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Kampowski T, Schuler B, Speck T, Poppinga S. The effects of substrate porosity, mechanical substrate properties and loading conditions on the attachment performance of the Mediterranean medicinal leech ( Hirudo verbana). J R Soc Interface 2022; 19:20220068. [PMID: 35317649 PMCID: PMC8941423 DOI: 10.1098/rsif.2022.0068] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The ectoparasitic lifestyle of the Mediterranean medicinal leech (Hirudo verbana) requires reliable functioning of its attachment organs (i.e. anterior and posterior suction discs) on multiple habitat- and host-specific surfaces under both normal and shear stresses. In addition to some intrinsic properties of the attachment devices, however, only a few extrinsic factors (e.g. substrate roughness and porosity) have been considered in previous studies on leech suckers. Using centrifugal force experiments, we analysed the attachment performance of H. verbana under different types of loading on artificial substrates differing in porosity and their mechanical properties. Whereas the substrate porosity significantly influenced leech attachment under normal and shear loading, the different mechanical properties did not noticeably affect attachment within the considered parameter limits. Furthermore, suction was confirmed to be the primary attachment mechanism independent of the prevailing loading condition. The question of whether the suction cups of H. verbana are adapted to a specific loading condition could not be answered. In any case, our results again highlight the high functional resilience of leech suckers guaranteeing a successful ectoparasitic lifestyle.
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Affiliation(s)
- Tim Kampowski
- Plant Biomechanics Group (PBG), Botanic Garden, University of Freiburg, Schänzlestr. 1, 79104 Freiburg im Breisgau, Germany
- Freiburg Materials Research Center (FMF), University of Freiburg, Stefan-Meier-Str. 21, 79104 Freiburg im Breisgau, Germany
| | - Benedikt Schuler
- Plant Biomechanics Group (PBG), Botanic Garden, University of Freiburg, Schänzlestr. 1, 79104 Freiburg im Breisgau, Germany
| | - Thomas Speck
- Plant Biomechanics Group (PBG), Botanic Garden, University of Freiburg, Schänzlestr. 1, 79104 Freiburg im Breisgau, Germany
- Freiburg Materials Research Center (FMF), University of Freiburg, Stefan-Meier-Str. 21, 79104 Freiburg im Breisgau, Germany
- Cluster of Excellence livMatS@ FIT – Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110 Freiburg im Breisgau, Germany
| | - Simon Poppinga
- Plant Biomechanics Group (PBG), Botanic Garden, University of Freiburg, Schänzlestr. 1, 79104 Freiburg im Breisgau, Germany
- Freiburg Materials Research Center (FMF), University of Freiburg, Stefan-Meier-Str. 21, 79104 Freiburg im Breisgau, Germany
- Cluster of Excellence livMatS@ FIT – Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110 Freiburg im Breisgau, Germany
- Current address: Botanical Garden, Technical University of Darmstadt, Department of Biology, Schnittspahnstr. 2, 64287 Darmstadt, Germany
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Mukherjee R, Caron DP, Edson T, Trimmer BA. The control of nocifensive movements in the caterpillar Manduca sexta. J Exp Biol 2020; 223:jeb221010. [PMID: 32647020 DOI: 10.1242/jeb.221010] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2019] [Accepted: 07/01/2020] [Indexed: 11/20/2022]
Abstract
In response to a noxious stimulus on the abdomen, caterpillars lunge their head towards the site of stimulation. This nocifensive 'strike' behavior is fast (∼0.5 s duration), targeted and usually unilateral. It is not clear how the fast strike movement is generated and controlled, because caterpillar muscle develops peak force relatively slowly (∼1 s) and the baseline hemolymph pressure is low (<2 kPa). Here, we show that strike movements are largely driven by ipsilateral muscle activation that propagates from anterior to posterior segments. There is no sustained pre-strike muscle activation that would be expected for movements powered by the rapid release of stored elastic energy. Although muscle activation on the ipsilateral side is correlated with segment shortening, activity on the contralateral side consists of two phases of muscle stimulation and a marked decline between them. This decrease in motor activity precedes rapid expansion of the segment on the contralateral side, presumably allowing the body wall to stretch more easily. The subsequent increase in contralateral motor activation may slow or stabilize movements as the head reaches its target. Strike behavior is therefore a controlled fast movement involving the coordination of muscle activity on each side and along the length of the body.
