1
|
Nazarian Z, Arab SS. Discovery of carboxylesterases via metagenomics: Putative enzymes that contribute to chemical kinetic resolution. Process Biochem 2022. [DOI: 10.1016/j.procbio.2022.07.025] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
|
2
|
Şahin E. Production of enantiopure chiral aryl heteroaryl carbinols using whole‐cell Lactobacillus paracasei biotransformation. SYNTHETIC COMMUN 2019. [DOI: 10.1080/00397911.2019.1707226] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Engin Şahin
- Department of Food Engineering, Faculty of Engineering, Bayburt University, Bayburt, Turkey
| |
Collapse
|
3
|
Çolak NS, Şahin E, Dertli E, Yilmaz MT, Taylan O. Response surface methodology as optimization strategy for asymmetric bioreduction of acetophenone using whole cell of Lactobacillus senmaizukei. Prep Biochem Biotechnol 2019; 49:884-890. [DOI: 10.1080/10826068.2019.1633668] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Nida Sezin Çolak
- Faculty of Engineering, Department of Food Engineering, Bayburt University, Bayburt, Turkey
| | - Engin Şahin
- Faculty of Engineering, Department of Food Engineering, Bayburt University, Bayburt, Turkey
| | - Enes Dertli
- Faculty of Engineering, Department of Food Engineering, Bayburt University, Bayburt, Turkey
| | - Mustafa Tahsin Yilmaz
- Faculty of Engineering, Department of Industrial Engineering, King Abdulaziz University, Jeddah, Saudi Arabia
| | - Osman Taylan
- Faculty of Engineering, Department of Industrial Engineering, King Abdulaziz University, Jeddah, Saudi Arabia
| |
Collapse
|
4
|
Tozlu C, Şahin E, Serencam H, Dertli E. Production of enantiomerically enriched chiral carbinols using Weissella paramesenteroides as a novel whole cell biocatalyst. BIOCATAL BIOTRANSFOR 2019. [DOI: 10.1080/10242422.2019.1568416] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Caner Tozlu
- Department of Food Engineering, Faculty of Engineering, Bayburt University, Bayburt, Turkey
| | - Engin Şahin
- Department of Food Engineering, Faculty of Engineering, Bayburt University, Bayburt, Turkey
| | - Hüseyin Serencam
- Department of Food Engineering, Faculty of Engineering, Bayburt University, Bayburt, Turkey
| | - Enes Dertli
- Department of Food Engineering, Faculty of Engineering, Bayburt University, Bayburt, Turkey
| |
Collapse
|
5
|
Wang Y, Xu S, Li R, Sun A, Zhang Y, Sai K, Hu Y. Characterization of one novel microbial esterase WDEst9 and its use to make l-methyl lactate. BIOCATAL BIOTRANSFOR 2018. [DOI: 10.1080/10242422.2018.1526926] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Yilong Wang
- CAS Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
- Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
| | - Shan Xu
- Department of Biotechnology, Jinan University, Guangzhou, China
| | - Renqiang Li
- Department of Biotechnology, Jinan University, Guangzhou, China
| | - Aijun Sun
- CAS Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
- Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
| | - Yun Zhang
- CAS Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
- Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
| | - Ke Sai
- Department of Neurosurgery/Neuro-oncology, Sun Yat-sen University Cancer Center, Guangzhou, China
- Collaborative Innovation Center for Cancer Medicine, Guangzhou, China
- State Key Laboratory of Oncology in South China, Guangzhou, China
| | - Yunfeng Hu
- CAS Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
- Guangdong Key Laboratory of Marine Materia Medica, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
| |
Collapse
|
6
|
Functional Characterization of a Marine Bacillus Esterase and its Utilization in the Stereo-Selective Production of D-Methyl Lactate. Appl Biochem Biotechnol 2016; 180:1467-1481. [PMID: 27364331 DOI: 10.1007/s12010-016-2180-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2016] [Accepted: 06/22/2016] [Indexed: 10/21/2022]
Abstract
Chiral lactic acid and its ester derivatives are crucial building blocks and platforms in the generation of high value-added drugs, fine chemicals and functional materials. Optically pure D-lactic acid and its ester derivatives cannot be directly generated from fermentation and are quite expensive. Herein, we identified, heterologously expressed and functionally characterized one Bacillus esterase BSE01701 from the deep sea of the Indian Ocean. Esterase BSE01701 could enzymatically resolve inexpensive racemic methyl lactate and generate chiral D-methyl lactate. The enantiomeric excess of desired chiral D-methyl lactate and the substrate conversion could reach over 99 % and 60 %, respectively, after process optimization. Notably, the addition of 60 % (v/v) organic co-solvent heptane could greatly improve both the enantiomeric excess of D-methyl lactate and the conversion. BSE01701 was a very promising marine microbial esterase in the generation of chiral chemicals in industry.
