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Brown EJ, Nguyen AH, Bachtrog D. The Drosophila Y Chromosome Affects Heterochromatin Integrity Genome-Wide. Mol Biol Evol 2021; 37:2808-2824. [PMID: 32211857 PMCID: PMC7530609 DOI: 10.1093/molbev/msaa082] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
The Drosophila Y chromosome is gene poor and mainly consists of silenced, repetitive DNA. Nonetheless, the Y influences expression of hundreds of genes genome-wide, possibly by sequestering key components of the heterochromatin machinery away from other positions in the genome. To test the influence of the Y chromosome on the genome-wide chromatin landscape, we assayed the genomic distribution of histone modifications associated with gene activation (H3K4me3) or heterochromatin (H3K9me2 and H3K9me3) in fruit flies with varying sex chromosome complements (X0, XY, and XYY males; XX and XXY females). Consistent with the general deficiency of active chromatin modifications on the Y, we find that Y gene dose has little influence on the genomic distribution of H3K4me3. In contrast, both the presence and the number of Y chromosomes strongly influence genome-wide enrichment patterns of repressive chromatin modifications. Highly repetitive regions such as the pericentromeres, the dot, and the Y chromosome (if present) are enriched for heterochromatic modifications in wildtype males and females, and even more strongly in X0 flies. In contrast, the additional Y chromosome in XYY males and XXY females diminishes the heterochromatic signal in these normally silenced, repeat-rich regions, which is accompanied by an increase in expression of Y-linked repeats. We find hundreds of genes that are expressed differentially between individuals with aberrant sex chromosome karyotypes, many of which also show sex-biased expression in wildtype Drosophila. Thus, Y chromosomes influence heterochromatin integrity genome-wide, and differences in the chromatin landscape of males and females may also contribute to sex-biased gene expression and sexual dimorphisms.
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Affiliation(s)
- Emily J Brown
- Department of Integrative Biology, University of California Berkeley, Berkeley, CA
| | - Alison H Nguyen
- Department of Integrative Biology, University of California Berkeley, Berkeley, CA
| | - Doris Bachtrog
- Department of Integrative Biology, University of California Berkeley, Berkeley, CA
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2
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Exploring thermal flight responses as predictors of flight ability and geographic range size in Drosophila. Comp Biochem Physiol A Mol Integr Physiol 2019; 236:110532. [PMID: 31351148 DOI: 10.1016/j.cbpa.2019.110532] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2019] [Revised: 07/01/2019] [Accepted: 07/18/2019] [Indexed: 11/21/2022]
Abstract
Thermal flight performance curves (TFPCs) may be a useful proxy for determining dispersal on daily timescales in winged insect species. Few studies have assessed TFPCs across a range of species under standard conditions despite that they may be useful in predicting variation in performance, abundance or geographic range shifts with forecast climate variability. Indeed, the factors determining realized dispersal within and among flying insect species are generally poorly understood. To better understand how flight performance may be correlated with geographic range extent and potential latitudinal climate variability, we estimated the thermal performance curves of flight ability in 11 Drosophilidae species (in 4 °C increments across 16-28 °C) after standard laboratory rearing for two generations. We tested if key morphological, evolutionary or ecological factors (e.g. species identity, sex, body mass, wing loading, geographic range size) predicted traits of TFPCs (including optimum temperature, maximum performance, thermal breadth of performance) or flight ability (success/failure to fly). Although several parameters of TFPCs varied among species these were typically not statistically significant probably owing to the relatively small pool of species assessed and the limited trait variation detected. The best explanatory model of these flight responses across species included significant positive effects of test temperature and wing area. However, the rank of geographic distribution breadth and phylogeny failed to explain significant variation in most of the traits, except for thermal performance breadth, of thermal flight performance curves among these 11 species. Future studies that employ a wider range of Drosophilidae species, especially if coupled with fine-scale estimates of species' environmental niches, would be useful.