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Affiliation(s)
- Ritwika Mukherjee
- Tufts University, Department of Biology, 200 Boston Avenue, Suite 2600, MA 02155, USA
| | - Daniel P Caron
- Tufts University, Department of Biology, 200 Boston Avenue, Suite 2600, MA 02155, USA
| | - Timothy Edson
- Department of Chemistry and Biochemistry, Bates College, 2 Andrews Road, Lewiston, ME 04240, USA
| | - Barry A Trimmer
- Tufts University, Department of Biology, 200 Boston Avenue, Suite 2600, MA 02155, USA
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Umedachi T, Vikas V, Trimmer BA. Softworms: the design and control of non-pneumatic, 3D-printed, deformable robots. BIOINSPIRATION & BIOMIMETICS 2016; 11:025001. [PMID: 26963596 DOI: 10.1088/1748-3190/11/2/025001] [Citation(s) in RCA: 88] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Robots that can easily interact with humans and move through natural environments are becoming increasingly essential as assistive devices in the home, office and hospital. These machines need to be safe, effective, and easy to control. One strategy towards accomplishing these goals is to build the robots using soft and flexible materials to make them much more approachable and less likely to damage their environment. A major challenge is that comparatively little is known about how best to design, fabricate and control deformable machines. Here we describe the design, fabrication and control of a novel soft robotic platform (Softworms) as a modular device for research, education and public outreach. These robots are inspired by recent neuromechanical studies of crawling and climbing by larval moths and butterflies (Lepidoptera, caterpillars). Unlike most soft robots currently under development, the Softworms do not rely on pneumatic or fluidic actuators but are electrically powered and actuated using either shape-memory alloy microcoils or motor tendons, and they can be modified to accept other muscle-like actuators such as electroactive polymers. The technology is extremely versatile, and different designs can be quickly and cheaply fabricated by casting elastomeric polymers or by direct 3D printing. Softworms can crawl, inch or roll, and they are steerable and even climb steep inclines. Softworms can be made in any shape but here we describe modular and monolithic designs requiring little assembly. These modules can be combined to make multi-limbed devices. We also describe two approaches for controlling such highly deformable structures using either model-free state transition-reward matrices or distributed, mechanically coupled oscillators. In addition to their value as a research platform, these robots can be developed for use in environmental, medical and space applications where cheap, lightweight and shape-changing deformable robots will provide new performance capabilities.
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Shumway KR, Porfirio DJ, Bailey EF. Phonation-related rate coding and recruitment in the genioglossus muscle. Exp Brain Res 2015; 233:2133-40. [PMID: 25899868 DOI: 10.1007/s00221-015-4284-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2014] [Accepted: 04/10/2015] [Indexed: 11/26/2022]
Abstract
Motor unit recruitment was assessed in two muscles with similar muscle fiber-type compositions and that participate in skilled movements: the tongue muscle, genioglossus (GG), and the hand muscle, first dorsal interosseous (FDI). Our primary objectives were to determine in the framework of a voluntary movement whether muscle force is regulated in tongue as it is in limb, i.e., via processes of rate coding and recruitment. Recruitment in the two muscles was assessed within each subject in the context of ramp force (FDI) and in the tongue (GG) during vowel production and specifically, in the context of ramp increases in loudness, and subsequently expressed relative to the maximal. The principle findings of the study are that the general rules of recruitment and rate coding hold true for both GG and FDI, and second, that average firing rates, firing rates at recruitment and peak firing rates in GG are significantly higher than for FDI (P < 0.001) despite tasks performed across comparable force ranges (~2-40 % of max). The higher firing rates observed in the tongue within the context of phonation may be a function of that muscle's dual role as (prime) mover and hydrostatic support element.
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Affiliation(s)
- K R Shumway
- Department of Physiology, College of Medicine, The University of Arizona, Tucson, AZ, 85721-0093, USA
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5
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Abstract
Muscular hydrostats (such as mollusks), and fluid-filled animals (such as annelids), can exploit their constant-volume tissues to transfer forces and displacements in predictable ways, much as articulated animals use hinges and levers. Although larval insects contain pressurized fluids, they also have internal air tubes that are compressible and, as a result, they have more uncontrolled degrees of freedom. Therefore, the mechanisms by which larval insects control their movements are expected to reveal useful strategies for designing soft biomimetic robots. Using caterpillars as a tractable model system, it is now possible to identify the biomechanical and neural strategies for controlling movements in such highly deformable animals. For example, the tobacco hornworm, Manduca sexta, can stiffen its body by increasing muscular tension (and therefore body pressure) but the internal cavity (hemocoel) is not iso-barometric, nor is pressure used to directly control the movements of its limbs. Instead, fluid and tissues flow within the hemocoel and the body is soft and flexible to conform to the substrate. Even the gut contributes to the biomechanics of locomotion; it is decoupled from the movements of the body wall and slides forward within the body cavity at the start of each step. During crawling the body is kept in tension for part of the stride and compressive forces are exerted on the substrate along the axis of the caterpillar, thereby using the environment as a skeleton. The timing of muscular activity suggests that crawling is coordinated by proleg-retractor motoneurons and that the large segmental muscles produce anterograde waves of lifting that do not require precise timing. This strategy produces a robust form of locomotion in which the kinematics changes little with orientation. In different species of caterpillar, the presence of prolegs on particular body segments is related to alternative kinematics such as "inching." This suggests a mechanism for the evolution of different gaits through changes in the usage of prolegs, rather than, through extensive alterations in the motor program controlling the body wall. Some of these findings are being used to design and test novel control-strategies for highly deformable robots. These "softworm" devices are providing new insights into the challenges faced by any soft animal navigating in a terrestrial environment.
