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For: Ptitsyn OB. Protein folding and protein evolution: common folding nucleus in different subfamilies of c-type cytochromes? J Mol Biol 1998;278:655-66. [PMID: 9600846 DOI: 10.1006/jmbi.1997.1620] [Citation(s) in RCA: 103] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Number Cited by Other Article(s)
1
Bychkova VE, Dolgikh DA, Balobanov VA, Finkelstein AV. Formation of the Native Topology of a Protein is due to the "Conserved but Non-Functional" Residues: A Case of Apomyoglobin Folding. FRONT BIOSCI-LANDMRK 2024;29:379. [PMID: 39614442 DOI: 10.31083/j.fbl2911379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2024] [Revised: 09/09/2024] [Accepted: 09/12/2024] [Indexed: 12/01/2024]
2
Bychkova VE, Dolgikh DA, Balobanov VA. Function of the Conserved Non-Functional Residues in Apomyoglobin - to Determine and to Preserve Correct Topology of the Protein. BIOCHEMISTRY. BIOKHIMIIA 2023;88:1905-1909. [PMID: 38105207 DOI: 10.1134/s0006297923110184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Revised: 07/18/2023] [Accepted: 08/31/2023] [Indexed: 12/19/2023]
3
Margulies DH, Taylor DK, Jiang J, Boyd LF, Ahmad J, Mage MG, Natarajan K. Chaperones and Catalysts: How Antigen Presentation Pathways Cope With Biological Necessity. Front Immunol 2022;13:859782. [PMID: 35464465 PMCID: PMC9022212 DOI: 10.3389/fimmu.2022.859782] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Accepted: 03/11/2022] [Indexed: 11/13/2022]  Open
4
Extracting phylogenetic dimensions of coevolution reveals hidden functional signals. Sci Rep 2022;12:820. [PMID: 35039514 PMCID: PMC8764114 DOI: 10.1038/s41598-021-04260-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Accepted: 12/17/2021] [Indexed: 11/08/2022]  Open
5
Khan SH, Prakash A, Pandey P, Islam A, Hassan MI, Lynn AM, Ahmad F. Effects of natural mutations (L94I and L94V) on the stability and mechanism of folding of horse cytochrome c: A combined in vitro and molecular dynamics simulations approach. Int J Biol Macromol 2020;159:976-985. [PMID: 32439437 DOI: 10.1016/j.ijbiomac.2020.05.059] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2020] [Revised: 05/08/2020] [Accepted: 05/09/2020] [Indexed: 12/13/2022]
6
Rogers DM, Jasim SB, Dyer NT, Auvray F, Réfrégiers M, Hirst JD. Electronic Circular Dichroism Spectroscopy of Proteins. Chem 2019. [DOI: 10.1016/j.chempr.2019.07.008] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
7
Mizukami T, Xu M, Fazlieva R, Bychkova VE, Roder H. Complex Folding Landscape of Apomyoglobin at Acidic pH Revealed by Ultrafast Kinetic Analysis of Core Mutants. J Phys Chem B 2018;122:11228-11239. [PMID: 30133301 DOI: 10.1021/acs.jpcb.8b06895] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
8
Oxidative stress is tightly regulated by cytochrome c phosphorylation and respirasome factors in mitochondria. Proc Natl Acad Sci U S A 2018;115:7955-7960. [PMID: 30018060 PMCID: PMC6077723 DOI: 10.1073/pnas.1806833115] [Citation(s) in RCA: 71] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
9
Khan SH, Islam A, Hassan MI, Sharma S, Singh TP, Ahmad F. Effect of conservative mutations (L94V and L94I) on the structure and stability of horse cytochrome c. Arch Biochem Biophys 2017;633:40-49. [DOI: 10.1016/j.abb.2017.08.015] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2017] [Revised: 08/07/2017] [Accepted: 08/25/2017] [Indexed: 02/07/2023]
10
Refojo PN, Calisto F, Ribeiro MA, Teixeira M, Pereira MM. The monoheme cytochrome c subunit of Alternative Complex III is a direct electron donor to caa3 oxygen reductase in Rhodothermus marinus. Biol Chem 2017;398:1037-1044. [DOI: 10.1515/hsz-2016-0323] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2016] [Accepted: 01/23/2017] [Indexed: 11/15/2022]
11
Structural and thermodynamic characterisation of L94F mutant of horse cytochrome c. Int J Biol Macromol 2016;92:202-212. [DOI: 10.1016/j.ijbiomac.2016.06.096] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Revised: 06/24/2016] [Accepted: 06/30/2016] [Indexed: 12/11/2022]
12
Sacquin-Mora S. Fold and flexibility: what can proteins' mechanical properties tell us about their folding nucleus? J R Soc Interface 2016;12:rsif.2015.0876. [PMID: 26577596 DOI: 10.1098/rsif.2015.0876] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]  Open