Collapse
|
7
|
Gao K, Li L, He L, Hinkle K, Wu Y, Ma J, Chang L, Zhao X, Perez DG, Eckardt S, McLaughlin J, Liu B, Farson DF, Lee LJ. Design of a microchannel-nanochannel-microchannel array based nanoelectroporation system for precise gene transfection. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2014; 10:1015-23. [PMID: 24173879 DOI: 10.1002/smll.201300116] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2013] [Revised: 07/05/2013] [Indexed: 05/14/2023]
Abstract
A micro/nano-fabrication process of a nanochannel electroporation (NEP) array and its application for precise delivery of plasmid for non-viral gene transfection is described. A dip-combing device is optimized to produce DNA nanowires across a microridge array patterned on the polydimethylsiloxane (PDMS) surface with a yield up to 95%. Molecular imprinting based on a low viscosity resin, 1,4-butanediol diacrylate (1,4-BDDA), adopted to convert the microridge-nanowire-microridge array into a microchannel-nanochannel-microchannel (MNM) array. Secondary machining by femtosecond laser ablation is applied to shorten one side of microchannels from 3000 to 50 μm to facilitate cell loading and unloading. The biochip is then sealed in a packaging case with reservoirs and microfluidic channels to enable cell and plasmid loading, and to protect the biochip from leakage and contamination. The package case can be opened for cell unloading after NEP to allow for the follow-up cell culture and analysis. These NEP cases can be placed in a spinning disc and up to ten discs can be piled together for spinning. The resulting centrifugal force can simultaneously manipulate hundreds or thousands of cells into microchannels of NEP arrays within 3 minutes. To demonstrate its application, a 13 kbp OSKM plasmid of induced pluripotent stem cell (iPSC) is injected into mouse embryonic fibroblasts cells (MEFCs). Fluorescence detection of transfected cells within the NEP biochips shows that the delivered dosage is high and much more uniform compared with similar gene transfection carried out by the conventional bulk electroporation (BEP) method.
Collapse
Affiliation(s)
- Keliang Gao
- Nanoscale Science and Engineering Center for Affordable Nanoengineering of Polymeric Biomedical Devices, The Ohio State University, Columbus, Ohio, 43210, USA
| | | | | | | | | | | | | | | | | | | | | | | | | | | |
Collapse
|
8
|
Kluyveromyces marxianus CBS 6556 growing cells as a new biocatalyst in the asymmetric reduction of substituted acetophenones. ACTA ACUST UNITED AC 2013. [DOI: 10.1016/j.tetasy.2013.02.001] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
9
|
Zilbeyaz K, Kurbanoglu EB. Highly enantiomeric reduction of acetophenone and its derivatives by locally isolated Rhodotorula glutinis. Chirality 2010; 22:849-54. [PMID: 20803750 DOI: 10.1002/chir.20846] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Ninety isolates of microorganisms belonging to different taxonomical groups (30 bacteria, 20 yeast, and 40 fungi) were previously isolated from various samples. These isolates were screened as reducing agents for acetophenone 1a to phenylethanol 2a. It was found that the isolate EBK-10 was the most effective biocatalyst for the enantioselective bioreduction of acetophenone. This isolate was identified as Rhodotorula glutinis by the VITEK 2 Compact system. The various parameters (pH 6.5, temperature 32 degrees C, and agitation 200 rpm) of the bioreduction reaction was optimized, which resulted in conversions up to 100% with >99% enantiomeric excesses (ee) of the S-configuration. The preparative scale bioreduction of acetophenone 1a by R. glutinis EBK-10 gave (S)-1-phenylethanol 2a in 79% yield, complete conversion, and >99% ee. In addition, R.glutinis EBK-10 successfully reduced various substituted acetophenones.