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Affiliation(s)
- B A Trimmer
- *Department of Biology, School of Arts and Sciences, Tufts University, 200 Boston Avenue, Suite 2600, Medford, MA 02155, USA; Howard Hughes Medical Institute, Janelia Farm, Ashburn, VA, USA
| | - Huai-ti Lin
- *Department of Biology, School of Arts and Sciences, Tufts University, 200 Boston Avenue, Suite 2600, Medford, MA 02155, USA; Howard Hughes Medical Institute, Janelia Farm, Ashburn, VA, USA
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Abstract
Owing to the complexity of neuronal circuits, precise mathematical descriptions of brain functions remain an elusive ambition. A more modest focus of many neuroscientists, central pattern generators, are more tractable neuronal circuits specialized to generate rhythmic movements, including locomotion. The relative simplicity and well-defined motor functions of these circuits provide an opportunity for uncovering fundamental principles of neuronal information processing. Here we present the culmination of mathematical analysis that captures the adaptive behaviors emerging from interactions between a central pattern generator, the body, and the physical environment during locomotion. The biologically realistic model describes the undulatory motions of swimming leeches with quantitative accuracy and, without further parameter tuning, predicts the sweeping changes in oscillation patterns of leeches undulating in air or swimming in high-viscosity fluid. The study demonstrates that central pattern generators are capable of adapting oscillations to the environment through sensory feedback, but without guidance from the brain.
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Helm C, Weigert A, Mayer G, Bleidorn C. Myoanatomy ofMyzostoma cirriferum(Annelida, Myzostomida): Implications for the evolution of the myzostomid body plan. J Morphol 2012; 274:456-66. [DOI: 10.1002/jmor.20107] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2012] [Revised: 10/09/2012] [Accepted: 10/10/2012] [Indexed: 11/12/2022]
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Abstract
We have developed several innovative designs for a new kind of robot that uses a continuous wave of peristalsis for locomotion, the same method that earthworms use, and report on the first completed prototypes. This form of locomotion is particularly effective in constrained spaces, and although the motion has been understood for some time, it has rarely been effectively or accurately implemented in a robotic platform. As an alternative to robots with long segments, we present a technique using a braided mesh exterior to produce smooth waves of motion along the body of a worm-like robot. We also present a new analytical model of this motion and compare predicted robot velocity to a 2D simulation and a working prototype. Because constant-velocity peristaltic waves form due to accelerating and decelerating segments, it has been often assumed that this motion requires strong anisotropic ground friction. However, our analysis shows that with smooth, constant velocity waves, the forces that cause accelerations within the body sum to zero. Instead, transition timing between aerial and ground phases plays a critical role in the amount of slippage, and the final robot speed. The concept is highly scalable, and we present methods of construction at two different scales.
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Affiliation(s)
- Alexander S Boxerbaum
- Department of Mechanical and Aerospace Engineering, Case Western Reserve University, Cleveland, Ohio, USA
| | - Kendrick M Shaw
- Department of Biology, Case Western Reserve University, Cleveland, Ohio, USA
| | - Hillel J Chiel
- Departments of Biology, Neurosciences, and Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio, USA
| | - Roger D Quinn
- Department of Mechanical and Aerospace Engineering, Case Western Reserve University, Cleveland, Ohio, USA
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9
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Mechanical Description of a Hyper-Redundant Robot Joint Mechanism Used for a Design of a Biomimetic Robotic Fish. JOURNAL OF ROBOTICS 2012. [DOI: 10.1155/2012/826364] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
A biologically inspired robot in the form of fish (mackerel) model using rubber (as the biomimetic material) for its hyper-redundant joint is presented in this paper. Computerized simulation of the most critical part of the model (the peduncle) shows that the rubber joints will be able to take up the stress that will be created. Furthermore, the frequency-induced softening of the rubber used was found to be critical if the joints are going to oscillate at frequency above 25 Hz. The robotic fish was able to attain a speed of 0.985 m/s while the tail beats at a maximum of 1.7 Hz when tested inside water. Furthermore, a minimum turning radius of 0.8 m (approximately 2 times the fish body length) was achieved.
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Lin HT, Slate DJ, Paetsch CR, Dorfmann AL, Trimmer BA. Scaling of caterpillar body properties and its biomechanical implications for the use of a hydrostatic skeleton. J Exp Biol 2011; 214:1194-204. [DOI: 10.1242/jeb.051029] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
SUMMARY
Caterpillars can increase their body mass 10,000-fold in 2 weeks. It is therefore remarkable that most caterpillars appear to maintain the same locomotion kinematics throughout their entire larval stage. This study examined how the body properties of a caterpillar might change to accommodate such dramatic changes in body load. Using Manduca sexta as a model system, we measured changes in body volume, tissue density and baseline body pressure, and the dimensions of load-bearing tissues (the cuticle and muscles) over a body mass range from milligrams to several grams. All Manduca biometrics relevant to the hydrostatic skeleton scaled allometrically but close to the isometric predictions. Body density and pressure were almost constant. We next investigated the effects of scaling on the bending stiffness of the caterpillar hydrostatic skeleton. The anisotropic non-linear mechanical response of Manduca muscles and soft cuticle has previously been quantified and modeled with constitutive equations. Using biometric data and these material laws, we constructed finite element models to simulate a hydrostatic skeleton under different conditions. The results show that increasing the internal pressure leads to a non-linear increase in bending stiffness. Increasing the body size results in a decrease in the normalized bending stiffness. Muscle activation can double this stiffness in the physiological pressure range, but thickening the cuticle or increasing the muscle area reduces the structural stiffness. These non-linear effects may dictate the effectiveness of a hydrostatic skeleton at different sizes. Given the shared anatomy and size variation in Lepidoptera larvae, these mechanical scaling constraints may implicate the diverse locomotion strategies in different species.
