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Yamakou ME, Zhu J, Martens EA. Inverse stochastic resonance in adaptive small-world neural networks. CHAOS (WOODBURY, N.Y.) 2024; 34:113119. [PMID: 39504100 DOI: 10.1063/5.0225760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Accepted: 10/16/2024] [Indexed: 11/08/2024]
Abstract
Inverse stochastic resonance (ISR) is a counterintuitive phenomenon where noise reduces the oscillation frequency of an oscillator to a minimum occurring at an intermediate noise intensity, and sometimes even to the complete absence of oscillations. In neuroscience, ISR was first experimentally verified with cerebellar Purkinje neurons [Buchin et al., PLOS Comput. Biol. 12, e1005000 (2016)]. These experiments showed that ISR enables a locally optimal information transfer between the input and output spike train of neurons. Subsequent studies have further demonstrated the efficiency of information processing and transfer in neural networks with small-world network topology. We have conducted a numerical investigation into the impact of adaptivity on ISR in a small-world network of noisy FitzHugh-Nagumo (FHN) neurons, operating in a bi-metastable regime consisting of a metastable fixed point and a metastable limit cycle. Our results show that the degree of ISR is highly dependent on the value of the FHN model's timescale separation parameter ε. The network structure undergoes dynamic adaptation via mechanisms of either spike-time-dependent plasticity (STDP) with potentiation-/depression-domination parameter P or homeostatic structural plasticity (HSP) with rewiring frequency F. We demonstrate that both STDP and HSP amplify the effect of ISR when ε lies within the bi-stability region of FHN neurons. Specifically, at larger values of ε within the bi-stability regime, higher rewiring frequencies F are observed to enhance ISR at intermediate (weak) synaptic noise intensities, while values of P consistent with depression-domination (potentiation-domination) consistently enhance (deteriorate) ISR. Moreover, although STDP and HSP control parameters may jointly enhance ISR, P has a greater impact on improving ISR compared to F. Our findings inform future ISR enhancement strategies in noisy artificial neural circuits, aiming to optimize local information transfer between input and output spike trains in neuromorphic systems and prompt venues for experiments in neural networks.
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Affiliation(s)
- Marius E Yamakou
- Department of Data Science, Friedrich-Alexander-Universität Erlangen-Nürnberg, Cauerstr. 11, 91058 Erlangen, Germany
| | - Jinjie Zhu
- State Key Laboratory of Mechanics and Control for Aerospace Structures, College of Aerospace Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing 210016, China
| | - Erik A Martens
- Centre for Mathematical Sciences, Lund University, Sölvegatan 18B, 221 00 Lund, Sweden
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2
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Huh JH, Higashi T, Sato Y. Manipulating conductivity and noise for transitioning between stochastic and inverse stochastic resonances in liquid-crystal electroconvection. Sci Rep 2024; 14:21821. [PMID: 39294187 PMCID: PMC11411126 DOI: 10.1038/s41598-024-71897-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2024] [Accepted: 09/02/2024] [Indexed: 09/20/2024] Open
Abstract
Noise can play a constructive role in nature and various engineering systems. Over the past four decades, noise-induced stochastic resonances (SRs) have been extensively documented, showing enhancement in system performance. Additionally, inverse SR has been observed in various systems. Typically, these resonances were studied independently. A transition between these resonances was recently observed in an alternating current-driven liquid-crystal electroconvection (EC) system using combined amplitude and phase noises. This study uses internal (material) and external (noise) parameters to demonstrate the control of this transition. Specifically, the nonmonotonic threshold voltage behavior of the EC system, indicative of the resonances, was numerically examined using additional parameters. Experimental tests were conducted to confirm the effects of these parameters. The findings reveal that the transition between these resonances can be systematically controlled to meet specific needs, whether desirable or undesirable system performances. Notably, this study illustrates how to modify the behavior of both resonances in colored noise by adjusting its cutoff frequency and steepness and phase noise, which is often overlooked. Moreover, this study provides valuable insights for various noise-related applications.
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Affiliation(s)
- Jong-Hoon Huh
- Department of Physics and Information Technology, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology, Fukuoka, 820-8502, Japan.
| | - Takumu Higashi
- Department of Physics and Information Technology, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology, Fukuoka, 820-8502, Japan
| | - Yuki Sato
- Department of Physics and Information Technology, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology, Fukuoka, 820-8502, Japan
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3
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Huh JH, Shiomi M, Miyagawa N. Control of stochastic and inverse stochastic resonances in a liquid-crystal electroconvection system using amplitude and phase noises. Sci Rep 2023; 13:16883. [PMID: 37803168 PMCID: PMC10558573 DOI: 10.1038/s41598-023-44043-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 10/03/2023] [Indexed: 10/08/2023] Open
Abstract
Stochastic and inverse stochastic resonances are counterintuitive phenomena, where noise plays a pivotal role in the dynamics of various biological and engineering systems. Even though these resonances have been identified in various systems, a transition between them has never been observed before. The present study demonstrates the presence of both resonances in a liquid crystal electroconvection system using combined amplitude and phase noises, which correspond to colored noises with appropriate cutoff frequencies (i.e., finite correlation times). We established the emergence of both resonances and their transition through systematic control of the electroconvection threshold voltage using these two noise sources. Our numerical simulations were experimentally confirmed and revealed how the output performance of the system could be controlled by combining the intensity and cutoff frequency of the two noises. Furthermore, we suggested the crucial contribution of a usually overlooked additional phase noise to the advancements in various noise-related fields.
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Affiliation(s)
- Jong-Hoon Huh
- Department of Physics and Information Technology, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology, Fukuoka, 820-8502, Japan.
| | - Masato Shiomi
- Department of Physics and Information Technology, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology, Fukuoka, 820-8502, Japan
| | - Naoto Miyagawa
- Department of Physics and Information Technology, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology, Fukuoka, 820-8502, Japan
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4
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Martínez N, Deza RR, Montani F. Characterizing the information transmission of inverse stochastic resonance and noise-induced activity amplification in neuronal systems. Phys Rev E 2023; 107:054402. [PMID: 37329070 DOI: 10.1103/physreve.107.054402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Accepted: 04/13/2023] [Indexed: 06/18/2023]
Abstract
Purkinje cells exhibit a reduction of the mean firing rate at intermediate-noise intensities, which is somewhat reminiscent of the response enhancement known as "stochastic resonance" (SR). Although the comparison with the stochastic resonance ends here, the current phenomenon has been given the name "inverse stochastic resonance" (ISR). Recent research has demonstrated that the ISR effect, like its close relative "nonstandard SR" [or, more correctly, noise-induced activity amplification (NIAA)], has been shown to stem from the weak-noise quenching of the initial distribution, in bistable regimes where the metastable state has a larger attraction basin than the global minimum. To understand the underlying mechanism of the ISR and NIAA phenomena, we study the probability distribution function of a one-dimensional system subjected to a bistable potential that has the property of symmetry, i.e., if we change the sign of one of its parameters, we can obtain both phenomena with the same properties in the depth of the wells and the width of their basins of attraction subjected to Gaussian white noise with variable intensity. Previous work has shown that one can theoretically determine the probability distribution function using the convex sum between the behavior at small and high noise intensities. To determine the probability distribution function more precisely, we resort to the "weighted ensemble Brownian dynamics simulation" model, which provides an accurate estimate of the probability distribution function for both low and high noise intensities and, most importantly, for the transition of both behaviors. In this way, on the one hand, we show that both phenomena emerge from a metastable system where, in the case of ISR, the global minimum of the system is in a state of lower activity, while in the case of NIAA, the global minimum is in a state of increased activity, the importance of which does not depend on the width of the basins of attraction. On the other hand, we see that quantifiers such as Fisher information, statistical complexity, and especially Shannon entropy fail to distinguish them, but they show the existence of the mentioned phenomena. Thus, noise management may well be a mechanism by which Purkinje cells find an efficient way to transmit information in the cerebral cortex.
