1
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Rodriguez-Zaccaro FD, Lieberman M, Groover A. A systems genetic analysis identifies putative mechanisms and candidate genes regulating vessel traits in poplar wood. FRONTIERS IN PLANT SCIENCE 2024; 15:1375506. [PMID: 38867883 PMCID: PMC11167656 DOI: 10.3389/fpls.2024.1375506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/23/2024] [Accepted: 04/25/2024] [Indexed: 06/14/2024]
Abstract
Wood is the water conducting tissue of tree stems. Like most angiosperm trees, poplar wood contains water-conducting vessel elements whose functional properties affect water transport and growth rates, as well as susceptibility to embolism and hydraulic failure during water stress and drought. Here we used a unique hybrid poplar pedigree carrying genomically characterized chromosomal insertions and deletions to undertake a systems genomics analysis of vessel traits. We assayed gene expression in wood forming tissues from clonal replicates of genotypes covering dosage quantitative trait loci with insertions and deletions, genotypes with extreme vessel trait phenotypes, and control genotypes. A gene co-expression analysis was used to assign genes to modules, which were then used in integrative analyses to identify modules associated with traits, to identify putative molecular and cellular processes associated with each module, and finally to identify candidate genes using multiple criteria including dosage responsiveness. These analyses identified known processes associated with vessel traits including stress response, abscisic acid and cell wall biosynthesis, and in addition identified previously unexplored processes including cell cycle and protein ubiquitination. We discuss our findings relative to component processes contributing to vessel trait variation including signaling, cell cycle, cell expansion, and cell differentiation.
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Affiliation(s)
| | - Meric Lieberman
- University of California Davis, Genome Center, Davis, CA, United States
| | - Andrew Groover
- USDA Forest Service, Pacific Southwest Research Station, Davis, CA, United States
- USDA Forest Service, Northern Research Station, Burlington, VT, United States
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2
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Xu M, Li K, Xue Y, Wang F, Liu Z, Xiao T. Measurement of mass force field driving water refilling of cuttage. Sci Rep 2024; 14:8947. [PMID: 38637680 PMCID: PMC11026483 DOI: 10.1038/s41598-024-59716-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 04/15/2024] [Indexed: 04/20/2024] Open
Abstract
Cuttage is a common plant cultivation method, and the key to its survival is the restoration of water refilling, which remains unclear up to now. We report 3D dynamic imaging of water refilling of cuttage without resorting to any contrast agent. Hydrodynamics of the refilled water flow over time reveals the existence of a unit mass force field with a gradient along the refilling direction, which means that cutting plants also have a gradient force field to drive the recovery of water refilling, as predicted by Cohesion-Tension theory in normal plants. We found that force fields of different functional regions are isolated and independently distributed, which is conducive to ensure the safety of water transmission. At the same time, we also found that there is a so-called "inchworm effect" in the mass force field, which contributes to the force transfer inside the cutting through local force accumulation. Results of this paper demonstrate that the developed method for the measurement of mass force field in-vivo is applicable to help decipher the mechanism of plant water refilling.
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Affiliation(s)
- Mingwei Xu
- Research Center for Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai, 201204, China
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Ke Li
- Research Center for Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai, 201204, China
| | - Yanling Xue
- Research Center for Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai, 201204, China
| | - Feixiang Wang
- Research Center for Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai, 201204, China
| | - Zhixuan Liu
- Hunan Rice Research Institute, Hunan Academy of Agricultural Sciences, Changsha, 410125, China
| | - Tiqiao Xiao
- Research Center for Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai, 201204, China.
- Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, 201800, China.
- University of Chinese Academy of Sciences, Beijing, 100049, China.
