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Tang J, Wu L, Fan X, Dong X, Li X, Xie Y, Li J, Rao J, Li T, Gan W. Superstrong, sustainable, origami wood paper enabled by dual-phase nanostructure regulation in cell walls. SCIENCE ADVANCES 2024; 10:eado5142. [PMID: 39058784 PMCID: PMC11277399 DOI: 10.1126/sciadv.ado5142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Accepted: 06/24/2024] [Indexed: 07/28/2024]
Abstract
Constructing a crystalline-amorphous hybrid structure is an effective strategy to overcome the conflict between the strength and toughness of materials. However, achieving such a material structure often involves complex, energy-intensive processing. Here, we leverage the natural wood featuring coexisting crystalline and amorphous regions to achieve superstrong and ultratough wood paper (W-paper) via a dual-phase nanostructure regulation strategy. After partially removing amorphous hemicellulose and eliminating most lignin, the treated wood can self-densify through an energy-efficient air drying, resulting in a W-paper with high tensile strength, toughness, and folding endurance. Coarse-grained molecular dynamics simulations reveal the underlying deformation mechanism of the crystalline and amorphous regions inside cell walls and the failure mechanism of the W-paper under tension. Life cycle assessment reveals that W-paper shows a lower environmental impact than commercial paper and common plastics. This dual-phase nanostructure regulation based on natural wood may provide valuable insights for developing high-performance and sustainable film materials.
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Affiliation(s)
- Jianfu Tang
- Key Laboratory of Bio-based Material Science & Technology (Ministry of Education), Northeast Forestry University, Harbin, PR China
| | - Lianping Wu
- Department of Mechanical Engineering, University of Maryland, College Park, MD, USA
| | - Xueqin Fan
- Key Laboratory of Bio-based Material Science & Technology (Ministry of Education), Northeast Forestry University, Harbin, PR China
| | - Xiaofei Dong
- Key Laboratory of Bio-based Material Science & Technology (Ministry of Education), Northeast Forestry University, Harbin, PR China
| | - Xueqi Li
- Key Laboratory of Bio-based Material Science & Technology (Ministry of Education), Northeast Forestry University, Harbin, PR China
| | - Yanjun Xie
- Key Laboratory of Bio-based Material Science & Technology (Ministry of Education), Northeast Forestry University, Harbin, PR China
| | - Jian Li
- Key Laboratory of Bio-based Material Science & Technology (Ministry of Education), Northeast Forestry University, Harbin, PR China
| | - Jiancun Rao
- AIM Lab, Maryland NanoCenter, University of Maryland, College Park, MD, USA
| | - Teng Li
- Department of Mechanical Engineering, University of Maryland, College Park, MD, USA
| | - Wentao Gan
- Key Laboratory of Bio-based Material Science & Technology (Ministry of Education), Northeast Forestry University, Harbin, PR China
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2
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Todhanakasem T, Van Tai N, Pornpukdeewattana S, Charoenrat T, Young BM, Wattanachaisaereekul S. The Relationship between Microbial Communities in Coffee Fermentation and Aroma with Metabolite Attributes of Finished Products. Foods 2024; 13:2332. [PMID: 39123524 PMCID: PMC11312110 DOI: 10.3390/foods13152332] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2024] [Revised: 07/22/2024] [Accepted: 07/23/2024] [Indexed: 08/12/2024] Open
Abstract
Coffee is a critical agricultural commodity and is used to produce premium beverages enjoyed by people worldwide. The microbiome of coffee beans has proven to be an essential tool that improves the flavor profile of coffee by creating aromatic flavor compounds through natural fermentation. This study investigated the natural microbial consortium during the wet process fermentation of coffee onsite in Thailand in order to identify the correlation between microbial diversity and biochemical characteristics including flavor, aroma, and metabolic attributes. Our study found 64 genera of bacteria and 59 genera of yeast/fungi present during the fermentation process. Group of microbes, mainly yeast and lactic acid bacteria, that predominated in the process were significantly correlated with preferable flavor and aroma compounds, including linalyl formate, linalool, cis-isoeugenol, trans-geraniol, and (-)-isopulegol. Some of the detected metabolites were found to be active compounds which could play a role in health.
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Affiliation(s)
- Tatsaporn Todhanakasem
- School of Food Industry, King Mongkut’s Institute of Technology Ladkrabang, Bangkok 10520, Thailand; (N.V.T.); (S.P.); (S.W.)
| | - Ngo Van Tai
- School of Food Industry, King Mongkut’s Institute of Technology Ladkrabang, Bangkok 10520, Thailand; (N.V.T.); (S.P.); (S.W.)
| | - Soisuda Pornpukdeewattana
- School of Food Industry, King Mongkut’s Institute of Technology Ladkrabang, Bangkok 10520, Thailand; (N.V.T.); (S.P.); (S.W.)
| | - Theppanya Charoenrat
- Department of Biotechnology, Faculty of Science and Technology, Thammasat University (Rangsit Centre), Bangkok 10200, Thailand;
| | - Briana M. Young
- Department of Medical Microbiology and Immunology, School of Medicine, University of California at Davis, One Shields Ave., Davis, CA 95616, USA;
| | - Songsak Wattanachaisaereekul
- School of Food Industry, King Mongkut’s Institute of Technology Ladkrabang, Bangkok 10520, Thailand; (N.V.T.); (S.P.); (S.W.)
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3
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Fu S, Xie Z, Feng K, Zou H, Guo R, Lian S. Energetic utilization of corn stalk and elimination of methyl orange in ECMO-like integrated reactor: Co-occurrence of anaerobic digestion and aerobic treatment. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 360:121139. [PMID: 38744212 DOI: 10.1016/j.jenvman.2024.121139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 04/29/2024] [Accepted: 05/09/2024] [Indexed: 05/16/2024]
Abstract
For the simultaneous energetic utilization of corn stalk and azo-dye contaminated wastewater, an ECMO-like integrated reactor was come up to achieve the biogas production and azo-dye degradation during anaerobic digestion (AD). Methyl orange (MO) was selected as the model compound for azo-dye. The ECMO-like reactor included AD main reactor with a spray device and solid-liquid separation components, integrated with an aeration reactor for biogas slurry. Methane yields of corn stalks (100.82 mL/g VS) were highest in the ECMO-like reactor, compared with reactors without aeration. As a stable metabolite, 4-aminobenzenesulfonic acid (4-ABA) was detected in AD, while it was assumed that the metabolites can be further transformed in the ECMO-like reactor (R3), due to the 4-ABA removal efficiency as 92.87 % after 35 days' digestion. Class Alphaproteobacteria and Clostridia were assumed as functional microbes responding to aeration. Overall, this ECMO-like integrated reactor provided a novel biotechnology strategy for agricultural and azo dye waste treatment.
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Affiliation(s)
- Shanfei Fu
- Shandong Industrial Engineering Laboratory of Biogas Production & Utilization, Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, NO. 189 Songling Road, Qingdao, 266101, PR China; Jiangsu Key Laboratory of Anaerobic Biotechnology, School of Environment and Civil Engineering, Jiangnan University, NO.1800 Lihu Avenue, Wuxi, Jiangsu Province, 214122, PR China; Shandong Energy Institute, NO. 189 Songling Road, Qingdao, 266101, PR China; Qingdao New Energy Shandong Laboratory, NO. 189 Songling Road, Qingdao, 266101, PR China; Dalian National Laboratory for Clean Energy, Dalian, 116023, PR China.
| | - Zhong Xie
- Jiangsu Key Laboratory of Anaerobic Biotechnology, School of Environment and Civil Engineering, Jiangnan University, NO.1800 Lihu Avenue, Wuxi, Jiangsu Province, 214122, PR China.
| | - Kai Feng
- Jiangsu Key Laboratory of Anaerobic Biotechnology, School of Environment and Civil Engineering, Jiangnan University, NO.1800 Lihu Avenue, Wuxi, Jiangsu Province, 214122, PR China.
| | - Hua Zou
- Jiangsu Key Laboratory of Anaerobic Biotechnology, School of Environment and Civil Engineering, Jiangnan University, NO.1800 Lihu Avenue, Wuxi, Jiangsu Province, 214122, PR China.
| | - Rongbo Guo
- Shandong Industrial Engineering Laboratory of Biogas Production & Utilization, Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, NO. 189 Songling Road, Qingdao, 266101, PR China; Shandong Energy Institute, NO. 189 Songling Road, Qingdao, 266101, PR China; Qingdao New Energy Shandong Laboratory, NO. 189 Songling Road, Qingdao, 266101, PR China; Dalian National Laboratory for Clean Energy, Dalian, 116023, PR China.
| | - Shujuan Lian
- Shandong Industrial Engineering Laboratory of Biogas Production & Utilization, Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, NO. 189 Songling Road, Qingdao, 266101, PR China; Shandong Energy Institute, NO. 189 Songling Road, Qingdao, 266101, PR China; Qingdao New Energy Shandong Laboratory, NO. 189 Songling Road, Qingdao, 266101, PR China.