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Affiliation(s)
- Nataniel Martínez
- IFIMAR (CONICET), Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, B7602AYL Mar del Plata, Argentina
| | - Roberto R Deza
- IFIMAR (CONICET), Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Mar del Plata, B7602AYL Mar del Plata, Argentina
| | - Fernando Montani
- IFLP (CONICET), Facultad de Ciencias Exactas, Universidad Nacional de La Plata, B1900 La Plata, Argentina
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Yamakou ME, Kuehn C. Combined effects of spike-timing-dependent plasticity and homeostatic structural plasticity on coherence resonance. Phys Rev E 2023; 107:044302. [PMID: 37198865 DOI: 10.1103/physreve.107.044302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 03/23/2023] [Indexed: 05/19/2023]
Abstract
Efficient processing and transfer of information in neurons have been linked to noise-induced resonance phenomena such as coherence resonance (CR), and adaptive rules in neural networks have been mostly linked to two prevalent mechanisms: spike-timing-dependent plasticity (STDP) and homeostatic structural plasticity (HSP). Thus this paper investigates CR in small-world and random adaptive networks of Hodgkin-Huxley neurons driven by STDP and HSP. Our numerical study indicates that the degree of CR strongly depends, and in different ways, on the adjusting rate parameter P, which controls STDP, on the characteristic rewiring frequency parameter F, which controls HSP, and on the parameters of the network topology. In particular, we found two robust behaviors. (i) Decreasing P (which enhances the weakening effect of STDP on synaptic weights) and decreasing F (which slows down the swapping rate of synapses between neurons) always leads to higher degrees of CR in small-world and random networks, provided that the synaptic time delay parameter τ_{c} has some appropriate values. (ii) Increasing the synaptic time delay τ_{c} induces multiple CR (MCR)-the occurrence of multiple peaks in the degree of coherence as τ_{c} changes-in small-world and random networks, with MCR becoming more pronounced at smaller values of P and F. Our results imply that STDP and HSP can jointly play an essential role in enhancing the time precision of firing necessary for optimal information processing and transfer in neural systems and could thus have applications in designing networks of noisy artificial neural circuits engineered to use CR to optimize information processing and transfer.
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Affiliation(s)
- Marius E Yamakou
- Department of Data Science, Friedrich-Alexander-Universität Erlangen-Nürnberg, Cauerstr. 11, 91058 Erlangen, Germany
- Max-Planck-Institut für Mathematik in den Naturwissenschaften, Inselstr. 22, 04103 Leipzig, Germany
| | - Christian Kuehn
- Faculty of Mathematics, Technical University of Munich, Boltzmannstrasse 3, 85748 Garching bei München, Germany
- Complexity Science Hub Vienna, Josefstädter Strasse 39, 1080 Vienna, Austria
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Suzuki Y, Asakawa N. Stochastic Resonance in Organic Electronic Devices. Polymers (Basel) 2022; 14:polym14040747. [PMID: 35215663 PMCID: PMC8878602 DOI: 10.3390/polym14040747] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Revised: 02/07/2022] [Accepted: 02/09/2022] [Indexed: 01/27/2023] Open
Abstract
Stochastic Resonance (SR) is a phenomenon in which noise improves the performance of a system. With the addition of noise, a weak input signal to a nonlinear system, which may exceed its threshold, is transformed into an output signal. In the other words, noise-driven signal transfer is achieved. SR has been observed in nonlinear response systems, such as biological and artificial systems, and this review will focus mainly on examples of previous studies of mathematical models and experimental realization of SR using poly(hexylthiophene)-based organic field-effect transistors (OFETs). This phenomenon may contribute to signal processing with low energy consumption. However, the generation of SR requires a noise source. Therefore, the focus is on OFETs using materials such as organic materials with unstable electrical properties and critical elements due to unidirectional signal transmission, such as neural synapses. It has been reported that SR can be observed in OFETs by application of external noise. However, SR does not occur under conditions where the input signal exceeds the OFET threshold without external noise. Here, we present an example of a study that analyzes the behavior of SR in OFET systems and explain how SR can be made observable. At the same time, the role of internal noise in OFETs will be explained.
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Bönsel F, Krauss P, Metzner C, Yamakou ME. Control of noise-induced coherent oscillations in three-neuron motifs. Cogn Neurodyn 2021; 16:941-960. [PMID: 35847543 PMCID: PMC9279551 DOI: 10.1007/s11571-021-09770-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2021] [Revised: 10/27/2021] [Accepted: 11/27/2021] [Indexed: 12/04/2022] Open
Abstract
The phenomenon of self-induced stochastic resonance (SISR) requires a nontrivial scaling limit between the deterministic and the stochastic timescales of an excitable system, leading to the emergence of coherent oscillations which are absent without noise. In this paper, we numerically investigate SISR and its control in single neurons and three-neuron motifs made up of the Morris–Lecar model. In single neurons, we compare the effects of electrical and chemical autapses on the degree of coherence of the oscillations due to SISR. In the motifs, we compare the effects of altering the synaptic time-delayed couplings and the topologies on the degree of SISR. Finally, we provide two enhancement strategies for a particularly poor degree of SISR in motifs with chemical synapses: (1) we show that a poor SISR can be significantly enhanced by attaching an electrical or an excitatory chemical autapse on one of the neurons, and (2) we show that by multiplexing the motif with a poor SISR to another motif (with a high SISR in isolation), the degree of SISR in the former motif can be significantly enhanced. We show that the efficiency of these enhancement strategies depends on the topology of the motifs and the nature of synaptic time-delayed couplings mediating the multiplexing connections.