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3
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Kalra A, Goel S, Elias AA. Understanding role of roots in plant response to drought: Way forward to climate-resilient crops. THE PLANT GENOME 2024; 17:e20395. [PMID: 37853948 DOI: 10.1002/tpg2.20395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Revised: 07/26/2023] [Accepted: 09/18/2023] [Indexed: 10/20/2023]
Abstract
Drought stress leads to a significant amount of agricultural crop loss. Thus, with changing climatic conditions, it is important to develop resilience measures in agricultural systems against drought stress. Roots play a crucial role in regulating plant development under drought stress. In this review, we have summarized the studies on the role of roots and root-mediated plant responses. We have also discussed the importance of root system architecture (RSA) and the various structural and anatomical changes that it undergoes to increase survival and productivity under drought. Various genes, transcription factors, and quantitative trait loci involved in regulating root growth and development are also discussed. A summarization of various instruments and software that can be used for high-throughput phenotyping in the field is also provided in this review. More comprehensive studies are required to help build a detailed understanding of RSA and associated traits for breeding drought-resilient cultivars.
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Affiliation(s)
- Anmol Kalra
- Department of Botany, University of Delhi, North Campus, Delhi, India
| | - Shailendra Goel
- Department of Botany, University of Delhi, North Campus, Delhi, India
| | - Ani A Elias
- ICFRE - Institute of Forest Genetics and Tree Breeding (ICFRE - IFGTB), Coimbatore, India
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4
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Melián E, Gatica G, Pucheta E. Wood trait trade‐offs in desert plants: A triangular model to understand intra‐ and interspecific variations along an aridity gradient. AUSTRAL ECOL 2023. [DOI: 10.1111/aec.13300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/22/2023]
Affiliation(s)
- Edgardo Melián
- Departamento de Biología, Facultad de Ciencias Exactas, Físicas y Naturales Universidad Nacional de San Juan San Juan Argentina
| | - Gabriel Gatica
- Instituto de Innovación para la Producción Agropecuaria y Desarrollo Sostenible UEDD INTA CONICET Tandil Argentina
| | - Eduardo Pucheta
- Departamento de Biología, Facultad de Ciencias Exactas, Físicas y Naturales Universidad Nacional de San Juan San Juan Argentina
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5
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Rodríguez-Gamir J, Xue J, Meason DF, Clearwater M, Clinton PW, Domec JC. Interclonal variation, coordination, and trade-offs between hydraulic conductance and gas exchange in Pinus radiata: consequences on plant growth and wood density. JOURNAL OF EXPERIMENTAL BOTANY 2021; 72:2419-2433. [PMID: 33337485 DOI: 10.1093/jxb/eraa587] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Accepted: 12/17/2020] [Indexed: 05/24/2023]
Abstract
Stem growth reflects genetic and phenotypic differences within a tree species. The plant hydraulic system regulates the carbon economy, and therefore variations in growth and wood density. A whole-organism perspective, by partitioning the hydraulic system, is crucial for understanding the physical and physiological processes that coordinately mediate plant growth. The aim of this study was to determine whether the relationships and trade-offs between (i) hydraulic traits and their relative contribution to the whole-plant hydraulic system, (ii) plant water transport, (iii) CO2 assimilation, (iv) plant growth, and (v) wood density are revealed at the interclonal level within a variable population of 10 Pinus radiata (D. Don) clones for these characters. We demonstrated a strong coordination between several plant organs regarding their hydraulic efficiency. Hydraulic efficiency, gas exchange, and plant growth were intimately linked. Small reductions in stem wood density were related to a large increase in sapwood hydraulic efficiency, and thus to plant growth. However, stem growth rate was negatively related to wood density. We discuss insights explaining the relationships and trade-offs of the plant traits examined in this study. These insights provide a better understanding of the existing coordination, likely to be dependent on genetics, between the biophysical structure of wood, plant growth, hydraulic partitioning, and physiological plant functions in P. radiata.