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4
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Tian B, Mao J, Zu M, Wu R, Xiao C. Study of the Mechanism of Hydrolysis of Hemicellulose from Lignocellulose during Alkali Thermal Pretreatment by Density Functional Theory and Experiment. J Org Chem 2024. [PMID: 38191296 DOI: 10.1021/acs.joc.3c01668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2024]
Abstract
The covalent bond fracture of hemicellulose leads to hemicellulose hydrolysis during lignocellulosic alkali thermal pretreatment, which has not previously been reported. Density functional theory was used to study the mechanism of hydrolysis of the hemicellulose model compounds under alkali conditions. There are four reaction paths for xylose formation, among which the reaction path with the lowest energy barrier is that in which the nucleophile captures H30 to generate water. The deprotonated hydroxyl group attacks the carbon on the glycoside bond, resulting in the cleavage of the glycoside bond and the formation of a new carbon-oxygen covalent bond, with an energy barrier of 154.2 kJ/mol. The nucleophile further attacks the glycosidic bond to form a new xylose residue with an energy barrier of 111.9 kJ/mol. When the glycosidic bond breaks, the orbital interaction with the largest proportion causes the transfer of ∼0.511 electron from the glycosidic bond oxygen to the deprotonated hydroxy oxygen. In situ Fourier transform infrared spectroscopy is used for the identification of functional groups during the alkali thermal pretreatment. As the temperature increases, the feasibility of the reaction increases. This study lays a theoretical foundation for the development of the alkali thermal pretreatment of lignocellulose.
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Affiliation(s)
- Bobing Tian
- Department of Energy and Power Engineering, College of Electrical Engineering, Guizhou University, Huaxi District, Guiyang 550025, China
| | - Jiahua Mao
- Department of Energy and Power Engineering, College of Electrical Engineering, Guizhou University, Huaxi District, Guiyang 550025, China
| | - Mingfu Zu
- Department of Energy and Power Engineering, College of Electrical Engineering, Guizhou University, Huaxi District, Guiyang 550025, China
| | - Ruilin Wu
- Department of Energy and Power Engineering, College of Electrical Engineering, Guizhou University, Huaxi District, Guiyang 550025, China
| | - Chao Xiao
- Department of Energy and Power Engineering, College of Electrical Engineering, Guizhou University, Huaxi District, Guiyang 550025, China
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Rawindran H, Arif Bin Hut N, Vrasna DK, Goh PS, Lim JW, Liew CS, Ho CD, Kang HS, Shahid MK, Ng HS, Habila MA, Khoo KS. Ultrafiltration membrane fabricated from polyethylene terephthalate plastic waste for treating microalgal wastewater and reusing for microalgal cultivation. CHEMOSPHERE 2024; 346:140591. [PMID: 37918531 DOI: 10.1016/j.chemosphere.2023.140591] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 08/07/2023] [Accepted: 10/29/2023] [Indexed: 11/04/2023]
Abstract
Current study had made a significant progress in microalgal wastewater treatment through the implementation of an economically viable polyethylene terephthalate (PET) membrane derived from plastic bottle waste. The membrane exhibited an exceptional pure water flux of 156.5 ± 0.25 L/m2h and a wastewater flux of 15.37 ± 0.02 L/m2h. Moreover, the membrane demonstrated remarkable efficiency in selectively removing a wide range of residual parameters, achieving rejection rates up to 99%. The reutilization of treated wastewater to grow microalgae had resulted in a marginal decrease in microalgal density, from 10.01 ± 0.48 to 9.26 ± 0.66 g/g. However, this decline was overshadowed by a notable enhancement in lipid production with level rising from 181.35 ± 0.42 to 225.01 ± 0.11 mg/g. These findings signified the membrane's capacity to preserve nutrients availability within the wastewater; thus, positively influencing the lipid synthesis and accumulation within microalgal cells. Moreover, the membrane's comprehensive analysis of cross-sectional and surface topographies revealed the presence of macropores with a highly interconnected framework, significantly amplifying the available surface area for fluid flow. This exceptional structural attribute had substantially contributed to the membrane's efficacy by facilitating superior filtration and separation process. Additionally, the identified functional groups within the membrane aligned consistently with those commonly found in PET polymer, confirming the membrane's compatibility and efficacy in microalgal wastewater treatment.
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Affiliation(s)
- Hemamalini Rawindran
- HICoE-Centre for Biofuel and Biochemical Research, Institute of Self-Sustainable Building, Department of Fundamental and Applied Sciences, Universiti Teknologi PETRONAS, 32610, Seri Iskandar, Perak Darul Ridzuan, Malaysia
| | - Nur Arif Bin Hut
- Advanced Membrane Technology Research Centre, School of Chemical and Energy Engineering, Universiti Teknologi Malaysia, 81310, Johor, Malaysia
| | - Dhita Karunia Vrasna
- Advanced Membrane Technology Research Centre, School of Chemical and Energy Engineering, Universiti Teknologi Malaysia, 81310, Johor, Malaysia
| | - Pei Sean Goh
- Advanced Membrane Technology Research Centre, School of Chemical and Energy Engineering, Universiti Teknologi Malaysia, 81310, Johor, Malaysia
| | - Jun Wei Lim
- HICoE-Centre for Biofuel and Biochemical Research, Institute of Self-Sustainable Building, Department of Fundamental and Applied Sciences, Universiti Teknologi PETRONAS, 32610, Seri Iskandar, Perak Darul Ridzuan, Malaysia; Department of Biotechnology, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Sciences, 602105, Chennai, India.
| | - Chin Seng Liew
- HICoE-Centre for Biofuel and Biochemical Research, Institute of Self-Sustainable Building, Department of Fundamental and Applied Sciences, Universiti Teknologi PETRONAS, 32610, Seri Iskandar, Perak Darul Ridzuan, Malaysia
| | - Chii-Dong Ho
- Department of Chemical and Materials Engineering, Tamkang University, Tamsui, New Taipei, 251301, Taiwan
| | - Hooi-Siang Kang
- Marine Technology Center, Institute for Vehicle System & Engineering, Universiti Teknologi Malaysia, 81310, Johor Bahru, Johor, Malaysia
| | - Muhammad Kashif Shahid
- Research Institute of Environment & Biosystem, Chungnam National University, Yuseonggu, Daejeon, 34134, Republic of Korea
| | - Hui-Suan Ng
- Centre for Research and Graduate Studies, University of Cyberjaya, Persiaran Bestari, 63000, Cyberjaya, Selangor, Malaysia
| | - Mohamed A Habila
- Department of Chemistry, College of Science, King Saud University, P. O. Box 2455, Riyadh, 11451, Saudi Arabia
| | - Kuan Shiong Khoo
- Department of Chemical Engineering and Materials Science, Yuan Ze University, Taoyuan, Taiwan; Centre for Herbal Pharmacology and Environmental Sustainability, Chettinad Hospital and Research Institute, Chettinad Academy of Research and Education, Kelambakkam, 603103, Tamil Nadu, India.
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6
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Cuebas‐Irizarry MF, Grunden AM. Streptomyces spp. as biocatalyst sources in pulp and paper and textile industries: Biodegradation, bioconversion and valorization of waste. Microb Biotechnol 2024; 17:e14258. [PMID: 37017414 PMCID: PMC10832569 DOI: 10.1111/1751-7915.14258] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Revised: 03/14/2023] [Accepted: 03/21/2023] [Indexed: 04/06/2023] Open
Abstract
Complex polymers represent a challenge for remediating environmental pollution and an opportunity for microbial-catalysed conversion to generate valorized chemicals. Members of the genus Streptomyces are of interest because of their potential use in biotechnological applications. Their versatility makes them excellent sources of biocatalysts for environmentally responsible bioconversion, as they have a broad substrate range and are active over a wide range of pH and temperature. Most Streptomyces studies have focused on the isolation of strains, recombinant work and enzyme characterization for evaluating their potential for biotechnological application. This review discusses reports of Streptomyces-based technologies for use in the textile and pulp-milling industry and describes the challenges and recent advances aimed at achieving better biodegradation methods featuring these microbial catalysts. The principal points to be discussed are (1) Streptomyces' enzymes for use in dye decolorization and lignocellulosic biodegradation, (2) biotechnological processes for textile and pulp and paper waste treatment and (3) challenges and advances for textile and pulp and paper effluent treatment.