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Affiliation(s)
- Florian Bönsel
- Chair for Dynamics, Control and Numerics, Department of Data Science, Friedrich-Alexander-Universität Erlangen-Nürnberg, Cauerstr. 11, 91058 Erlangen, Germany
- Biophysics Group, Friedrich-Alexander-Universität Erlangen-Nürnberg, Henkestr. 91, 91052 Erlangen, Germany
| | - Patrick Krauss
- Neuroscience Lab, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Waldstr. 1, 91054 Erlangen, Germany
| | - Claus Metzner
- Biophysics Group, Friedrich-Alexander-Universität Erlangen-Nürnberg, Henkestr. 91, 91052 Erlangen, Germany
| | - Marius E. Yamakou
- Chair for Dynamics, Control and Numerics, Department of Data Science, Friedrich-Alexander-Universität Erlangen-Nürnberg, Cauerstr. 11, 91058 Erlangen, Germany
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8
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Zhu J. Unified mechanism of inverse stochastic resonance for monostability and bistability in Hindmarsh-Rose neuron. CHAOS (WOODBURY, N.Y.) 2021; 31:033119. [PMID: 33810765 DOI: 10.1063/5.0041410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Accepted: 02/16/2021] [Indexed: 06/12/2023]
Abstract
Noise is ubiquitous and has been verified to play constructive roles in various systems, among which the inverse stochastic resonance (ISR) has aroused much attention in contrast to positive effects such as stochastic resonance. The ISR has been observed in both bistable and monostable systems for which the mechanisms are revealed as noise-induced biased switching and noise-enhanced stability, respectively. In this paper, we investigate the ISR phenomenon in the monostable and bistable Hindmarsh-Rose neurons within a unified framework of large deviation theory. The critical noise strengths for both cases can be obtained by matching the timescales between noise-induced boundary crossing and the limit cycle. Furthermore, different stages of ISR are revealed by the bursting frequency distribution, where the gradual increase of the peak bursting frequency can also be explained within the same framework. The perspective and results in this paper may shed some light on the understanding of the noise-induced complex phenomena in stochastic dynamical systems.
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Affiliation(s)
- Jinjie Zhu
- School of Mechanical Engineering, Nanjing University of Science and Technology, Nanjing 210094, China
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Jiang Z, Wang D, Shang H, Chen Y. Effect of potassium channel noise on nerve discharge based on the Chay model. Technol Health Care 2020; 28:371-381. [PMID: 32364170 PMCID: PMC7369062 DOI: 10.3233/thc-209038] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
Abstract
BACKGROUND: The nervous system senses and transmits information through the firing behavior of neurons, and this process is affected by various noises. However, in the previous study of the influence of noise on nerve discharge, the channel of some noise effects is not clear, and the difference from other noises was not examined. OBJECTIVE: To construct ion channel noise which is more biologically significant, and to clarify the basic characteristics of the random firing rhythm of neurons generated by different types of noise acting on ion channels. Method: Based on the dynamics of the ion channel, we constructed ion channel noise. We simulated the nerve discharge based on the Chay model of potassium ion channel noise, and used the nonlinear time series analysis method to measure the certainty and randomness of nerve discharge. RESULTS: In the Chay model with potassium ion noise, the chaotic rhythm defined by the original model could be effectively unified with the random rhythm simulated by the previous random Chay model into a periodic bifurcation process. CONCLUSION: This method clarified the influence of ion channel noise on nerve discharge, better understood the randomness of nerve discharge and provided a more reasonable explanation for the mechanism of nerve discharge.
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Affiliation(s)
- Zhongting Jiang
- School of Information Science and Engineering, University of Jinan, Jinan, Shandong, China
| | - Dong Wang
- School of Information Science and Engineering, University of Jinan, Jinan, Shandong, China.,Shandong Provincial Key Laboratory of Network Based Intelligent Computing, Jinan, Shandong, China.,Key Laboratory of Medicinal Plant and Animal Resources of Qinghai-Tibet Plateau in Qinghai Province, Qinghai Normal University, Xining, Qinghai, China
| | - Huijie Shang
- School of Information Science and Engineering, University of Jinan, Jinan, Shandong, China
| | - Yuehui Chen
- School of Information Science and Engineering, University of Jinan, Jinan, Shandong, China
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Qu G, Fan B, Fu X, Yu Y. The Impact of Frequency Scale on the Response Sensitivity and Reliability of Cortical Neurons to 1/f β Input Signals. Front Cell Neurosci 2019; 13:311. [PMID: 31354432 PMCID: PMC6637762 DOI: 10.3389/fncel.2019.00311] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2019] [Accepted: 06/25/2019] [Indexed: 12/16/2022] Open
Abstract
What type of principle features intrinsic inside of the fluctuated input signals could drive neurons with the maximal excitations is one of the crucial neural coding issues. In this article, we examined both experimentally and theoretically the cortical neuronal responsivity (including firing rate and spike timing reliability) to input signals with different intrinsic correlational statistics (e.g., white-type noise, showed 1/f0 power spectrum, pink noise 1/f, and brown noises 1/f2) and different frequency ranges. Our results revealed that the response sensitivity and reliability of cortical neurons is much higher in response to 1/f noise stimuli with long-term correlations than 1/f0 with short-term correlations for a broad frequency range, and also higher than 1/f2 for all frequency ranges. In addition, we found that neuronal sensitivity diverges to opposite directions for 1/f noise comparing with 1/f0 white noise as a function of cutoff frequency of input signal. As the cutoff frequency is progressively increased from 50 to 1,000 Hz, the neuronal responsiveness increased gradually for 1/f noise, while decreased exponentially for white noise. Computational simulations of a general cortical model revealed that, neuronal sensitivity and reliability to input signal statistics was majorly dominated by fast sodium inactivation, potassium activation, and membrane time constants.
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Affiliation(s)
| | | | | | - Yuguo Yu
- State Key Laboratory of Medical Neurobiology, School of Life Science, Human Phenome Institute, Institute of Brain Science, Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai, China
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Yamakou ME, Jost J. Weak-noise-induced transitions with inhibition and modulation of neural oscillations. BIOLOGICAL CYBERNETICS 2018; 112:445-463. [PMID: 29995240 PMCID: PMC6153713 DOI: 10.1007/s00422-018-0770-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2017] [Accepted: 06/27/2018] [Indexed: 05/29/2023]
Abstract
We analyze the effect of weak-noise-induced transitions on the dynamics of the FitzHugh-Nagumo neuron model in a bistable state consisting of a stable fixed point and a stable unforced limit cycle. Bifurcation and slow-fast analysis give conditions on the parameter space for the establishment of this bi-stability. In the parametric zone of bi-stability, weak-noise amplitudes may strongly inhibit the neuron's spiking activity. Surprisingly, increasing the noise strength leads to a minimum in the spiking activity, after which the activity starts to increase monotonically with an increase in noise strength. We investigate this inhibition and modulation of neural oscillations by weak-noise amplitudes by looking at the variation of the mean number of spikes per unit time with the noise intensity. We show that this phenomenon always occurs when the initial conditions lie in the basin of attraction of the stable limit cycle. For initial conditions in the basin of attraction of the stable fixed point, the phenomenon, however, disappears, unless the timescale separation parameter of the model is bounded within some interval. We provide a theoretical explanation of this phenomenon in terms of the stochastic sensitivity functions of the attractors and their minimum Mahalanobis distances from the separatrix isolating the basins of attraction.
