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Kruse S, Türkowsky D, Birkigt J, Matturro B, Franke S, Jehmlich N, von Bergen M, Westermann M, Rossetti S, Nijenhuis I, Adrian L, Diekert G, Goris T. Interspecies metabolite transfer and aggregate formation in a co-culture of Dehalococcoides and Sulfurospirillum dehalogenating tetrachloroethene to ethene. THE ISME JOURNAL 2021; 15:1794-1809. [PMID: 33479489 PMCID: PMC8163811 DOI: 10.1038/s41396-020-00887-6] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 12/04/2020] [Accepted: 12/16/2020] [Indexed: 01/30/2023]
Abstract
Microbial communities involving dehalogenating bacteria assist in bioremediation of areas contaminated with halocarbons. To understand molecular interactions between dehalogenating bacteria, we co-cultured Sulfurospirillum multivorans, dechlorinating tetrachloroethene (PCE) to cis-1,2-dichloroethene (cDCE), and Dehalococcoides mccartyi strains BTF08 or 195, dehalogenating PCE to ethene. The co-cultures were cultivated with lactate as electron donor. In co-cultures, the bacterial cells formed aggregates and D. mccartyi established an unusual, barrel-like morphology. An extracellular matrix surrounding bacterial cells in the aggregates enhanced cell-to-cell contact. PCE was dehalogenated to ethene at least three times faster in the co-culture. The dehalogenation was carried out via PceA of S. multivorans, and PteA (a recently described PCE dehalogenase) and VcrA of D. mccartyi BTF08, as supported by protein abundance. The co-culture was not dependent on exogenous hydrogen and acetate, suggesting a syntrophic relationship in which the obligate hydrogen consumer D. mccartyi consumes hydrogen and acetate produced by S. multivorans. The cobamide cofactor of the reductive dehalogenase-mandatory for D. mccartyi-was also produced by S. multivorans. D. mccartyi strain 195 dechlorinated cDCE in the presence of norpseudo-B12 produced by S. multivorans, but D. mccartyi strain BTF08 depended on an exogenous lower cobamide ligand. This observation is important for bioremediation, since cofactor supply in the environment might be a limiting factor for PCE dehalogenation to ethene, described for D. mccartyi exclusively. The findings from this co-culture give new insights into aggregate formation and the physiology of D. mccartyi within a bacterial community.
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Affiliation(s)
- Stefan Kruse
- grid.9613.d0000 0001 1939 2794Department of Applied and Ecological Microbiology, Institute of Microbiology, Friedrich Schiller University, Jena, Germany
| | - Dominique Türkowsky
- grid.7492.80000 0004 0492 3830Department Molecular Systems Biology, Helmholtz Centre for Environmental Research – UFZ, Leipzig, Germany
| | - Jan Birkigt
- grid.7492.80000 0004 0492 3830Department of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research – UFZ, Leipzig, Germany
| | - Bruna Matturro
- grid.435629.f0000 0004 1755 3971Water Research Institute, IRSA-CNR, Monterotondo, Rome, Italy
| | - Steffi Franke
- grid.7492.80000 0004 0492 3830Department of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research – UFZ, Leipzig, Germany ,Present Address: Eurofins Institute Dr. Appelt Leipzig, Leipzig, Germany
| | - Nico Jehmlich
- grid.7492.80000 0004 0492 3830Department Molecular Systems Biology, Helmholtz Centre for Environmental Research – UFZ, Leipzig, Germany
| | - Martin von Bergen
- grid.7492.80000 0004 0492 3830Department Molecular Systems Biology, Helmholtz Centre for Environmental Research – UFZ, Leipzig, Germany ,grid.9647.c0000 0004 7669 9786Institute of Biochemistry, Faculty of Life Sciences, University of Leipzig, Leipzig, Germany
| | - Martin Westermann
- grid.275559.90000 0000 8517 6224Center for Electron Microscopy of the University Hospital Jena, Jena, Germany
| | - Simona Rossetti
- grid.435629.f0000 0004 1755 3971Water Research Institute, IRSA-CNR, Monterotondo, Rome, Italy
| | - Ivonne Nijenhuis
- grid.7492.80000 0004 0492 3830Department of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research – UFZ, Leipzig, Germany
| | - Lorenz Adrian
- grid.6734.60000 0001 2292 8254Chair of Geobiotechnology, Technische Universität Berlin, Berlin, Germany ,grid.7492.80000 0004 0492 3830Department of Environmental Biotechnology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany
| | - Gabriele Diekert
- grid.9613.d0000 0001 1939 2794Department of Applied and Ecological Microbiology, Institute of Microbiology, Friedrich Schiller University, Jena, Germany
| | - Tobias Goris
- grid.9613.d0000 0001 1939 2794Department of Applied and Ecological Microbiology, Institute of Microbiology, Friedrich Schiller University, Jena, Germany ,grid.418213.d0000 0004 0390 0098Present Address: German Institute of Human Nutrition, Department Molecular Toxicology, Research Group Intestinal Microbiology, Potsdam-Rehbrücke, Nuthetal, Germany