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Affiliation(s)
- Mara F. Cuebas‐Irizarry
- Department of Plant and Microbial BiologyNorth Carolina State UniversityPlant Sciences Building Rm 2323, 840 Oval DrRaleighNorth Carolina27606USA
| | - Amy M. Grunden
- Department of Plant and Microbial BiologyNorth Carolina State UniversityPlant Sciences Building Rm 2323, 840 Oval DrRaleighNorth Carolina27606USA
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Patel BY, Patel HK. Current approaches toward the removal of methylene blue dye from synthetic textile effluent using bacterial treated agricultural waste absorbent through statistical design. Heliyon 2023; 9:e19857. [PMID: 37809607 PMCID: PMC10559251 DOI: 10.1016/j.heliyon.2023.e19857] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Revised: 08/26/2023] [Accepted: 09/04/2023] [Indexed: 10/10/2023] Open
Abstract
Massive amounts of wastewater are produced by the textile industry, and this waste needs to be appropriately managed. Agricultural waste wheat straw (WS), a biosorbent that is both economically available and environmentally acceptable, was used in this work to treat textile effluent. Microbial treated modification approaches were utilized for WS to study the dye removal from textile wastewater. Total 15 different isolates were screened for the dye degradation ability from Surat textile industrial effluent. The most significant deterioration was seen in PPSUHB3 when compared to other isolates. The amount of methylene blue dye removal was examined using the isolate PPSUHB3 due to its high efficiency. Based on 16s rDNA sequencing, it was predicted that the isolate PPSUHB3 was Bacillus licheniformis, having great capacity to degrade dye & wheat straw by producing efficient enzyme. The isolate showed the highest decolorization % of MB dye during optimization with WS absorbent which was verified using FTIR and SEM. The dye removal process parameters were statistically optimized using a central composite design (CCD). Wheat straw with particle sizes of 180-250 mm was discovered to be a possible adsorbent for the removal of colour. The maximum removal of MB (55.89%) was obtained using a statistical experimental design at pH 6.36, Temperature 44.6 °C, and Bacteria Concentration 3.04%. The created model is highly significant, according to the ANOVA, which found an R2 value of 0.9812 for it. The validation experiment revealed that the experimental and projected results were strikingly similar. The study found that using bacterial treated wheat straw as an adsorbent may remove wastewater that contains colours at a low cost.
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Affiliation(s)
- Binal Y. Patel
- School of Science, P P Savani University, Surat, Gujarat, 394125, India
| | - Hiren K. Patel
- School of Science, P P Savani University, Surat, Gujarat, 394125, India
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Recent advances in lignin-based carbon materials and their applications: A review. Int J Biol Macromol 2022; 223:980-1014. [PMID: 36375669 DOI: 10.1016/j.ijbiomac.2022.11.070] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Revised: 10/30/2022] [Accepted: 11/08/2022] [Indexed: 11/13/2022]
Abstract
As the most abundant natural aromatic polymer, tens of million of tons of lignin produced in paper-making or biorefinery industry are used as fuel annually, which is a low-value utilization. Moreover, burning lignin results in large amounts of carbon dioxide and pollutants in the air. The potential of lignin is far from being fully exploited and the search for high value-added application of lignin is highly pursued. Because of the high carbon content of lignin, converting lignin into advanced carbon-based structural or functional materials is regarded as one of the most promising solutions for both environmental protection and utilization of renewable resources. Significant progresses in lignin-based carbon materials (LCMs) including porous carbon, activated carbon, carbon fiber, carbon aerogel, nanostructured carbon, etc., for various valued applications have been witnessed in recent years. Here, this review summarized the recent advances in LCMs from the perspectives of preparation, structure, and applications. In particular, this review attempts to figure out the intrinsic relationship between the structure and functionalities of LCMs from their recent applications. Hopefully, some thoughts and discussions on the structure-property relationship of LCMs can inspire researchers to stride over the present barriers in the preparation and applications of LCMs.
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Guts Bacterial Communities of Porcellio dilatatus: Symbionts Predominance, Functional Significance and Putative Biotechnological Potential. Microorganisms 2022; 10:microorganisms10112230. [PMID: 36422301 PMCID: PMC9692603 DOI: 10.3390/microorganisms10112230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2022] [Revised: 11/04/2022] [Accepted: 11/08/2022] [Indexed: 11/16/2022] Open
Abstract
Terrestrial isopods are effective herbivorous scavengers with an important ecological role in organic matter cycling. Their guts are considered to be a natural enrichment environment for lignocellulosic biomass (LCB)-degrading bacteria. The main goal of this work was to assess the structural diversity of Porcellio dilatatus gut bacterial communities using NGS technologies, and to predict their functional potential using PICRUSt2 software. Pseudomonadota, Actinomycetota, Bacillota, Cyanobacteria, Mycoplasmatota, Bacteroidota, Candidatus Patescibacteria and Chloroflexota were the most abundant phyla found in P. dilatatus gut bacterial communities. At a family level, we identified the presence of eleven common bacterial families. Functionally, the P. dilatatus gut bacterial communities exhibited enrichment in KEGG pathways related to the functional module of metabolism. With the predicted functional profile of P. dilatatus metagenomes, it was possible to envision putative symbiotic relationships between P. dilatatus gut bacterial communities and their hosts. It was also possible to foresee the presence of a well-adapted bacterial community responsible for nutrient uptake for the host and for maintaining host homeostasis. Genes encoding LCB-degrading enzymes were also predicted in all samples. Therefore, the P. dilatatus digestive tract may be considered a potential source of LCB-degrading enzymes that is not to be neglected.
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Tao J, Chen Q, Chen S, Lu P, Chen Y, Jin J, Li J, Xu Y, He W, Long T, Deng X, Yin H, Li Z, Fan J, Cao P. Metagenomic insight into the microbial degradation of organic compounds in fermented plant leaves. ENVIRONMENTAL RESEARCH 2022; 214:113902. [PMID: 35839908 DOI: 10.1016/j.envres.2022.113902] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 06/26/2022] [Accepted: 07/10/2022] [Indexed: 05/23/2023]
Abstract
Microbial degradation of organic compounds is an environmentally benign and energy efficient part in product processing. Fermentation of plant leaves involves enzymatic actions of many microorganisms. However, microbes and enzymes discovered from natural degradation communities were still limited by cultural methods. In this study, we used a metagenomics sequence-guided strategy to identify the microbes and enzymes involved in compound degradation and explore the potential synergy among community members in fermented tobacco leaves. The results showed that contents of protein, starch, pectin, lignin, and cellulose varied in fermented leaves from different growing sites. The different compound contents were closely related to taxonomic composition and functional profiles of foliar microbial communities. Microbial communities showed significant correlations with protein, lignin, and cellulose. Vital species for degradations of protein (Bacillus cereus and Terribacillus aidingensis), lignin (Klebsiella pneumoniae and Pantoea ananatis) and cellulose (Pseudomonas putida and Sphingomonas sp. Leaf20) were identified and relating hydrolytic enzymes were annotated. Further, twenty-two metagenome-assembled genomes (MAGs) were assembled from metagenomes and six potential cellulolytic genomes were used to reconstruct the cellulose-degrading process, revealing the potential metabolic cooperation related to cellulose degradation. Our work should deepen the understanding of microbial roles in plant fermentation and provide a new viewpoint for applying microbial consortia to convert plant organic components to small molecules.
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Affiliation(s)
- Jiemeng Tao
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, 450001, China
| | - Qiansi Chen
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, 450001, China
| | - Shanyi Chen
- Technology Center, China Tobacco Fujian Industrial Co., Ltd., Xiamen, 361000, China
| | - Peng Lu
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, 450001, China
| | - Yiqiang Chen
- Technology Center, China Tobacco Fujian Industrial Co., Ltd., Xiamen, 361000, China
| | - Jingjing Jin
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, 450001, China
| | - Jingjing Li
- Technology Center, China Tobacco Fujian Industrial Co., Ltd., Xiamen, 361000, China
| | - Yalong Xu
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, 450001, China
| | - Wei He
- Technology Center, China Tobacco Fujian Industrial Co., Ltd., Xiamen, 361000, China
| | - Teng Long
- Technology Center, China Tobacco Fujian Industrial Co., Ltd., Xiamen, 361000, China
| | - Xiaohua Deng
- Technology Center, China Tobacco Fujian Industrial Co., Ltd., Xiamen, 361000, China
| | - Huaqun Yin
- School of Minerals Processing and Bioengineering, Central South University, Changsha, 410083, China
| | - Zefeng Li
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, 450001, China
| | - Jianqiang Fan
- Technology Center, China Tobacco Fujian Industrial Co., Ltd., Xiamen, 361000, China.
| | - Peijian Cao
- China Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, 450001, China.