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Affiliation(s)
- Marius E. Yamakou
- Max-Planck-Institut für Mathematik in den Naturwissenschaften, Inselstr. 22, 04103 Leipzig, Germany
- Fakultät für Mathematik und Informatik, Universität Leipzig, Augustusplatz 10, 04109 Leipzig, Germany
| | - Jürgen Jost
- Max-Planck-Institut für Mathematik in den Naturwissenschaften, Inselstr. 22, 04103 Leipzig, Germany
- Fakultät für Mathematik und Informatik, Universität Leipzig, Augustusplatz 10, 04109 Leipzig, Germany
- Santa Fe Institute for the Sciences of Complexity, Santa Fe, NM 87501 USA
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12
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13
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Dashevskiy T, Cymbalyuk G. Propensity for Bistability of Bursting and Silence in the Leech Heart Interneuron. Front Comput Neurosci 2018; 12:5. [PMID: 29467641 PMCID: PMC5808133 DOI: 10.3389/fncom.2018.00005] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2017] [Accepted: 01/12/2018] [Indexed: 12/15/2022] Open
Abstract
The coexistence of neuronal activity regimes has been reported under normal and pathological conditions. Such multistability could enhance the flexibility of the nervous system and has many implications for motor control, memory, and decision making. Multistability is commonly promoted by neuromodulation targeting specific membrane ionic currents. Here, we investigated how modulation of different ionic currents could affect the neuronal propensity for bistability. We considered a leech heart interneuron model. It exhibits bistability of bursting and silence in a narrow range of the leak current parameters, conductance (gleak) and reversal potential (Eleak). We assessed the propensity for bistability of the model by using bifurcation diagrams. On the diagram (gleak, Eleak), we mapped bursting and silent regimes. For the canonical value of Eleak we determined the range of gleak which supported the bistability. We use this range as an index of propensity for bistability. We investigated how this index was affected by alterations of ionic currents. We systematically changed their conductances, one at a time, and built corresponding bifurcation diagrams in parameter planes of the maximal conductance of a given current and the leak conductance. We found that conductance of only one current substantially affected the index of propensity; the increase of the maximal conductance of the hyperpolarization-activated cationic current increased the propensity index. The second conductance with the strongest effect was the conductance of the low-threshold fast Ca2+ current; its reduction increased the propensity index although the effect was about two times smaller in magnitude. Analyzing the model with both changes applied simultaneously, we found that the diagram (gleak, Eleak) showed a progressively expanded area of bistability of bursting and silence.
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Affiliation(s)
- Tatiana Dashevskiy
- Neuroscience Institute, Georgia State University, Atlanta, GA, United States.,Center for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA, United States
| | - Gennady Cymbalyuk
- Neuroscience Institute, Georgia State University, Atlanta, GA, United States
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14
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Abstract
Simple mathematical models can exhibit rich and complex behaviors. Prototypical examples of these drawn from biology and other disciplines have provided insights that extend well beyond the situations that inspired them. Here, we explore a set of simple, yet realistic, models for savanna-forest vegetation dynamics based on minimal ecological assumptions. These models are aimed at understanding how vegetation interacts with both climate (a primary global determinant of vegetation structure) and feedbacks with chronic disturbances from fire. The model includes three plant functional types-grasses, savanna trees, and forest trees. Grass and (when they allow grass to persist in their subcanopy) savanna trees promote the spread of fires, which in turn, demographically limit trees. The model exhibits a spectacular range of behaviors. In addition to bistability, analysis reveals (i) that diverse cyclic behaviors (including limit and homo- and heteroclinic cycles) occur for broad ranges of parameter space, (ii) that large shifts in landscape structure can result from endogenous dynamics and not just from external drivers or from noise, and (iii) that introducing noise into this system induces resonant and inverse resonant phenomena, some of which have never been previously observed in ecological models. Ecologically, these results raise questions about how to evaluate complicated dynamics with data. Mathematically, they lead to classes of behaviors that are likely to occur in other models with similar structure.
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15
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Mankin R, Paekivi S. Memory-induced resonancelike suppression of spike generation in a resonate-and-fire neuron model. Phys Rev E 2018; 97:012125. [PMID: 29448468 DOI: 10.1103/physreve.97.012125] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Indexed: 06/08/2023]
Abstract
The behavior of a stochastic resonate-and-fire neuron model based on a reduction of a fractional noise-driven generalized Langevin equation (GLE) with a power-law memory kernel is considered. The effect of temporally correlated random activity of synaptic inputs, which arise from other neurons forming local and distant networks, is modeled as an additive fractional Gaussian noise in the GLE. Using a first-passage-time formulation, in certain system parameter domains exact expressions for the output interspike interval (ISI) density and for the survival probability (the probability that a spike is not generated) are derived and their dependence on input parameters, especially on the memory exponent, is analyzed. In the case of external white noise, it is shown that at intermediate values of the memory exponent the survival probability is significantly enhanced in comparison with the cases of strong and weak memory, which causes a resonancelike suppression of the probability of spike generation as a function of the memory exponent. Moreover, an examination of the dependence of multimodality in the ISI distribution on input parameters shows that there exists a critical memory exponent α_{c}≈0.402, which marks a dynamical transition in the behavior of the system. That phenomenon is illustrated by a phase diagram describing the emergence of three qualitatively different structures of the ISI distribution. Similarities and differences between the behavior of the model at internal and external noises are also discussed.
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Affiliation(s)
- Romi Mankin
- School of Natural Sciences and Health, Tallinn University, 29 Narva Road, 10120 Tallinn, Estonia
| | - Sander Paekivi
- School of Natural Sciences and Health, Tallinn University, 29 Narva Road, 10120 Tallinn, Estonia
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16
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Uzuntarla M, Barreto E, Torres JJ. Inverse stochastic resonance in networks of spiking neurons. PLoS Comput Biol 2017; 13:e1005646. [PMID: 28692643 PMCID: PMC5524418 DOI: 10.1371/journal.pcbi.1005646] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2017] [Revised: 07/24/2017] [Accepted: 06/26/2017] [Indexed: 11/18/2022] Open
Abstract
Inverse Stochastic Resonance (ISR) is a phenomenon in which the average spiking rate of a neuron exhibits a minimum with respect to noise. ISR has been studied in individual neurons, but here, we investigate ISR in scale-free networks, where the average spiking rate is calculated over the neuronal population. We use Hodgkin-Huxley model neurons with channel noise (i.e., stochastic gating variable dynamics), and the network connectivity is implemented via electrical or chemical connections (i.e., gap junctions or excitatory/inhibitory synapses). We find that the emergence of ISR depends on the interplay between each neuron's intrinsic dynamical structure, channel noise, and network inputs, where the latter in turn depend on network structure parameters. We observe that with weak gap junction or excitatory synaptic coupling, network heterogeneity and sparseness tend to favor the emergence of ISR. With inhibitory coupling, ISR is quite robust. We also identify dynamical mechanisms that underlie various features of this ISR behavior. Our results suggest possible ways of experimentally observing ISR in actual neuronal systems.
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Affiliation(s)
- Muhammet Uzuntarla
- Department of Biomedical Engineering, Bulent Ecevit University, Engineering Faculty, Zonguldak, Turkey
| | - Ernest Barreto
- Department of Physics and Astronomy and The Krasnow Institute for Advanced Study, George Mason University, Fairfax, Virginia, United States of America
| | - Joaquin J. Torres
- Department of Electromagnetism and Physics of Matter, and Institute Carlos I for Theoretical and Computational Physics, University of Granada, Granada, Spain
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17
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Uzuntarla M, Torres JJ, So P, Ozer M, Barreto E. Double inverse stochastic resonance with dynamic synapses. Phys Rev E 2017; 95:012404. [PMID: 28208458 DOI: 10.1103/physreve.95.012404] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2016] [Indexed: 06/06/2023]
Abstract
We investigate the behavior of a model neuron that receives a biophysically realistic noisy postsynaptic current based on uncorrelated spiking activity from a large number of afferents. We show that, with static synapses, such noise can give rise to inverse stochastic resonance (ISR) as a function of the presynaptic firing rate. We compare this to the case with dynamic synapses that feature short-term synaptic plasticity and show that the interval of presynaptic firing rate over which ISR exists can be extended or diminished. We consider both short-term depression and facilitation. Interestingly, we find that a double inverse stochastic resonance (DISR), with two distinct wells centered at different presynaptic firing rates, can appear.
