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Soltabayeva A, Kurmanbayeva A, Bekturova A, Oshanova D, Nurbekova Z, Srivastava S, Standing D, Zdunek-Zastocka E, Sagi M. Endogenous ureides are employed as a carbon source in Arabidopsis plants exposed to carbon starvation conditions. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2024; 344:112108. [PMID: 38705480 DOI: 10.1016/j.plantsci.2024.112108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 04/01/2024] [Accepted: 04/23/2024] [Indexed: 05/07/2024]
Abstract
Ureides, the degraded products of purine catabolism in Arabidopsis, have been shown to act as antioxidant and nitrogen sources. Herein we elucidate purine degraded metabolites as a carbon source using the Arabidopsis Atxdh1, Ataln, and Ataah knockout (KO) mutants vis-à-vis wild-type (WT) plants. Plants were grown under short-day conditions on agar plates containing half-strength MS medium with or without 1% sucrose. Notably, the absence of sucrose led to diminished biomass accumulation in both shoot and root tissues of the Atxdh1, Ataln, and Ataah mutants, while no such effect was observed in WT plants. Moreover, the application of sucrose resulted in a reduction of purine degradation metabolite levels, specifically xanthine and allantoin, predominantly within the roots of WT plants. Remarkably, an increase in proteins associated with the purine degradation pathway was observed in WT plants in the presence of sucrose. Lower glyoxylate levels in the roots but not in the shoot of the Atxdh1 mutant in comparison to WT, were observed under sucrose limitation, and improved by sucrose application in root, indicating that purine degradation provided glyoxylate in the root. Furthermore, the deficit of purine-degraded metabolites in the roots of mutants subjected to carbon starvation was partially mitigated through allantoin application. Collectively, these findings signify that under conditions of sucrose limitation and short-day growth, purines are primarily remobilized within the root system to augment the availability of ureides, serving as an additional carbon (as well as nitrogen) source to support plant growth.
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Affiliation(s)
- Aigerim Soltabayeva
- Biology Department, School of Science and Humanities, Nazarbayev University, Astana Z05H0P9, Kazakhstan
| | - Assylay Kurmanbayeva
- Department of Biotechnology and Microbiology, L.N. Gumilyov Eurasian National University, Astana 010000, Kazakhstan
| | - Aizat Bekturova
- The Albert Katz International School for Desert Studies, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, 8499000, Israel
| | - Dinara Oshanova
- The Albert Katz International School for Desert Studies, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, 8499000, Israel
| | - Zhadyrassyn Nurbekova
- The Albert Katz International School for Desert Studies, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, 8499000, Israel
| | - Sudhakar Srivastava
- Jacob Blaustein Center for Scientific Cooperation, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, 8499000, Israel
| | - Dominic Standing
- The Albert Katz Department of Dryland Biotechnologies, French Associates Institute for Agriculture and Biotechnology of Dryland, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, 8499000, Israel
| | - Edyta Zdunek-Zastocka
- Warsaw Univ Life Sci, Inst Biol, Dept Biochem & Microbiol, SGGW, Nowoursynowska 159, Warsaw PL-02776, Poland
| | - Moshe Sagi
- The Albert Katz Department of Dryland Biotechnologies, French Associates Institute for Agriculture and Biotechnology of Dryland, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, 8499000, Israel; Katif Research Center for Development of Coastal Deserts, Netivot 87710, Israel.
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Temraleeva AD, Portnaya EA. Morphological and Molecular Genetic Analyses of the Genus Vischeria (Eustigmatophyceae, Ochrophyta) in the Algal Collection of Soil Science Institute. DOKLADY BIOLOGICAL SCIENCES : PROCEEDINGS OF THE ACADEMY OF SCIENCES OF THE USSR, BIOLOGICAL SCIENCES SECTIONS 2023; 508:20-31. [PMID: 37186045 DOI: 10.1134/s0012496622700132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Revised: 08/17/2022] [Accepted: 08/20/2022] [Indexed: 05/17/2023]
Abstract
Four soil eustigmatophyte algal strains isolated from gray forest soils in Moscow and Tula regions of Russia and deposited in the Algal Collection of Soil Science Institute (ACSSI) were examined by morphological and molecular genetic methods. The strains were assigned to the genus Vischeria on evidence of 18S rRNA gene and ITS2 phylogeny. The strains were morphologically similar to V. magna. However, only one of them, ACSSI 026, clustered with the authentic strain SAG 2554, while the other strains formed a separate independent group. The taxonomy of the genus is problematic because its phylogenetic tree based on the 18S rRNA gene and ITS2 is unresolved, the variable regions V4-V5 and V8-V9 of the 18S rRNA gene are noninformative, and the compensatory base change (CBC) concept fails to work (the concept states that closely related species are distinct if even a single CBC occurs in conserved secondary structure regions of ITS2). The concept of species is presumably possible to develop for Eustigmatophyceae and the genus Vischeria in particular when a greater number of eustigmatophyte algal strains are isolated from various biotopes; plastid genes are used or the total plastid genome is deeply sequenced; and ultrastructural, physiological, and biochemical characteristics are studied in more detail.
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Affiliation(s)
- A D Temraleeva
- Institute of Physicochemical and Biological Problems of Soil Sciences, Pushchino Center of Biological Research, Russian Academy of Sciences, Pushchino, Russia.
| | - E A Portnaya
- Institute of Physicochemical and Biological Problems of Soil Sciences, Pushchino Center of Biological Research, Russian Academy of Sciences, Pushchino, Russia
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Xu Y. Biochemistry and Biotechnology of Lipid Accumulation in the Microalga Nannochloropsis oceanica. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2022; 70:11500-11509. [PMID: 36083864 DOI: 10.1021/acs.jafc.2c05309] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Oils are among the most important agricultural commodities and have wide applications in food/nutrition, biofuels, and oleochemicals. The oleaginous microalga Nannochloropsis oceanica can produce large amounts of oils and the high-value ω-3 eicosapentaenoic acid, which represents a promising resource for oil production targeting biodiesel, nutraceutical, and aquaculture industries. In recent years, with the availability of omics databases and the development of genetic tools, N. oceanica has been extensively investigated as a model photosynthetic organism for studying lipid metabolism and as a green cellular factory to produce lipids for industrial applications. This review summarizes the current knowledge on the lipid composition and biosynthetic pathways of N. oceanica and reviews the recent advances in metabolic engineering of lipid production in this microalga.
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Affiliation(s)
- Yang Xu
- Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada
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Sousa S, Freitas AC, Gomes AM, Carvalho AP. Modulated stress to balance Nannochloropsis oculata growth and eicosapentaenoic acid production. Appl Microbiol Biotechnol 2022; 106:4017-4027. [PMID: 35599259 DOI: 10.1007/s00253-022-11968-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Revised: 05/05/2022] [Accepted: 05/07/2022] [Indexed: 11/30/2022]
Abstract
Two environmental parameters, temperature and light intensity, were independently used as stress modulators to enhance eicosapentaenoic acid (EPA) production by the microalga Nannochloropsis oculata, without hindering biomass production. A sinusoidal approach was used, as environmental conditions were alternated between optimum and stress status in multi-day cycles. Low temperatures (5 and 10 °C) and light intensities (30 and 50 μmol photons/m2/s) were tested. Results revealed that the modulated stress approach used was able to avoid decreases in biomass production. Temperature stress (10 °C) presented the highest impact, increasing EPA content to 12.8 mgEPA/L, 158% more than the amount obtained in optimum (non-modulated) growth conditions at that point in time, while the lower light intensity stress was able to increase to 126% more. It is important to point out that in both cases increases in EPA amounts resulted from increased content in each individual cell and not just from increased biomass contents. KEY POINTS: • Temperature stress (10 °C) presented the highest impact increasing EPA content 158% • Lower light intensity stress was able to increase EPA to 126% more • EPA increased in individual cell contents simultaneous with biomass increase.
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Affiliation(s)
- Sérgio Sousa
- Universidade Católica Portuguesa, CBQF - Centro de Biotecnologia E Química Fina - Laboratório Associado, Escola Superior de Biotecnologia, Rua Diogo Botelho 1327, 4169-005, Porto, Portugal.,REQUIMTE/LAQV, Instituto Superior de Engenharia, Instituto Politécnico Do Porto, Rua Dr. António Bernardino de Almeida, 431, 4200-072, Porto, Portugal
| | - Ana C Freitas
- Universidade Católica Portuguesa, CBQF - Centro de Biotecnologia E Química Fina - Laboratório Associado, Escola Superior de Biotecnologia, Rua Diogo Botelho 1327, 4169-005, Porto, Portugal
| | - Ana M Gomes
- Universidade Católica Portuguesa, CBQF - Centro de Biotecnologia E Química Fina - Laboratório Associado, Escola Superior de Biotecnologia, Rua Diogo Botelho 1327, 4169-005, Porto, Portugal.