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The effect of captive breeding upon adult thermal preference in the Queensland fruit fly (Bactrocera tryoni). J Therm Biol 2018; 78:290-297. [PMID: 30509650 DOI: 10.1016/j.jtherbio.2018.10.005] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Revised: 09/25/2018] [Accepted: 10/12/2018] [Indexed: 11/22/2022]
Abstract
The Queensland fruit fly (Bactrocera tryoni) is a generalist pest that poses a significant threat to the Australian horticultural industry. This species has become broadly established across latitudes that encompass tropical to temperate climates, and hence populations occupy diverse thermal niches. Successful expansion across this range may have been brokered by evolutionarily labile features of breeding phenology, physiology and/or behaviour. We explored the potential role of behavioural flexibility by characterizing variation in adult thermal preference using a novel gradient apparatus. Flies oriented within this apparatus essentially at random in the absence of thermal variation, but sought and maintained precise positions when presented with an established gradient. Male and female flies from an 'old' colony (>300 generations) and a 'young' (F7) colony were compared. Whereas we found no difference between the sexes, flies from the young colony preferred higher temperatures (30.93 ± 7.30 °C) and had greater individual variation than their counterparts from the old colony (28.16 ± 5.63 °C). Given that B. tryoni are routinely maintained at 25 °C in the laboratory, a lower mean preference of the old colony is consistent with thermal adaptation. This is further supported by their reduced phenotypic variance, which follows as a logical consequence of stabilising selection given long-term environmental constancy. These results demonstrate that B. tryoni seek to thermoregulate via adult behaviour, and that individual temperature preference can be precisely measured using a gradient apparatus. The evidence for adaptive tuning of this behaviour has importance for both the design of captive rearing protocols as well as the prediction of invasive potential and species biogeography under future climatic variation.
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Krebs RA, Feder ME. NATURAL VARIATION IN THE EXPRESSION OF THE HEAT‐SHOCK PROTEIN HSP70 IN A POPULATION OF
DROSOPHILA MELANOGASTER
AND ITS CORRELATION WITH TOLERANCE OF ECOLOGICALLY RELEVANT THERMAL STRESS. Evolution 2017; 51:173-179. [DOI: 10.1111/j.1558-5646.1997.tb02398.x] [Citation(s) in RCA: 79] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/1996] [Accepted: 07/30/1996] [Indexed: 11/29/2022]
Affiliation(s)
- Robert A. Krebs
- Department of Organismal Biology and Anatomy The University of Chicago 1027 East 57th Street Chicago Illinois 60637
| | - Martin E. Feder
- Department of Organismal Biology and Anatomy The University of Chicago 1027 East 57th Street Chicago Illinois 60637
- Committee on Evolutionary Biology The University of Chicago 1027 East 57th Street Chicago Illinois 60637
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Ormerod KG, LePine OK, Abbineni PS, Bridgeman JM, Coorssen JR, Mercier AJ, Tattersall GJ. Drosophila development, physiology, behavior, and lifespan are influenced by altered dietary composition. Fly (Austin) 2017; 11:153-170. [PMID: 28277941 DOI: 10.1080/19336934.2017.1304331] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
Abstract
Diet profoundly influences the behavior of animals across many phyla. Despite this, most laboratories using model organisms, such as Drosophila, use multiple, different, commercial or custom-made media for rearing their animals. In addition to measuring growth, fecundity and longevity, we used several behavioral and physiological assays to determine if and how altering food media influence wild-type (Canton S) Drosophila melanogaster, at larval, pupal, and adult stages. Comparing 2 commonly used commercial food media we observed several key developmental and morphological differences. Third-instar larvae and pupae developmental timing, body weight and size, and even lifespan significantly differed between the 2 diets, and some of these differences persisted into adulthood. Diet was also found to produce significantly different thermal preference, locomotory capacity for geotaxis, feeding rates, and lower muscle response to hormonal stimulation. There were no differences, however, in adult thermal preferences, in the number or viability of eggs laid, or in olfactory learning and memory between the diets. We characterized the composition of the 2 diets and found particularly significant differences in cholesterol and (phospho)lipids between them. Notably, diacylglycerol (DAG) concentrations vary substantially between the 2 diets, and may contribute to key phenotypic differences, including lifespan. Overall, the data confirm that 2 different diets can profoundly influence the behavior, physiology, morphology and development of wild-type Drosophila, with greater behavioral and physiologic differences occurring during the larval stages.