Collapse
Affiliation(s)
- Kani Zilbeyaz
- Science Faculty, Department of Chemistry, Ataturk University, Erzurum 25240, Turkey.
| | | |
Collapse
|
10
|
Wei L, Yang X, Gao K, Lin J, Yang S, Hua Q, Wei D. Characterization of Enzymes in the Oxidation of 1,2-Propanediol to d-(−)-Lactic Acid by Gluconobacter oxydans DSM 2003. Mol Biotechnol 2010; 46:26-33. [DOI: 10.1007/s12033-010-9263-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|
11
|
Efficient Synthesis of (S)-1-(2-chlorophenyl)ethanol in the Submerged Culture of Alternaria alternata Isolate. CHINESE JOURNAL OF CATALYSIS 2009. [DOI: 10.1016/s1872-2067(08)60103-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
|
12
|
Zilbeyaz K, Kurbanoglu EB. Production of (R)-1-(4-Bromo-phenyl)-ethanol by locally isolated Aspergillus niger using ram horn peptone. BIORESOURCE TECHNOLOGY 2008; 99:1549-52. [PMID: 17531472 DOI: 10.1016/j.biortech.2007.04.014] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2007] [Revised: 04/11/2007] [Accepted: 04/11/2007] [Indexed: 05/15/2023]
Abstract
Aspergillus niger EBK-9 was isolated from soil sample. This isolate was evaluated for production of (R)-1-(4-Bromo-phenyl)-ethanol 2 from 1-(4-Bromo-phenyl)-ethanone 1. In this work, the production of the 2 was achieved via fermenter. Glucose, yeast extract and ram horn peptone as medium in fermenter for growth of A. niger was used. A. niger EBK-9 isolate was found to be an effective biocatalyst with excellent enantiomeric excess (>99%) and good conversion (100%) for the production of the 2 in batch culture. The 8.2 mmol/l product from 10 mmol substrate under the optimum conditions could be produced. The yield was calculated as 82%. Because of the easy availability of the fungus besides simple reaction conditions, this process and medium must be potentially useful for production of chiral alcohols.
Collapse
Affiliation(s)
- Kani Zilbeyaz
- Department of Chemistry, Faculty of Arts and Sciences, Atatürk University, 25240, Erzurum, Turkey
| | | |
Collapse
|
13
|
Kurbanoglu EB, Zilbeyaz K, Kurbanoglu NI, Kilic H. Asymmetric reduction of acetophenone analogues by Alternaria alternata using ram horn peptone. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/j.tetasy.2007.09.009] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
14
|
Kurbanoglu EB, Zilbeyaz K, Kurbanoglu NI, Taskin M. Highly enantioselective reduction of acetophenone by locally isolated Alternaria alternata using ram horn peptone. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/j.tetasy.2007.06.013] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
15
|
Katrlík J, Vostiar I, Sefcovicová J, Tkác J, Mastihuba V, Valach M, Stefuca V, Gemeiner P. A novel microbial biosensor based on cells of Gluconobacter oxydans for the selective determination of 1,3-propanediol in the presence of glycerol and its application to bioprocess monitoring. Anal Bioanal Chem 2007; 388:287-95. [PMID: 17393157 DOI: 10.1007/s00216-007-1211-5] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2006] [Revised: 01/16/2007] [Accepted: 02/15/2007] [Indexed: 10/23/2022]
Abstract
Novel and selective microbial amperometric biosensors that use Gluconobacter oxydans cells to monitor the bacterial bioconversion of glycerol (Gly) to 1,3-propanediol (1,3-PD) are described. Two different mediators, ferricyanide and flexible polyvinylimidazole osmium functionalized polymer (Os-polymer), were employed to prepare two different microbial biosensors, both of which gave high detection performance. The good operational stabilities of both types of biosensor were underlined by the ability to detect 1,3-PD throughout 140 h of continuous operation. Both microbial biosensor systems showed excellent selectivity for 1,3-PD in the presence of a high excess of glycerol [selectivity ratios (1,3-PD/Gly) of 118 or 245 for the ferricyanide and Os-polymer systems, respectively]. Further, the robustness of each microbial biosensor was highlighted by the high reliability of 1,3-PD detection achieved (average RSD of standards<2%, and well below 4% for samples). The biosensor implementing the Os-polymer mediator exhibited high selectivity towards 1,3-PD detection and allowed moderate sample throughput (up to 12 h-1) when integrated into a flow system. This system was used to monitor the concentration of 1,3-PD during a real bioprocess. Results from biosensor assays of 1,3-PD in bioprocess samples taken throughout the fermentation were in a very good agreement with results obtained from reference HPLC assays (R2=0.999).
Collapse
Affiliation(s)
- Jaroslav Katrlík
- Department of Pharmaceutical Analysis and Nuclear Pharmacy, Faculty of Pharmacy, Comenius University, Odbojárov 10, 832 32, Bratislava, Slovakia.
| | | | | | | | | | | | | | | |
Collapse
|