13
Sacquin-Mora S. Bridging Enzymatic Structure Function via Mechanics: A Coarse-Grain Approach. Methods Enzymol 2016;578:227-48. [PMID: 27497169 DOI: 10.1016/bs.mie.2016.05.022] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
14
Echave J, Spielman SJ, Wilke CO. Causes of evolutionary rate variation among protein sites. Nat Rev Genet 2016;17:109-21. [PMID: 26781812 DOI: 10.1038/nrg.2015.18] [Citation(s) in RCA: 180] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
15
Sil P, Paul SS, Silvio ED, Travaglini-Allocatelli C, Chattopadhyay K. Studies of cytochrome c-551 unfolding using fluorescence correlation spectroscopy and other biophysical techniques. Phys Chem Chem Phys 2016;18:24537-48. [DOI: 10.1039/c6cp04819f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
16
Nagao S, Ueda M, Osuka H, Komori H, Kamikubo H, Kataoka M, Higuchi Y, Hirota S. Domain-swapped dimer of Pseudomonas aeruginosa cytochrome c551: structural insights into domain swapping of cytochrome c family proteins. PLoS One 2015;10:e0123653. [PMID: 25853415 PMCID: PMC4390240 DOI: 10.1371/journal.pone.0123653] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2015] [Accepted: 02/23/2015] [Indexed: 02/06/2023]  Open
17
Yamanaka M, Nagao S, Komori H, Higuchi Y, Hirota S. Change in structure and ligand binding properties of hyperstable cytochrome c555 from Aquifex aeolicus by domain swapping. Protein Sci 2015;24:366-75. [PMID: 25586341 DOI: 10.1002/pro.2627] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2014] [Revised: 12/16/2014] [Accepted: 12/18/2014] [Indexed: 01/20/2023]
18
Matsuoka M, Sugita M, Kikuchi T. Implication of the cause of differences in 3D structures of proteins with high sequence identity based on analyses of amino acid sequences and 3D structures. BMC Res Notes 2014;7:654. [PMID: 25231773 PMCID: PMC4180342 DOI: 10.1186/1756-0500-7-654] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2014] [Accepted: 09/05/2014] [Indexed: 11/10/2022]  Open
19
Zaidi S, Hassan MI, Islam A, Ahmad F. The role of key residues in structure, function, and stability of cytochrome-c. Cell Mol Life Sci 2014;71:229-55. [PMID: 23615770 PMCID: PMC11113841 DOI: 10.1007/s00018-013-1341-1] [Citation(s) in RCA: 108] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2013] [Revised: 04/05/2013] [Accepted: 04/08/2013] [Indexed: 02/06/2023]
20
Söderberg CAG, Rajan S, Shkumatov AV, Gakh O, Schaefer S, Ahlgren EC, Svergun DI, Isaya G, Al-Karadaghi S. The molecular basis of iron-induced oligomerization of frataxin and the role of the ferroxidation reaction in oligomerization. J Biol Chem 2013;288:8156-8167. [PMID: 23344952 PMCID: PMC3605634 DOI: 10.1074/jbc.m112.442285] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2012] [Revised: 01/22/2013] [Indexed: 11/06/2022]  Open
21
Udgaonkar JB. Polypeptide chain collapse and protein folding. Arch Biochem Biophys 2013;531:24-33. [DOI: 10.1016/j.abb.2012.10.003] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2012] [Revised: 10/01/2012] [Accepted: 10/08/2012] [Indexed: 12/11/2022]
22
Lin CY, Chen YC, Lo YS, Yang JM. Inferring homologous protein-protein interactions through pair position specific scoring matrix. BMC Bioinformatics 2013;14 Suppl 2:S11. [PMID: 23367879 PMCID: PMC3549806 DOI: 10.1186/1471-2105-14-s2-s11] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
23
Mason JM, Bendall DS, Howe CJ, Worrall JA. The role of a disulfide bridge in the stability and folding kinetics of Arabidopsis thaliana cytochrome c6A. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2012;1824:311-8. [DOI: 10.1016/j.bbapap.2011.10.015] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2011] [Revised: 10/11/2011] [Accepted: 10/26/2011] [Indexed: 10/15/2022]
24
Kanaujia SP, Jeyakanthan J, Shinkai A, Kuramitsu S, Yokoyama S, Sekar K. Crystal structures, dynamics and functional implications of molybdenum-cofactor biosynthesis protein MogA from two thermophilic organisms. Acta Crystallogr Sect F Struct Biol Cryst Commun 2011;67:2-16. [PMID: 21206014 PMCID: PMC3079962 DOI: 10.1107/s1744309110035037] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2010] [Accepted: 08/31/2010] [Indexed: 11/11/2022]
25