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Affiliation(s)
- Huai-Ti Lin
- Department of Biology, Tufts University, 165 Packard Avenue, Dana Lab, Medford, MA 02155, USA
| | - Daniel J. Slate
- Department of Biology, Tufts University, 165 Packard Avenue, Dana Lab, Medford, MA 02155, USA
| | - Christopher R. Paetsch
- Department of Civil & Environmental Engineering, Tufts University, 200 College Avenue, Anderson Hall, Medford, MA 02155, USA
| | - A. Luis Dorfmann
- Department of Civil & Environmental Engineering, Tufts University, 200 College Avenue, Anderson Hall, Medford, MA 02155, USA
| | - Barry A. Trimmer
- Department of Biology, Tufts University, 165 Packard Avenue, Dana Lab, Medford, MA 02155, USA
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11
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Bruand J, Sistla S, Mériaux C, Dorrestein PC, Gaasterland T, Ghassemian M, Wisztorski M, Fournier I, Salzet M, Macagno E, Bafna V. Automated querying and identification of novel peptides using MALDI mass spectrometric imaging. J Proteome Res 2011; 10:1915-28. [PMID: 21332220 DOI: 10.1021/pr101159e] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
MSI is a molecular imaging technique that allows for the generation of topographic 2D maps for various endogenous and some exogenous molecules without prior specification of the molecule. In this paper, we start with the premise that a region of interest (ROI) is given to us based on preselected morphological criteria. Given an ROI, we develop a pipeline, first to determine mass values with distinct expression signatures, localized to the ROI, and second to identify the peptides corresponding to these mass values. To identify spatially differentiated masses, we implement a statistic that allows us to estimate, for each spectral peak, the probability that it is over- or under-expressed within the ROI versus outside. To identify peptides corresponding to these masses, we apply LC-MS/MS to fragment endogenous (nonprotease digested) peptides. A novel pipeline based on constructing sequence tags de novo from both original and decharged spectra and a subsequent database search is used to identify peptides. As the MSI signal and the identified peptide are only related by a single mass value, we isolate the corresponding transcript and perform a second validation via in situ hybridization of the transcript. We tested our approach, MSI-Query, on a number of ROIs in the medicinal leech, Hirudo medicinalis, including the central nervous system (CNS). The Hirudo CNS is capable of regenerating itself after injury, thus forming an important model system for neuropeptide identification. The pipeline helps identify a number of novel peptides. Specifically, we identify a gene that we name HmIF4, which is a member of the intermediate filament family involved in neural development and a second novel, uncharacterized peptide. A third peptide, derived from the histone H2B, is also identified, in agreement with the previously suggested role of histone H2B in axon targeting.
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Affiliation(s)
- Jocelyne Bruand
- University of California, San Diego, La Jolla, California 92093, United States
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Mijailovich SM, Stojanovic B, Kojic M, Liang A, Wedeen VJ, Gilbert RJ. Derivation of a finite-element model of lingual deformation during swallowing from the mechanics of mesoscale myofiber tracts obtained by MRI. J Appl Physiol (1985) 2010; 109:1500-14. [PMID: 20689096 PMCID: PMC2980378 DOI: 10.1152/japplphysiol.00493.2010] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2010] [Accepted: 07/30/2010] [Indexed: 11/22/2022] Open
Abstract
To demonstrate the relationship between lingual myoarchitecture and mechanics during swallowing, we performed a finite-element (FE) simulation of lingual deformation employing mesh aligned with the vector coordinates of myofiber tracts obtained by diffusion tensor imaging with tractography in humans. Material properties of individual elements were depicted in terms of Hill's three-component phenomenological model, assuming that the FE mesh was composed of anisotropic muscle and isotropic connective tissue. Moreover, the mechanical model accounted for elastic constraints by passive and active elements from the superior and inferior directions and the effect of out-of-plane muscles and connective tissue. Passive bolus effects were negligible. Myofiber tract activation was simulated over 500 ms in 1-ms steps following lingual tip association with the hard palate and incorporated specifically the accommodative and propulsive phases of the swallow. Examining the displacement field, active and passive muscle stress, elemental stretch, and strain rate relative to changes of global shape, we demonstrate that lingual reconfiguration during these swallow phases is characterized by (in sequence) the following: 1) lingual tip elevation and shortening in the anterior-posterior direction; 2) inferior displacement related to hyoglossus contraction at its inferior-most position; and 3) dominant clockwise rotation related to regional contraction of the genioglossus and contraction of the hyoglossus following anterior displacement. These simulations demonstrate that lingual deformation during the indicated phases of swallowing requires temporally patterned activation of intrinsic and extrinsic muscles and delineate a method to ascertain the mechanics of normal and pathological swallowing.
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Affiliation(s)
- Srboljub M Mijailovich
- Molecular and Integrative Physiological Sciences, Department of Environmental Health, Harvard School of Public Health, Boston, MA 02115, USA.