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Affiliation(s)
- Juan Rodríguez-Gamir
- Producción Vegetal en zonas tropicales y subtropicales, Instituto Canario de Investigaciones Agrarias (ICIA), Ctra de El boquerón s/n, 38270 San Cristóbal de La Laguna, Tenerife, Canary Islands, Spain
- Forest Systems, Scion, Christchurch, New Zealand
| | - Jianming Xue
- Forest Systems, Scion, Christchurch, New Zealand
| | - Dean F Meason
- Forest Systems, Scion, Private Bag 3020, Rotorua, New Zealand
| | - Michael Clearwater
- Environmental Research Institute, University of Waikato, Private Bag 3105, Hamilton, New Zealand
| | | | - Jean-Christophe Domec
- Bordeaux Sciences Agro, UMR INRA ISPA 1391, Gradignan, France
- Nicholas School of the Environment, Duke University, Durham, NC, USA
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6
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Bonetti S, Breitenstein D, Fatichi S, Domec JC, Or D. Persistent decay of fresh xylem hydraulic conductivity varies with pressure gradient and marks plant responses to injury. PLANT, CELL & ENVIRONMENT 2021; 44:371-386. [PMID: 32964494 DOI: 10.1111/pce.13893] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 09/02/2020] [Accepted: 09/07/2020] [Indexed: 05/29/2023]
Abstract
Defining plant hydraulic traits is central to the quantification of ecohydrological processes ranging from land-atmosphere interactions, to tree mortality and water-carbon budgets. A key plant trait is the xylem specific hydraulic conductivity (Kx ), that describes the plant's vascular system capacity to transport water. While xylem's vessels and tracheids are dead upon maturity, the xylem is neither inert nor deadwood, various components of the sapwood and surrounding tissue remaining alive and functional. Moreover, the established definition of Kx assumes linear relations between water flux and pressure gradient by tacitly considering the xylem as a "passive conduit". Here, we re-examine this notion of an inert xylem by systematically characterizing xylem flow in several woody plants using Kx measurements under constant and cyclic pressure gradients. Results show a temporal and pressure gradient dependence of Kx . Additionally, microscopic features in "living branches" are irreversibly modified upon drying of the xylem, thus differentiating the macroscopic definition of Kx for living and dead xylem. The findings highlight the picture of the xylem as a complex and delicate conductive system whose hydraulic behaviour transcends a passive gradient-based flow. The study sheds new light on xylem conceptualization, conductivity measurement protocols, in situ long-distance water transport and ecosystem modelling.
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Affiliation(s)
- Sara Bonetti
- Institute for Sustainable Resources, Bartlett School of Environment, Energy and Resources, University College London, London, UK
- Soil and Terrestrial Environmental Physics, Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland
| | - Daniel Breitenstein
- Soil and Terrestrial Environmental Physics, Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland
| | - Simone Fatichi
- Institute of Environmental Engineering, ETH Zurich, Zürich, Switzerland
- Department of Civil and Environmental Engineering, National University of Singapore, Singapore
| | - Jean-Christophe Domec
- Bordeaux Sciences Agro, UMR 1391 INRA ISPA, Gradignan Cedex, France
- Nicholas School of the Environment, Duke University, Durham, North Carolina, USA
| | - Dani Or
- Soil and Terrestrial Environmental Physics, Department of Environmental Systems Science, ETH Zürich, Zürich, Switzerland
- Division of Hydrologic Sciences, Desert Research Institute, Reno, Nevada, USA
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Wang Y, Lee J, Werber JR, Elimelech M. Capillary-driven desalination in a synthetic mangrove. SCIENCE ADVANCES 2020; 6:eaax5253. [PMID: 32128394 PMCID: PMC7034996 DOI: 10.1126/sciadv.aax5253] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2019] [Accepted: 11/26/2019] [Indexed: 05/31/2023]
Abstract
According to the cohesion-tension theory, mangrove trees desalinate salty water using highly negative pressure (or tension) that is generated by evaporative capillary forces in mangrove leaves. Here, we demonstrate a synthetic mangrove that mimics the main features of the natural mangrove: capillary pumping (leaves), stable water conduction in highly metastable states (stem), and membrane desalination (root). When using nanoporous membranes as leaves, the maximum osmotic pressures of saline feeds (10 to 30 bar) allowing pure water uptake precisely correspond to expected capillary pressures based on the Young-Laplace equation. Hydrogel-based leaves allow for stable operation and desalination of hypersaline solutions with osmotic pressures approaching 400 bar, fivefold greater than the pressure limits of conventional reverse osmosis. Our findings support the applicability of the cohesion-tension theory to desalination in mangroves, provide a new platform to study plant hydraulics, and create possibilities for engineered membrane separations using large, passively generated capillary pressures.