| | - Ana P Carvalho
- Universidade Católica Portuguesa, CBQF - Centro de Biotecnologia E Química Fina - Laboratório Associado, Escola Superior de Biotecnologia, Rua Diogo Botelho 1327, 4169-005, Porto, Portugal.,REQUIMTE/LAQV, Instituto Superior de Engenharia, Instituto Politécnico Do Porto, Rua Dr. António Bernardino de Almeida, 431, 4200-072, Porto, Portugal
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Seawater with Added Monosodium Glutamate Residue (MSGR) Is a Promising Medium for the Cultivation of Two Commercial Marine Microalgae. WATER 2022. [DOI: 10.3390/w14060975] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/10/2022]
Abstract
Phaeodactylum tricornutum and Nannochloropsis oceanica, with their satisfactory performance in accumulating lipids and other high-value products, have been successfully used for commercial production in recent years. However, costly chemicals in culture media greatly increase the price of the resulting bioproducts. To control the cultivation cost, this paper assessed the potential of seawater supplemented with monosodium glutamate residue wastewater at a ratio of 1/500 (S-MSGR) to serve as a growing medium for these two marine species. Compared with the standard chemical culture medium, Erdschreiber’s medium (EM), both the algal growth and metabolite accumulation of P. tricornutum and N. oceanica were greatly promoted in S-MSGR. The maximum biomass concentrations of P. tricornutum and N. oceanica reached 0.93 and 0.36 g/L, which were, respectively, 1.5 and 1.9 times higher than those in EM medium. For lipid accumulation, P. tricornutum exhibited an excellent lipid productivity of 22.9 mg/L/day in S-MSGR, a 64% increase compared to EM medium. Furthermore, the average yield coefficients indicated good performance of P. tricornutum and N. oceanica in transferring the nitrogen in S-MSGR to the biomass, at 74.8 and 174.8 mg/g of nitrogen. In addition, compared with EM, the costs of the medium for lipid production of P. tricornutum and N. oceanica cultured in S-MSGR were USD 2.3 and 5.8/(kg lipid), which saved 96.9% and 97.6%, respectively. Therefore, this paper demonstrates that S-MSGR is a suitable nutrient resource for P. tricornutum and N. oceanica, and it has a great potential to cut the cultivation cost during real commercial production.
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Wan Afifudeen CL, Aziz A, Wong LL, Takahashi K, Toda T, Abd Wahid ME, Cha TS. Transcriptome-wide study in the green microalga Messastrum gracile SE-MC4 identifies prominent roles of photosynthetic integral membrane protein genes during exponential growth stage. PHYTOCHEMISTRY 2021; 192:112936. [PMID: 34509143 DOI: 10.1016/j.phytochem.2021.112936] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2021] [Revised: 08/26/2021] [Accepted: 08/29/2021] [Indexed: 06/13/2023]
Abstract
The non-model microalga Messastrum gracile SE-MC4 is a potential species for biodiesel production. However, low biomass productivity hinders it from passing the life cycle assessment for biodiesel production. Therefore, the current study was aimed at uncovering the differences in the transcriptome profiles of the microalgae at early exponential and early stationary growth phases and dissecting the roles of specific differential expressed genes (DEGs) involved in cell division during M. gracile cultivation. The transcriptome analysis revealed that the photosynthetic integral membrane protein genes such as photosynthetic antenna protein were severely down-regulated during the stationary growth phase. In addition, the signaling pathways involving transcription, glyoxylate metabolism and carbon metabolism were also down-regulated during stationary growth phase. Current findings suggested that the coordination between photosynthetic integral membrane protein genes, signaling through transcription and carbon metabolism classified as prominent strategies during exponential growth stage. These findings can be applied in genetic improvement of M. gracile for biodiesel application.
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Affiliation(s)
- C L Wan Afifudeen
- Satreps-Cosmos Laboratory, Central Laboratory Complex, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia; Institute of Marine Biotechnology, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia.
| | - Ahmad Aziz
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia; Satreps-Cosmos Laboratory, Central Laboratory Complex, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia.
| | - Li Lian Wong
- Satreps-Cosmos Laboratory, Central Laboratory Complex, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia; Institute of Marine Biotechnology, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia.
| | - Kazutaka Takahashi
- Department of Aquatic Bioscience, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan.
| | - Tatsuki Toda
- Faculty of Science and Engineering, Soka University, 1-236 Tangi-cho, Hachioji, Tokyo, 192-8577, Japan.
| | - Mohd Effendy Abd Wahid
- Satreps-Cosmos Laboratory, Central Laboratory Complex, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia; Faculty of Fisheries and Food Science, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia.
| | - Thye San Cha
- Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia; Satreps-Cosmos Laboratory, Central Laboratory Complex, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia.
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Ben-Sheleg A, Khozin-Godberg I, Yaakov B, Vonshak A. Characterization of Nannochloropsis oceanica Rose Bengal Mutants Sheds Light on Acclimation Mechanisms to High Light When Grown in Low Temperature. PLANT & CELL PHYSIOLOGY 2021; 62:1478-1493. [PMID: 34180533 PMCID: PMC8600018 DOI: 10.1093/pcp/pcab094] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2021] [Revised: 06/23/2021] [Accepted: 06/27/2021] [Indexed: 06/13/2023]
Abstract
A barrier to realizing Nannochloropsis oceanica's potential for omega-3 eicosapentaenoic acid (EPA) production is the disparity between conditions that are optimal for growth and those that are optimal for EPA biomass content. A case in point is temperature: higher content of polyunsaturated fatty acid, and especially EPA, is observed in low-temperature (LT) environments, where growth rates are often inhibited. We hypothesized that mutant strains of N. oceanica resistant to the singlet-oxygen photosensitizer Rose Bengal (RB) would withstand the oxidative stress conditions that prevail in the combined stressful environment of high light (HL; 250 μmol photons m-2 s-1) and LT (18°C). This growth environment caused the wild-type (WT) strain to experience a spike in lipid peroxidation and an inability to proliferate, whereas growth and homeostatic reactive oxygen species levels were observed in the mutant strains. We suggest that the mutant strains' success in this environment can be attributed to their truncated photosystem II antennas and their increased ability to diffuse energy in those antennas as heat (non-photosynthetic quenching). As a result, the mutant strains produced upward of four times more EPA than the WT strain in this HL-LT environment. The major plastidial lipid monogalactosyldiacylglycerol was a likely target for oxidative damage, contributing to the photosynthetic inhibition of the WT strain. A mutation in the NO10G01010.1 gene, causing a subunit of the 2-oxoisovalerate dehydrogenase E1 protein to become non-functional, was determined to be the likely source of tolerance in the RB113 mutant strain.
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Affiliation(s)
- Avraham Ben-Sheleg
- Microalgal Biotechnology Laboratory, The French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institute for Desert Research, Ben-Gurion University of the Negev, Sede-Boqer Campus, Midreshet Ben-Gurion 8499000, Israel
| | - Inna Khozin-Godberg
- Microalgal Biotechnology Laboratory, The French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institute for Desert Research, Ben-Gurion University of the Negev, Sede-Boqer Campus, Midreshet Ben-Gurion 8499000, Israel
| | - Beery Yaakov
- Microalgal Biotechnology Laboratory, The French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institute for Desert Research, Ben-Gurion University of the Negev, Sede-Boqer Campus, Midreshet Ben-Gurion 8499000, Israel
| | - Avigad Vonshak
- Microalgal Biotechnology Laboratory, The French Associates Institute for Agriculture and Biotechnology of Drylands, Jacob Blaustein Institute for Desert Research, Ben-Gurion University of the Negev, Sede-Boqer Campus, Midreshet Ben-Gurion 8499000, Israel
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Insights into the physiology of Chlorella vulgaris cultivated in sweet sorghum bagasse hydrolysate for sustainable algal biomass and lipid production. Sci Rep 2021; 11:6779. [PMID: 33762646 PMCID: PMC7991646 DOI: 10.1038/s41598-021-86372-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2020] [Accepted: 03/15/2021] [Indexed: 02/06/2023] Open
Abstract
Supplementing cultivation media with exogenous carbon sources enhances biomass and lipid production in microalgae. Utilization of renewable organic carbon from agricultural residues can potentially reduce the cost of algae cultivation, while enhancing sustainability. In the present investigation a medium was developed from sweet sorghum bagasse for cultivation of Chlorella under mixotrophic conditions. Using response surface methodology, the optimal values of critical process parameters were determined, namely inoculum cell density (O.D.750) of 0.786, SSB hydrolysate content of the medium 25% v/v, and zero medium salinity, to achieve maximum lipid productivity of 120 mg/L/d. Enhanced biomass (3.44 g/L) and lipid content (40% of dry cell weight) were observed when the alga was cultivated in SSB hydrolysate under mixotrophic conditions compared to heterotrophic and photoautotrophic conditions. A time course investigation revealed distinct physiological responses in terms of cellular growth and biochemical composition of C. vulgaris cultivated in the various trophic modes. The determined carbohydrate and lipid profiles indicate that sugar addition to the cultivation medium boosts neutral lipid synthesis compared to structural lipids, suggesting that carbon flux is channeled towards triacylglycerol synthesis in the cells. Furthermore, the fatty acid profile of lipids extracted from mixotrophically grown cultures contained more saturated and monosaturated fatty acids, which are suitable for biofuel manufacturing. Scale-up studies in a photobioreactor using SSB hydrolysate achieved a biomass concentration of 2.83 g/L consisting of 34% lipids and 26% carbohydrates. These results confirmed that SSB hydrolysate is a promising feedstock for mixotrophic cultivation of Chlorella and synthesis of algal bioproducts and biofuels.