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11
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Purification of xylanases from Aureobasidium pullulans CCT 1261 and its application in the production of xylooligosaccharides. World J Microbiol Biotechnol 2022; 38:52. [DOI: 10.1007/s11274-022-03240-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Accepted: 01/31/2022] [Indexed: 11/27/2022]
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12
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Lekshmi Sundar MS, Madhavan Nampoothiri K. An overview of the metabolically engineered strains and innovative processes used for the value addition of biomass derived xylose to xylitol and xylonic acid. BIORESOURCE TECHNOLOGY 2022; 345:126548. [PMID: 34906704 DOI: 10.1016/j.biortech.2021.126548] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/27/2021] [Revised: 12/06/2021] [Accepted: 12/07/2021] [Indexed: 06/14/2023]
Abstract
Xylose, the most abundant pentose sugar of the hemicellulosic fraction of lignocellulosic biomass, has to be utilized rationally for the commercial viability of biorefineries. An effective pre-treatment strategy for the release of xylose from the biomass and an appropriate microbe of the status of an Industrial strain for the utilization of this pentose sugar are key challenges which need special attention for the economic success of the biomass value addition to chemicals. Xylitol and xylonic acid, the alcohol and acid derivatives of xylose are highly demanded commodity chemicals globally with plenty of applications in the food and pharma industries. This review emphasis on the natural and metabolically engineered strains utilizing xylose and the progressive and innovative fermentation strategies for the production and subsequent recovery of the above said chemicals from pre-treated biomass medium.
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Affiliation(s)
- M S Lekshmi Sundar
- Microbial Processes and Technology Division, CSIR - National Institute for Interdisciplinary Science and Technology (NIIST), Thiruvananthapuram 695019, Kerala, India; Academy of Scientific and Innovative Research (AcSIR), CSIR-HRDG Campus, Ghaziabad, Uttar Pradesh 201002, India
| | - K Madhavan Nampoothiri
- Microbial Processes and Technology Division, CSIR - National Institute for Interdisciplinary Science and Technology (NIIST), Thiruvananthapuram 695019, Kerala, India.
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13
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Liu Y, Xu L, Zhang Z, Huang Z, Fang D, Zheng X, Yang Z, Lu M. Isolation, Identification, and Analysis of Potential Functions of Culturable Bacteria Associated with an Invasive Gall Wasp, Leptocybe invasa. MICROBIAL ECOLOGY 2022; 83:151-166. [PMID: 33758980 DOI: 10.1007/s00248-021-01715-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2020] [Accepted: 02/07/2021] [Indexed: 05/17/2023]
Abstract
Symbioses between invasive insects and bacteria are one of the key drivers of insect invasion success. Gall-inducing insects stimulate host plants to produce galls, which affects the normal growth of plants. Leptocybe invasa Fisher et La Salle, an invasive gall-inducing wasp, mainly damages Eucalyptus plantations in Southern China, but little is known about its associated bacteria. The aim of this study was to assess the diversity of bacterial communities at different developmental stages of L. invasa and to identify possible ecological functions of the associated bacteria. Bacteria associated with L. invasa were isolated using culture-dependent methods and their taxonomic statuses were determined by sequencing the 16S rRNA gene. A total of 88 species belonging to four phyla, 27 families, and 44 genera were identified by phylogenetic analysis. The four phyla were Proteobacteria, Actinobacteria, Firmicutes, and Bacteroidetes, mainly from the genera Pantoea, Enterobacter, Pseudomonas, Bacillus, Acinetobacter, Curtobacterium, Sphingobium, Klebsiella, and Rhizobium. Among them, 72 species were isolated in the insect gall stage and 46 species were isolated from the adult stage. The most abundant bacterial species were γ-Proteobacteria. We found significant differences in total bacterial counts and community compositions at different developmental stages, and identified possible ecological roles of L. invasa-associated bacteria. This study is the first to systematically investigate the associated bacteria of L. invasa using culture-dependent methods, and provides a reference for other gall-inducing insects and associated bacteria.
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Affiliation(s)
- Yipeng Liu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Letian Xu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China
| | - Zhouqiong Zhang
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Zongyou Huang
- Guangxi Key Laboratory of Agric-Environment and Agric-Products Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture, Guangxi University, Nanning, China
| | - Dongxue Fang
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China
| | - Xialin Zheng
- Guangxi Key Laboratory of Agric-Environment and Agric-Products Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture, Guangxi University, Nanning, China
| | - Zhende Yang
- Guangxi Key Laboratory of Agric-Environment and Agric-Products Safety, National Demonstration Center for Experimental Plant Science Education, College of Agriculture, Guangxi University, Nanning, China
| | - Min Lu
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, China.
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China.
- State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.
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14
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Statistical optimization of saccharificaion of carbohydrate content of alkali pretreated sugarcane bagasse by enzyme cocktail produced by Bacillus vallismortis MH 1 and Bacillus aestuarii UE25. CARBOHYDRATE POLYMER TECHNOLOGIES AND APPLICATIONS 2021. [DOI: 10.1016/j.carpta.2021.100174] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
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15
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Stabilization and operational selectivity alteration of Lipozyme 435 by its coating with polyethyleneimine: Comparison of the biocatalyst performance in the synthesis of xylose fatty esters. Int J Biol Macromol 2021; 192:665-674. [PMID: 34656534 DOI: 10.1016/j.ijbiomac.2021.10.052] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Revised: 09/09/2021] [Accepted: 10/08/2021] [Indexed: 01/13/2023]
Abstract
Differently modified Lipozyme 435 (L435) (immobilized lipase B from Candida antarctica) preparations were used as biocatalysts in the esterification reaction to synthesize sugar fatty acid esters (SFAEs) from xylose (acyl acceptor) and lauric/palmitic acids (acyl donors) in methyl ethyl ketone (MEK) solvent. The L435 treatment with polyethyleneimine (PEI) (2; 25; and 750 KDa) prevented the enzyme leakage in the crude sugar ester reaction product. The 2 KDa PEI coating of this enzyme preparation produced the highest enzyme stability in MEK, buffer solutions (pHs 5 and 7), and methanol aqueous phosphate buffer at pH 7. Using an excess of the acyl donor (1:5 xylose: fatty acid molar ratio), high xylose conversions (70-84%) were obtained after 24 h-reaction using both, non-modified and PEI (2 KDa) coated L435, but the PEI treated biocatalyst afforded a higher xylose modification degree. After 5 reuse cycles with the L435 coated with PEI 2 KDa, the xylose conversions only decreased 10%, while with the non-treated biocatalyst they decreased by 37%. The formation of SFAEs was confirmed by mass spectrometry, which showed the presence of xylose mono-, di-, and triesters. They exhibited emulsion capacities close to that of a commercial sucrose monolaurate.
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Georgiadou DN, Avramidis P, Ioannou E, Hatzinikolaou DG. Microbial bioprospecting for lignocellulose degradation at a unique Greek environment. Heliyon 2021; 7:e07122. [PMID: 34141913 PMCID: PMC8187967 DOI: 10.1016/j.heliyon.2021.e07122] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2020] [Revised: 01/24/2021] [Accepted: 05/18/2021] [Indexed: 11/30/2022] Open
Abstract
Bacterial systems have gained wide attention for depolymerization of lignocellulosic biomass, due to their high functional diversity and adaptability. To achieve the full microbial exploitation of lignocellulosic residues and the cost-effective production of bioproducts within a biorefinery, multiple metabolic pathways and enzymes of various specificities are required. In this work, highly diverse aerobic, mesophilic bacteria enriched from Keri Lake, a pristine marsh of increased biomass degradation and natural underground oil leaks, were explored for their metabolic versatility and enzymatic potential towards lignocellulosic substrates. A high number of Pseudomonas species, obtained from enrichment cultures where organosolv lignin served as the sole carbon and energy source, were able to assimilate a range of lignin-associated aromatic compounds. Comparatively more complex bacterial consortia, including members of Actinobacteria, Proteobacteria, Bacilli, Sphingobacteria, and Flavobacteria, were also enriched from cultures with xylan or carboxymethyl cellulose as sole carbon sources. Numerous individual isolates could target diverse structural lignocellulose polysaccharides by expressing hydrolytic activities on crystalline or amorphous cellulose and xylan. Specific isolates showed increased potential for growth in lignin hydrolysates prepared from alkali pretreated agricultural wastes. The results suggest that Keri isolates represent a pool of effective lignocellulose degraders with significant potential for industrial applications in a lignocellulose biorefinery.
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Affiliation(s)
- Daphne N. Georgiadou
- Enzyme and Microbial Biotechnology Unit, Department of Biology, National and Kapodistrian University of Athens, Zografou Campus, 15784, Athens, Greece
| | - Pavlos Avramidis
- Laboratory of Sedimentology, Department of Geology, University of Patras, 26504, Rio-Patra, Greece
| | - Efstathia Ioannou
- Section of Pharmacognosy and Chemistry of Natural Products, Department of Pharmacy, National and Kapodistrian University of Athens, Panepistimiopolis Zografou, 15771, Athens, Greece
| | - Dimitris G. Hatzinikolaou
- Enzyme and Microbial Biotechnology Unit, Department of Biology, National and Kapodistrian University of Athens, Zografou Campus, 15784, Athens, Greece
- Corresponding author.