Lavelle DT, Pearson WR. Globally, unrelated protein sequences appear random. ACTA ACUST UNITED AC 2009;26:310-8. [PMID: 19948773 DOI: 10.1093/bioinformatics/btp660] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
26
Narang P, Bhushan K, Bose S, Jayaram B. A computational pathway for bracketing native-like structures fo small alpha helical globular proteins. Phys Chem Chem Phys 2009;7:2364-75. [PMID: 19785123 DOI: 10.1039/b502226f] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
27
Huggins W, Ghosh SK, Wollenzien P. Hydrogen bonding and packing density are factors most strongly connected to limiting sites of high flexibility in the 16S rRNA in the 30S ribosome. BMC STRUCTURAL BIOLOGY 2009;9:49. [PMID: 19643000 PMCID: PMC2731775 DOI: 10.1186/1472-6807-9-49] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/03/2009] [Accepted: 07/30/2009] [Indexed: 11/10/2022]
28
Aubin-Tam ME, Hwang W, Hamad-Schifferli K. Site-directed nanoparticle labeling of cytochrome c. Proc Natl Acad Sci U S A 2009;106:4095-100. [PMID: 19251670 PMCID: PMC2657428 DOI: 10.1073/pnas.0807299106] [Citation(s) in RCA: 77] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2008] [Indexed: 11/18/2022]  Open
29
A single mutation induces molten globule formation and a drastic destabilization of wild-type cytochrome c at pH 6.0. J Biol Inorg Chem 2009;14:751-60. [DOI: 10.1007/s00775-009-0488-6] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2008] [Accepted: 02/20/2009] [Indexed: 10/21/2022]
30
A new computational model to study mass inhomogeneity and hydrophobicity inhomogeneity in proteins. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2009;38:577-87. [DOI: 10.1007/s00249-009-0409-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2008] [Revised: 01/05/2009] [Accepted: 01/14/2009] [Indexed: 10/20/2022]
31
Dyuysekina AE, Dolgikh DA, Samatova Baryshnikova EN, Tiktopulo EI, Balobanov VA, Bychkova VE. pH-induced equilibrium unfolding of apomyoglobin: substitutions at conserved Trp14 and Met131 and non-conserved Val17 positions. BIOCHEMISTRY (MOSCOW) 2008;73:693-701. [PMID: 18620536 DOI: 10.1134/s0006297908060102] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
32
Kim S, Chung JK, Kwak K, Bowman SEJ, Bren KL, Bagchi B, Fayer MD. Native and unfolded cytochrome c--comparison of dynamics using 2D-IR vibrational echo spectroscopy. J Phys Chem B 2008;112:10054-63. [PMID: 18646797 PMCID: PMC2671645 DOI: 10.1021/jp802246h] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
33
Michel LV, Bren KL. Submolecular unfolding units of Pseudomonas aeruginosa cytochrome c-551. J Biol Inorg Chem 2008;13:837-45. [PMID: 18392863 DOI: 10.1007/s00775-008-0370-y] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2007] [Accepted: 03/20/2008] [Indexed: 11/26/2022]
34
Adam B, Charloteaux B, Beaufays J, Vanhamme L, Godfroid E, Brasseur R, Lins L. Distantly related lipocalins share two conserved clusters of hydrophobic residues: use in homology modeling. BMC STRUCTURAL BIOLOGY 2008;8:1. [PMID: 18190694 PMCID: PMC2254393 DOI: 10.1186/1472-6807-8-1] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2007] [Accepted: 01/11/2008] [Indexed: 11/23/2022]
35
Lavery R, Sacquin-Mora S. Protein mechanics: a route from structure to function. J Biosci 2007;32:891-8. [PMID: 17914231 DOI: 10.1007/s12038-007-0089-x] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
36
Sacquin-Mora S, Laforet E, Lavery R. Locating the active sites of enzymes using mechanical properties. Proteins 2007;67:350-9. [PMID: 17311346 DOI: 10.1002/prot.21353] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
37
Jernigan RL, Kloczkowski A. Packing regularities in biological structures relate to their dynamics. METHODS IN MOLECULAR BIOLOGY (CLIFTON, N.J.) 2006;350:251-76. [PMID: 16957327 PMCID: PMC2039702 DOI: 10.1385/1-59745-189-4:251] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/28/2023]
38
Liu X, Li J, Guo W, Wang W. A new method for quantifying residue conservation and its applications to the protein folding nucleus. Biochem Biophys Res Commun 2006;351:1031-6. [PMID: 17097065 DOI: 10.1016/j.bbrc.2006.10.157] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2006] [Accepted: 10/27/2006] [Indexed: 11/23/2022]
39