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Lin HT, Trimmer BA. The substrate as a skeleton: ground reaction forces from a soft-bodied legged animal. J Exp Biol 2010; 213:1133-42. [DOI: 10.1242/jeb.037796] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
SUMMARY
The measurement of forces generated during locomotion is essential for the development of accurate mechanical models of animal movements. However, animals that lack a stiff skeleton tend to dissipate locomotor forces in large tissue deformation and most have complex or poorly defined substrate contacts. Under these conditions, measuring propulsive and supportive forces is very difficult. One group that is an exception to this problem is lepidopteran larvae which, despite lacking a rigid skeleton, have well-developed limbs (the prolegs) that can be used for climbing in complex branched structures and on a variety of surfaces. Caterpillars therefore are excellent for examining the relationship between soft body deformation and substrate reaction forces during locomotion. In this study, we devised a method to measure the ground reaction forces (GRFs) at multiple contact points during crawling by the tobacco hornworm (Manduca sexta). Most abdominal prolegs bear similar body weight during their stance phase. Interestingly, forward reaction forces did not come from pushing off the substrate. Instead, most positive reaction forces came from anterior abdominal prolegs loaded in tension while posterior legs produced drag in most instances. The counteracting GRFs effectively stretch the animal axially during the second stage of a crawl cycle. These findings help in understanding how a terrestrial soft-bodied animal can interact with its substrate to control deformation without hydraulic actuation. The results also provide insights into the behavioral and mechanistic constraints leading to the evolution of diverse proleg arrangements in different species of caterpillar.
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Affiliation(s)
- Huai Ti Lin
- Tufts University, 165 Packard Avenue, Medford, MA, USA
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Cofer D, Cymbalyuk G, Reid J, Zhu Y, Heitler WJ, Edwards DH. AnimatLab: a 3D graphics environment for neuromechanical simulations. J Neurosci Methods 2010; 187:280-8. [PMID: 20074588 DOI: 10.1016/j.jneumeth.2010.01.005] [Citation(s) in RCA: 69] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2009] [Revised: 01/04/2010] [Accepted: 01/05/2010] [Indexed: 11/29/2022]
Abstract
The nervous systems of animals evolved to exert dynamic control of behavior in response to the needs of the animal and changing signals from the environment. To understand the mechanisms of dynamic control requires a means of predicting how individual neural and body elements will interact to produce the performance of the entire system. AnimatLab is a software tool that provides an approach to this problem through computer simulation. AnimatLab enables a computational model of an animal's body to be constructed from simple building blocks, situated in a virtual 3D world subject to the laws of physics, and controlled by the activity of a multicellular, multicompartment neural circuit. Sensor receptors on the body surface and inside the body respond to external and internal signals and then excite central neurons, while motor neurons activate Hill muscle models that span the joints and generate movement. AnimatLab provides a common neuromechanical simulation environment in which to construct and test models of any skeletal animal, vertebrate or invertebrate. The use of AnimatLab is demonstrated in a neuromechanical simulation of human arm flexion and the myotactic and contact-withdrawal reflexes.
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Affiliation(s)
- David Cofer
- Department of Biology, Georgia State University, Atlanta, GA 30303, USA
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15
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Ellerby DJ. The physiology and mechanics of undulatory swimming: a student laboratory exercise using medicinal leeches. ADVANCES IN PHYSIOLOGY EDUCATION 2009; 33:213-220. [PMID: 19745048 DOI: 10.1152/advan.00033.2009] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
The medicinal leech is a useful animal model for investigating undulatory swimming in the classroom. Unlike many swimming organisms, its swimming performance can be quantified without specialized equipment. A large blood meal alters swimming behavior in a way that can be used to generate a discussion of the hydrodynamics of swimming, muscle mechanics, hydrostatic skeletons, and the physiological features that allow leeches to deal with the volume increase and osmotic load imposed by the meal. Analyses can be carried out at a range of levels tailored to suit a particular class.
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Affiliation(s)
- David J Ellerby
- Department of Biological Sciences, Wellesley College, Wellesley, Massachusetts 02482, USA.
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16
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Claflin SB, Pien CL, Rangel EN, Utz KE, Walther HV, Wright AN, Ellerby DJ. Effects of feeding on medicinal leech swimming performance. J Zool (1987) 2009. [DOI: 10.1111/j.1469-7998.2008.00534.x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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17
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Trimmer BA. New challenges in biorobotics: Incorporating soft tissue into control systems. Appl Bionics Biomech 2008. [DOI: 10.1080/11762320802617255] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022] Open
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Trivedi D, Rahn CD, Kier WM, Walker ID. Soft robotics: Biological inspiration, state of the art, and future research. Appl Bionics Biomech 2008. [DOI: 10.1080/11762320802557865] [Citation(s) in RCA: 133] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022] Open
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Pittman LJ, Bailey EF. Genioglossus and intrinsic electromyographic activities in impeded and unimpeded protrusion tasks. J Neurophysiol 2008; 101:276-82. [PMID: 18987117 DOI: 10.1152/jn.91065.2008] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Eight muscles invest the human tongue: four extrinsic muscles have external origins and insert into the tongue body and four intrinsic muscles originate and terminate within the tongue. Previously, we noted minimal activation of the genioglossus tongue muscle during impeded protrusion tasks (i.e., having subjects push the tongue against a force transducer), suggesting that other muscles play a role in the production of tongue force. Accordingly, we sought to characterize genioglossus tongue muscle activities during impeded and unimpeded protrusion tasks (i.e., having subjects slowly and smoothly move the tongue out of their mouth). Electromyographic (EMG) and single motor-unit potentials of the extrinsic genioglossus muscle were recorded with tungsten microelectrodes and EMG activities of intrinsic tongue muscles were recorded with hook-wire electrodes inserted into the anterior tongue body. Tongue position was detected by an isotonic transducer coupled to the tongue tip. Protrusive force was detected by a force transducer attached to a rigid bar. Genioglossus and intrinsic tongue muscles were simultaneously active in both impeded and unimpeded protrusion tasks. Genioglossus whole muscle EMG and single motor-unit activities changed faithfully as a function of tongue position, with increased discharge associated with protrusion and decreased discharge associated with retraction back to the rest position. In contrast, during the impeded protrusion task drive the genioglossus muscle remained constant as protrusion force increased. Conversely, intrinsic tongue muscle activities appropriately followed changes in both tongue position and force. Importantly, we observed significantly higher levels of intrinsic muscle activity in the impeded protrusion task. These observations suggest that protrusion of the human tongue requires activation of the genioglossus and intrinsic protrudor muscles, with the former more important for establishing anterior-posterior tongue location and the latter playing a greater role in the generation of protrusive force. A biomechanical model of these actions is provided and discussed.