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Wang H, Qi B, Jiang X, Jiang Y, Yang H, Xiao Y, Jiang N, Deng L, Wang W. Microalgal interstrains differences in algal-bacterial biofloc formation during liquid digestate treatment. BIORESOURCE TECHNOLOGY 2019; 289:121741. [PMID: 31323710 DOI: 10.1016/j.biortech.2019.121741] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2019] [Revised: 06/28/2019] [Accepted: 06/29/2019] [Indexed: 06/10/2023]
Abstract
In this study, the effect of microalgal strains on the formation of algal-bacterial biofloc was investigated in liquid digestate pretreated by a sequencing batch reactor (SBR), which loaded much aerobic bacteria from activated sludge. Six microalgal strains resulted in three cases: no-bioflocculation (Scenedesmus obliquus and Botryococcus braunii), optimal-bioflocculation with high flocculation activity and good growth (Chlorella sp. BWY-1, Haematococcus pluvialis and Dictyosphaerium ehnenbergianum) and over-bioflocculation with high flocculation activity and bad growth (Chlorella vulgaris). Chlorella sp. BWY-1 provided a better level of flocculation activity and growth. Polysaccharides and proteins were present in EPS of algal-bacterial biofloc, and their distribution was confirmed by staining with alcian blue and fluorescein isothiocyanate (FITC).
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Affiliation(s)
- Hong Wang
- Key Laboratory of Development and Application of Rural Renewable Energy, Biogas Institute of Ministry of Agriculture, Chengdu 610041, PR China
| | - Bufan Qi
- College of Pharmacy and Biological Engineering, Chengdu University, No. 2205, Cheng Luo Road, Chengdu 610106, PR China
| | - Xiaomei Jiang
- Key Laboratory of Development and Application of Rural Renewable Energy, Biogas Institute of Ministry of Agriculture, Chengdu 610041, PR China
| | - Yiqi Jiang
- Environmental Science & Engineering Research Center, Shenzhen Graduate School, Harbin Institute of Technology, Shenzhen 518055, PR China
| | - Han Yang
- Key Laboratory of Development and Application of Rural Renewable Energy, Biogas Institute of Ministry of Agriculture, Chengdu 610041, PR China
| | - Youqian Xiao
- Key Laboratory of Development and Application of Rural Renewable Energy, Biogas Institute of Ministry of Agriculture, Chengdu 610041, PR China
| | - Na Jiang
- Key Laboratory of Development and Application of Rural Renewable Energy, Biogas Institute of Ministry of Agriculture, Chengdu 610041, PR China
| | - Liangwei Deng
- Key Laboratory of Development and Application of Rural Renewable Energy, Biogas Institute of Ministry of Agriculture, Chengdu 610041, PR China
| | - Wenguo Wang
- Key Laboratory of Development and Application of Rural Renewable Energy, Biogas Institute of Ministry of Agriculture, Chengdu 610041, PR China.
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Boleij M, Pabst M, Neu TR, van Loosdrecht MCM, Lin Y. Identification of Glycoproteins Isolated from Extracellular Polymeric Substances of Full-Scale Anammox Granular Sludge. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2018; 52:13127-13135. [PMID: 30335377 PMCID: PMC6256349 DOI: 10.1021/acs.est.8b03180] [Citation(s) in RCA: 73] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Revised: 10/11/2018] [Accepted: 10/18/2018] [Indexed: 05/22/2023]
Abstract
ANaerobic AMMonium OXidation (anammox) is an established process for efficient nitrogen removal from wastewater, relying on anammox bacteria to form stable biofilms or granules. To understand the formation, structure, and stability of anammox granules, it is important to determine the composition of the extracellular polymeric substances (EPS). The aim of this research was to elucidate the nature of the proteins, which are the major fraction of the EPS and were suspected to be glycosylated. EPS were extracted from full-scale anammox granular sludge, dominated by " Candidatus Brocadia", and subjected to denaturing polyacrylamide gel electrophoresis. By further analysis with mass spectrometry, a high abundant glycoprotein, carrying a heterogeneous O-glycan structure, was identified. The potential glycosylation sequence motif was identical to that proposed for the surface layer protein of " Candidatus Kuenenia stuttgartiensis". The heavily glycosylated protein forms a large fraction of the EPS and was also located by lectin staining. Therefore, we hypothesize an important role of glycoproteins in the structuring of anammox granules, comparable to the importance of glycans in the extracellular matrix of multicellular organisms. Furthermore, different glycoconjugates may have distinct roles in the matrix of granular sludge, which requires more in-depth characterization of different glycoconjugates in future EPS studies.