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17
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Co R, Hug LA. Prediction, enrichment and isolation identify a responsive, competitive community of cellulolytic microorganisms from a municipal landfill. FEMS Microbiol Ecol 2021; 97:6261183. [PMID: 33930130 DOI: 10.1093/femsec/fiab065] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Accepted: 04/27/2021] [Indexed: 01/04/2023] Open
Abstract
Landfills are engineered, heterogeneously contaminated sites containing large reservoirs of paper waste. Cellulose degradation is an important process within landfill microbial ecology, and these anoxic, saturated environments are prime locations for discovery of cellulases that may offer improvements on industrial cellulose degradation efforts. We sampled leachate from three locations within a municipal landfill, a leachate collection cistern, and groundwater from an adjacent aquifer to identify cellulolytic populations and their associated cellulases. Metagenomic sequencing identified wide-spread and taxonomically diverse cellulolytic potential, with a notable scarcity of predicted exocellulases. 16S rRNA amplicon sequencing detected nine landfill microorganisms enriched in a customized leachate medium amended with microcrystalline cellulose or common paper stocks. Paper-enrichment cultures showed competition dynamics in response to the specific composition (lignin: hemi-cellulose: cellulose) of the different paper stocks. From leachate biomass, four novel cellulolytic bacteria were isolated, including two with the capacity for cellulolysis at industrially relevant temperatures. None of the isolates demonstrated exocellulase activity, consistent with the metagenome-based predictions. However, there was very little overlap between metagenome-derived predicted cellulolytic organisms, organisms enriched on paper sources, or the isolates, suggesting the landfill cellulolytic community is at low abundance but able to rapidly respond to introduced substrates.
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Affiliation(s)
- Rebecca Co
- Dapartment of Biology, University of Waterloo, 200 University Ave, Waterloo, ON, N2L3G1, Canada
| | - Laura A Hug
- Dapartment of Biology, University of Waterloo, 200 University Ave, Waterloo, ON, N2L3G1, Canada
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18
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Rajeswari G, Jacob S, Chandel AK, Kumar V. Unlocking the potential of insect and ruminant host symbionts for recycling of lignocellulosic carbon with a biorefinery approach: a review. Microb Cell Fact 2021; 20:107. [PMID: 34044834 PMCID: PMC8161579 DOI: 10.1186/s12934-021-01597-0] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Accepted: 05/17/2021] [Indexed: 12/02/2022] Open
Abstract
Uprising fossil fuel depletion and deterioration of ecological reserves supply have led to the search for alternative renewable and sustainable energy sources and chemicals. Although first generation biorefinery is quite successful commercially in generating bulk of biofuels globally, the food versus fuel debate has necessitated the use of non-edible feedstocks, majorly waste biomass, for second generation production of biofuels and chemicals. A diverse class of microbes and enzymes are being exploited for biofuels production for a series of treatment process, however, the conversion efficiency of wide range of lignocellulosic biomass (LCB) and consolidated way of processing remains challenging. There were lot of research efforts in the past decade to scour for potential microbial candidate. In this context, evolution has developed the gut microbiota of several insects and ruminants that are potential LCB degraders host eco-system to overcome its host nutritional constraints, where LCB processed by microbiomes pretends to be a promising candidate. Synergistic microbial symbionts could make a significant contribution towards recycling the renewable carbon from distinctly abundant recalcitrant LCB. Several studies have assessed the bioprospection of innumerable gut symbionts and their lignocellulolytic enzymes for LCB degradation. Though, some reviews exist on molecular characterization of gut microbes, but none of them has enlightened the microbial community design coupled with various LCB valorization which intensifies the microbial diversity in biofuels application. This review provides a deep insight into the significant breakthroughs attained in enrichment strategy of gut microbial community and its molecular characterization techniques which aids in understanding the holistic microbial community dynamics. Special emphasis is placed on gut microbial role in LCB depolymerization strategies to lignocellulolytic enzymes production and its functional metagenomic data mining eventually generating the sugar platform for biofuels and renewable chemicals production.
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Affiliation(s)
- Gunasekaran Rajeswari
- Department of Biotechnology, School of Bioengineering, College of Engineering and Technology, Faculty of Engineering and Technology, SRM Institute of Science and Technology, SRM Nagar, Chengalpattu Dist. , Kattankulathur, 603203, Tamil Nadu, India
| | - Samuel Jacob
- Department of Biotechnology, School of Bioengineering, College of Engineering and Technology, Faculty of Engineering and Technology, SRM Institute of Science and Technology, SRM Nagar, Chengalpattu Dist. , Kattankulathur, 603203, Tamil Nadu, India.
| | - Anuj Kumar Chandel
- Department of Biotechnology, Engineering School of Lorena (EEL), University of São Paulo, Lorena, 12.602.810, Brazil
| | - Vinod Kumar
- School of Water, Energy and Environment, Cranfield University, Cranfield, MK43 0AL, UK.
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19
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Hunter SM, Blanco E, Borrion A. Expanding the anaerobic digestion map: A review of intermediates in the digestion of food waste. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 767:144265. [PMID: 33422959 DOI: 10.1016/j.scitotenv.2020.144265] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Revised: 11/30/2020] [Accepted: 12/02/2020] [Indexed: 06/12/2023]
Abstract
Anaerobic digestion is a promising technology as a renewable source of energy products, but these products have low economic value and process control is challenging. Identifying intermediates formed throughout the process could enhance understanding and offer opportunities for improved monitoring, control, and valorisation. In this review, intermediates present in the anaerobic digestion process are identified and discussed, including the following: volatile fatty acids, carboxylic acid, amino acids, furans, terpenes and phytochemicals. The key limitations associated with exploiting these intermediates are also addressed including challenging mixed cultures of microbiology, complex feedstocks, and difficult extraction and separation techniques.
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Affiliation(s)
- Sarah M Hunter
- Department of Civil, Environmental and Geomatic Engineering, University College London, UK
| | - Edgar Blanco
- Anaero Technology Limited, Cowley Road, Cambridge, UK
| | - Aiduan Borrion
- Department of Civil, Environmental and Geomatic Engineering, University College London, UK.
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20
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Bacterial valorization of pulp and paper industry process streams and waste. Appl Microbiol Biotechnol 2021; 105:1345-1363. [PMID: 33481067 DOI: 10.1007/s00253-021-11107-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Revised: 12/28/2020] [Accepted: 01/08/2021] [Indexed: 10/22/2022]
Abstract
The pulp and paper industry is a major source of lignocellulose-containing streams. The components of lignocellulose material are lignin, hemicellulose, and cellulose that may be hydrolyzed into their smaller components and used as feedstocks for valorization efforts. Much of this material is contained in underutilized streams and waste products, such as black liquor, pulp and paper sludge, and wastewater. Bacterial fermentation strategies have suitable potential to upgrade lignocellulosic biomass contained in these streams to value-added chemicals. Bacterial conversion allows for a sustainable and economically feasible approach to valorizing these streams, which can bolster and expand applications of the pulp and paper industry. This review discusses the composition of pulp and paper streams, bacterial isolates from process streams that can be used for lignocellulose biotransformations, and technological approaches for improving valorization efforts. KEY POINTS: • Reviews the conversion of pulp and paper industry waste by bacterial isolates. • Metabolic pathways for the breakdown of lignocellulose components. • Methods for isolating bacteria, determining value-added products, and increasing product yields.
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21
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Alahuhta M, Xu Q, Knoshaug EP, Wang W, Wei H, Amore A, Baker JO, Vander Wall T, Himmel ME, Zhang M. Chimeric cellobiohydrolase I expression, activity, and biochemical properties in three oleaginous yeast. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:6. [PMID: 33407766 PMCID: PMC7789491 DOI: 10.1186/s13068-020-01856-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2020] [Accepted: 12/10/2020] [Indexed: 05/16/2023]
Abstract
Consolidated bioprocessing using oleaginous yeast is a promising modality for the economic conversion of plant biomass to fuels and chemicals. However, yeast are not known to produce effective biomass degrading enzymes naturally and this trait is essential for efficient consolidated bioprocessing. We expressed a chimeric cellobiohydrolase I gene in three different oleaginous, industrially relevant yeast: Yarrowia lipolytica, Lipomyces starkeyi, and Saccharomyces cerevisiae to study the biochemical and catalytic properties and biomass deconstruction potential of these recombinant enzymes. Our results showed differences in glycosylation, surface charge, thermal and proteolytic stability, and efficacy of biomass digestion. L. starkeyi was shown to be an inferior active cellulase producer compared to both the Y. lipolytica and S. cerevisiae enzymes, whereas the cellulase expressed in S. cerevisiae displayed the lowest activity against dilute-acid-pretreated corn stover. Comparatively, the chimeric cellobiohydrolase I enzyme expressed in Y. lipolytica was found to have a lower extent of glycosylation, better protease stability, and higher activity against dilute-acid-pretreated corn stover.
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Affiliation(s)
- Markus Alahuhta
- Biosciences Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA.
| | - Qi Xu
- Biosciences Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA
| | - Eric P Knoshaug
- Biosciences Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA
| | - Wei Wang
- Biosciences Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA
| | - Hui Wei
- Biosciences Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA
| | - Antonella Amore
- Biosciences Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA
| | - John O Baker
- Biosciences Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA
| | - Todd Vander Wall
- Biosciences Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA
| | - Michael E Himmel
- Biosciences Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA
| | - Min Zhang
- Biosciences Center, National Renewable Energy Laboratory, Golden, CO, 80401, USA.