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Affiliation(s)
- Lora J Pittman
- Department of Physiology, College of Medicine, The University of Arizona, Tucson, AZ 85721-0093, USA
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20
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Lin HT, Dorfmann AL, Trimmer BA. Soft-cuticle biomechanics: a constitutive model of anisotropy for caterpillar integument. J Theor Biol 2008; 256:447-57. [PMID: 19014955 DOI: 10.1016/j.jtbi.2008.10.018] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2008] [Revised: 10/05/2008] [Accepted: 10/09/2008] [Indexed: 11/29/2022]
Abstract
The mechanical properties of soft tissues are important for the control of motion in many invertebrates. Pressurized cylindrical animals such as worms have circumferential reinforcement of the body wall; however, no experimental characterization of comparable anisotropy has been reported for climbing larvae such as caterpillars. Using uniaxial, real-time fluorescence extensometry on millimeter scale cuticle specimens we have quantified differences in the mechanical properties of cuticle to circumferentially and longitudinally applied forces. Based on these results and the composite matrix-fiber structure of cuticle, a pseudo-elastic transversely isotropic constitutive material model was constructed with circumferential reinforcement realized as a Horgan-Saccomandi strain energy function. This model was then used numerically to describe the anisotropic material properties of Manduca cuticle. The constitutive material model will be used in a detailed finite-element analysis to improve our understanding of the mechanics of caterpillar crawling.
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Affiliation(s)
- Huai-Ti Lin
- Department of Biology, Tufts University, Medford, MA 02155, USA.
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21
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Gilbert RJ, Napadow VJ, Gaige TA, Wedeen VJ. Anatomical basis of lingual hydrostatic deformation. J Exp Biol 2007; 210:4069-82. [PMID: 18025008 DOI: 10.1242/jeb.007096] [Citation(s) in RCA: 80] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
SUMMARYThe mammalian tongue is believed to fall into a class of organs known as muscular hydrostats, organs for which muscle contraction both generates and provides the skeletal support for motion. We propose that the myoarchitecture of the tongue, consisting of intricate arrays of muscular fibers, forms the structural basis for hydrostatic deformation. Owing to the fact that maximal diffusion of the ubiquitous water molecule occurs orthogonal to the short axis of most fiber-type cells, diffusion-weighted magnetic resonance imaging (MRI)measurements can be used to derive information regarding 3-D fiber orientation in situ. Image data obtained in this manner suggest that the tongue consists of a complex juxtaposition of muscle fibers oriented in orthogonal arrays, which provide the basis for multidirectional contraction and isovolemic deformation. From a mechanical perspective, the lingual tissue may be considered as set of continuous coupled units of compression and expansion from which 3-D strain maps may be derived. Such functional data demonstrate that during physiological movements, such as protrusion, bending and swallowing, hydrostatic deformation occurs via synergistic contractions of orthogonally aligned intrinsic and extrinsic fibers. Lingual deformation can thus be represented in terms of models demonstrating that synergistic contraction of fibers at orthogonal or near-orthogonal directions to each other is a necessary condition for volume-conserving deformation. Evidence is provided in support of the supposition that hydrostatic deformation is based on the contraction of orthogonally aligned intramural fibers functioning as a mechanical continuum.