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Sinetova MA, Sidorov RA, Medvedeva AA, Starikov AY, Markelova AG, Allakhverdiev SI, Los DA. Effect of salt stress on physiological parameters of microalgae Vischeria punctata strain IPPAS H-242, a superproducer of eicosapentaenoic acid. J Biotechnol 2021; 331:63-73. [PMID: 33727081 DOI: 10.1016/j.jbiotec.2021.03.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2020] [Revised: 02/17/2021] [Accepted: 03/01/2021] [Indexed: 01/31/2023]
Abstract
The strain IPPAS H-242 is an eustigmatophycean alga with good growth characteristics and high content of the long chain polyunsaturated eicosapentaenoic fatty acid (EPA) - a very-long-chain fatty acid with high nutraceutical value. In this study, based on 18S rRNA gene and ITS1-5.8S-ITS2 sequences the strain IPPAS H-242 was identified as an authentic strain of Vischeria punctata. The effect of salt stress (0.5 M NaCl) on growth, cell morphology, ultrastructure, and biochemical composition with the emphasis on the fatty acid (FA) profile was investigated in batch cultures. Under salt stress, biomass accumulation and cell division were severely inhibited; cells were bigger, with higher chloroplast volume and numerous mitochondria, they had more proteins (73 % from the initial concentration as compared to 23 % in control) and their lipids had higher EPA proportion (13.6 % of total FA as compared to 6.4 % of total FA in control). In salt-stressed cells, thylakoid organization and photosynthetic activity were impaired, and D1 protein content decreased to trace amounts. In spite of an increase in EPA proportion in total FA, salt stress causes a decrease in total EPA productivity (49 mg/L as compared to 130 mg/L in control).
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Affiliation(s)
- Maria A Sinetova
- K.A. Timiryazev Institute of Plant Physiology RAS, Botanicheskaya str., 35, Moscow, 127276, Russia.
| | - Roman A Sidorov
- K.A. Timiryazev Institute of Plant Physiology RAS, Botanicheskaya str., 35, Moscow, 127276, Russia
| | - Anastasiya A Medvedeva
- K.A. Timiryazev Institute of Plant Physiology RAS, Botanicheskaya str., 35, Moscow, 127276, Russia
| | - Alexander Y Starikov
- K.A. Timiryazev Institute of Plant Physiology RAS, Botanicheskaya str., 35, Moscow, 127276, Russia
| | - Alexandra G Markelova
- K.A. Timiryazev Institute of Plant Physiology RAS, Botanicheskaya str., 35, Moscow, 127276, Russia
| | - Suleyman I Allakhverdiev
- K.A. Timiryazev Institute of Plant Physiology RAS, Botanicheskaya str., 35, Moscow, 127276, Russia.
| | - Dmitry A Los
- K.A. Timiryazev Institute of Plant Physiology RAS, Botanicheskaya str., 35, Moscow, 127276, Russia
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Oliveira CYB, D'Alessandro EB, Antoniosi Filho NR, Lopes RG, Derner RB. Synergistic effect of growth conditions and organic carbon sources for improving biomass production and biodiesel quality by the microalga Choricystis minor var. minor. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 759:143476. [PMID: 33218810 DOI: 10.1016/j.scitotenv.2020.143476] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2020] [Revised: 10/22/2020] [Accepted: 10/24/2020] [Indexed: 06/11/2023]
Abstract
In the search for microalgae species with potential for biodiesel production, Choricystis minor var. minor has been seen as a promising source of biomass due to its high lipid content and the satisfactory characteristics of its fatty acid methyl esters (FAMEs). For this reason, the objective of this study was to investigate the synergistic effect of growth conditions and organic carbon sources on cultivation of this microalga. To do so, experimental cultivations were conducted in photoautotrophic, heterotrophic and mixotrophic metabolisms using glucose, fructose, glycerol or sucrose - in growth conditions that use organic carbon. Thus, growth parameters of the cultures were evaluated and at the end of the cultivations, FAMEs yield and profile were determined by gas chromatography, the efficiency of carbon conversion into biomass was evaluated and a microbial analysis was conducted. Regarding growth conditions, the findings have confirmed that, regardless of the organic carbon source used, the heterotrophic and mixotrophic metabolisms can present advantages over the photoautotrophic one. In addition, biomass production was higher with the use of glucose than with other organic carbon sources, regardless of growth condition (heterotrophic or mixotrophic). Moreover, cultivations with the addition of CO2 have converted carbon into biomass less efficiently. On the other hand, photoautotrophic cultures presented the lowest bacterial load. In comparison to photoautotrophic and mixotrophic, heterotrophic cultures have led to lower FAMEs content and higher yields of unsaturated fatty acids. The most satisfactory FAMEs profile for biodiesel production was obtained with mixotrophic growth using fructose.
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Affiliation(s)
- Carlos Yure B Oliveira
- Universidade Federal Rural de Pernambuco, Departamento de Pesca e Aquicultura, Laboratório de Produção de Alimento Vivo, Recife, Brazil; Universidade Federal de Santa Catarina, Departamento de Aquicultura, Laboratório de Cultivo de Algas, Florianópolis, Brazil.
| | - Emmanuel B D'Alessandro
- Universidade Federal de Goiás, Departamento de Química, Laboratório de Métodos de Extração e Separação, Goiânia, Brazil
| | - Nelson R Antoniosi Filho
- Universidade Federal de Goiás, Departamento de Química, Laboratório de Métodos de Extração e Separação, Goiânia, Brazil
| | - Rafael G Lopes
- Universidade Federal de Santa Catarina, Departamento de Aquicultura, Laboratório de Cultivo de Algas, Florianópolis, Brazil
| | - Roberto B Derner
- Universidade Federal de Santa Catarina, Departamento de Aquicultura, Laboratório de Cultivo de Algas, Florianópolis, Brazil
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Kumar G, Shekh A, Jakhu S, Sharma Y, Kapoor R, Sharma TR. Bioengineering of Microalgae: Recent Advances, Perspectives, and Regulatory Challenges for Industrial Application. Front Bioeng Biotechnol 2020; 8:914. [PMID: 33014997 PMCID: PMC7494788 DOI: 10.3389/fbioe.2020.00914] [Citation(s) in RCA: 84] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2020] [Accepted: 07/15/2020] [Indexed: 01/14/2023] Open
Abstract
Microalgae, due to their complex metabolic capacity, are being continuously explored for nutraceuticals, pharmaceuticals, and other industrially important bioactives. However, suboptimal yield and productivity of the bioactive of interest in local and robust wild-type strains are of perennial concerns for their industrial applications. To overcome such limitations, strain improvement through genetic engineering could play a decisive role. Though the advanced tools for genetic engineering have emerged at a greater pace, they still remain underused for microalgae as compared to other microorganisms. Pertaining to this, we reviewed the progress made so far in the development of molecular tools and techniques, and their deployment for microalgae strain improvement through genetic engineering. The recent availability of genome sequences and other omics datasets form diverse microalgae species have remarkable potential to guide strategic momentum in microalgae strain improvement program. This review focuses on the recent and significant improvements in the omics resources, mutant libraries, and high throughput screening methodologies helpful to augment research in the model and non-model microalgae. Authors have also summarized the case studies on genetically engineered microalgae and highlight the opportunities and challenges that are emerging from the current progress in the application of genome-editing to facilitate microalgal strain improvement. Toward the end, the regulatory and biosafety issues in the use of genetically engineered microalgae in commercial applications are described.
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Affiliation(s)
- Gulshan Kumar
- Agricultural Biotechnology Division, National Agri-Food Biotechnology Institute (NABI), Sahibzada Ajit Singh Nagar, India
| | - Ajam Shekh
- Plant Cell Biotechnology Department, CSIR-Central Food Technological Research Institute (CFTRI), Mysuru, India
| | - Sunaina Jakhu
- Agricultural Biotechnology Division, National Agri-Food Biotechnology Institute (NABI), Sahibzada Ajit Singh Nagar, India
| | - Yogesh Sharma
- Agricultural Biotechnology Division, National Agri-Food Biotechnology Institute (NABI), Sahibzada Ajit Singh Nagar, India
| | - Ritu Kapoor
- Agricultural Biotechnology Division, National Agri-Food Biotechnology Institute (NABI), Sahibzada Ajit Singh Nagar, India
| | - Tilak Raj Sharma
- Division of Crop Science, Indian Council of Agricultural Research, New Delhi, India
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Amaral R, Fawley KP, Němcová Y, Ševčíková T, Lukešová A, Fawley MW, Santos LMA, Eliáš M. Toward Modern Classification of Eustigmatophytes, Including the Description of Neomonodaceae Fam. Nov. and Three New Genera 1. JOURNAL OF PHYCOLOGY 2020; 56:630-648. [PMID: 32068883 PMCID: PMC7987219 DOI: 10.1111/jpy.12980] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2019] [Accepted: 12/04/2019] [Indexed: 05/09/2023]
Abstract
The class Eustigmatophyceae includes mostly coccoid, freshwater algae, although some genera are common in terrestrial habitats and two are primarily marine. The formal classification of the class, developed decades ago, does not fit the diversity and phylogeny of the group as presently known and is in urgent need of revision. This study concerns a clade informally known as the Pseudellipsoidion group of the order Eustigmatales, which was initially known to comprise seven strains with oval to ellipsoidal cells, some bearing a stipe. We examined those strains as well as 10 new ones and obtained 18S rDNA and rbcL gene sequences. The results from phylogenetic analyses of the sequence data were integrated with morphological data of vegetative and motile cells. Monophyly of the Pseudellipsoidion group is supported in both 18S rDNA and rbcL trees. The group is formalized as the new family Neomonodaceae comprising, in addition to Pseudellipsoidion, three newly erected genera. By establishing Neomonodus gen. nov. (with type species Neomonodus ovalis comb. nov.), we finally resolve the intricate taxonomic history of a species originally described as Monodus ovalis and later moved to the genera Characiopsis and Pseudocharaciopsis. Characiopsiella gen. nov. (with the type species Characiopsiella minima comb. nov.) and Munda gen. nov. (with the type species Munda aquilonaris) are established to accommodate additional representatives of the polyphyletic genus Characiopsis. A morphological feature common to all examined Neomonodaceae is the absence of a pyrenoid in the chloroplasts, which discriminates them from other morphologically similar yet unrelated eustigmatophytes (including other Characiopsis-like species).