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22
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A Need for Improved Cellulase Identification from Metagenomic Sequence Data. Appl Environ Microbiol 2020; 87:AEM.01928-20. [PMID: 33067195 DOI: 10.1128/aem.01928-20] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Improved sequencing technologies and the maturation of metagenomic approaches allow the identification of gene variants with potential industrial applications, including cellulases. Cellulase identification from metagenomic environmental surveys is complicated by inconsistent nomenclature and multiple categorization systems. Here, we summarize the current classification and nomenclature systems, with recommendations for improvements to these systems. Addressing the issues described will strengthen the annotation of cellulose-active enzymes from environmental sequence data sets-a rapidly growing resource in environmental and applied microbiology.
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23
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Potential use of black liquor as lignin source for synthesis of polyurethane foam. JOURNAL OF POLYMER RESEARCH 2020. [DOI: 10.1007/s10965-020-02334-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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24
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Ahmad T, Sharma A, Gupta G, Mansoor S, Jan S, Kaur B, Paray BA, Ahmad A. Response surface optimization of cellulase production from Aneurinibacillus aneurinilyticus BKT-9: An isolate of urban Himalayan freshwater. Saudi J Biol Sci 2020; 27:2333-2343. [PMID: 32884415 PMCID: PMC7451742 DOI: 10.1016/j.sjbs.2020.04.036] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2020] [Revised: 04/12/2020] [Accepted: 04/19/2020] [Indexed: 11/16/2022] Open
Abstract
Due to their vast industrial potential, cellulases have been regarded as the potential biocatalysts by both the academicians and the industrial research groups. In the present study, culturable bacterial strains of Himalayan Urban freshwater lake were investigated for cellulose degrading activities. Initially, a total of 140 bacterial strains were isolated and only 45 isolates were found to possess cellulose degrading property. On the basis of preliminary screening involving cellulase activity assay on CMC agar (with clear zone of hydrolysis) and biosafety assessment testing, only single isolate named as BKT-9 was selected for the cellulase production studies. Strain BKT-9 was characterized at the molecular level using rRNA gene sequencing and its sequence homology analysis revealed its identity as Aneurinibacillus aneurinilyticus. Further, various physico-chemical parameters and culture conditions were optimized using one factor approach to enhance cellulase production levels in the strain BKT-9. Subsequently, RSM based statistical optimization led to formulation of cellulase production medium, wherein the bacterial strain exhibited ~60 folds increase in enzyme activity as compared to un-optimized culture medium. Further studies are being suggested to scale up cellulase production in A. aneurinilyticus strain BKT-9 so that it can be utilized for biomass saccharification at an industrial level.
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Affiliation(s)
- Tawseef Ahmad
- Department of Biotechnology, Punjabi University Patiala, Punjab 147002, India
| | - Anshula Sharma
- Department of Biotechnology, Punjabi University Patiala, Punjab 147002, India
| | - Gaganjot Gupta
- Department of Biotechnology, Punjabi University Patiala, Punjab 147002, India
| | | | - Sumira Jan
- Division of Biochemistry, SKUAST Kashmir, 190025, India
| | - Baljinder Kaur
- Department of Biotechnology, Punjabi University Patiala, Punjab 147002, India
| | - Bilal Ahmad Paray
- Department of Zoology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Ajaz Ahmad
- Department of Clinical Pharmacy, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia
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25
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Muaaz-Us-Salam S, Cleall PJ, Harbottle MJ. Application of enzymatic and bacterial biodelignification systems for enhanced breakdown of model lignocellulosic wastes. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 728:138741. [PMID: 32339836 DOI: 10.1016/j.scitotenv.2020.138741] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2020] [Revised: 04/14/2020] [Accepted: 04/14/2020] [Indexed: 06/11/2023]
Abstract
This paper explores the extent to which enzymatic and bacterial biodelignification systems can breakdown lignocellulose in model wastes to potentially enhance biogas generation. Two representative lignocellulosic wastes (newspaper and softwood) commonly found largely undegraded in old landfills were used. A fungal peroxidase (lignin peroxidase) enzyme and a recently isolated lignin-degrading bacterial strain (Agrobacterium sp.) were used. Tests were conducted in stirred bioreactors with methanogens from sewage sludge added to produce biogas from breakdown products. Addition of lignin peroxidase resulted in ~20% enhancement in cumulative methane produced in newspaper reactors. It had a negative effect on wood. Agrobacterium sp. strain enhanced biodegradation of both wood (~20% higher release of soluble organic carbon and enhanced breakdown) and newspaper (~2-fold biogas yield). The findings of this paper have important implications for enhanced breakdown in old landfills that are rich in these wastes, and anaerobic operations utilising lignocellulosic wastes for higher degradation efficiencies and biogas production.
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26
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Chen Q, Wu W, Qi D, Ding Y, Zhao Z. Review on microaeration-based anaerobic digestion: State of the art, challenges, and prospectives. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 710:136388. [PMID: 31923694 DOI: 10.1016/j.scitotenv.2019.136388] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2019] [Revised: 12/26/2019] [Accepted: 12/26/2019] [Indexed: 06/10/2023]
Abstract
Microaeration (dosing small quantities of air or oxygen) is an effective approach to facilitate anaerobic digestion (AD) process and has gained increased attention in recent years. The underlying mechanisms of the facilitation effect of microaeration on AD process were reviewed in terms of accelerating hydrolysis, scavenging hydrogen sulfide, and affecting microbial diversity. Process parameters and control strategies were summarized to reveal considerable factors in implementing microaeration-based AD process. In addition, current applications, including lab-, pilot- and full-scale level cases, were summarized to provide guidance for further improvement in large-scale applications. The challenges and future perspectives were also highlighted to promote the development of AD process associated with microaeration.
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Affiliation(s)
- Qing Chen
- Marine Engineering College, Dalian Maritime University, Dalian 116026, PR China
| | - Wanqing Wu
- Marine Engineering College, Dalian Maritime University, Dalian 116026, PR China.
| | - Dacheng Qi
- Marine Engineering College, Dalian Maritime University, Dalian 116026, PR China
| | - Yihong Ding
- Marine Engineering College, Dalian Maritime University, Dalian 116026, PR China
| | - Zihao Zhao
- Marine Engineering College, Dalian Maritime University, Dalian 116026, PR China
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27
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Isolation, identification and characterization of soil bacteria for the production of ferulic acid through co-culture fermentation using banana stem waste. SN APPLIED SCIENCES 2020. [DOI: 10.1007/s42452-020-2151-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022] Open
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28
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High-throughput screening of environmental polysaccharide-degrading bacteria using biomass containment and complex insoluble substrates. Appl Microbiol Biotechnol 2020; 104:3379-3389. [PMID: 32114675 PMCID: PMC7089899 DOI: 10.1007/s00253-020-10469-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2019] [Revised: 12/12/2019] [Accepted: 02/12/2020] [Indexed: 11/08/2022]
Abstract
Carbohydrate degradation by microbes plays an important role in global nutrient cycling, human nutrition, and biotechnological applications. Studies that focus on the degradation of complex recalcitrant polysaccharides are challenging because of the insolubility of these substrates as found in their natural contexts. Specifically, current methods to examine carbohydrate-based biomass degradation using bacterial strains or purified enzymes are not compatible with high-throughput screening using complex insoluble materials. In this report, we developed a small 3D printed filter device that fits inside a microplate well that allows for the free movement of bacterial cells, media, and enzymes while containing insoluble biomass. These devices do not interfere with standard microplate readers and can be used for both short- (24–48 h) and long-duration (> 100 h) experiments using complex insoluble substrates. These devices were used to quantitatively screen in a high-throughput manner environmental isolates for their ability to grow using lignocellulose or rice grains as a sole nutrient source. Additionally, we determined that the microplate-based containment devices are compatible with existing enzymatic assays to measure activity against insoluble biomass. Overall, these microplate containment devices provide a platform to study the degradation of complex insoluble materials in a high-throughput manner and have the potential to help uncover ecologically important aspects of bacterial metabolism as well as to accelerate biotechnological innovation.