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Affiliation(s)
- Muhammet Uzuntarla
- Department of Biomedical Engineering, Bulent Ecevit University, 67100 Zonguldak, Turkey
| | - Joaquin J Torres
- Department of Electromagnetism and Physics of the Matter and Institute Carlos I for Theoretical and Computational Physics, University of Granada, E-18071 Granada, Spain
| | - Paul So
- Department of Physics and Astronomy and the Krasnow Institute for Advanced Study, George Mason University, Fairfax, Virginia 22030, USA
| | - Mahmut Ozer
- Department of Electrical and Electronics Engineering, Bulent Ecevit University, 67100 Zonguldak, Turkey
| | - Ernest Barreto
- Department of Physics and Astronomy and the Krasnow Institute for Advanced Study, George Mason University, Fairfax, Virginia 22030, USA
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18
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Huh JH. Inverse stochastic resonance in electroconvection by multiplicative colored noise. Phys Rev E 2016; 94:052702. [PMID: 27967018 DOI: 10.1103/physreve.94.052702] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2016] [Indexed: 06/06/2023]
Abstract
A kind of inverse stochastic resonance (ISR) observed in ac-driven electroconvection (EC) in a nematic liquid crystal is presented. In successive pattern evolutions by increasing noise intensity V_{N}, a typical EC (with a normalized amplitude A_{0}=1 at V_{N}=0) disappears (A_{0}→0), and then the rest state (A_{0}=0) reenters into the EC (A_{0}=1); eventually, it develops into complicated EC(A_{0}>1). The reversed bell-shaped behavior of A_{0}(V_{N}) is evidence of ISR. The present ISR may be explained by taking into account colored noise characterized by its intensity and correlation time.
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Affiliation(s)
- Jong-Hoon Huh
- Department of Mechanical Information Science and Technology, Faculty of Computer Science and Systems Engineering, Kyushu Institute of Technology, Fukuoka 820-8502, Japan
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19
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Buchin A, Rieubland S, Häusser M, Gutkin BS, Roth A. Inverse Stochastic Resonance in Cerebellar Purkinje Cells. PLoS Comput Biol 2016; 12:e1005000. [PMID: 27541958 PMCID: PMC4991839 DOI: 10.1371/journal.pcbi.1005000] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Accepted: 05/29/2016] [Indexed: 11/18/2022] Open
Abstract
Purkinje neurons play an important role in cerebellar computation since their axons are the only projection from the cerebellar cortex to deeper cerebellar structures. They have complex internal dynamics, which allow them to fire spontaneously, display bistability, and also to be involved in network phenomena such as high frequency oscillations and travelling waves. Purkinje cells exhibit type II excitability, which can be revealed by a discontinuity in their f-I curves. We show that this excitability mechanism allows Purkinje cells to be efficiently inhibited by noise of a particular variance, a phenomenon known as inverse stochastic resonance (ISR). While ISR has been described in theoretical models of single neurons, here we provide the first experimental evidence for this effect. We find that an adaptive exponential integrate-and-fire model fitted to the basic Purkinje cell characteristics using a modified dynamic IV method displays ISR and bistability between the resting state and a repetitive activity limit cycle. ISR allows the Purkinje cell to operate in different functional regimes: the all-or-none toggle or the linear filter mode, depending on the variance of the synaptic input. We propose that synaptic noise allows Purkinje cells to quickly switch between these functional regimes. Using mutual information analysis, we demonstrate that ISR can lead to a locally optimal information transfer between the input and output spike train of the Purkinje cell. These results provide the first experimental evidence for ISR and suggest a functional role for ISR in cerebellar information processing. How neurons generate output spikes in response to various combinations of inputs is a central issue in contemporary neuroscience. Due to their large dendritic tree and complex intrinsic properties, cerebellar Purkinje cells are an important model system to study this input-output transformation. Here we examine how noise can change the parameters of this transformation. In experiments we found that spike generation in Purkinje cells can be efficiently inhibited by noise of a particular amplitude. This effect is called inverse stochastic resonance (ISR) and has previously been described only in theoretical models of neurons. We explain the mechanism underlying ISR using a simple model matching the properties of experimentally characterized Purkinje cells. We found that ISR is present in Purkinje cells when the mean input current is near threshold for spike generation. ISR can be explained by the co-existence of resting and spiking solutions of the simple model. Changes of the input noise variance change the lifetime of these resting and spiking states, suggesting a mechanism for a tunable filter with long time constants implemented by a Purkinje cell population in the cerebellum. Finally, ISR leads to locally optimal information transfer from the input to the output of a Purkinje cell.
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Affiliation(s)
- Anatoly Buchin
- Group for Neural Theory, Laboratoire des Neurosciences Cognitives, École Normale Supérieure, Paris, France
- Institute of Physics, Nanotechnology and Telecommunications, Peter the Great St. Petersburg Polytechnic University, Saint Petersburg, Russia
- Center for Cognition and Decision Making, Department of Psychology, NRU Higher School of Economics, Moscow, Russia
- * E-mail:
| | - Sarah Rieubland
- Wolfson Institute for Biomedical Research and Department of Neuroscience, Physiology and Pharmacology, University College London, London, United Kingdom
| | - Michael Häusser
- Wolfson Institute for Biomedical Research and Department of Neuroscience, Physiology and Pharmacology, University College London, London, United Kingdom
| | - Boris S. Gutkin
- Group for Neural Theory, Laboratoire des Neurosciences Cognitives, École Normale Supérieure, Paris, France
- Center for Cognition and Decision Making, Department of Psychology, NRU Higher School of Economics, Moscow, Russia
| | - Arnd Roth
- Wolfson Institute for Biomedical Research and Department of Neuroscience, Physiology and Pharmacology, University College London, London, United Kingdom
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20
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Reliability of neuronal information conveyed by unreliable neuristor-based leaky integrate-and-fire neurons: a model study. Sci Rep 2015; 5:9776. [PMID: 25966658 PMCID: PMC4429369 DOI: 10.1038/srep09776] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2014] [Accepted: 03/19/2015] [Indexed: 11/08/2022] Open
Abstract
We conducted simulations on the neuronal behavior of neuristor-based leaky integrate-and-fire (NLIF) neurons. The phase-plane analysis on the NLIF neuron highlights its spiking dynamics – determined by two nullclines conditional on the variables on the plane. Particular emphasis was placed on the operational noise arising from the variability of the threshold switching behavior in the neuron on each switching event. As a consequence, we found that the NLIF neuron exhibits a Poisson-like noise in spiking, delimiting the reliability of the information conveyed by individual NLIF neurons. To highlight neuronal information coding at a higher level, a population of noisy NLIF neurons was analyzed in regard to probability of successful information decoding given the Poisson-like noise of each neuron. The result demonstrates highly probable success in decoding in spite of large variability – due to the variability of the threshold switching behavior – of individual neurons.