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Affiliation(s)
- Raquel Amaral
- Authors for correspondence: Raquel Amaral – , Tel.: +351 962367485; Marek Eliáš – , Tel.: +420 597 092 329
| | - Karen P. Fawley
- Division of Science and Mathematics, University of the Ozarks, Clarksville, Arkansas, 72830, USA
| | - Yvonne Němcová
- Department of Botany, Faculty of Science, Charles University, Benátská 2, 128 01, Prague 2, Czech Republic
| | - Tereza Ševčíková
- Department of Biology and Ecology, Faculty of Science, University of Ostrava, Chittussiho 10, 710 00 Ostrava, Czech Republic
| | - Alena Lukešová
- Institute of Soil Biology, Biology Centre, Czech Academy of Sciences, Na Sádkách 7, 370 05 České Budějovice, Czech Republic
| | - Marvin W. Fawley
- Division of Science and Mathematics, University of the Ozarks, Clarksville, Arkansas, 72830, USA
| | - Lília M. A. Santos
- Coimbra Collection of Algae (ACOI), Department of Life Sciences, University of Coimbra, 3000-456, Coimbra, Portugal
| | - Marek Eliáš
- Authors for correspondence: Raquel Amaral – , Tel.: +351 962367485; Marek Eliáš – , Tel.: +420 597 092 329
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Kugler A, Kumari P, Kokabi K, Itkin M, Malitsky S, Khozin-Goldberg I. Resilience to Freezing in the Vegetative Cells of the Microalga Lobosphaera incisa (Trebouxiophyceae, Chlorophyta). JOURNAL OF PHYCOLOGY 2020; 56:334-345. [PMID: 31715644 DOI: 10.1111/jpy.12948] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2019] [Accepted: 10/28/2019] [Indexed: 06/10/2023]
Abstract
The chlorophyte microalga Lobosphaera incisa was isolated from the snowy slopes of Mt. Tateyama in Japan. This microalga stores exceptionally high amounts of the omega-6 LC-PUFA arachidonic acid in triacylglycerols, and therefore represents a potent photosynthetic source for this essential LC-PUFA. Assuming that freezing tolerance may play a role in adaptation of L. incisa to specific ecological niches, we examined the capability of L. incisa to tolerate extreme sub-zero temperatures. We report here, that the vegetative cells of L. incisa survived freezing at -20°C and -80°C (over 1 month), without cryoprotective agents or prior treatments. Cells successfully recovered upon thawing and proliferated under optimal growth conditions (25°C). However, cells frozen at -80°C showed better recovery and lower cellular ROS generation upon thawing, compared to those preserved at -20°C. Photosynthetic yield of PSII, estimated by Fv /Fm , temporarily decreased at day 1 post freezing and resumed to the original level at day 3. Interestingly, the thawed algal cultures produced a higher level of chlorophylls, exceeding the control culture. The polar metabolome of the vegetative cells comprised a range of compatible solutes, dominated by glutamate, sucrose, and proline. We posit that the presence of endogenous cryoprotectants, a rigid multilayer cell wall, the high LC-PUFA content in membrane lipids, and putative cold-responsive proteins may contribute to the retention of functionality upon recovery from the frozen state, and therefore for the survival under cryospheric conditions. From the applied perspective, this beneficial property holds promise for the cryopreservation of starter cultures for research and commercial purposes.
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Affiliation(s)
- Amit Kugler
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, 8499000, Israel
| | - Puja Kumari
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, 8499000, Israel
| | - Kamilya Kokabi
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, 8499000, Israel
| | - Maxim Itkin
- Metabolic Profiling Unit, Life Science Core Facilities, Weizmann Institute of Science, Rehovot, Israel
| | - Sergey Malitsky
- Metabolic Profiling Unit, Life Science Core Facilities, Weizmann Institute of Science, Rehovot, Israel
| | - Inna Khozin-Goldberg
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, 8499000, Israel
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15
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Wang L, Huang X, Laserna AKC, Li SFY. Metabolomics reveals that tris(1,3-dichloro-2-propyl)phosphate (TDCPP) causes disruption of membrane lipids in microalga Scenedesmus obliquus. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 708:134498. [PMID: 31796289 DOI: 10.1016/j.scitotenv.2019.134498] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2019] [Revised: 09/11/2019] [Accepted: 09/15/2019] [Indexed: 06/10/2023]
Abstract
Tris(1,3-dichloro-2-propyl)phosphate (TDCPP) is one of the most widely used organophosphate ester flame retardants. The presence of TDCPP in surface waters and aquatic organisms have been reported worldwide, yet the ecological risk of TDCPP on microalgae is rarely studied. We investigated the biotransformation of TDCPP and its toxicity on the microalga Scenedesmus obliquus using an untargeted metabolomics approach. Exposure to TDCPP resulted in a dose-response decrease of micoalgal biomass. In the presence of microalgae, TDCPP concentration in the media decreased by 25.3-40.6% after 5 days. TDCPP metabolites were identified in the media including hydrolysis and hydroxyl-substituted dechlorination products. A dose-response separation of metabolic profiles of microalgae was observed, with effect seen at the lowest concentration of 10 µg/L tested, which is slightly higher than environmentally relevant concentrations. Differentiated metabolites identified include 52 lipids and 6 polar metabolites. Analysis of altered lipid pathways suggests that microalgal cells reinforce thylakoid membranes (function to protect photosynthesis) by compromising the integrity of plasma membrane (function to protect cellular substances) and extraplastidial cellular membranes. Changes in the polar metabolites might indicate osmotic stress and improved NO signaling after TDCPP exposure. Consistent with perturbation of membrane lipids, further experiment confirmed that exposure to 10 mg/L TDCPP resulted in significant (p < 0.01) plasma membrane damage. This study indicates biotransformation and the membrane damage toxicity mechanism of TDCPP on S. obliquus, demonstrating the usefulness of metabolomics for the toxicity mechanism elucidation of emerging pollutants.
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Affiliation(s)
- Lei Wang
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore; MOE Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Xulei Huang
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore
| | | | - Sam Fong Yau Li
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore; NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411, Singapore.
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16
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Harwood JL. Algae: Critical Sources of Very Long-Chain Polyunsaturated Fatty Acids. Biomolecules 2019; 9:biom9110708. [PMID: 31698772 PMCID: PMC6920940 DOI: 10.3390/biom9110708] [Citation(s) in RCA: 53] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2019] [Revised: 10/29/2019] [Accepted: 11/04/2019] [Indexed: 01/01/2023] Open
Abstract
Polyunsaturated fatty acids (PUFAs), which are divided into n-3 and n-6 classes, are essential for good health in humans and many animals. They are metabolised to lipid mediators, such as eicosanoids, resolvins and protectins. Increasing interest has been paid to the 20 or 22 carbon very long chain PUFAs, since these compounds can be used to form lipid mediators and, thus, avoid inefficient formation of dietary plant PUFAs. The ultimate sources of very long chain PUFAs are algae, which are consumed by fish and then by humans. In this review, I describe the biosynthesis of very long chain PUFAs by algae and how this synthesis can be manipulated for commercial purposes. Ultimately, the production of algal oils is critical for ecosystems worldwide, as well as for human dietary lipids.
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Affiliation(s)
- John L Harwood
- School of Biosciences, Cardiff University, Cardiff CF10 3AX, UK
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17
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Pandeirada CO, Maricato É, Ferreira SS, Correia VG, Pinheiro BA, Evtuguin DV, Palma AS, Correia A, Vilanova M, Coimbra MA, Nunes C. Structural analysis and potential immunostimulatory activity of Nannochloropsis oculata polysaccharides. Carbohydr Polym 2019; 222:114962. [DOI: 10.1016/j.carbpol.2019.06.001] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Revised: 05/17/2019] [Accepted: 06/03/2019] [Indexed: 11/27/2022]
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18
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Li-Beisson Y, Thelen JJ, Fedosejevs E, Harwood JL. The lipid biochemistry of eukaryotic algae. Prog Lipid Res 2019; 74:31-68. [PMID: 30703388 DOI: 10.1016/j.plipres.2019.01.003] [Citation(s) in RCA: 162] [Impact Index Per Article: 32.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2018] [Revised: 01/22/2019] [Accepted: 01/23/2019] [Indexed: 02/06/2023]
Abstract
Algal lipid metabolism fascinates both scientists and entrepreneurs due to the large diversity of fatty acyl structures that algae produce. Algae have therefore long been studied as sources of genes for novel fatty acids; and, due to their superior biomass productivity, algae are also considered a potential feedstock for biofuels. However, a major issue in a commercially viable "algal oil-to-biofuel" industry is the high production cost, because most algal species only produce large amounts of oils after being exposed to stress conditions. Recent studies have therefore focused on the identification of factors involved in TAG metabolism, on the subcellular organization of lipid pathways, and on interactions between organelles. This has been accompanied by the development of genetic/genomic and synthetic biological tools not only for the reference green alga Chlamydomonas reinhardtii but also for Nannochloropsis spp. and Phaeodactylum tricornutum. Advances in our understanding of enzymes and regulatory proteins of acyl lipid biosynthesis and turnover are described herein with a focus on carbon and energetic aspects. We also summarize how changes in environmental factors can impact lipid metabolism and describe present and potential industrial uses of algal lipids.