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Affiliation(s)
- Richard J. Gilbert
- Department of Mechanical Engineering, Massachusetts Institute of Technology and the Athinoula A. Martinos Center for Biomedical Imaging,Massachusetts General Hospital, Cambridge, MA 02139, USA
| | - Vitaly J. Napadow
- Department of Mechanical Engineering, Massachusetts Institute of Technology and the Athinoula A. Martinos Center for Biomedical Imaging,Massachusetts General Hospital, Cambridge, MA 02139, USA
| | - Terry A. Gaige
- Department of Mechanical Engineering, Massachusetts Institute of Technology and the Athinoula A. Martinos Center for Biomedical Imaging,Massachusetts General Hospital, Cambridge, MA 02139, USA
| | - Van J. Wedeen
- Department of Mechanical Engineering, Massachusetts Institute of Technology and the Athinoula A. Martinos Center for Biomedical Imaging,Massachusetts General Hospital, Cambridge, MA 02139, USA
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22
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Trimmer B, Issberner J. Kinematics of soft-bodied, legged locomotion in Manduca sexta larvae. THE BIOLOGICAL BULLETIN 2007; 212:130-42. [PMID: 17438205 DOI: 10.2307/25066590] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Caterpillar crawling is distinct from that of worms and molluscs; it consists of a series of steps in different body segments that can be compared to walking and running in animals with stiff skeletons. Using a three-dimensional kinematic analysis of horizontal crawling in Manduca sexta, the tobacco hornworm, we found that the phase of vertical displacement in the posterior segments substantially led changes in horizontal velocity and the segments appeared to pivot around the attached claspers. Both of the motions occur during vertebrate walking. In contrast, vertical displacement and horizontal velocity in the anterior proleg-bearing segments were in phase, as expected for running gaits coupled by elastic storage. We propose that this kinematic similarity to running results from the muscular compression and release of elastic tissues. As evidence in support of this proposal, the compression and extension of each segment were similar to harmonic oscillations in a spring, although changes in velocity were 70 degrees out of phase with displacement, suggesting that the spring was damped. Measurements of segment length within, and across, intersegmental boundaries show that some of these movements were caused by folding of the body wall between segments. These findings demonstrate that caterpillar crawling is not simply the forward progression of a peristaltic wave but has kinetic components that vary between segments. Although these movements can be compared to legged locomotion in animals with stiff skeletons, the underlying mechanisms of caterpillar propulsion, and in particular the contribution of elastic tissues, remain to be discovered.
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Affiliation(s)
- Barry Trimmer
- Department of Biology, Tufts University, Medford, MA 02155, USA.
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23
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Kristan WB, Calabrese RL, Friesen WO. Neuronal control of leech behavior. Prog Neurobiol 2005; 76:279-327. [PMID: 16260077 DOI: 10.1016/j.pneurobio.2005.09.004] [Citation(s) in RCA: 299] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2005] [Revised: 08/23/2005] [Accepted: 09/26/2005] [Indexed: 11/27/2022]
Abstract
The medicinal leech has served as an important experimental preparation for neuroscience research since the late 19th century. Initial anatomical and developmental studies dating back more than 100 years ago were followed by behavioral and electrophysiological investigations in the first half of the 20th century. More recently, intense studies of the neuronal mechanisms underlying leech movements have resulted in detailed descriptions of six behaviors described in this review; namely, heartbeat, local bending, shortening, swimming, crawling, and feeding. Neuroethological studies in leeches are particularly tractable because the CNS is distributed and metameric, with only 400 identifiable, mostly paired neurons in segmental ganglia. An interesting, yet limited, set of discrete movements allows students of leech behavior not only to describe the underlying neuronal circuits, but also interactions among circuits and behaviors. This review provides descriptions of six behaviors including their origins within neuronal circuits, their modification by feedback loops and neuromodulators, and interactions between circuits underlying with these behaviors.
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Affiliation(s)
- William B Kristan
- Section of Neurobiology, Division of Biological Sciences, 9500 Gilman Dr., University of California, San Diego, La Jolla, CA 92093-0357, USA
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24
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Yekutieli Y, Sagiv-Zohar R, Aharonov R, Engel Y, Hochner B, Flash T. Dynamic Model of the Octopus Arm. I. Biomechanics of the Octopus Reaching Movement. J Neurophysiol 2005; 94:1443-58. [PMID: 15829594 DOI: 10.1152/jn.00684.2004] [Citation(s) in RCA: 150] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
The octopus arm requires special motor control schemes because it consists almost entirely of muscles and lacks a rigid skeletal support. Here we present a 2D dynamic model of the octopus arm to explore possible strategies of movement control in this muscular hydrostat. The arm is modeled as a multisegment structure, each segment containing longitudinal and transverse muscles and maintaining a constant volume, a prominent feature of muscular hydrostats. The input to the model is the degree of activation of each of its muscles. The model includes the external forces of gravity, buoyancy, and water drag forces (experimentally estimated here). It also includes the internal forces generated by the arm muscles and the forces responsible for maintaining a constant volume. Using this dynamic model to investigate the octopus reaching movement and to explore the mechanisms of bend propagation that characterize this movement, we found the following. 1) A simple command producing a wave of muscle activation moving at a constant velocity is sufficient to replicate the natural reaching movements with similar kinematic features. 2) The biomechanical mechanism that produces the reaching movement is a stiffening wave of muscle contraction that pushes a bend forward along the arm. 3) The perpendicular drag coefficient for an octopus arm is nearly 50 times larger than the tangential drag coefficient. During a reaching movement, only a small portion of the arm is oriented perpendicular to the direction of movement, thus minimizing the drag force.