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Affiliation(s)
- Marissa Boleij
- Department of Biotechnology , Delft University of Technology , van der Maasweg 9 , 2629 HZ , Delft , The Netherlands
| | - Martin Pabst
- Department of Biotechnology , Delft University of Technology , van der Maasweg 9 , 2629 HZ , Delft , The Netherlands
| | - Thomas R Neu
- Department of River Ecology , Helmholtz Centre for Environmental Research - UFZ , Brueckstrasse 3A , 39114 Magdeburg , Germany
| | - Mark C M van Loosdrecht
- Department of Biotechnology , Delft University of Technology , van der Maasweg 9 , 2629 HZ , Delft , The Netherlands
| | - Yuemei Lin
- Department of Biotechnology , Delft University of Technology , van der Maasweg 9 , 2629 HZ , Delft , The Netherlands
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Bozorg A, Gates ID, Sen A. Impact of biofilm on bacterial transport and deposition in porous media. JOURNAL OF CONTAMINANT HYDROLOGY 2015; 183:109-120. [PMID: 26583740 DOI: 10.1016/j.jconhyd.2015.10.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2015] [Revised: 10/14/2015] [Accepted: 10/23/2015] [Indexed: 06/05/2023]
Abstract
Laboratory scale experiments were conducted to obtain insights into factors that influence bacterial transport and deposition in porous media. According to colloidal filtration theory, the removal efficiency of a filter medium is characterized by two main factors: collision efficiency and sticking efficiency. In the case of bacterial transport in porous media, bacteria attached to a solid surface can establish a thin layer of biofilm by excreting extracellular polymeric substances which can significantly influence both of these factors in a porous medium, and thus, affect the overall removal efficiency of the filter medium. However, such polymeric interactions in bacterial adhesion are not well understood and a method to calculate polymeric interactions is not yet available. Here, to determine how the migration of bacteria flowing within a porous medium is affected by the presence of surface-associated extracellular polymeric substances previously produced and deposited by the same bacterial species, a commonly used colloidal filtration model was applied to study transport and deposition of Pseudomonas fluorescens in small-scale columns packed with clean and biofilm coated glass beads. Bacterial recoveries were monitored in column effluents and used to quantify biofilm interactions and sticking efficiencies of the biofilm coated packed-beds. The results indicated that, under identical hydraulic conditions, the sticking efficiencies in packed-beds were improved consistently by 36% when covered by biofilm.
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Affiliation(s)
- Ali Bozorg
- Department of Chemical and Petroleum Engineering, Schulich School of Engineering, University of Calgary, 2500 University Drive NW, Calgary, Alberta T2N 1N4, Canada
| | - Ian D Gates
- Department of Chemical and Petroleum Engineering, Schulich School of Engineering, University of Calgary, 2500 University Drive NW, Calgary, Alberta T2N 1N4, Canada
| | - Arindom Sen
- Department of Chemical and Petroleum Engineering, Schulich School of Engineering, University of Calgary, 2500 University Drive NW, Calgary, Alberta T2N 1N4, Canada.