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Affiliation(s)
- Kiel G Ormerod
- a Department of Biological Sciences , Brock University , St. Catharines , ON , Canada
| | - Olivia K LePine
- a Department of Biological Sciences , Brock University , St. Catharines , ON , Canada
| | - Prabhodh S Abbineni
- b Department of Molecular Physiology, and the WSU Molecular Medicine Research Group, School of Medicine , Western Sydney University , Penrith , New South Wales , Australia
| | - Justin M Bridgeman
- a Department of Biological Sciences , Brock University , St. Catharines , ON , Canada
| | - Jens R Coorssen
- a Department of Biological Sciences , Brock University , St. Catharines , ON , Canada.,b Department of Molecular Physiology, and the WSU Molecular Medicine Research Group, School of Medicine , Western Sydney University , Penrith , New South Wales , Australia.,c Faculty of Graduate Studies, Department of Health Sciences , Brock University , St. Catharines , ON , Canada
| | - A Joffre Mercier
- a Department of Biological Sciences , Brock University , St. Catharines , ON , Canada
| | - Glenn J Tattersall
- a Department of Biological Sciences , Brock University , St. Catharines , ON , Canada
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6
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Probing the impact of temperature on molecular events in a developmental system. Sci Rep 2015; 5:13124. [PMID: 26286011 PMCID: PMC4541335 DOI: 10.1038/srep13124] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2015] [Accepted: 07/16/2015] [Indexed: 01/19/2023] Open
Abstract
A well-appreciated general feature of development is the ability to achieve a normal outcome despite the inevitable variability at molecular, genetic, or environmental levels. But it is not well understood how changes in a global factor such as temperature bring about specific challenges to a developmental system in molecular terms. Here we address this question using early Drosophila embryos where the maternal gradient Bicoid (Bcd) instructs anterior-patterning (AP) patterning. We show that temperature can impact the amplitude of the Bcd gradient in the embryo. To evaluate how molecular decisions are made at different temperatures, we quantify Bcd concentrations and the expression of its target gene hunchback (hb) in individual embryos. Our results suggest a relatively robust Bcd concentration threshold in inducing hb transcription within a temperature range. Our results also reveal a complex nature of the effects of temperature on the progressions of developmental and molecular events of the embryo. Our study thus advances the concept of developmental robustness by quantitatively elaborating specific features and challenges—imposed by changes in temperature—that an embryo must resolve.
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Kuntz SG, Eisen MB. Drosophila embryogenesis scales uniformly across temperature in developmentally diverse species. PLoS Genet 2014; 10:e1004293. [PMID: 24762628 PMCID: PMC3998915 DOI: 10.1371/journal.pgen.1004293] [Citation(s) in RCA: 83] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2013] [Accepted: 02/21/2014] [Indexed: 02/02/2023] Open
Abstract
Temperature affects both the timing and outcome of animal development, but the detailed effects of temperature on the progress of early development have been poorly characterized. To determine the impact of temperature on the order and timing of events during Drosophila melanogaster embryogenesis, we used time-lapse imaging to track the progress of embryos from shortly after egg laying through hatching at seven precisely maintained temperatures between 17.5°C and 32.5°C. We employed a combination of automated and manual annotation to determine when 36 milestones occurred in each embryo. D. melanogaster embryogenesis takes 33 hours at 17.5°C, and accelerates with increasing temperature to a low of 16 hours at 27.5°C, above which embryogenesis slows slightly. Remarkably, while the total time of embryogenesis varies over two fold, the relative timing of events from cellularization through hatching is constant across temperatures. To further explore the relationship between temperature and embryogenesis, we expanded our analysis to cover ten additional Drosophila species of varying climatic origins. Six of these species, like D. melanogaster, are of tropical origin, and embryogenesis time at different temperatures was similar for them all. D. mojavensis, a sub-tropical fly, develops slower than the tropical species at lower temperatures, while D. virilis, a temperate fly, exhibits slower development at all temperatures. The alpine sister species D. persimilis and D. pseudoobscura develop as rapidly as tropical flies at cooler temperatures, but exhibit diminished acceleration above 22.5°C and have drastically slowed development by 30°C. Despite ranging from 13 hours for D. erecta at 30°C to 46 hours for D. virilis at 17.5°C, the relative timing of events from cellularization through hatching is constant across all species and temperatures examined here, suggesting the existence of a previously unrecognized timer controlling the progress of embryogenesis that has been tuned by natural selection as each species diverges. Temperature profoundly impacts the rate of development of “cold-blooded” animals, which proceeds far faster when it is warm. There is, however, no universal relationship. Closely related species can develop at markedly different speeds at the same temperature. This creates a major challenge when comparing development among species, as it is unclear whether they should be compared at the same temperature or under different conditions to maintain the same developmental rate. Facing this challenge while working with flies (Drosophila species), we found there was little data to inform this decision. So, using time-lapse imaging, precise temperature-control, and computational and manual video-analysis, we tracked the complex process of embryogenesis in 11 species at seven different temperatures. There was over a three-fold difference in developmental rate between the fastest species at its fastest temperature and the slowest species at its slowest temperature. However, our finding that the timing of events within development all scaled uniformly across species and temperatures astonished us. This is good news for developmental biologists, since we can induce species to develop nearly identically by growing them at different temperatures. But it also means flies must possess some unknown clock-like molecular mechanism driving embryogenesis forward.