Chen M, Wilson CJ, Wu Y, Wittung-Stafshede P, Ma J. Correlation between Protein Stability Cores and Protein Folding Kinetics: A Case Study on Pseudomonas aeruginosa Apo-Azurin. Structure 2006;14:1401-10. [PMID: 16962971 DOI: 10.1016/j.str.2006.07.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2006] [Revised: 06/30/2006] [Accepted: 07/13/2006] [Indexed: 10/24/2022]
40
Williams P, Coates L, Mohammed F, Gill R, Erskine P, Bourgeois D, Wood SP, Anthony C, Cooper JB. The 1.6Å X-ray Structure of the Unusual c-type Cytochrome, Cytochrome cL, from the Methylotrophic Bacterium Methylobacterium extorquens. J Mol Biol 2006;357:151-62. [PMID: 16414073 DOI: 10.1016/j.jmb.2005.12.055] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2005] [Revised: 12/12/2005] [Accepted: 12/14/2005] [Indexed: 10/25/2022]
41
Sacquin-Mora S, Lavery R. Investigating the local flexibility of functional residues in hemoproteins. Biophys J 2006;90:2706-17. [PMID: 16428284 PMCID: PMC1414562 DOI: 10.1529/biophysj.105.074997] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
42
Roy S, Singha S, Bhattacharya J, Ghoshmoulick R, Dasgupta AK. A size dependent folding contour for cytochrome C. Biophys Chem 2005;119:14-22. [PMID: 16183192 DOI: 10.1016/j.bpc.2005.08.009] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2005] [Revised: 08/20/2005] [Accepted: 08/22/2005] [Indexed: 11/18/2022]
43
Andrews D, Mattatall NR, Arnold D, Hill BC. Expression, purification, and characterization of the CuA–cytochrome c domain from subunit II of the Bacillus subtilis cytochrome caa3 complex in Escherichia coli. Protein Expr Purif 2005;42:227-35. [PMID: 15907384 DOI: 10.1016/j.pep.2004.11.009] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2004] [Revised: 11/12/2004] [Accepted: 11/13/2004] [Indexed: 11/25/2022]
44
Gallo M, Paludi D, Cicero DO, Chiovitti K, Millo E, Salis A, Damonte G, Corsaro A, Thellung S, Schettini G, Melino S, Florio T, Paci M, Aceto A. Identification of a conserved N-capping box important for the structural autonomy of the prion alpha 3-helix: the disease associated D202N mutation destabilizes the helical conformation. Int J Immunopathol Pharmacol 2005;18:95-112. [PMID: 15698515 DOI: 10.1177/039463200501800111] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]  Open
45
Travaglini-Allocatelli C, Gianni S, Dubey VK, Borgia A, Di Matteo A, Bonivento D, Cutruzzolà F, Bren KL, Brunori M. An obligatory intermediate in the folding pathway of cytochrome c552 from Hydrogenobacter thermophilus. J Biol Chem 2005;280:25729-34. [PMID: 15883159 DOI: 10.1074/jbc.m502628200] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
46
Vendruscolo M, Dobson CM. A glimpse at the organization of the protein universe. Proc Natl Acad Sci U S A 2005;102:5641-2. [PMID: 15827120 PMCID: PMC556289 DOI: 10.1073/pnas.0500274102] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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Liao H, Yeh W, Chiang D, Jernigan R, Lustig B. Protein sequence entropy is closely related to packing density and hydrophobicity. Protein Eng Des Sel 2005;18:59-64. [PMID: 15788422 PMCID: PMC2553042 DOI: 10.1093/protein/gzi009] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]  Open
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Porto M, Roman HE, Vendruscolo M, Bastolla U. Prediction of site-specific amino acid distributions and limits of divergent evolutionary changes in protein sequences. Mol Biol Evol 2004;22:630-8. [PMID: 15537801 DOI: 10.1093/molbev/msi048] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
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Paiardini A, Bossa F, Pascarella S. Evolutionarily conserved regions and hydrophobic contacts at the superfamily level: The case of the fold-type I, pyridoxal-5'-phosphate-dependent enzymes. Protein Sci 2004;13:2992-3005. [PMID: 15498941 PMCID: PMC2286575 DOI: 10.1110/ps.04938104] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2004] [Revised: 07/30/2004] [Accepted: 08/02/2004] [Indexed: 10/26/2022]
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Braun M, Thöny-Meyer L. Biosynthesis of artificial microperoxidases by exploiting the secretion and cytochrome c maturation apparatuses of Escherichia coli. Proc Natl Acad Sci U S A 2004;101:12830-5. [PMID: 15328415 PMCID: PMC516481 DOI: 10.1073/pnas.0402435101] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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