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Lv Y, Chen Y, Song W, Hu Y. Enhanced selection of micro-aerobic pentachlorophenol degrading granular sludge. JOURNAL OF HAZARDOUS MATERIALS 2014; 280:134-142. [PMID: 25151236 DOI: 10.1016/j.jhazmat.2014.07.067] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2014] [Revised: 07/22/2014] [Accepted: 07/23/2014] [Indexed: 06/03/2023]
Abstract
Column-type combined reactors were designed to cultivate micro-aerobic pentachlorophenol (PCP) degrading granular sludge under oxygen-limited conditions (0.1-0.2 mgL(-1)) over 39-day experimental period. Micro-aerobic granular had both anaerobic activity (SMA: 2.34 mMCH4/hg VSS) and aerobic activity (SOUR: 2.21 mMO2/hg VSS). Metabolite analysis results revealed that PCP was sequentially dechlorinated to TCP, DCP, and eventually to MCP. Methanogens were not directly involved in the dechlorination of PCP, but might played a vital role in stabilizing the overall structure of the granule sludge. For Eubacteria, the Shannon Index (2.09 in inoculated granular sludge) increased both in micro-aerobic granular sludge (2.61) and PCP-degradation granular sludge (2.55). However, for Archaea, it decreased from 2.53 to 1.85 and 1.84, respectively. Although the Shannon Index demonstrated slight difference between micro-aerobic granular sludge and PCP-degradation granular sludge, the Principal Component Analysis (PCA) indicated obvious variance of the microbial composition, revealing significant effect of micro-aerobic condition and PCP on microbial community. Furthermore, nucleotide sequencing indicated that the main microorganisms for PCP degradation might be related to Actinobacterium and Sphingomonas. These results provided insights into situ bioremediation of environments contaminated by PCP and had practical implications for the strategies of PCP degradation.
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Affiliation(s)
- Yuancai Lv
- State Key Laboratory of Pulp and Paper Engineering, College of Light Industry and Food Science, South China University of Technology, Guangzhou 510640, China.
| | - Yuancai Chen
- State Key Laboratory of Pulp and Paper Engineering, College of Light Industry and Food Science, South China University of Technology, Guangzhou 510640, China; Ministry of Education Key Laboratory of Pollution Control and Ecological Remediation for Industrial Agglomeration Area, College of Environment and Energy, South China University of Technology, Guangzhou 510006, China.
| | - Wenzhe Song
- Ministry of Education Key Laboratory of Pollution Control and Ecological Remediation for Industrial Agglomeration Area, College of Environment and Energy, South China University of Technology, Guangzhou 510006, China.
| | - Yongyou Hu
- State Key Laboratory of Pulp and Paper Engineering, College of Light Industry and Food Science, South China University of Technology, Guangzhou 510640, China; Ministry of Education Key Laboratory of Pollution Control and Ecological Remediation for Industrial Agglomeration Area, College of Environment and Energy, South China University of Technology, Guangzhou 510006, China.
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6
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Kosaka T, Toh H, Fujiyama A, Sakaki Y, Watanabe K, Meng XY, Hanada S, Toyoda A. Physiological and genetic basis for self-aggregation of a thermophilic hydrogenotrophic methanogen, Methanothermobacter strain CaT2. ENVIRONMENTAL MICROBIOLOGY REPORTS 2014; 6:268-277. [PMID: 24983531 DOI: 10.1111/1758-2229.12128] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2013] [Accepted: 11/05/2013] [Indexed: 06/03/2023]
Abstract
Several thermophilic hydrogenotrophic methanogens naturally aggregate in their habitats in association with hydrogen-producing bacteria for efficient transfer of the methane fermentation intermediates to produce methane. However, physiology of aggregation and the identity of aggregation-specific genes remain to be elucidated. Here, we isolated and characterized a hydrogen and formate-utilizing Methanothermobacter sp. CaT2 that is capable of self-aggregation and utilizing formate. CaT2 produced methane from propionate oxidation in association with a syntrophic propionate-oxidizing bacterium faster than other methanogens, including Methanothermobacter thermautotrophicus ΔH and Methanothermobacter thermautotrophicus Z-245. CaT2 also aggregated throughout the culture period and was coated with polysaccharides, which was not found on the ΔH and Z-245 cells. Sugar content (particularly of rhamnose and mannose) was also higher in the CaT2 cells than the ΔH and Z-245 cells. Comparative genomic analysis of CaT2 indicated that four candidate genes, all of which encode glycosyltransferase, were involved in aggregation of CaT2. Transcriptional analysis showed that one glycosyltransferase gene was expressed at relatively high levels under normal growth conditions. The polysaccharide layer on the CaT2 cell surface, which is probably assembled by these glycosyltransferases, may be involved in cell aggregation.