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Affiliation(s)
- Steven G. Kuntz
- QB3 Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, California, United States of America
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California, United States of America
- * E-mail:
| | - Michael B. Eisen
- QB3 Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, California, United States of America
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California, United States of America
- Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, California, United States of America
- Department of Integrative Biology, University of California, Berkeley, Berkeley, California, United States of America
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8
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Abstract
Environmental temperature strongly affects physiology of ectotherms. Small ectotherms, like Drosophila, cannot endogenously regulate body temperature so must rely on behavior to maintain body temperature within a physiologically permissive range. Here we review what is known about Drosophila thermal preference. Work on thermal behavior in this group is particularly exciting because it provides the opportunity to connect genes to neuromolecular mechanisms to behavior to fitness in the wild.
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Affiliation(s)
- Michael E Dillon
- Department of Biology, Box 351800, University of Washington, Seattle, WA 98195-1800 USA
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9
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Naya DE, Bozinovic F, Karasov WH. Latitudinal Trends in Digestive Flexibility: Testing the Climatic Variability Hypothesis with Data on the Intestinal Length of Rodents. Am Nat 2008; 172:E122-34. [PMID: 18717635 DOI: 10.1086/590957] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Daniel E Naya
- Center for Advanced Studies in Ecology and Biodiversity and Departamento de Ecología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, CP 6513677, Chile.
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10
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Ragland GJ, Kingsolver JG. EVOLUTION OF THERMOTOLERANCE IN SEASONAL ENVIRONMENTS: THE EFFECTS OF ANNUAL TEMPERATURE VARIATION AND LIFE-HISTORY TIMING IN WYEOMYIA SMITHII. Evolution 2008; 62:1345-57. [DOI: 10.1111/j.1558-5646.2008.00367.x] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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11
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Gibert P, Moreteau B, Pétavy G, Karan D, David JR. CHILL-COMA TOLERANCE, A MAJOR CLIMATIC ADAPTATION AMONG DROSOPHILA SPECIES. Evolution 2007. [DOI: 10.1111/j.0014-3820.2001.tb00623.x] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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12
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Krebs RA, La Torre V, Loeschcke V, Cavicchi S. Heat-shock resistance in Drosophila populations: analysis of variation in reciprocal cross progeny. Hereditas 2004; 124:47-55. [PMID: 8690613 DOI: 10.1111/j.1601-5223.1996.00047.x] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023] Open
Abstract
Genetic variation for resistance to high temperature stress was studied in populations of D. melanogaster and D. buzzatii from different geographic regions. Drosophila melanogaster individuals were presented with either a direct short exposure to a high temperature or exposure to high temperature after receiving a pretreatment, which increased resistance. Heat-stress resistance varied among populations, with one much more resistant than all others under both treatments. Another possessed low stress resistance when exposed without the heat pretreatment; but with pretreatment, resistance increased relative to the other populations. Evidence from reciprocal crosses suggests that the X chromosome of the more resistant population carries alleles that greatly increase resistance, and that one or more factors on the autosomes also affect resistance. Non-additive interaction effects among the three less resistant population, were suggestive that all differ for various elements that contribute to stress resistance, and that some clearly change inducible resistance more than basal levels. In D. buzzatii, the two least resistant populations were genetically very similar. Crosses to the more resistant population gave results suggesting that the low resistance to heat is dominant. A small X-chromosome effect that increased resistance, and a dominant enhancer of male resistance also may have contributed to variation in resistance.