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Affiliation(s)
- Yunkun Wang
- Shandong Key Laboratory of Water Pollution Control and Resource Reuse, School of Environmental Science and Engineering, Shandong University, Qingdao 266237, China
- Department of Chemical and Environmental Engineering, Yale University, New Haven, CT 06520-8286, USA
| | - Jongho Lee
- Department of Chemical and Environmental Engineering, Yale University, New Haven, CT 06520-8286, USA
- Department of Civil Engineering, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
| | - Jay R. Werber
- Department of Chemical and Environmental Engineering, Yale University, New Haven, CT 06520-8286, USA
- Department of Chemistry, University of Minnesota, Minneapolis, MN 55455-0431, USA
| | - Menachem Elimelech
- Department of Chemical and Environmental Engineering, Yale University, New Haven, CT 06520-8286, USA
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8
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Mrad A, Domec JC, Huang CW, Lens F, Katul G. A network model links wood anatomy to xylem tissue hydraulic behaviour and vulnerability to cavitation. PLANT, CELL & ENVIRONMENT 2018; 41:2718-2730. [PMID: 30071137 DOI: 10.1111/pce.13415] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2018] [Revised: 07/13/2018] [Accepted: 07/25/2018] [Indexed: 05/06/2023]
Abstract
Plant xylem response to drought is routinely represented by a vulnerability curve (VC). Despite the significance of VCs, the connection between anatomy and tissue-level hydraulic response to drought remains a subject of inquiry. We present a numerical model of water flow in flowering plant xylem that combines current knowledge on diffuse-porous anatomy and embolism spread to explore this connection. The model produces xylem networks and uses different parameterizations of intervessel connection vulnerability to embolism spread: the Young-Laplace equation and pit membrane stretching. Its purpose is upscaling processes occurring on the microscopic length scales, such as embolism propagation through pit membranes, to obtain tissue-scale hydraulics. The terminal branch VC of Acer glabrum was successfully reproduced relying only on real observations of xylem tissue anatomy. A sensitivity analysis shows that hydraulic performance and VC shape and location along the water tension axis are heavily dependent on anatomy. The main result is that the linkage between pit-scale and vessel-scale anatomical characters, along with xylem network topology, affects VCs significantly. This work underscores the importance of stepping up research related to the three-dimensional network structure of xylem tissues. The proposed model's versatility makes it an important tool to explore similar future questions.