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Affiliation(s)
- Tomoyuki Kosaka
- Department of Biological Chemistry, Faculty of Agriculture, Yamaguchi University, 1677-1 Yoshida, Yamaguchi, 753-8515, Japan; PRESTO, Japan Science and Technology Agency (JST), Kawaguchi, Saitama, 332-0012, Japan; Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, 305-8566, Japan
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7
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Chen TT, Zheng P, Shen LD, Tang CJ, Ding S. Dispersal and control of anammox granular sludge at high substrate concentrations. BIOTECHNOL BIOPROC E 2012. [DOI: 10.1007/s12257-012-0086-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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8
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Bassin JP, Kleerebezem R, Rosado AS, van Loosdrecht MCM, Dezotti M. Effect of different operational conditions on biofilm development, nitrification, and nitrifying microbial population in moving-bed biofilm reactors. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2012; 46:1546-1555. [PMID: 22243035 DOI: 10.1021/es203356z] [Citation(s) in RCA: 107] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
In this study, the effect of different operational conditions on biofilm development and nitrification in three moving-bed biofilm reactors (MBBRs) was investigated: two reactors were operated in a continuously fed regime and one in sequencing-batch mode. The presence of organic carbon reduced the time required to form stable nitrifying biofilms. Subsequent stepwise reduction of influent COD caused a decrease in total polysaccharide and protein content, which was accompanied by a fragmentation of the biofilm, as shown by scanning electron microscopy, and by an enrichment of the biofilm for nitrifiers, as observed by fluorescent in situ hybridization (FISH) analysis. Polysaccharide and protein concentrations proved to be good indicators of biomass development and detachment in MBBR systems. Ammonium- and nitrite-oxidizing bacteria activities were affected when a pulse feeding of 4 g of NH(4)-N/(m(2)·day) was applied. Free nitrous acid and free ammonia were likely the inhibitors for ammonium- and nitrite-oxidizing bacteria.
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Affiliation(s)
- J P Bassin
- Department of Biotechnology, Delft University of Technology, Delft, The Netherlands.
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9
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Bhattacharyya D, Singh KS. Morphology of bacterial granules developed in an upflow anaerobic acid reactor. ENVIRONMENTAL TECHNOLOGY 2011; 32:1435-1442. [PMID: 22329133 DOI: 10.1080/09593330.2010.538931] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Macro- and micro-structures of granules, developed in an upflow anaerobic acid reactor, were examined by light and electron microscopy. Every granule was found to be white, soft and non-spherical and had an open cavity at the centre. Scanning electron microscopy showed that the granules were composed of rod-shaped bacteria, of different thicknesses and lengths, arranged in three distinct layers within the granules. Transmission electron microscopic analysis of ultra-thin sections of granules, stained with Ruthenium Red, revealed the presence of extra-cellular polymeric materials around the cells. Gram staining tests confirmed the presence of both Gram-positive and Gram-negative bacteria in the granules. The intertwined nature of the bacterial arrangement in the granules and the extracellular polymeric substance that encapsulated the cell colonies contributed to the structural stability of the granules.
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Affiliation(s)
- Debraj Bhattacharyya
- Department of Civil Engineering, University of New Brunswick, Fredericton, Canada.
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10
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Shimada T, Zilles J, Raskin L, Morgenroth E. Carbohydrate storage in anaerobic sequencing batch reactors. WATER RESEARCH 2007; 41:4721-9. [PMID: 17640700 DOI: 10.1016/j.watres.2007.06.052] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2006] [Revised: 05/09/2007] [Accepted: 06/20/2007] [Indexed: 05/16/2023]
Abstract
This study demonstrates the accumulation and degradation of trehalose as a storage compound in a glucose-fed anaerobic sequencing batch reactor (ASBR). One hour after substrate addition, only 40% of the added organic matter (as chemical oxygen demand, COD) was accounted for by the cumulative methane production and soluble COD remaining in the reactor. All influent COD was accounted for by methane and biomass production by the end of the 24-h ASBR cycle. These dynamics can be explained by the production of an intracellular storage product. Total carbohydrate analysis showed that 26% of the glucose added to the reactor transiently accumulated within the biomass. Based on (13)C-nuclear magnetic resonance (NMR) analysis, trehalose (alpha-D-glucopyranosyl-(D-glucopyranoside)) was identified as the main carbohydrate produced. Mathematical modeling was performed and the IWA Anaerobic Digestion Model No. 1 (ADM1) was modified to include microbial storage. The modified model adequately described the ASBR dynamics during a 24-h cycle.