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21
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Braun W, Matthews PC, Thul R. First-passage times in integrate-and-fire neurons with stochastic thresholds. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 91:052701. [PMID: 26066193 DOI: 10.1103/physreve.91.052701] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2014] [Indexed: 06/04/2023]
Abstract
We consider a leaky integrate-and-fire neuron with deterministic subthreshold dynamics and a firing threshold that evolves as an Ornstein-Uhlenbeck process. The formulation of this minimal model is motivated by the experimentally observed widespread variation of neural firing thresholds. We show numerically that the mean first-passage time can depend nonmonotonically on the noise amplitude. For sufficiently large values of the correlation time of the stochastic threshold the mean first-passage time is maximal for nonvanishing noise. We provide an explanation for this effect by analytically transforming the original model into a first-passage-time problem for Brownian motion. This transformation also allows for a perturbative calculation of the first-passage-time histograms. In turn this provides quantitative insights into the mechanisms that lead to the nonmonotonic behavior of the mean first-passage time. The perturbation expansion is in excellent agreement with direct numerical simulations. The approach developed here can be applied to any deterministic subthreshold dynamics and any Gauss-Markov processes for the firing threshold. This opens up the possibility to incorporate biophysically detailed components into the subthreshold dynamics, rendering our approach a powerful framework that sits between traditional integrate-and-fire models and complex mechanistic descriptions of neural dynamics.
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Affiliation(s)
- Wilhelm Braun
- School of Mathematical Sciences and Centre for Mathematical Medicine and Biology, University of Nottingham, University Park, Nottingham, NG7 2RD, United Kingdom
| | - Paul C Matthews
- School of Mathematical Sciences and Centre for Mathematical Medicine and Biology, University of Nottingham, University Park, Nottingham, NG7 2RD, United Kingdom
| | - Rüdiger Thul
- School of Mathematical Sciences and Centre for Mathematical Medicine and Biology, University of Nottingham, University Park, Nottingham, NG7 2RD, United Kingdom
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22
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McDonnell MD, Iannella N, To MS, Tuckwell HC, Jost J, Gutkin BS, Ward LM. A review of methods for identifying stochastic resonance in simulations of single neuron models. NETWORK (BRISTOL, ENGLAND) 2015; 26:35-71. [PMID: 25760433 DOI: 10.3109/0954898x.2014.990064] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Stochastic resonance (SR) is said to be observed when the presence of noise in a nonlinear system enables an output signal from the system to better represent some feature of an input signal than it does in the absence of noise. The effect has been observed in models of individual neurons, and in experiments performed on real neural systems. Despite the ubiquity of biophysical sources of stochastic noise in the nervous system, however, it has not yet been established whether neuronal computation mechanisms involved in performance of specific functions such as perception or learning might exploit such noise as an integral component, such that removal of the noise would diminish performance of these functions. In this paper we revisit the methods used to demonstrate stochastic resonance in models of single neurons. This includes a previously unreported observation in a multicompartmental model of a CA1-pyramidal cell. We also discuss, as a contrast to these classical studies, a form of 'stochastic facilitation', known as inverse stochastic resonance. We draw on the reviewed examples to argue why new approaches to studying 'stochastic facilitation' in neural systems need to be developed.
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Affiliation(s)
- Mark D McDonnell
- Computational and Theoretical Neuroscience Laboratory, Institute for Telecommunications Research, University of South Australia , Mawson Lakes, SA , Australia
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23
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Tsuneki R, Doi S, Inoue J. Generation of slow phase-locked oscillation and variability of the interspike intervals in globally coupled neuronal oscillators. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2014; 11:125-138. [PMID: 24245673 DOI: 10.3934/mbe.2014.11.125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
To elucidate how a biological rhythm is regulated, the extended (three-dimensional) Bonhoeffer-van der Pol or FitzHugh-Nagumo equations are employed to investigate the dynamics of a population of neuronal oscillators globally coupled through a common buffer (mean field). Interesting phenomena, such as extraordinarily slow phase-locked oscillations (compared to the natural period of each neuronal oscillator) and the death of all oscillations, are observed. We demonstrate that the slow synchronization is due mainly to the existence of "fast" oscillators. Additionally, we examine the effect of noise on the synchronization and variability of the interspike intervals. Peculiar phenomena, such as noise-induced acceleration and deceleration, are observed. The results herein suggest that very small noise may significantly influence a biological rhythm.
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Affiliation(s)
- Ryotaro Tsuneki
- Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan.
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24
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Schmerl BA, McDonnell MD. Channel-noise-induced stochastic facilitation in an auditory brainstem neuron model. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 88:052722. [PMID: 24329311 DOI: 10.1103/physreve.88.052722] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2013] [Revised: 10/14/2013] [Indexed: 06/03/2023]
Abstract
Neuronal membrane potentials fluctuate stochastically due to conductance changes caused by random transitions between the open and closed states of ion channels. Although it has previously been shown that channel noise can nontrivially affect neuronal dynamics, it is unknown whether ion-channel noise is strong enough to act as a noise source for hypothesized noise-enhanced information processing in real neuronal systems, i.e., "stochastic facilitation". Here we demonstrate that biophysical models of channel noise can give rise to two kinds of recently discovered stochastic facilitation effects in a Hodgkin-Huxley-like model of auditory brainstem neurons. The first, known as slope-based stochastic resonance (SBSR), enables phasic neurons to emit action potentials that can encode the slope of inputs that vary slowly relative to key time constants in the model. The second, known as inverse stochastic resonance (ISR), occurs in tonically firing neurons when small levels of noise inhibit tonic firing and replace it with burstlike dynamics. Consistent with previous work, we conclude that channel noise can provide significant variability in firing dynamics, even for large numbers of channels. Moreover, our results show that possible associated computational benefits may occur due to channel noise in neurons of the auditory brainstem. This holds whether the firing dynamics in the model are phasic (SBSR can occur due to channel noise) or tonic (ISR can occur due to channel noise).
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Affiliation(s)
- Brett A Schmerl
- Computational and Theoretical Neuroscience Laboratory, Institute for Telecommunications Research, University of South Australia, South Australia 5095, Australia
| | - Mark D McDonnell
- Computational and Theoretical Neuroscience Laboratory, Institute for Telecommunications Research, University of South Australia, South Australia 5095, Australia
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25
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Uzuntarla M, Cressman JR, Ozer M, Barreto E. Dynamical structure underlying inverse stochastic resonance and its implications. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 88:042712. [PMID: 24229218 DOI: 10.1103/physreve.88.042712] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2013] [Indexed: 06/02/2023]
Abstract
We investigate inverse stochastic resonance (ISR), a recently reported phenomenon in which the spiking activity of a Hodgkin-Huxley model neuron subject to external noise exhibits a pronounced minimum as the noise intensity increases. We clarify the mechanism that underlies ISR and show that its most surprising features are a consequence of the dynamical structure of the model. Furthermore, we show that the ISR effect depends strongly on the procedures used to measure it. Our results are important for the experimentalist who seeks to observe the ISR phenomenon.