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Affiliation(s)
- Yonghua Li-Beisson
- Aix-Marseille Univ, CEA, CNRS, BIAM, UMR7265, CEA Cadarache, Saint-Paul-lez Durance F-13108, France.
| | - Jay J Thelen
- Department of Biochemistry, University of Missouri, Christopher S. Bond Life Sciences Center, Columbia, MO 65211, United States.
| | - Eric Fedosejevs
- Department of Biochemistry, University of Missouri, Christopher S. Bond Life Sciences Center, Columbia, MO 65211, United States.
| | - John L Harwood
- School of Biosciences, Cardiff University, Cardiff CF10 3AX, UK.
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19
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Poliner E, Farré EM, Benning C. Advanced genetic tools enable synthetic biology in the oleaginous microalgae Nannochloropsis sp. PLANT CELL REPORTS 2018; 37:1383-1399. [PMID: 29511798 DOI: 10.1007/s00299-018-2270-0] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2017] [Accepted: 02/26/2018] [Indexed: 05/16/2023]
Abstract
Nannochloropsis is a genus of fast-growing microalgae that are regularly used for biotechnology applications. Nannochloropsis species have a high triacylglycerol content and their polar lipids are rich in the omega-3 long-chain polyunsaturated fatty acid, eicosapentaenoic acid. Placed in the heterokont lineage, the Nannochloropsis genus has a complex evolutionary history. Genome sequences are available for several species, and a number of transcriptomic datasets have been produced, making this genus a facile model for comparative genomics. There is a growing interest in Nannochloropsis species as models for the study of microalga lipid metabolism and as a chassis for synthetic biology. Recently, techniques for gene stacking, and targeted gene disruption and repression in the Nannochloropsis genus have been developed. These tools enable gene-specific, mechanistic studies and have already allowed the engineering of improved Nannochloropsis strains with superior growth, or greater bioproduction.
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Affiliation(s)
- Eric Poliner
- Cell and Molecular Biology Program, Michigan State University, East Lansing, MI, USA
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, USA
| | - Eva M Farré
- Department of Plant Biology, Michigan State University, East Lansing, MI, USA
| | - Christoph Benning
- MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, USA.
- Department of Plant Biology, Michigan State University, East Lansing, MI, USA.
- Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, USA.
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20
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Rohit MV, Venkata Mohan S. Quantum Yield and Fatty Acid Profile Variations With Nutritional Mode During Microalgae Cultivation. Front Bioeng Biotechnol 2018; 6:111. [PMID: 30320078 PMCID: PMC6167444 DOI: 10.3389/fbioe.2018.00111] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2018] [Accepted: 07/17/2018] [Indexed: 11/13/2022] Open
Abstract
Microalgae are gaining commercial interests in the areas food, feed and biofuel sector. They have intrinsic ability to harness energy from sunlight and photosynthetically valorize CO2 into various bio-based products viz., triacylglycerols (TAGs), mono/poly-unsaturated fatty acids (MUFA, PUFA), pigments etc. Microalgae have adapted to grow in various nutritional environments due to their metabolic versatility and resilience. Strategic evaluation of newly isolated strain Chlorella sp. from a residential lake was performed. The strain was investigated by varying the nutritional modes to gain insights into biomass and fatty acids production. Maximum biomass (3.59 g/L) was observed in mixotrophic condition followed by heterotrophic (1.58 g/L) and autotrophic condition (0.59 g/L). The maximum lipid yield (670 mg/g DCW) was observed in mixotrophic condition whereas maximum total lipid content (36%) was observed in heterotrophic condition. Significant correlation was noticed between fluorescence parameters measured by OJIP and non-photochemical quenching (NPQ) with the function of nutritional mode variations. Autotrophic condition showed higher photosynthetic activity which was well correlated with high fluorescence intensity as represented by OJIP, NPQ1, and NPQ2 curves. Good balance of saturated fatty acids (SFA) and unsaturated fatty acids was observed in autotrophic mode, whereas polyunsaturated fatty acids (PUFA) and mono unsaturated fatty acid (MUFA) content were relatively higher in mixotrophic and heterotrophic conditions.
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Affiliation(s)
- M. V. Rohit
- Bioengineering and Environmental Sciences Lab, EEFF Centre, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad, India
- Academy for Scientific and Industrial Research (AcSIR), Ghaziabad, India
| | - S. Venkata Mohan
- Bioengineering and Environmental Sciences Lab, EEFF Centre, CSIR-Indian Institute of Chemical Technology (CSIR-IICT), Hyderabad, India
- Academy for Scientific and Industrial Research (AcSIR), Ghaziabad, India
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21
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Grand Challenges in Marine Biotechnology: Overview of Recent EU-Funded Projects. GRAND CHALLENGES IN MARINE BIOTECHNOLOGY 2018. [DOI: 10.1007/978-3-319-69075-9_11] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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22
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Schüler LM, Schulze PS, Pereira H, Barreira L, León R, Varela J. Trends and strategies to enhance triacylglycerols and high-value compounds in microalgae. ALGAL RES 2017. [DOI: 10.1016/j.algal.2017.05.025] [Citation(s) in RCA: 60] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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23
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Abstract
Zeaxanthin is a xanthophyll pigment that is regarded as one of the best carotenoids for the prevention and treatment of degenerative diseases. In the worldwide natural products market, consumers prefer pigments that have been produced from biological sources. In this study, a Dunaliella tertiolecta strain that has 10–15% higher cellular zeaxanthin content than the parent strain (zea1), was obtained by random mutagenesis using ethyl methanesulfonate (EMS) as a mutagen. This mutant, mp3, was grown under various salinities and light intensities to optimize culture conditions for zeaxanthin production. The highest cellular zeaxanthin content was observed at 1.5 M NaCl and 65–85 μmol photons·m−2·s−1, and the highest daily zeaxanthin productivity was observed at 0.6 M NaCl and 140–160 μmol photons·m−2·s−1. The maximal yield of zeaxanthin from mp3 in fed-batch culture was 8 mg·L−1, which was obtained at 0.6 M NaCl and 140–160 μmol photons·m−2·s−1. These results suggest that random mutagenesis with EMS is useful for generating D. tertiolecta strains with increased zeaxanthin content, and also suggest optimal culture conditions for the enhancement of biomass and zeaxanthin production by the zeaxanthin accumulating mutant strains.
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Cañavate JP, Armada I, Hachero-Cruzado I. Polar Lipids Analysis of Cultured Phytoplankton Reveals Significant Inter-taxa Changes, Low Influence of Growth Stage, and Usefulness in Chemotaxonomy. MICROBIAL ECOLOGY 2017; 73:755-774. [PMID: 27837252 DOI: 10.1007/s00248-016-0893-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2016] [Accepted: 10/31/2016] [Indexed: 06/06/2023]
Abstract
The high lipid diversity of microalgae has been used to taxonomically differentiate phytoplankton taxa at the class level. However, important lipids such as phospholipids (PL) and betaine lipids (BL) with potential chemotaxonomy application in phytoplankton ecology have been scarcely studied. The chemotaxonomy value of PL and BL depends on their intraspecific extent of variation as microalgae respond to external changing factors. To determine such effects, lipid class changes occurring at different growth stages in 15 microalgae from ten different classes were analyzed. BL occurred in 14 species and were the less affected lipids by growth stage with diacylglyceryl-hydroxymethyl-N,N,N-trimethyl-b-alanine (DGTA) showing the highest stability. PL were more influenced by growth stage with phosphatidylcholine (PC), phosphatidylglycerol (PG), and phosphatidyletanolamine (PE) declining towards older culture stages in some species. Glycolipids were the more common lipids, and no evident age-related variability pattern could be associated to taxonomic diversity. Selecting BL and PL as descriptor variables optimally distinguished microalgae taxonomic variability at all growth stages. Principal coordinate analysis arranged species through a main tendency from diacylglyceryl-hydroxymethyl-N,N,N-trimethyl-b-alanine (DGCC) containing species (mainly dinoflagellates and haptophytes) to DGTA or PC containing species (mainly cryptophytes). Two diatom classes with similar fatty acid profiles could be distinguished from their respective content in DGTA (Bacillariophyceae) or DGCC (Mediophyceae). In green lineage classes (Trebouxiophyceae, Porphyridophyceae, and Chlorodendrophyceae), PC was a better descriptor than BL. BL and PL explained a higher proportion of microalgae taxonomic variation than did fatty acids and played a complementary role as lipid markers.