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Affiliation(s)
- Toshio Shimada
- University of Illinois, Urbana-Champaign, 205 N. Mathews Ave., IL 61801, USA
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Weber SD, Ludwig W, Schleifer KH, Fried J. Microbial composition and structure of aerobic granular sewage biofilms. Appl Environ Microbiol 2007; 73:6233-40. [PMID: 17704280 PMCID: PMC2075015 DOI: 10.1128/aem.01002-07] [Citation(s) in RCA: 94] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Aerobic activated sludge granules are dense, spherical biofilms which can strongly improve purification efficiency and sludge settling in wastewater treatment processes. In this study, the structure and development of different granule types were analyzed. Biofilm samples originated from lab-scale sequencing batch reactors which were operated with malthouse, brewery, and artificial wastewater. Scanning electron microscopy, light microscopy, and confocal laser scanning microscopy together with fluorescence in situ hybridization (FISH) allowed insights into the structure of these biofilms. Microscopic observation revealed that granules consist of bacteria, extracellular polymeric substances (EPS), protozoa and, in some cases, fungi. The biofilm development, starting from an activated sludge floc up to a mature granule, follows three phases. During phase 1, stalked ciliated protozoa of the subclass Peritrichia, e.g., Epistylis spp., settle on activated sludge flocs and build tree-like colonies. The stalks are subsequently colonized by bacteria. During phase 2, the ciliates become completely overgrown by bacteria and die. Thereby, the cellular remnants of ciliates act like a backbone for granule formation. During phase 3, smooth, compact granules are formed which serve as a new substratum for unstalked ciliate swarmers settling on granule surfaces. These mature granules comprise a dense core zone containing bacterial cells and EPS and a loosely structured fringe zone consisting of either ciliates and bacteria or fungi and bacteria. Since granules can grow to a size of up to several millimeters in diameter, we developed and applied a modified FISH protocol for the study of cryosectioned biofilms. This protocol allows the simultaneous detection of bacteria, ciliates, and fungi in and on granules.
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Affiliation(s)
- S D Weber
- Lehrstuhl für Mikrobiologie, Technische Universität München, Am Hochanger 4, 85350 Freising, Germany.
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van Hullebusch ED, Gieteling J, Van Daele W, Defrancq J, Lens PN. Effect of sulfate and iron on physico-chemical characteristics of anaerobic granular sludge. Biochem Eng J 2007. [DOI: 10.1016/j.bej.2006.10.017] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Díaz EE, Stams AJM, Amils R, Sanz JL. Phenotypic properties and microbial diversity of methanogenic granules from a full-scale upflow anaerobic sludge bed reactor treating brewery wastewater. Appl Environ Microbiol 2006; 72:4942-9. [PMID: 16820491 PMCID: PMC1489364 DOI: 10.1128/aem.02985-05] [Citation(s) in RCA: 123] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Methanogenic granules from an anaerobic bioreactor that treated wastewater of a beer brewery consisted of different morphological types of granules. In this study, the microbial compositions of the different granules were analyzed by molecular microbiological techniques: cloning, denaturing gradient gel electrophoresis and fluorescent in situ hybridization (FISH), and scanning and transmission electron microscopy. We propose here that the different types of granules reflect the different stages in the life cycle of granules. Young granules were small, black, and compact and harbored active cells. Gray granules were the most abundant granules. These granules have a multilayer structure with channels and void areas. The core was composed of dead or starving cells with low activity. The brown granules, which were the largest granules, showed a loose and amorphous structure with big channels that resulted in fractured zones and corresponded to the older granules. Firmicutes (as determined by FISH) and Nitrospira and Deferribacteres (as determined by cloning and sequencing) were the predominant Bacteria. Remarkably, Firmicutes could not be detected in the brown granules. The methanogenic Archaea identified were Methanosaeta concilii (70 to 90% by FISH and cloning), Methanosarcina mazei, and Methanospirillum spp. The phenotypic appearance of the granules reflected the physiological condition of the granules. This may be valuable to easily select appropriate seed sludges to start up other reactors.