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Affiliation(s)
- Yoram Yekutieli
- Department of Neurobiology, The Weizmann Institute of Science, Israel
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25
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Accoto D, Castrataro P, Dario P. Biomechanical analysis of Oligochaeta crawling. J Theor Biol 2004; 230:49-55. [PMID: 15275999 DOI: 10.1016/j.jtbi.2004.03.025] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2004] [Revised: 03/26/2004] [Accepted: 03/28/2004] [Indexed: 10/26/2022]
Abstract
Hydrostatic skeletons, such as that of Oligochaeta and Hirudinea, allow the locomotion of animals with soft segmented bodies. In this paper crawling of Oligochaeta, and in particular that of earthworm (Lumbricus terrestris), is analyzed from a biomechanical point of view, starting from the experimental kinematic description of deformations coupled with a simple friction model. The analysis is able to predict crawling velocity with an error of about 15% with respect to the experimental measured values. Also muscular stress during locomotion is evaluated and found to be compatible with biological values.
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Affiliation(s)
- Dino Accoto
- CRIM Lab., Polo Sant'Anna Valdera, Scuola Superiore Sant'Anna, Viale R. Piaggio, 34, 56025 Pontedera (PI), Italy
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Sutton GP, Macknin JB, Gartman SS, Sunny GP, Beer RD, Crago PE, Neustadter DM, Chiel HJ. Passive hinge forces in the feeding apparatus of Aplysia aid retraction during biting but not during swallowing. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2004; 190:501-14. [PMID: 15098133 DOI: 10.1007/s00359-004-0517-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2003] [Revised: 02/20/2004] [Accepted: 03/11/2004] [Indexed: 10/26/2022]
Abstract
Swallowing and biting responses in the marine mollusk Aplysia are both mediated by a cyclical alternation of protraction and retraction movements of the grasping structure, the radula and underlying odontophore, within the feeding apparatus of the animal, the buccal mass. In vivo observations demonstrate that Aplysia biting is associated with strong protractions and rapid initial retractions, whereas Aplysia swallowing is associated with weaker protractions and slower initial retractions. During biting, the musculature joining the radula/odontophore to the buccal mass (termed the "hinge") is stretched more than in swallowing. To test the hypothesis that stretch of the hinge might contribute to rapid retractions observed in biting, we analyzed the hinge's passive properties. During biting, the hinge is stretched sufficiently to assist retraction. In contrast, during swallowing, the hinge is not stretched sufficiently for its passive forces to assist retraction, because the odontophore's anterior movement is smaller than during biting. A quantitative model demonstrated that steady-state passive forces were sufficient to generate the retraction movements observed during biting. Experimental measures of the relative magnitude of the hinge's active and passive forces at the protraction displacements of biting suggest that passive forces are at least a third of the total force.
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Affiliation(s)
- G P Sutton
- Department of Mechanical and Aerospace Engineering, Case Western Reserve University, Cleveland, OH 44106-7080, USA
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Abstract
Richard Skalak (1923-1997) played a leadership role in the formative decades of the discipline of biomedical engineering through his technical contributions in biomechanics, his educational influence on students, and his service to many developing societies and journals. But always, the distinguishing marks of his involvement with any activity or person were his generosity, respect and tolerance for others, integrity, and curiosity. These very qualities are what first brought him as a traditional engineering trained in engineering mechanics into the young field of biomedical engineering in the 1960s, and they are what led him to new approaches to cellular and molecular engineering, tissue engineering, and orthopedic biomechanics. His technical papers and lectures on blood cell mechanics, pulmonary circulation, dental implants, and tissue growth were models of clarity and often pointed the way to new areas of exploration, while his personal writings offer advice on life, academic organizations, and the pursuit of significant work. He would be deeply appreciative that this first volume of the Annual Review of Biomedical Engineering is dedicated to his memory.
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Affiliation(s)
- T C Skalak
- Department of Biomedical Engineering, University of Virginia, Charlottesville, Virginia 22908, USA.
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Koehl MAR, Quillin KJ, Pell CA. Mechanical Design of Fiber-Wound Hydraulic Skeletons: The Stiffening and Straightening of Embryonic Notochords. ACTA ACUST UNITED AC 2000. [DOI: 10.1093/icb/40.1.28] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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29
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Koehl MAR, Quillin KJ, Pell CA. Mechanical Design of Fiber-Wound Hydraulic Skeletons: The Stiffening and Straightening of Embryonic Notochords1. ACTA ACUST UNITED AC 2000. [DOI: 10.1668/0003-1569(2000)040[0028:mdofwh]2.0.co;2] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Chiel HJ, Beer RD. The brain has a body: adaptive behavior emerges from interactions of nervous system, body and environment. Trends Neurosci 1997; 20:553-7. [PMID: 9416664 DOI: 10.1016/s0166-2236(97)01149-1] [Citation(s) in RCA: 310] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Studies of mechanisms of adaptive behavior generally focus on neurons and circuits. But adaptive behavior also depends on interactions among the nervous system, body and environment: sensory preprocessing and motor post-processing filter inputs to and outputs from the nervous system; co-evolution and co-development of nervous system and periphery create matching and complementarity between them; body structure creates constraints and opportunities for neural control; and continuous feedback between nervous system, body and environment are essential for normal behavior. This broader view of adaptive behavior has been a major underpinning of ecological psychology and has influenced behavior-based robotics. Computational neuroethology, which jointly models neural control and periphery of animals, is a promising methodology for understanding adaptive behavior.
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Affiliation(s)
- H J Chiel
- Dept of Biology, Case Western Reserve University, Cleveland, OH 44106-7080, USA
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