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Affiliation(s)
- José Pedro Cañavate
- IFAPA Centro El Toruño, Andalusia Research and Training Institute for Fisheries and Agriculture, 11500-El Puerto de Santa Maria, Cádiz, Spain.
| | - Isabel Armada
- IFAPA Centro El Toruño, Andalusia Research and Training Institute for Fisheries and Agriculture, 11500-El Puerto de Santa Maria, Cádiz, Spain
| | - Ismael Hachero-Cruzado
- IFAPA Centro El Toruño, Andalusia Research and Training Institute for Fisheries and Agriculture, 11500-El Puerto de Santa Maria, Cádiz, Spain
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25
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Savvidou MG, Lymperopoulou TV, Mamma D, Balta-Brouma KP, Sotiroudis TG, Kekos D, Kolisis FN. A study on the combined effects of carbon and nitrogen source on high added value products synthesis by Nannochloropsis oceanica CCMP1779 using response surface methodology. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2017. [DOI: 10.1016/j.bcab.2017.04.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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26
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Li Y, Lou Y, Mu T, Xu J, Zhou C, Yan X. Simultaneous structural identification of diacylglyceryl-N-trimethylhomoserine (DGTS) and diacylglycerylhydroxymethyl-N,N,N-trimethyl-β-alanine (DGTA) in microalgae using dual Li + /H + adduct ion mode by ultra-performance liquid chromatography/quadrupole time-of-flight mass spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2017; 31:457-468. [PMID: 28040883 DOI: 10.1002/rcm.7818] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2016] [Revised: 12/26/2016] [Accepted: 12/29/2016] [Indexed: 06/06/2023]
Abstract
RATIONALE Diacylgycerol-N-trimethylhomoserine (DGTS) and diacylglycerylhydroxymethyl-N,N,N-trimethyl-β-alanine (DGTA) are structural isomers that are the most commonly described betaine lipids in microalgae. The structural differentiation and precise identification of DGTS and DGTA in microalgae need to be established during mass spectrometry analysis. METHODS Total lipid was extracted from Amphora spp. with CHCl3 /CH3 OH (1:1, v/v). The qualitative analysis of DGTS and DGTA in Amphora spp. was carried out using Li+ /H+ dual mode by ultra-performance liquid chromatography/quadrupole time-of-flight mass spectrometry operating in MSE mode (UPLC/QTOF MSE ). RESULTS Characteristic fragment ions [C10 H22 O5 N]+ at m/z 236.15 and [C7 H14 O2 N]+ at m/z 144.10 from the [M + H]+ precursor ion can be used for the qualitative analysis of both DGTA and DGTS, whereas the loss of m/z 87 and 74 from the [M + Li]+ precursor ion are specific for DGTS, and the loss of m/z 103 from the [M + Li]+ precursor ion is only for DGTA. As a result, 9 DGTSs and 16 DGTAs with different fatty acids were identified simultaneously in Amphora spp. Semi-quantitative analysis of DGTS and DGTA in Amphora spp. showed that the contents of DGTS ranged from 0.003 to 0.438 nmol mg-1 dw, and that of DGTA from 0.004 to 0.414 nmol mg-1 dw. CONCLUSIONS This is the first report to achieve the ambiguous structural identification of DGTS and DGTA by UPLC/QTOF MSE using dual Li+ /H+ adduct ion mode, which has remained a challenge in the past. It could provide new insights into their phylogeny and be helpful to characterize the natural phytoplankton communities as intact polar lipid biomarkers. Copyright © 2017 John Wiley & Sons, Ltd.
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Affiliation(s)
- Yanrong Li
- Key Laboratory of Applied Marine Biotechnology, Ningbo University, Chinese Ministry of Education, Ningbo, 315211, China
- Ningbo Institute of Oceanography, Ningbo, 315211, China
| | - Yamin Lou
- Key Laboratory of Applied Marine Biotechnology, Ningbo University, Chinese Ministry of Education, Ningbo, 315211, China
| | - Tong Mu
- Ningbo Institute of Oceanography, Ningbo, 315211, China
| | - Jilin Xu
- Key Laboratory of Applied Marine Biotechnology, Ningbo University, Chinese Ministry of Education, Ningbo, 315211, China
| | - Chengxu Zhou
- Key Laboratory of Applied Marine Biotechnology, Ningbo University, Chinese Ministry of Education, Ningbo, 315211, China
| | - Xiaojun Yan
- Ningbo Institute of Oceanography, Ningbo, 315211, China
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Cañavate JP, Armada I, Hachero-Cruzado I. Interspecific variability in phosphorus-induced lipid remodelling among marine eukaryotic phytoplankton. THE NEW PHYTOLOGIST 2017; 213:700-713. [PMID: 27605045 DOI: 10.1111/nph.14179] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2016] [Accepted: 07/28/2016] [Indexed: 05/10/2023]
Abstract
The response of marine microalgal lipids to phosphorus is of central importance in phytoplankton ecology but remains poorly understood. We determined how taxonomically diverse microalgal species remodelled their lipid class profile in response to phosphorus availability and whether these changes coincided with those already known to occur in land plants and in the limited number of phytoplankton species for which data are available. The complete lipid class profile and specific lipid ratios influenced by phosphorus availability were quantified in two green microalgae and seven Chromalveolates exposed to phosphorus repletion, deprivation and replenishment. Lipid class cell quota changes in the two green microalgae resembled the currently described pattern of betaine lipids substituting for phospholipids under phosphorus depletion, whereas only two of the studied Chromalveolates showed this pattern. Sulpholipids counterbalanced phosphatidylglycerol only in Picochlorum atomus. In all other species, both lipids decreased simultaneously under phosphorus deprivation, although sulpholipids declined more slowly. Phosphorus deprivation always induced a decrease in digalactosyl-diacylglycerol. However, the ratio of digalactosyl-diacylglycerol to total phospholipids increased in eight species and remained unchanged in Isochrysis galbana. Marine phytoplankton seems to have evolved a diversified mechanism for remodelling its lipid class profile under the influence of phosphorus, with cryptophytes and particularly haptophytes exhibiting previously unobserved lipid responses to phosphorus.
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Affiliation(s)
- José Pedro Cañavate
- IFAPA Centro El Toruño, Andalusia Research and Training Institute for Fisheries and Agriculture, 11500-El Puerto de Santa Maria, Cádiz, Spain
| | - Isabel Armada
- IFAPA Centro El Toruño, Andalusia Research and Training Institute for Fisheries and Agriculture, 11500-El Puerto de Santa Maria, Cádiz, Spain
| | - Ismael Hachero-Cruzado
- IFAPA Centro El Toruño, Andalusia Research and Training Institute for Fisheries and Agriculture, 11500-El Puerto de Santa Maria, Cádiz, Spain
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Shemesh Z, Leu S, Khozin-Goldberg I, Didi-Cohen S, Zarka A, Boussiba S. Inducible expression of Haematococcus oil globule protein in the diatom Phaeodactylum tricornutum : Association with lipid droplets and enhancement of TAG accumulation under nitrogen starvation. ALGAL RES 2016. [DOI: 10.1016/j.algal.2016.07.002] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Rai V, Karthikaichamy A, Das D, Noronha S, Wangikar PP, Srivastava S. Multi-omics Frontiers in Algal Research: Techniques and Progress to Explore Biofuels in the Postgenomics World. OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY 2016; 20:387-99. [DOI: 10.1089/omi.2016.0065] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Vineeta Rai
- Department of Biosciences and Bioengineering, Proteomics Laboratory, Indian Institute of Technology Bombay, Mumbai, India
| | | | - Debasish Das
- Department of Biosciences and Bioengineering, Indian Institute of Technology, Guwahati, India
- DBT PAN IIT Centre for Bioenergy, Indian Institute of Technology, Bombay, Mumbai, India
| | - Santosh Noronha
- DBT PAN IIT Centre for Bioenergy, Indian Institute of Technology, Bombay, Mumbai, India
- Wadhwani Research Center for Bioengineering, Indian Institute of Technology Bombay, Mumbai, India
- Department of Chemical Engineering, Indian Institute of Technology Bombay, Mumbai, India
| | - Pramod P. Wangikar
- DBT PAN IIT Centre for Bioenergy, Indian Institute of Technology, Bombay, Mumbai, India
- Wadhwani Research Center for Bioengineering, Indian Institute of Technology Bombay, Mumbai, India
- Department of Chemical Engineering, Indian Institute of Technology Bombay, Mumbai, India
| | - Sanjeeva Srivastava
- Department of Biosciences and Bioengineering, Proteomics Laboratory, Indian Institute of Technology Bombay, Mumbai, India
- DBT PAN IIT Centre for Bioenergy, Indian Institute of Technology, Bombay, Mumbai, India
- Wadhwani Research Center for Bioengineering, Indian Institute of Technology Bombay, Mumbai, India
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Cañavate JP, Armada I, Ríos JL, Hachero-Cruzado I. Exploring occurrence and molecular diversity of betaine lipids across taxonomy of marine microalgae. PHYTOCHEMISTRY 2016; 124:68-78. [PMID: 26895707 DOI: 10.1016/j.phytochem.2016.02.007] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2015] [Revised: 02/08/2016] [Accepted: 02/11/2016] [Indexed: 06/05/2023]
Abstract
Betaine lipids (BL) from ten microalgae species of the kingdoms Plantae and Chromista were identified and quantified by HPLC/ESI-TOF-MS. Diacylgyceryl-N-trimethylhomoserine (DGTS) was detected in Trebouxiophyceae and Eustigmatophyceae species, whereas Tetraselmis suecica was described as the first green algae containing diacylglyceryl-hydroxymethyl-N,N,N-trimethyl-beta-alanine (DGTA). DGTA molecular species where also characterized in Cryptophyceae species as well as in the Bacillariophyceae diatom Phaeodactylum tricornutum. The Mediophyceae diatom Chaetoceros gracilis had no DGTA, but contained diacylglyceryl-carboxyhydroxymethylcholine (DGCC). A principal coordinate (PCO) analysis of microalgae species revealed the existence of three main clusters around each BL type. The first PCO axis (43.9% of total variation) grouped Chlorophyceae, Trebouxiophyceae and Eustigmatophyceae species and positively correlated with DGTS. The second PCO axis (27.8% of total variation) segregated DGTA from DGCC containing species. Cryptophyceae, Bacillariophyceae and Chlorodendrophyceae were the more closely associated species to DGTA. Mediophyceae and Dinophyceae species contained DGCC as the only BL. Molecular diversity varied from the simplest DGCC composition in Gyrodinium dorsum to the highest spectrum of ten different molecular species detected for DGTA (Rhodomonas baltica) and DGCC (C. gracilis). The fatty acid profile of DGTS was very dissimilar to that of the whole lipid cell content. DGTS from Nannochloropsis gaditana was highly unsaturated respecting to total lipids, whereas in Picochlorum atomus DGTS unsaturation was nearly one half to that of total lipids. Dissimilarity between DGTA and total lipid fatty acid profile was minimum among all BL and DGTA fatty acid unsaturation was the maximum observed in the study. New DGCC molecular species enriched in 20:5 were described in Mediophyceae diatoms. Multivariate microalgae ordination using BL as descriptors revealed a higher chemotaxonomic potential than that based on their respective BL fatty acid profile. Nevertheless, taxonomic resolution was improved when fatty acids from the whole cell lipid pool were used.