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Affiliation(s)
- Emiliano E Díaz
- Department of Molecular Biology, Autonoma University of Madrid, 28049 Madrid, Spain
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14
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Ishii S, Kosaka T, Hori K, Hotta Y, Watanabe K. Coaggregation facilitates interspecies hydrogen transfer between Pelotomaculum thermopropionicum and Methanothermobacter thermautotrophicus. Appl Environ Microbiol 2006; 71:7838-45. [PMID: 16332758 PMCID: PMC1317437 DOI: 10.1128/aem.71.12.7838-7845.2005] [Citation(s) in RCA: 178] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
A thermophilic syntrophic bacterium, Pelotomaculum thermopropionicum strain SI, was grown in a monoculture or coculture with a hydrogenotrophic methanogen, Methanothermobacter thermautotrophicus strain DeltaH. Microscopic observation revealed that cells of each organism were dispersed in a monoculture independent of the growth substrate. In a coculture, however, these organisms coaggregated to different degrees depending on the substrate; namely, a large fraction of the cells coaggregated when they were grown on propionate, but relatively few cells coaggregated when they were grown on ethanol or 1-propanol. Field emission-scanning electron microscopy revealed that flagellum-like filaments of SI cells played a role in making contact with DeltaH cells. Microscopic observation of aggregates also showed that extracellular polymeric substance-like structures were present in intercellular spaces. In order to evaluate the importance of coaggregation for syntrophic propionate oxidation, allowable average distances between SI and DeltaH cells for accomplishing efficient interspecies hydrogen transfer were calculated by using Fick's diffusion law. The allowable distance for syntrophic propionate oxidation was estimated to be approximately 2 mum, while the allowable distances for ethanol and propanol oxidation were 16 mum and 32 mum, respectively. Considering that the mean cell-to-cell distance in the randomly dispersed culture was approximately 30 mum (at a concentration in the mid-exponential growth phase of the coculture of 5 x 10(7) cells ml(-1)), it is obvious that close physical contact of these organisms by coaggregation is indispensable for efficient syntrophic propionate oxidation.
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Affiliation(s)
- Shun'ichi Ishii
- Marine Biotechnology Institute, Heita, Kamaishi, Iwate 026-0001, Japan
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McSwain BS, Irvine RL, Hausner M, Wilderer PA. Composition and distribution of extracellular polymeric substances in aerobic flocs and granular sludge. Appl Environ Microbiol 2005; 71:1051-7. [PMID: 15691965 PMCID: PMC546788 DOI: 10.1128/aem.71.2.1051-1057.2005] [Citation(s) in RCA: 382] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2004] [Accepted: 08/27/2004] [Indexed: 11/20/2022] Open
Abstract
Extracellular polymeric substances (EPS) were quantified in flocculent and aerobic granular sludge developed in two sequencing batch reactors with the same shear force but different settling times. Several EPS extraction methods were compared to investigate how different methods affect EPS chemical characterization, and fluorescent stains were used to visualize EPS in intact samples and 20-mum cryosections. Reactor 1 (operated with a 10-min settle) enriched predominantly flocculent sludge with a sludge volume index (SVI) of 120 +/- 12 ml g(-1), and reactor 2 (2-min settle time) formed compact aerobic granules with an SVI of 50 +/- 2 ml g(-1). EPS extraction by using a cation-exchange resin showed that proteins were more dominant than polysaccharides in all samples, and the protein content was 50% more in granular EPS than flocculent EPS. NaOH and heat extraction produced a higher protein and polysaccharide content from cell lysis. In situ EPS staining of granules showed that cells and polysaccharides were localized to the outer edge of granules, whereas the center was comprised mostly of proteins. These observations confirm the chemical extraction data and indicate that granule formation and stability are dependent on a noncellular, protein core. The comparison of EPS methods explains how significant cell lysis and contamination by dead biomass leads to different and opposing conclusions.
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Affiliation(s)
- B S McSwain
- Department of Civil Engineering and Geological Sciences, University of Notre Dame, Notre Dame, IN, USA.
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Pan S, Tay JH, He YX, Tay STL. The effect of hydraulic retention time on the stability of aerobically grown microbial granules. Lett Appl Microbiol 2004; 38:158-63. [PMID: 14746549 DOI: 10.1111/j.1472-765x.2003.01479.x] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
AIMS The aim of this study is to evaluate the effect of hydraulic retention time (HRT) on the development of aerobically grown microbial granules. METHODS AND RESULTS Five column-shaped sequential aerobic sludge blanket reactors (SASBRs) were seeded with aerobically grown microbial granules and operated in a cyclic mode at different HRTs. At the shortest HRT of 1 h, the strong hydraulic pressure triggered biomass washout and led to reactor failure. At the longest HRT of 24 h, which represented the weakest hydraulic selection in this study, aerobic granules were gradually substituted by bioflocs because of the lower frequency of volumetric exchange. Within the optimum range of HRTs from 2 to 12 h, however, aerobic granules became stabilized in the presence of adequate hydraulic selection in the reactors, with good mixed liquor volatile suspended solids (MLVSS) retention, high volumetric chemical oxygen demand (COD) removal, low sludge volume index (SVI) values, good effluent quality, low sludge production rate, stronger and more compact structures, high cell hydrophobicity and high ratios of extracellular polysaccharides (PS) to extracellular proteins (PN). CONCLUSIONS HRTs between 2 and 12 h provided the hydraulic selection pressures favourable for the formation and maintenance of stable aerobic granules with good settleability and activity. SIGNIFICANCE AND IMPACT OF THE STUDY This is the first systematic study on the effect of HRT on heterotrophic aerobic granules. The results of the investigation are useful in understanding how aerobic granules can be applied for wastewater treatment.