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Affiliation(s)
- Assaad Mrad
- Nicholas School of the Environment, Duke University, Durham, NC, 27708, USA
| | - Jean-Christophe Domec
- Nicholas School of the Environment, Duke University, Durham, NC, 27708, USA
- Bordeaux Sciences Agro, UMR 1391 INRA-ISPA, 33175, Gradignan Cedex, France
| | - Cheng-Wei Huang
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131-0001
| | - Frederic Lens
- Naturalis Biodiversity Center, Leiden University, P.O. Box 9517, 2300 RA Leiden, The Netherlands
| | - Gabriel Katul
- Nicholas School of the Environment, Duke University, Durham, NC, 27708, USA
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9
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Ndour A, Vadez V, Pradal C, Lucas M. Virtual Plants Need Water Too: Functional-Structural Root System Models in the Context of Drought Tolerance Breeding. FRONTIERS IN PLANT SCIENCE 2017; 8:1577. [PMID: 29018456 PMCID: PMC5622977 DOI: 10.3389/fpls.2017.01577] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Accepted: 08/29/2017] [Indexed: 05/04/2023]
Abstract
Developing a sustainable agricultural model is one of the great challenges of the coming years. The agricultural practices inherited from the Green Revolution of the 1960s show their limits today, and new paradigms need to be explored to counter rising issues such as the multiplication of climate-change related drought episodes. Two such new paradigms are the use of functional-structural plant models to complement and rationalize breeding approaches and a renewed focus on root systems as untapped sources of plant amelioration. Since the late 1980s, numerous functional and structural models of root systems were developed and used to investigate the properties of root systems in soil or lab-conditions. In this review, we focus on the conception and use of such root models in the broader context of research on root-driven drought tolerance, on the basis of root system architecture (RSA) phenotyping. Such models result from the integration of architectural, physiological and environmental data. Here, we consider the different phenotyping techniques allowing for root architectural and physiological study and their limits. We discuss how QTL and breeding studies support the manipulation of RSA as a way to improve drought resistance. We then go over the integration of the generated data within architectural models, how those architectural models can be coupled with functional hydraulic models, and how functional parameters can be measured to feed those models. We then consider the assessment and validation of those hydraulic models through confrontation of simulations to experimentations. Finally, we discuss the up and coming challenges facing root systems functional-structural modeling approaches in the context of breeding.
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Affiliation(s)
- Adama Ndour
- Laboratoire Mixte International Adaptation des Plantes et Microorganismes Associés Aux Stress Environnementaux (LAPSE), Dakar, Senegal
- Laboratoire Commun de Microbiologie (IRD-ISRA-UCAD), Dakar, Senegal
- CERES, IRD, Université de Montpellier, UMR DIADE, Montpellier, France
- Département Maths/Informatique, Faculté des Sciences et Techniques, Université Cheikh Anta Diop, Dakar, Senegal
| | - Vincent Vadez
- International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India
| | - Christophe Pradal
- UMR AGAP, Univiversité de Montpellier, CIRAD, INRA, Inria, Montpellier SupAgro, Montpellier, France
| | - Mikaël Lucas
- Laboratoire Mixte International Adaptation des Plantes et Microorganismes Associés Aux Stress Environnementaux (LAPSE), Dakar, Senegal
- Laboratoire Commun de Microbiologie (IRD-ISRA-UCAD), Dakar, Senegal
- CERES, IRD, Université de Montpellier, UMR DIADE, Montpellier, France
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10
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Venturas MD, Sperry JS, Hacke UG. Plant xylem hydraulics: What we understand, current research, and future challenges. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2017; 59:356-389. [PMID: 28296168 DOI: 10.1111/jipb.12534] [Citation(s) in RCA: 159] [Impact Index Per Article: 22.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2017] [Accepted: 03/09/2017] [Indexed: 05/22/2023]
Abstract
Herein we review the current state-of-the-art of plant hydraulics in the context of plant physiology, ecology, and evolution, focusing on current and future research opportunities. We explain the physics of water transport in plants and the limits of this transport system, highlighting the relationships between xylem structure and function. We describe the great variety of techniques existing for evaluating xylem resistance to cavitation. We address several methodological issues and their connection with current debates on conduit refilling and exponentially shaped vulnerability curves. We analyze the trade-offs existing between water transport safety and efficiency. We also stress how little information is available on molecular biology of cavitation and the potential role of aquaporins in conduit refilling. Finally, we draw attention to how plant hydraulic traits can be used for modeling stomatal responses to environmental variables and climate change, including drought mortality.