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Affiliation(s)
- José Pedro Cañavate
- Instituto de Investigación Agraria y Pesquera, Centro El Toruño, Junta de Andalucía, Apartado 16, 11500 Puerto de Santa María, Cádiz, Spain.
| | - Isabel Armada
- Instituto de Investigación Agraria y Pesquera, Centro El Toruño, Junta de Andalucía, Apartado 16, 11500 Puerto de Santa María, Cádiz, Spain
| | - José Luis Ríos
- Instituto de la Grasa, CSIC, Padre García Tejero 4, 41012 Sevilla, Spain
| | - Ismael Hachero-Cruzado
- Instituto de Investigación Agraria y Pesquera, Centro El Toruño, Junta de Andalucía, Apartado 16, 11500 Puerto de Santa María, Cádiz, Spain
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Abstract
Microalgae present a huge and still insufficiently tapped resource of very long-chain omega-3 and omega-6 polyunsaturated fatty acids (VLC-PUFA) for human nutrition and medicinal applications. This chapter describes the diversity of unicellular eukaryotic microalgae in respect to VLC-PUFA biosynthesis. Then, we outline the major biosynthetic pathways mediating the formation of VLC-PUFA by sequential desaturation and elongation of C18-PUFA acyl groups. We address the aspects of spatial localization of those pathways and elaborate on the role for VLC-PUFA in microalgal cells. Recent progress in microalgal genetic transformation and molecular engineering has opened the way to increased production efficiencies for VLC-PUFA. The perspectives of photobiotechnology and metabolic engineering of microalgae for altered or enhanced VLC-PUFA production are also discussed.
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Affiliation(s)
- Inna Khozin-Goldberg
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, 84990, Israel.
| | - Stefan Leu
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, 84990, Israel
| | - Sammy Boussiba
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, 84990, Israel
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Xiao Y, Zhang J, Cui J, Yao X, Sun Z, Feng Y, Cui Q. Simultaneous accumulation of neutral lipids and biomass in Nannochloropsis oceanica IMET1 under high light intensity and nitrogen replete conditions. ALGAL RES 2015. [DOI: 10.1016/j.algal.2015.05.019] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Kaye Y, Grundman O, Leu S, Zarka A, Zorin B, Didi-Cohen S, Khozin-Goldberg I, Boussiba S. Metabolic engineering toward enhanced LC-PUFA biosynthesis in Nannochloropsis oceanica : Overexpression of endogenous Δ12 desaturase driven by stress-inducible promoter leads to enhanced deposition of polyunsaturated fatty acids in TAG. ALGAL RES 2015. [DOI: 10.1016/j.algal.2015.05.003] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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Brychkova G, Yarmolinsky D, Batushansky A, Grishkevich V, Khozin-Goldberg I, Fait A, Amir R, Fluhr R, Sagi M. Sulfite Oxidase Activity Is Essential for Normal Sulfur, Nitrogen and Carbon Metabolism in Tomato Leaves. PLANTS 2015; 4:573-605. [PMID: 27135342 PMCID: PMC4844397 DOI: 10.3390/plants4030573] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/07/2015] [Revised: 07/30/2015] [Accepted: 08/07/2015] [Indexed: 11/24/2022]
Abstract
Plant sulfite oxidase [SO; E.C.1.8.3.1] has been shown to be a key player in protecting plants against exogenous toxic sulfite. Recently we showed that SO activity is essential to cope with rising dark-induced endogenous sulfite levels in tomato plants (Lycopersicon esculentum/Solanum lycopersicum Mill. cv. Rheinlands Ruhm). Here we uncover the ramifications of SO impairment on carbon, nitrogen and sulfur (S) metabolites. Current analysis of the wild-type and SO-impaired plants revealed that under controlled conditions, the imbalanced sulfite level resulting from SO impairment conferred a metabolic shift towards elevated reduced S-compounds, namely sulfide, S-amino acids (S-AA), Co-A and acetyl-CoA, followed by non-S-AA, nitrogen and carbon metabolite enhancement, including polar lipids. Exposing plants to dark-induced carbon starvation resulted in a higher degradation of S-compounds, total AA, carbohydrates, polar lipids and total RNA in the mutant plants. Significantly, a failure to balance the carbon backbones was evident in the mutants, indicated by an increase in tricarboxylic acid cycle (TCA) cycle intermediates, whereas a decrease was shown in stressed wild-type plants. These results indicate that the role of SO is not limited to a rescue reaction under elevated sulfite, but SO is a key player in maintaining optimal carbon, nitrogen and sulfur metabolism in tomato plants.
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Affiliation(s)
- Galina Brychkova
- French Associates Institute for Agriculture and Biotechnology of Drylands, Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus 84990, Israel.
| | - Dmitry Yarmolinsky
- French Associates Institute for Agriculture and Biotechnology of Drylands, Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus 84990, Israel.
| | - Albert Batushansky
- French Associates Institute for Agriculture and Biotechnology of Drylands, Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus 84990, Israel.
| | - Vladislav Grishkevich
- French Associates Institute for Agriculture and Biotechnology of Drylands, Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus 84990, Israel.
| | - Inna Khozin-Goldberg
- French Associates Institute for Agriculture and Biotechnology of Drylands, Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus 84990, Israel.
| | - Aaron Fait
- French Associates Institute for Agriculture and Biotechnology of Drylands, Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus 84990, Israel.
| | - Rachel Amir
- Migal-Galilee Technology Center, Southern Industrial Zone, POB831 Kiryat-Shmona 11016, Israel.
| | - Robert Fluhr
- Department of Plant Sciences, Weizmann Institute of Science, P.O.B. 26 Rehovot 76100, Israel.
| | - Moshe Sagi
- French Associates Institute for Agriculture and Biotechnology of Drylands, Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus 84990, Israel.
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Elucidating butanol tolerance mediated by a response regulator Sll0039 in Synechocystis sp. PCC 6803 using a metabolomic approach. Appl Microbiol Biotechnol 2015; 99:1845-57. [DOI: 10.1007/s00253-015-6374-y] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2014] [Revised: 12/27/2014] [Accepted: 12/30/2014] [Indexed: 10/24/2022]
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Shtaida N, Khozin-Goldberg I, Solovchenko A, Chekanov K, Didi-Cohen S, Leu S, Cohen Z, Boussiba S. Downregulation of a putative plastid PDC E1α subunit impairs photosynthetic activity and triacylglycerol accumulation in nitrogen-starved photoautotrophic Chlamydomonas reinhardtii. JOURNAL OF EXPERIMENTAL BOTANY 2014; 65:6563-76. [PMID: 25210079 PMCID: PMC4246187 DOI: 10.1093/jxb/eru374] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
The chloroplast pyruvate dehydrogenase complex (cpPDC) catalyses the oxidative decarboxylation of pyruvate forming acetyl-CoA, an immediate primer for the initial reactions of de novo fatty acid (FA) synthesis. Little is known about the source of acetyl-CoA in the chloroplasts of photosynthetic microalgae, which are capable of producing high amounts of the storage lipid triacylglycerol (TAG) under conditions of nutrient stresses. We generated Chlamydomonas reinhardtii CC-1618 mutants with decreased expression of the PDC2_E1α gene, encoding the putative chloroplast pyruvate dehydrogenase subunit E1α, using artificial microRNA. A comparative study on the effects of PDC2_E1α silencing on FAs and TAG production in C. reinhardtii, grown photoautotrophically and mixotrophically, with and without a nitrogen source in the nutrient medium, was carried out. Reduced expression of PDC2 _E1α led to a severely hampered photoautotrophic growth phenotype with drastic impairment in TAG accumulation under nitrogen deprivation. In the presence of acetate, downregulation of PDC2_E1α exerted little to no effect on TAG production and photosynthetic activity. In contrast, under photoautotrophic conditions, especially in the absence of a nitrogen source, a dramatic decline in photosynthetic oxygen evolution and photosystem II quantum yield against a background of the apparent over-reduction of the photosynthetic electron chain was recorded. Our results suggest an essential role of cpPDC in the supply of carbon precursors for de novo FA synthesis in microalgae under conditions of photoautotrophy. A shortage of this supply is detrimental to the nitrogen-starvation-induced synthesis of storage TAG, an important carbon and energy sink in stressed Chlamydomonas cells, thereby impairing the acclimation ability of the microalga.