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Affiliation(s)
- S Pan
- Environmental Engineering Research Centre, School of Civil and Environmental Engineering, Nanyang Technological University, Singapore
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Skiadas IV, Gavala HN, Schmidt JE, Ahring BK. Anaerobic granular sludge and biofilm reactors. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2003; 82:35-67. [PMID: 12747565 DOI: 10.1007/3-540-45838-7_2] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
The long retention time of the active biomass in the high-rate anaerobic digesters is the key factor for the successful application of the high rate anaerobic wastewater treatment. The long solids retention time is achieved due to the specific reactor configuration and it is enhanced by the immobilization of the biomass, which forms static biofilms, particle-supported biofilms, or granules depending on the reactor's operational conditions. The advantages of the high-rate anaerobic digestion over the conventional aerobic wastewater treatment methods has created a clear trend for the change of the role of the anaerobic digestion in the wastewater treatment plants from a pre-treatment method to the main biological treatment method. The application of staged high-rate anaerobic digesters has shown the larger potential among the recent developments in this direction. The most common high-rate anaerobic treatment systems based on anaerobic granular sludge and biofilm are described in this chapter. Emphasis is given to a) the Up-flow Anaerobic Sludge Blanket (UASB) systems, b) the main characteristics of the anaerobic granular sludge, and c) the factors that control the granulation process. Finally, the most innovative staged anaerobic digesters are also presented.
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Affiliation(s)
- Ioannis V Skiadas
- The Environmental Microbiology and Biotechnology Group, Biocentrum-DTU, bldg 227, The Technical University of Denmark, 2800 Lyngby, Denmark.
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Abstract
It has been a decade since multicellularity was proposed as a general bacterial trait. Intercellular communication and multicellular coordination are now known to be widespread among prokaryotes and to affect multiple phenotypes. Many different classes of signaling molecules have been identified in both Gram-positive and Gram-negative species. Bacteria have sophisticated signal transduction networks for integrating intercellular signals with other information to make decisions about gene expression and cellular differentiation. Coordinated multicellular behavior can be observed in a variety of situations, including development of E. coli and B. subtilis colonies, swarming by Proteus and Serratia, and spatially organized interspecific metabolic cooperation in anaerobic bioreactor granules. Bacteria benefit from multicellular cooperation by using cellular division of labor, accessing resources that cannot effectively be utilized by single cells, collectively defending against antagonists, and optimizing population survival by differentiating into distinct cell types.
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Affiliation(s)
- J A Shapiro
- Department of Biochemistry and Molecular Biology, University of Chicago, Illinois 60637, USA.
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Chang YJ, Nishio N, Nagai S. Characteristics of granular methanogenic sludge grown on phenol synthetic medium and methanogenic fermentation of phenolic wastewater in a UASB reactor. ACTA ACUST UNITED AC 1995. [DOI: 10.1016/0922-338x(95)93993-t] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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21
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Extracellular polymers in granular sludge from different upflow anaerobic sludge blanket (UASB) reactors. Appl Microbiol Biotechnol 1994. [DOI: 10.1007/bf00902757] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Isolation and characterization of Veillonella sp. from methanogenic granular sludge. Appl Microbiol Biotechnol 1993. [DOI: 10.1007/bf00205069] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Chang YJ, Nishio N, Maruta H, Nagai S. Characteristics of granular methanogenic sludge grown on glucose in a UASB reactor. ACTA ACUST UNITED AC 1993. [DOI: 10.1016/0922-338x(93)90090-u] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Grotenhuis JTC, van Lier JB, Plugge CM, Stams AJM, Zehnder AJB. Effect of ethylene glycol-bis(β-aminoethyl ether)-N,N-tetraacetic acid (EGTA) on stability and activity of methanogenic granular sludge. Appl Microbiol Biotechnol 1991. [DOI: 10.1007/bf00164709] [Citation(s) in RCA: 31] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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