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Ghosh T, Chen J, Kumar A, Tang T, Ayranci C. Bio-cleaning improves the mechanical properties of lignin-based carbon fibers. RSC Adv 2020; 10:22983-22995. [PMID: 35520319 PMCID: PMC9054643 DOI: 10.1039/d0ra03412f] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Accepted: 06/03/2020] [Indexed: 11/21/2022] Open
Abstract
Production of carbon fibers (CF) using renewable precursors has gained importance particularly in the last decade to reduce the dependency on conventional petroleum-based precursors. However, pre-treatment of these renewable precursors is still similar to that of conventional ones. Little work is put into greener pre-treatments and their effects on the end products. This work focuses on the use of bio-cleaned lignin as a green precursor to produce CF by electrospinning. Bio-cleaned kraft lignin A (Bio-KLA) and uncleaned kraft lignin A (KLA) were used to explore the effect of bio-cleaning on the diameter and mechanical properties of lignin fibers and CF. The effect of electric field, lignin-to-poly(ethylene oxide) (PEO) ratio and PEO molecular weight (MW) were evaluated by 33 factorial design using Design of Experiment (DOE). The electrospinning process parameters were optimized to obtain a balance between high elastic modulus and small fiber diameter. The model predicted optimized conditions were 50 kV m−1 electric field, 95/5 lignin-to-PEO ratio and 1000 kDa MW of PEO. When compared to KLA, Bio-KLA CFs showed a 2.7-fold increase in elastic modulus, 2-fold increase in tensile strength and 30% decrease in fiber diameter under the same optimum conditions. The results clearly show that bio-cleaning improved the mechanical properties of lignin derived CF. Waste lignin (KLA) and bio-cleaned lignin (Bio-KLA) precursors, used to produce parameter-optimized-electrospun carbon fibers showed improved mechanical properties for Bio-KLA.![]()
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Affiliation(s)
- Tanushree Ghosh
- Department of Mechanical Engineering
- University of Alberta
- Edmonton
- Canada
| | - Jiawei Chen
- Department of Mechanical Engineering
- University of Alberta
- Edmonton
- Canada
| | - Aloke Kumar
- Department of Mechanical Engineering
- Indian Institute of Science
- Bangalore
- India
| | - Tian Tang
- Department of Mechanical Engineering
- University of Alberta
- Edmonton
- Canada
| | - Cagri Ayranci
- Department of Mechanical Engineering
- University of Alberta
- Edmonton
- Canada
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Gomez-Martin A, Martinez-Fernandez J, Ruttert M, Winter M, Placke T, Ramirez-Rico J. Porous Graphene-like Carbon from Fast Catalytic Decomposition of Biomass for Energy Storage Applications. ACS OMEGA 2019; 4:21446-21458. [PMID: 31867540 PMCID: PMC6921631 DOI: 10.1021/acsomega.9b03142] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Accepted: 11/18/2019] [Indexed: 06/10/2023]
Abstract
A novel carbon material made of porous graphene-like nanosheets was synthesized from biomass resources by a simple catalytic graphitization process using nickel as a catalyst for applications in electrodes for energy storage devices. A recycled fiberboard precursor was impregnated with saturated nickel nitrate followed by high-temperature pyrolysis. The highly exothermic combustion of in situ formed nitrocellulose produces the expansion of the cellulose fibers and the reorganization of the carbon structure into a three-dimensional (3D) porous assembly of thin carbon nanosheets. After acid washing, nickel particles are fully removed, leaving nanosized holes in the wrinkled graphene-like sheets. These nanoholes confer the resulting carbon material with ≈75% capacitance retention, when applied as a supercapacitor electrode in aqueous media at a specific current of 100 A·g-1 compared to the capacitance reached at 20 mA·g-1, and ≈35% capacity retention, when applied as a negative electrode for lithium-ion battery cells at a specific current of 3720 mA·g-1 compared to the specific capacity at 37.2 mA·g-1. These findings suggest a novel way for synthesizing 3D nanocarbon networks from a cellulosic precursor requiring low temperatures and being amenable to large-scale production while using a sustainable starting precursor such as recycled fiberwood.
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Affiliation(s)
- Aurora Gomez-Martin
- Dpto.
Física de la Materia Condensada, Universidad de Sevilla, Avda. Reina Mercedes SN, 41012 Sevilla, Spain
- Instituto
de Ciencia de Materiales de Sevilla (CSIC-Univ. Sevilla), Avda. Américo Vespucio 49, 41092 Sevilla, Spain
| | - Julian Martinez-Fernandez
- Dpto.
Física de la Materia Condensada, Universidad de Sevilla, Avda. Reina Mercedes SN, 41012 Sevilla, Spain
- Instituto
de Ciencia de Materiales de Sevilla (CSIC-Univ. Sevilla), Avda. Américo Vespucio 49, 41092 Sevilla, Spain
| | - Mirco Ruttert
- MEET
Battery Research Center, Institute of Physical Chemistry, University of Münster, Corrensstraße 46, 48149 Münster, Germany
| | - Martin Winter
- MEET
Battery Research Center, Institute of Physical Chemistry, University of Münster, Corrensstraße 46, 48149 Münster, Germany
- Helmholtz
Institute Münster, IEK-12, Forschungszentrum Jülich
GmbH, Corrensstraße
46, 48149 Münster, Germany
| | - Tobias Placke
- MEET
Battery Research Center, Institute of Physical Chemistry, University of Münster, Corrensstraße 46, 48149 Münster, Germany
| | - Joaquin Ramirez-Rico
- Dpto.
Física de la Materia Condensada, Universidad de Sevilla, Avda. Reina Mercedes SN, 41012 Sevilla, Spain
- Instituto
de Ciencia de Materiales de Sevilla (CSIC-Univ. Sevilla), Avda. Américo Vespucio 49, 41092 Sevilla, Spain
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López-Mondéjar R, Algora C, Baldrian P. Lignocellulolytic systems of soil bacteria: A vast and diverse toolbox for biotechnological conversion processes. Biotechnol Adv 2019; 37:107374. [DOI: 10.1016/j.biotechadv.2019.03.013] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Revised: 03/06/2019] [Accepted: 03/21/2019] [Indexed: 12/12/2022]
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Nawaz A, Mukhtar H, ul Haq I, Mazhar Z, Mumtaz MW. Laccase: An Environmental Benign Pretreatment Agent for Efficient Bioconversion of Lignocellulosic Residues to Bioethanol. CURR ORG CHEM 2019. [DOI: 10.2174/1385272823666190722163046] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Abrupt urbanization and industrialization around the world resulted in elevated environmental pollution and depletion of natural energy resources. An eco-friendly and economical alternative for energy production is the need of an hour. This can be achieved by converting the waste material into energy. One such waste is lignocellulosic agricultural residues, produced in billions of tons every year all around the world, which can be converted into bioethanol. The main challenge in this bioconversion is the recalcitrant nature of lignocellulosic material. The removal of cementing material is lignin and to overcome the potential inhibitors produced during the disintegration of lignin is the challenging task for biotechnologist. This task can be achieved by a number of different methods but laccase is the most effective and eco-friendly method that can be used for effective removal of lignin along with the increase the accessibility of cellulose and bioethanol yield.
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Affiliation(s)
- Ali Nawaz
- Institute of Industrial Biotechnology, GC University, Lahore, Pakistan
| | - Hamid Mukhtar
- Institute of Industrial Biotechnology, GC University, Lahore, Pakistan
| | - Ikram ul Haq
- Institute of Industrial Biotechnology, GC University, Lahore, Pakistan
| | - Zainab Mazhar
- Institute of Industrial Biotechnology, GC University, Lahore, Pakistan
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Thermoalkaliphilic laccase treatment for enhanced production of high-value benzaldehyde chemicals from lignin. Int J Biol Macromol 2019; 124:200-208. [DOI: 10.1016/j.ijbiomac.2018.11.144] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Revised: 11/12/2018] [Accepted: 11/14/2018] [Indexed: 01/29/2023]
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Mathews SL, Epps MJ, Blackburn RK, Goshe MB, Grunden AM, Dunn RR. Public questions spur the discovery of new bacterial species associated with lignin bioconversion of industrial waste. ROYAL SOCIETY OPEN SCIENCE 2019; 6:180748. [PMID: 31031986 PMCID: PMC6458430 DOI: 10.1098/rsos.180748] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Accepted: 02/07/2019] [Indexed: 05/04/2023]
Abstract
A citizen science project found that the greenhouse camel cricket (Diestrammena asynamora) is common in North American homes. Public response was to wonder 'what good are they anyway?' and ecology and evolution guided the search for potential benefit. We predicted that camel crickets and similar household species would likely host bacteria with the ability to degrade recalcitrant carbon compounds. Lignocellulose is particularly relevant as it is difficult to degrade yet is an important feedstock for pulp and paper, chemical and biofuel industries. We screened gut bacteria of greenhouse camel crickets and another household insect, the hide beetle (Dermestes maculatus) for the ability to grow on and degrade lignocellulose components as well as the lignocellulose-derived industrial waste product black liquor. From three greenhouse camel crickets and three hide beetles, 14 bacterial strains were identified that were capable of growth on lignocellulosic components, including lignin. Cedecea lapagei was selected for further study due to growth on most lignocellulose components. The C. lapagei secretome was identified using LC/MS/MS analysis. This work demonstrates a novel source of lignocellulose-degrading bacteria and introduces an effective workflow to identify bacterial enzymes for transforming industrial waste into value-added products. More generally, our research suggests the value of ecologically guided discovery of novel organisms.