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Affiliation(s)
- Martin D Venturas
- Department of Biology, University of Utah, 257 S 1400E, Salt Lake City, UT, 84112, USA
| | - John S Sperry
- Department of Biology, University of Utah, 257 S 1400E, Salt Lake City, UT, 84112, USA
| | - Uwe G Hacke
- Department of Renewable Resources, University of Alberta, Edmonton, AB, T6G 2E3, Canada
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11
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Chieppa J, Chappelka A, Eckhardt L. Effects of tropospheric ozone on loblolly pine seedlings inoculated with root infecting ophiostomatoid fungi. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2015; 207:130-137. [PMID: 26367706 DOI: 10.1016/j.envpol.2015.08.053] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2015] [Revised: 08/28/2015] [Accepted: 08/30/2015] [Indexed: 06/05/2023]
Abstract
Seedlings from four loblolly pine (Pinus taeda L.) families were exposed in open-top chambers to charcoal-filtered air (CF), non-filtered air (NF) or air amended with ozone to 2 times ambient (2×). Two of the families used were selected for their tolerance to fungi associated with Southern Pine Decline while two were selected for their susceptibility. Seedlings were treated with five inoculation treatments: no wound (NW), wound only (W), wound + media (WM), Grosmannia huntii (GH) and Leptographium terebrantis (LT). After 118 days of exposure (AOT40 = 31 ppm-hr(-1) for 2× ozone) seedling volume, dry matter, chlorophyll content, water potential and lesions were measured and analyzed using ANOVA procedures. Our results indicate that seedlings selected for their susceptibility to root infecting ophiostomatoid fungi were also more sensitive to ozone. Overall lesion length was greater on seedlings exposed to elevated ozone concentrations but was not specific to either root infecting ophiostomatoid fungi.
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Affiliation(s)
- Jeff Chieppa
- Forest Health Dynamics Laboratory, School of Forestry and Wildlife Sciences, Auburn University, Auburn, AL, USA.
| | - Art Chappelka
- School of Forestry and Wildlife Sciences, Auburn University, Auburn, AL, USA
| | - Lori Eckhardt
- Forest Health Dynamics Laboratory, School of Forestry and Wildlife Sciences, Auburn University, Auburn, AL, USA
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12
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Achar D, Awati MG, Udayakumar M, Prasad TG. Identification of Putative Molecular Markers Associated with Root Traits in Coffea canephora Pierre ex Froehner. Mol Biol Int 2015; 2015:532386. [PMID: 25821599 PMCID: PMC4363682 DOI: 10.1155/2015/532386] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2014] [Accepted: 01/11/2015] [Indexed: 11/18/2022] Open
Abstract
Coffea canephora exhibit poor root system and are very sensitive to drought stress that affects growth and production. Deeper root system has been largely empirical as better avoidance to soil water limitation in drought condition. The present study aimed to identify molecular markers linked to high root types in Coffea canephora using molecular markers. Contrasting parents, L1 valley with low root and S.3334 with high root type, were crossed, and 134 F1 individuals were phenotyped for root and associated physiological traits (29 traits) and genotyped with 41 of the 320 RAPD and 9 of the 55 SSR polymorphic primers. Single marker analysis was deployed for detecting the association of markers linked to root associated traits by SAS software. There were 13 putative RAPD markers associated with root traits such as root length, secondary roots, root dry weight, and root to shoot ratio, in which root length associated marker OPS1850 showed high phenotypic variance of 6.86%. Two microsatellite markers linked to root length (CPCM13400) and root to shoot ratio (CM211300). Besides, 25 markers were associated with more than one trait and few of the markers were associated with positively related physiological traits and can be used in marker assisted trait selection.