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Affiliation(s)
- Muhammet Uzuntarla
- Department of Biomedical Engineering, Bulent Ecevit University, Zonguldak, Turkey
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26
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Sejdić E, Lipsitz LA. Necessity of noise in physiology and medicine. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2013; 111:459-70. [PMID: 23639753 PMCID: PMC3987774 DOI: 10.1016/j.cmpb.2013.03.014] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2012] [Revised: 12/10/2012] [Accepted: 03/22/2013] [Indexed: 05/25/2023]
Abstract
Noise is omnipresent in biomedical systems and signals. Conventional views assume that its presence is detrimental to systems' performance and accuracy. Hence, various analytic approaches and instrumentation have been designed to remove noise. On the contrary, recent contributions have shown that noise can play a beneficial role in biomedical systems. The results of this literature review indicate that noise is an essential part of biomedical systems and often plays a fundamental role in the performance of these systems. Furthermore, in preliminary work, noise has demonstrated therapeutic potential to alleviate the effects of various diseases. Further research into the role of noise and its applications in medicine is likely to lead to novel approaches to the treatment of diseases and prevention of disability.
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Affiliation(s)
- Ervin Sejdić
- Department of Electrical and Computer Engineering, Swanson School of Enginering, University of Pittsburgh, Pittsburgh, PA, 15261, USA
| | - Lewis A. Lipsitz
- Harvard Medical School, Beth Israel Deaconess Medical Center and Hebrew Senior Life, Boston, MA 02131, USA
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27
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Schmidt S, Scholz M, Obermayer K, Brandt SA. Patterned Brain Stimulation, What a Framework with Rhythmic and Noisy Components Might Tell Us about Recovery Maximization. Front Hum Neurosci 2013; 7:325. [PMID: 23825456 PMCID: PMC3695464 DOI: 10.3389/fnhum.2013.00325] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2013] [Accepted: 06/12/2013] [Indexed: 12/02/2022] Open
Abstract
Brain stimulation is having remarkable impact on clinical neurology. Brain stimulation can modulate neuronal activity in functionally segregated circumscribed regions of the human brain. Polarity, frequency, and noise specific stimulation can induce specific manipulations on neural activity. In contrast to neocortical stimulation, deep-brain stimulation has become a tool that can dramatically improve the impact clinicians can possibly have on movement disorders. In contrast, neocortical brain stimulation is proving to be remarkably susceptible to intrinsic brain-states. Although evidence is accumulating that brain stimulation can facilitate recovery processes in patients with cerebral stroke, the high variability of results impedes successful clinical implementation. Interestingly, recent data in healthy subjects suggests that brain-state dependent patterned stimulation might help resolve some of the intrinsic variability found in previous studies. In parallel, other studies suggest that noisy “stochastic resonance” (SR)-like processes are a non-negligible component in non-invasive brain stimulation studies. The hypothesis developed in this manuscript is that stimulation patterning with noisy and oscillatory components will help patients recover from stroke related deficits more reliably. To address this hypothesis we focus on two factors common to both neural computation (intrinsic variables) as well as brain stimulation (extrinsic variables): noise and oscillation. We review diverse theoretical and experimental evidence that demonstrates that subject-function specific brain-states are associated with specific oscillatory activity patterns. These states are transient and can be maintained by noisy processes. The resulting control procedures can resemble homeostatic or SR processes. In this context we try to extend awareness for inter-individual differences and the use of individualized stimulation in the recovery maximization of stroke patients.
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Affiliation(s)
- Sein Schmidt
- Neurology, Vision and Motor Systems Research Group, Charité - Universitätsmedizin Berlin , Berlin , Germany
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28
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Malashchenko T, Shilnikov A, Cymbalyuk G. Bistability of bursting and silence regimes in a model of a leech heart interneuron. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 84:041910. [PMID: 22181178 DOI: 10.1103/physreve.84.041910] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2010] [Revised: 05/03/2011] [Indexed: 05/31/2023]
Abstract
Bursting is one of the primary activity regimes of neurons. Our study is focused on determining a generic biophysical mechanism underlying the coexistence of the bursting and silent regimes observed in a neuron model. We show that the main ingredient for this mechanism is a saddle periodic orbit. The stable manifold of the orbit sets a threshold between the regimes of activity. Thus, the range of the controlling parameters, where the coexistence is observed, is limited by the bifurcations' values at which the saddle orbit appears and disappears. We show that it appears through the subcritical Andronov-Hopf bifurcation, where the equilibrium representing the silent regime loses stability, and disappears at the homoclinic bifurcation. Correspondingly, the bursting regime disappears in close proximity to the homoclinic bifurcation.
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Affiliation(s)
- Tatiana Malashchenko
- Neuroscience Institute, Georgia State University, 100 Piedmont Avenue SE, Atlanta, Georgia 30303, USA
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29
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Malashchenko T, Shilnikov A, Cymbalyuk G. Six types of multistability in a neuronal model based on slow calcium current. PLoS One 2011; 6:e21782. [PMID: 21814554 PMCID: PMC3140973 DOI: 10.1371/journal.pone.0021782] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2011] [Accepted: 06/09/2011] [Indexed: 11/19/2022] Open
Abstract
BACKGROUND Multistability of oscillatory and silent regimes is a ubiquitous phenomenon exhibited by excitable systems such as neurons and cardiac cells. Multistability can play functional roles in short-term memory and maintaining posture. It seems to pose an evolutionary advantage for neurons which are part of multifunctional Central Pattern Generators to possess multistability. The mechanisms supporting multistability of bursting regimes are not well understood or classified. METHODOLOGY/PRINCIPAL FINDINGS Our study is focused on determining the bio-physical mechanisms underlying different types of co-existence of the oscillatory and silent regimes observed in a neuronal model. We develop a low-dimensional model typifying the dynamics of a single leech heart interneuron. We carry out a bifurcation analysis of the model and show that it possesses six different types of multistability of dynamical regimes. These types are the co-existence of 1) bursting and silence, 2) tonic spiking and silence, 3) tonic spiking and subthreshold oscillations, 4) bursting and subthreshold oscillations, 5) bursting, subthreshold oscillations and silence, and 6) bursting and tonic spiking. These first five types of multistability occur due to the presence of a separating regime that is either a saddle periodic orbit or a saddle equilibrium. We found that the parameter range wherein multistability is observed is limited by the parameter values at which the separating regimes emerge and terminate. CONCLUSIONS We developed a neuronal model which exhibits a rich variety of different types of multistability. We described a novel mechanism supporting the bistability of bursting and silence. This neuronal model provides a unique opportunity to study the dynamics of networks with neurons possessing different types of multistability.