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Affiliation(s)
- Nastassia Shtaida
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus 84990, Israel
| | - Inna Khozin-Goldberg
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus 84990, Israel
| | - Alexei Solovchenko
- Department of Bioengineering, Faculty of Biology, Moscow State University, 119234, GSP-1 Moscow, Russia
| | - Konstantin Chekanov
- Department of Bioengineering, Faculty of Biology, Moscow State University, 119234, GSP-1 Moscow, Russia
| | - Shoshana Didi-Cohen
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus 84990, Israel
| | - Stefan Leu
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus 84990, Israel
| | - Zvi Cohen
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus 84990, Israel
| | - Sammy Boussiba
- Microalgal Biotechnology Laboratory, French Associates Institute for Agriculture and Biotechnology of Drylands, J. Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus 84990, Israel
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Wang Y, Shi M, Niu X, Zhang X, Gao L, Chen L, Wang J, Zhang W. Metabolomic basis of laboratory evolution of butanol tolerance in photosynthetic Synechocystis sp. PCC 6803. Microb Cell Fact 2014; 13:151. [PMID: 25366096 PMCID: PMC4234862 DOI: 10.1186/s12934-014-0151-y] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2014] [Accepted: 10/18/2014] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Recent efforts demonstrated the potential application of cyanobacteria as a "microbial cell factory" to produce butanol directly from CO2. However, cyanobacteria have very low tolerance to the toxic butanol, which limits the economic viability of this renewable system. RESULTS Through a long-term experimental evolution process, we achieved a 150% increase of the butanol tolerance in a model cyanobacterium Synechocystis sp. PCC 6803 after a continuous 94 passages for 395 days in BG11 media amended with gradually increased butanol concentration from 0.2% to 0.5% (v/v). To decipher the molecular mechanism responsible for the tolerance increase, we employed an integrated GC-MS and LC-MS approach to determine metabolomic profiles of the butanol-tolerant Synechocystis strains isolated from several stages of the evolution, and then applied PCA and WGCNA network analyses to identify the key metabolites and metabolic modules related to the increased tolerance. The results showed that unstable metabolites of 3-phosphoglyceric acid (3PG), D-fructose 6-phosphate (F6P), D-glucose 6-phosphate (G6P), NADPH, phosphoenolpyruvic acid (PEP), D-ribose 5-phosphate (R5P), and stable metabolites of glycerol, L-serine and stearic acid were differentially regulated during the evolution process, which could be related to tolerance increase to butanol in Synechocystis. CONCLUSIONS The study provided the first time-series description of the metabolomic changes related to the gradual increase of butanol tolerance, and revealed a metabolomic basis important for rational tolerance engineering in Synechocystis.
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Affiliation(s)
- Yaxing Wang
- Laboratory of Synthetic Microbiology, School of Chemical Engineering & Technology, Tianjin University, Tianjin, 300072, P.R. China. .,Key Laboratory of Systems Bioengineering, Ministry of Education of China, Tianjin, 300072, P.R. China. .,Collaborative Innovation Center of Chemical Science and Engineering, Tianjin, P.R. China.
| | - Mengliang Shi
- Laboratory of Synthetic Microbiology, School of Chemical Engineering & Technology, Tianjin University, Tianjin, 300072, P.R. China. .,Key Laboratory of Systems Bioengineering, Ministry of Education of China, Tianjin, 300072, P.R. China. .,Collaborative Innovation Center of Chemical Science and Engineering, Tianjin, P.R. China.
| | - Xiangfeng Niu
- Laboratory of Synthetic Microbiology, School of Chemical Engineering & Technology, Tianjin University, Tianjin, 300072, P.R. China. .,Key Laboratory of Systems Bioengineering, Ministry of Education of China, Tianjin, 300072, P.R. China. .,Collaborative Innovation Center of Chemical Science and Engineering, Tianjin, P.R. China.
| | - Xiaoqing Zhang
- Laboratory of Synthetic Microbiology, School of Chemical Engineering & Technology, Tianjin University, Tianjin, 300072, P.R. China. .,Key Laboratory of Systems Bioengineering, Ministry of Education of China, Tianjin, 300072, P.R. China. .,Collaborative Innovation Center of Chemical Science and Engineering, Tianjin, P.R. China.
| | - Lianju Gao
- Laboratory of Synthetic Microbiology, School of Chemical Engineering & Technology, Tianjin University, Tianjin, 300072, P.R. China. .,Key Laboratory of Systems Bioengineering, Ministry of Education of China, Tianjin, 300072, P.R. China. .,Collaborative Innovation Center of Chemical Science and Engineering, Tianjin, P.R. China.
| | - Lei Chen
- Laboratory of Synthetic Microbiology, School of Chemical Engineering & Technology, Tianjin University, Tianjin, 300072, P.R. China. .,Key Laboratory of Systems Bioengineering, Ministry of Education of China, Tianjin, 300072, P.R. China. .,Collaborative Innovation Center of Chemical Science and Engineering, Tianjin, P.R. China.
| | - Jiangxin Wang
- Laboratory of Synthetic Microbiology, School of Chemical Engineering & Technology, Tianjin University, Tianjin, 300072, P.R. China. .,Key Laboratory of Systems Bioengineering, Ministry of Education of China, Tianjin, 300072, P.R. China. .,Collaborative Innovation Center of Chemical Science and Engineering, Tianjin, P.R. China.
| | - Weiwen Zhang
- Laboratory of Synthetic Microbiology, School of Chemical Engineering & Technology, Tianjin University, Tianjin, 300072, P.R. China. .,Key Laboratory of Systems Bioengineering, Ministry of Education of China, Tianjin, 300072, P.R. China. .,Collaborative Innovation Center of Chemical Science and Engineering, Tianjin, P.R. China.
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Advances in the Production of High-Value Products by Microalgae. Ind Biotechnol (New Rochelle N Y) 2014. [DOI: 10.1089/ind.2013.0039] [Citation(s) in RCA: 168] [Impact Index Per Article: 16.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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40
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Li F, Gao D, Hu H. High-efficiency nuclear transformation of the oleaginous marine Nannochloropsis species using PCR product. Biosci Biotechnol Biochem 2014; 78:812-7. [DOI: 10.1080/09168451.2014.905184] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
Abstract
Nannochloropsis are model species for investigating biofuel production by algae. To develop them into an integrated photons-to-fuel production platform, high efficiency transformation methods are necessary. Here, we obtained the β-tubulin promoter regions of all recognized species of genus Nannochloropsis, and successfully transformed all five marine species by electroporation. In addition, the PCR amplified double stranded DNA fragments (PCR fragments) based transformation system was established in these Nannochloropsis species, which showed much higher transformation efficiency (10.7–61.2 × 10−6, 1.5–13-fold) than that of linearized plasmid based transformation. The cotransformation of N. salina using a circular plasmid containing a non-selectable GUS gene and a PCR fragment containing only a selection marker cassette was also achieved and found to be very efficient (over 50%). This simple and highly efficient transformation protocol reported in our study provided a useful tool for gene functional analysis and genetic engineering of the oleaginous Nannochloropsis species.
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Affiliation(s)
- Fengjuan Li
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, China
| | - Dawen Gao
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, China
| | - Hanhua Hu
- Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, China
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Solovchenko A, Lukyanov A, Solovchenko O, Didi-Cohen S, Boussiba S, Khozin-Goldberg I. Interactive effects of salinity, high light, and nitrogen starvation on fatty acid and carotenoid profiles inNannochloropsis oceanicaCCALA 804. EUR J LIPID SCI TECH 2014. [DOI: 10.1002/ejlt.201300456] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Alexei Solovchenko
- Department of Bioengineering; Faculty of Biology; Moscow State University; Moscow Russia
- Timiryazev Institute of Plant Physiology; Russian Academy of Sciences; Moscow Russia
| | - Alexander Lukyanov
- Department of Bioengineering; Faculty of Biology; Moscow State University; Moscow Russia
| | - Olga Solovchenko
- Department of Bioengineering; Faculty of Biology; Moscow State University; Moscow Russia
| | - Shoshana Didi-Cohen
- Microalgal Biotechnology Laboratory, the Jacob Blaustein Institutes for Desert Research; Ben-Gurion University of the Negev; Sede-Boker Campus Midreshet Ben-Gurion Israel
| | - Sammy Boussiba
- Microalgal Biotechnology Laboratory, the Jacob Blaustein Institutes for Desert Research; Ben-Gurion University of the Negev; Sede-Boker Campus Midreshet Ben-Gurion Israel
| | - Inna Khozin-Goldberg
- Microalgal Biotechnology Laboratory, the Jacob Blaustein Institutes for Desert Research; Ben-Gurion University of the Negev; Sede-Boker Campus Midreshet Ben-Gurion Israel
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