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Affiliation(s)
- Devaraja Achar
- Department of Crop Physiology, University of Agriculture Sciences, Gandhi Krishi Vignana Ken-dra, Bangalore, Karnataka 560 065, India
| | - Mallikarjuana G. Awati
- Division of Plant Physiology, Central Coffee Research Institute, Balehonnur, Chikmagalur District, Karnataka 577 112, India
| | - M. Udayakumar
- Department of Crop Physiology, University of Agriculture Sciences, Gandhi Krishi Vignana Ken-dra, Bangalore, Karnataka 560 065, India
| | - T. G. Prasad
- Department of Crop Physiology, University of Agriculture Sciences, Gandhi Krishi Vignana Ken-dra, Bangalore, Karnataka 560 065, India
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13
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Bernacchi CJ, VanLoocke A. Terrestrial ecosystems in a changing environment: a dominant role for water. ANNUAL REVIEW OF PLANT BIOLOGY 2015; 66:599-622. [PMID: 25621516 DOI: 10.1146/annurev-arplant-043014-114834] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Transpiration--the movement of water from the soil, through plants, and into the atmosphere--is the dominant water flux from the earth's terrestrial surface. The evolution of vascular plants, while increasing terrestrial primary productivity, led to higher transpiration rates and widespread alterations in the global climate system. Similarly, anthropogenic influences on transpiration rates are already influencing terrestrial hydrologic cycles, with an even greater potential for changes lying ahead. Intricate linkages among anthropogenic activities, terrestrial productivity, the hydrologic cycle, and global demand for ecosystem services will lead to increased pressures on ecosystem water demands. Here, we focus on identifying the key drivers of ecosystem water use as they relate to plant physiological function, the role of predicted global changes in ecosystem water uses, trade-offs between ecosystem water use and carbon uptake, and knowledge gaps.
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Affiliation(s)
- Carl J Bernacchi
- Global Change and Photosynthesis Research Unit, USDA-ARS, and Department of Plant Biology, University of Illinois, Urbana, Illinois 61801;
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14
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Loss of whole-tree hydraulic conductance during severe drought and multi-year forest die-off. Oecologia 2014; 175:11-23. [DOI: 10.1007/s00442-013-2875-5] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2013] [Accepted: 12/20/2013] [Indexed: 10/25/2022]
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15
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Wurzburger N, Ford Miniat C. Drought enhances symbiotic dinitrogen fixation and competitive ability of a temperate forest tree. Oecologia 2013; 174:1117-26. [DOI: 10.1007/s00442-013-2851-0] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2013] [Accepted: 11/26/2013] [Indexed: 10/25/2022]
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16
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Lucas WJ, Groover A, Lichtenberger R, Furuta K, Yadav SR, Helariutta Y, He XQ, Fukuda H, Kang J, Brady SM, Patrick JW, Sperry J, Yoshida A, López-Millán AF, Grusak MA, Kachroo P. The plant vascular system: evolution, development and functions. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2013; 55:294-388. [PMID: 23462277 DOI: 10.1111/jipb.12041] [Citation(s) in RCA: 396] [Impact Index Per Article: 36.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
The emergence of the tracheophyte-based vascular system of land plants had major impacts on the evolution of terrestrial biology, in general, through its role in facilitating the development of plants with increased stature, photosynthetic output, and ability to colonize a greatly expanded range of environmental habitats. Recently, considerable progress has been made in terms of our understanding of the developmental and physiological programs involved in the formation and function of the plant vascular system. In this review, we first examine the evolutionary events that gave rise to the tracheophytes, followed by analysis of the genetic and hormonal networks that cooperate to orchestrate vascular development in the gymnosperms and angiosperms. The two essential functions performed by the vascular system, namely the delivery of resources (water, essential mineral nutrients, sugars and amino acids) to the various plant organs and provision of mechanical support are next discussed. Here, we focus on critical questions relating to structural and physiological properties controlling the delivery of material through the xylem and phloem. Recent discoveries into the role of the vascular system as an effective long-distance communication system are next assessed in terms of the coordination of developmental, physiological and defense-related processes, at the whole-plant level. A concerted effort has been made to integrate all these new findings into a comprehensive picture of the state-of-the-art in the area of plant vascular biology. Finally, areas important for future research are highlighted in terms of their likely contribution both to basic knowledge and applications to primary industry.
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Affiliation(s)
- William J Lucas
- Department of Plant Biology, College of Biological Sciences, University of California, Davis, CA 95616, USA.
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