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Affiliation(s)
- Tatiana Malashchenko
- Department of Physics and Astronomy, Georgia State University, Atlanta, Georgia, United States of America
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30
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Guo D. Inhibition of rhythmic spiking by colored noise in neural systems. Cogn Neurodyn 2011; 5:293-300. [PMID: 22942918 DOI: 10.1007/s11571-011-9160-2] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2011] [Revised: 06/11/2011] [Accepted: 06/14/2011] [Indexed: 11/27/2022] Open
Abstract
We study the effect of colored noise on the rhythmic spiking activity of neural systems in this paper. The phenomenon of the so-called inverse stochastic resonance , that is, noise with appropriate intensity suppresses the spiking activity in neural systems, is clearly observed in a special parameter regime. We find that the inhibition effect of colored noise is stronger than that of Gaussian white noise. Furthermore, our simulation results show that the inhibition effect of colored noise provides a useful mechanism for the generation of synchronized burst in type-2 mixed-feed-forward-feedback loop neuronal network motif, which indicates that such inhibition effect might have some biological implications.
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Affiliation(s)
- Daqing Guo
- School of Electronic Engineering, University of Electronic Science and Technology of China, Chengdu, 610054 People's Republic of China
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31
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McDonnell MD, Ward LM. The benefits of noise in neural systems: bridging theory and experiment. Nat Rev Neurosci 2011; 12:415-26. [PMID: 21685932 DOI: 10.1038/nrn3061] [Citation(s) in RCA: 387] [Impact Index Per Article: 29.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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32
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Borkowski LS. Bistability and resonance in the periodically stimulated Hodgkin-Huxley model with noise. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 83:051901. [PMID: 21728566 DOI: 10.1103/physreve.83.051901] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2010] [Revised: 03/07/2011] [Indexed: 05/31/2023]
Abstract
We describe general characteristics of the Hodgkin-Huxley neuron's response to a periodic train of short current pulses with Gaussian noise. The deterministic neuron is bistable for antiresonant frequencies. When the stimuli arrive at the resonant frequency the firing rate is a continuous function of the current amplitude I(0) and scales as (I(0)-I(th))(1/2), characteristic of a saddle-node bifurcation at the threshold I(th). Intervals of continuous irregular response alternate with integer mode-locked regions with bistable excitation edge. There is an even-all multimodal transition between the 2 : 1 and 3 : 1 states in the vicinity of the main resonance, which is analogous to the odd-all transition discovered earlier in the high-frequency regime. For I(0)<I(th) and small noise the firing rate has a maximum at the resonant frequency. For larger noise and subthreshold stimulation the maximum firing rate initially shifts toward lower frequencies, then returns to higher frequencies in the limit of large noise. The stochastic coherence antiresonance, defined as a simultaneous occurrence of (i) the maximum of the coefficient of variation and (ii) the minimum of the firing rate vs the noise intensity, occurs over a wide range of parameter values, including monostable regions. Results of this work can be verified experimentally.
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Affiliation(s)
- L S Borkowski
- Department of Physics, Adam Mickiewicz University, Poznan, Poland
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33
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Borkowski LS. Multimodal transition and stochastic antiresonance in squid giant axons. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2010; 82:041909. [PMID: 21230315 DOI: 10.1103/physreve.82.041909] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2010] [Indexed: 05/30/2023]
Abstract
The experimental data of Takahashi [Physica D 43, 318 (1990)], on the response of squid giant axons stimulated by periodic sequence of short current pulses is interpreted within the Hodgkin-Huxley model. The minimum of the firing rate as a function of the stimulus amplitude I0 in the high-frequency regime is due to the multimodal transition. Below this singular point only odd multiples of the driving period remain and the system is sensitive to noise. The coefficient of variation has a maximum and the firing rate has a minimum as a function of the noise intensity, which is an indication of the stochastic coherence antiresonance. The model calculations reproduce the frequency of occurrence of the most common modes in the vicinity of the transition. A linear relation of output frequency vs I0 above the transition is also confirmed.
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Affiliation(s)
- L S Borkowski
- Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61-614 Poznan, Poland
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Iannella NL, Launey T, Tanaka S. Spike timing-dependent plasticity as the origin of the formation of clustered synaptic efficacy engrams. Front Comput Neurosci 2010; 4. [PMID: 20725522 PMCID: PMC2914531 DOI: 10.3389/fncom.2010.00021] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2010] [Accepted: 06/14/2010] [Indexed: 12/03/2022] Open
Abstract
Synapse location, dendritic active properties and synaptic plasticity are all known to play some role in shaping the different input streams impinging onto a neuron. It remains unclear however, how the magnitude and spatial distribution of synaptic efficacies emerge from this interplay. Here, we investigate this interplay using a biophysically detailed neuron model of a reconstructed layer 2/3 pyramidal cell and spike timing-dependent plasticity (STDP). Specifically, we focus on the issue of how the efficacy of synapses contributed by different input streams are spatially represented in dendrites after STDP learning. We construct a simple feed forward network where a detailed model neuron receives synaptic inputs independently from multiple yet equally sized groups of afferent fibers with correlated activity, mimicking the spike activity from different neuronal populations encoding, for example, different sensory modalities. Interestingly, ensuing STDP learning, we observe that for all afferent groups, STDP leads to synaptic efficacies arranged into spatially segregated clusters effectively partitioning the dendritic tree. These segregated clusters possess a characteristic global organization in space, where they form a tessellation in which each group dominates mutually exclusive regions of the dendrite. Put simply, the dendritic imprint from different input streams left after STDP learning effectively forms what we term a “dendritic efficacy mosaic.” Furthermore, we show how variations of the inputs and STDP rule affect such an organization. Our model suggests that STDP may be an important mechanism for creating a clustered plasticity engram, which shapes how different input streams are spatially represented in dendrite.
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Tuckwell HC, Jost J. Weak noise in neurons may powerfully inhibit the generation of repetitive spiking but not its propagation. PLoS Comput Biol 2010; 6:e1000794. [PMID: 20523741 PMCID: PMC2877724 DOI: 10.1371/journal.pcbi.1000794] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2009] [Accepted: 04/23/2010] [Indexed: 11/24/2022] Open
Abstract
Many neurons have epochs in which they fire action potentials in an approximately periodic fashion. To see what effects noise of relatively small amplitude has on such repetitive activity we recently examined the response of the Hodgkin-Huxley (HH) space-clamped system to such noise as the mean and variance of the applied current vary, near the bifurcation to periodic firing. This article is concerned with a more realistic neuron model which includes spatial extent. Employing the Hodgkin-Huxley partial differential equation system, the deterministic component of the input current is restricted to a small segment whereas the stochastic component extends over a region which may or may not overlap the deterministic component. For mean values below, near and above the critical values for repetitive spiking, the effects of weak noise of increasing strength is ascertained by simulation. As in the point model, small amplitude noise near the critical value dampens the spiking activity and leads to a minimum as noise level increases. This was the case for both additive noise and conductance-based noise. Uniform noise along the whole neuron is only marginally more effective in silencing the cell than noise which occurs near the region of excitation. In fact it is found that if signal and noise overlap in spatial extent, then weak noise may inhibit spiking. If, however, signal and noise are applied on disjoint intervals, then the noise has no effect on the spiking activity, no matter how large its region of application, though the trajectories are naturally altered slightly by noise. Such effects could not be discerned in a point model and are important for real neuron behavior. Interference with the spike train does nevertheless occur when the noise amplitude is larger, even when noise and signal do not overlap, being due to the instigation of secondary noise-induced wave phenomena rather than switching the system from one attractor (firing regularly) to another (a stable point).
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Affiliation(s)
- Henry C Tuckwell
- Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany.
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