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Affiliation(s)
- R A Krebs
- Department of Ecology and Genetics, University of Aarhus, Denmark
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13
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Hoffmann AA, Sørensen JG, Loeschcke V. Adaptation of Drosophila to temperature extremes: bringing together quantitative and molecular approaches. J Therm Biol 2003. [DOI: 10.1016/s0306-4565(02)00057-8] [Citation(s) in RCA: 538] [Impact Index Per Article: 25.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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14
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Gibert P, Moreteau B, Pétavy G, Karan D, David JR. Chill-coma tolerance, a major climatic adaptation among Drosophila species. Evolution 2001; 55:1063-8. [PMID: 11430643 DOI: 10.1554/0014-3820(2001)055[1063:cctamc]2.0.co;2] [Citation(s) in RCA: 161] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Most drosophilid species can be classified either as temperate or tropical. Adults of species were submitted to a cold treatment (0 degrees C) and then brought back to ambient temperature. They generally exhibited a chill coma and the time needed to recover was measured. We found in a set of 26 temperate species that recovery was rapid (average 1.8 min, range 0.15-4.9). In contrast, a long recovery time (average 56 min, range 24-120) was observed for 48 tropical species. A few species, like Drosophila melanogaster, are cosmopolitan and can proliferate under temperate and tropical climates. In 9 of 10 such species, slight genetic differences were found: a shorter recovery in temperate than in tropical populations. Comparing physiological data to phylogeny suggests that chill-coma tolerance has been a recurrent adaptation that is selected for in cold climates but tends to disappear under a permanently warm environment. This major climatic adaptation, evidenced in drosophilids, seems to occur in other insect groups also.
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Affiliation(s)
- P Gibert
- Laboratoire Populations, Génétique et Evolution, CNRS, Gif sur Yvette, France.
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15
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Temperature and humidity affecting development, survival and weight loss of the pupal stage of Drosophila melanogaster, and the influence of alternating temperature on the larvae. J Therm Biol 1996. [DOI: 10.1016/s0306-4565(96)00025-3] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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16
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Yamamoto AH. Temperature preference of Drosophila immigrans and D. virilis: intra- and inter-population genetic variation. IDENGAKU ZASSHI 1994; 69:67-76. [PMID: 8037926 DOI: 10.1266/jjg.69.67] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Large amounts of genetic variation for preferred temperature was uncovered in natural populations of Drosophila immigrans and D. virilis. On average, the former preferred 17.8 degrees C and the latter did 21.0 degrees C. Most variation in D. immigrans was found among isofemale lines within geographic populations, with no significant difference among geographic populations. Both intra- and inter-populational differentiation were significant in D. virilis. No geographic cline in preferred temperature was observed in either species. The distribution of flies on the temperature gradient indicates that the temperature selection of D. immigrans is stronger than that of in D. virilis.
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Affiliation(s)
- A H Yamamoto
- Department of Biology, Tokyo Metropolitan University, Japan
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17
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Yamamoto AH. Diallel analysis of temperature preference in Drosophila immigrans. IDENGAKU ZASSHI 1994; 69:77-86. [PMID: 8037927 DOI: 10.1266/jjg.69.77] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The genetic structure of temperature preference of D. immigrans was analyzed by a 4 x 4 diallel cross. Preference for low temperature was dominant to that for high temperature. Partition of the variance showed that most of the variance was additive; the variance caused by dominance was small but significant, and non-additive, non-dominance variance was not significant. Heritability of the temperature preference was 0.81. There may be a few genes involved in variation for temperature preference.
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Affiliation(s)
- A H Yamamoto
- Department of Biology, Tokyo Metropolitan University, Japan
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18
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YAMAMOTO AH. Temperature preference of Drosophila immigrans and D. virilis: Intra- and inter-population genetic variation. Genes Genet Syst 1994. [DOI: 10.1266/ggs.69.67] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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19
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YAMAMOTO AH. Diallel analysis of temperature preference in Drosophila immigrans. Genes Genet Syst 1994. [DOI: 10.1266/ggs.69.77] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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