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Affiliation(s)
- Stephanie L. Mathews
- Department of Biological Sciences, Campbell University, Buies Creek, NC 27506, USA
| | - Mary Jane Epps
- Department of Biology, Mary Baldwin University, Staunton, VA 24401, USA
| | - R. Kevin Blackburn
- Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, NC 27695, USA
| | - Michael B. Goshe
- Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, NC 27695, USA
| | - Amy M. Grunden
- Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27695, USA
| | - Robert R. Dunn
- Department of Applied Ecology, North Carolina State University, Raleigh, NC 27695, USA
- Center for Macroecology, Evolution and Climate, University of Copenhagen, Copenhagen, 2100Denmark
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Nguyen D, Khanal SK. A little breath of fresh air into an anaerobic system: How microaeration facilitates anaerobic digestion process. Biotechnol Adv 2018; 36:1971-1983. [DOI: 10.1016/j.biotechadv.2018.08.007] [Citation(s) in RCA: 69] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2018] [Revised: 08/07/2018] [Accepted: 08/20/2018] [Indexed: 10/28/2022]
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Chandra R, Sharma P, Yadav S, Tripathi S. Biodegradation of Endocrine-Disrupting Chemicals and Residual Organic Pollutants of Pulp and Paper Mill Effluent by Biostimulation. Front Microbiol 2018; 9:960. [PMID: 29867864 PMCID: PMC5962716 DOI: 10.3389/fmicb.2018.00960] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2017] [Accepted: 04/24/2018] [Indexed: 11/30/2022] Open
Abstract
Effluent discharged from the pulp and paper industry contains various refractory and androgenic compounds, even after secondary treatment by activated processes. Detailed knowledge is not yet available regarding the properties of organic pollutants and methods for their bioremediation. This study focused on detecting residual organic pollutants of pulp and paper mill effluent after biological treatment and assessing their degradability by biostimulation. The major compounds identified in the effluent were 2,3,6-trimethylphenol, 2-methoxyphenol (guaiacol), 2,6-dimethoxyphenol (syringol), methoxycinnamic acid, pentadecane, octadecanoic acid, trimethylsilyl ester, cyclotetracosane, 5,8-dimethoxy-6-methyl-2,4-bis(phenylmethyl)napthalen-1-ol, and 1,2-benzendicarboxylic acid diisononyl ester. Most of these compounds are classified as endocrine-disrupting chemicals and environmental toxicants. Some compounds are lignin monomers that are metabolic products from secondary treatment of the discharged effluent. This indicated that the existing industrial process could not further degrade the effluent. Supplementation by carbon (glucose 1.0%) and nitrogen (peptone 0.5%) bio-stimulated the degradation process. The degraded sample after biostimulation showed either disappearance or generation of metabolic products under optimized conditions, i.e., a stirring rate of 150 rpm and temperature of 37 ± 1°C after 3 and 6 days of bacterial incubation. Isolated potential autochthonous bacteria were identified as Klebsiella pneumoniae IITRCP04 (KU715839), Enterobacter cloacae strain IITRCP11 (KU715840), Enterobacter cloacae IITRCP14 (KU715841), and Acinetobacter pittii strain IITRCP19 (KU715842). Lactic acid, benzoic acid, and vanillin, resulting from residual chlorolignin compounds, were generated as potential value-added products during the detoxification of effluent in the biostimulation process, supporting the commercial importance of this process.
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Affiliation(s)
- Ram Chandra
- Department of Environmental Microbiology, School for Environmental Sciences, B.B. Ambedkar Central University, Lucknow, India
| | - Pooja Sharma
- Department of Environmental Microbiology, School for Environmental Sciences, B.B. Ambedkar Central University, Lucknow, India
| | - Sangeeta Yadav
- Department of Environmental Microbiology, School for Environmental Sciences, B.B. Ambedkar Central University, Lucknow, India
| | - Sonam Tripathi
- Department of Environmental Microbiology, School for Environmental Sciences, B.B. Ambedkar Central University, Lucknow, India
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Zhang K, Si M, Liu D, Zhuo S, Liu M, Liu H, Yan X, Shi Y. A bionic system with Fenton reaction and bacteria as a model for bioprocessing lignocellulosic biomass. BIOTECHNOLOGY FOR BIOFUELS 2018; 11:31. [PMID: 29445420 PMCID: PMC5803899 DOI: 10.1186/s13068-018-1035-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Accepted: 01/27/2018] [Indexed: 05/25/2023]
Abstract
BACKGROUND The recalcitrance of lignocellulosic biomass offers a series of challenges for biochemical processing into biofuels and bio-products. For the first time, we address these challenges with a biomimetic system via a mild yet rapid Fenton reaction and lignocellulose-degrading bacterial strain Cupriavidus basilensis B-8 (here after B-8) to pretreat the rice straw (RS) by mimicking the natural fungal invasion process. Here, we also elaborated the mechanism through conducting a systematic study of physicochemical changes before and after pretreatment. RESULTS After synergistic Fenton and B-8 pretreatment, the reducing sugar yield was increased by 15.6-56.6% over Fenton pretreatment alone and 2.7-5.2 times over untreated RS (98 mg g-1). Morphological analysis revealed that pretreatment changed the surface morphology of the RS, and the increase in roughness and hydrophilic sites enhanced lignocellulose bioavailability. Chemical components analyses showed that B-8 removed part of the lignin and hemicellulose which caused the cellulose content to increase. In addition, the important chemical modifications also occurred in lignin, 2D NMR analysis of the lignin in residues indicated that the Fenton pretreatment caused partial depolymerization of lignin mainly by cleaving the β-O-4 linkages and by demethoxylation to remove the syringyl (S) and guaiacyl (G) units. B-8 could depolymerize amount of the G units by cleaving the β-5 linkages that interconnect the lignin subunits. CONCLUSIONS A biomimetic system with a biochemical Fenton reaction and lignocellulose-degrading bacteria was confirmed to be able for the pretreatment of RS to enhance enzymatic hydrolysis under mild conditions. The high digestibility was attributed to the destruction of the lignin structure, partial hydrolysis of the hemicellulose and partial surface oxidation of the cellulose. The mechanism of synergistic Fenton and B-8 pretreatment was also explored to understand the change in the RS and the bacterial effects on enzymatic hydrolysis. Furthermore, this biomimetic system offers new insights into the pretreatment of lignocellulosic biomass.
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Affiliation(s)
- Kejing Zhang
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
| | - Mengying Si
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
| | - Dan Liu
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
| | - Shengnan Zhuo
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
| | - Mingren Liu
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
| | - Hui Liu
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
| | - Xu Yan
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
| | - Yan Shi
- School of Metallurgy and Environment, Central South University, Changsha, 410083 People’s Republic of China
- Chinese National Engineering Research Center for Control & Treatment of Heavy Metal Pollution, Changsha, 410083 People’s Republic of China
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Ceballos SJ, Yu C, Claypool JT, Singer SW, Simmons BA, Thelen MP, Simmons CW, VanderGheynst JS. Development and characterization of a thermophilic, lignin degrading microbiota. Process Biochem 2017. [DOI: 10.1016/j.procbio.2017.08.018] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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39
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Biodegradation behavior and modelling of soil burial effect on degradation rate of PLA blended with starch and wood flour. Colloids Surf B Biointerfaces 2017; 159:800-808. [DOI: 10.1016/j.colsurfb.2017.08.056] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2017] [Accepted: 08/28/2017] [Indexed: 11/18/2022]
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Yim SS, Choi JW, Lee SH, Jeon EJ, Chung WJ, Jeong KJ. Engineering of Corynebacterium glutamicum for Consolidated Conversion of Hemicellulosic Biomass into Xylonic Acid. Biotechnol J 2017; 12. [PMID: 28799725 DOI: 10.1002/biot.201700040] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2017] [Revised: 08/05/2017] [Indexed: 12/12/2022]
Abstract
Xylonic acid is a promising platform chemical with various applications in the fields of food, pharmaceuticals, and agriculture. However, in the current process, xylonic acid is mainly produced by the conversion of xylose, whose preparation requires substantial cost and time. Here, Corynebacterium glutamicum is engineered for the consolidated bioconversion of hemicellulosic biomass (xylan) into xylonic acid in a single cultivation. First, for the efficient conversion of xylose to xylonic acid, xylose dehydrogenase (Xdh) and xylonolactonase (XylC) from Caulobacter crescentus are evaluated together with a previously optimized xylose transporter module (XylE of Escherichia coli), and cells expressing xdh and xylE genes with an optimized expression system can produce xylonic acid from xylose with 100% conversion yield. Next, to directly process xylan as a substrate, an engineered xylan-degrading module is introduced, in which two xylan-degrading enzymes (endoxylanase and xylosidase) are secreted into the culture medium. The engineered C. glutamicum successfully produce 6.23 g L-1 of xylonic acid from 20 g L-1 of xylan. This is the first report on xylonic acid production in C. glutamicum and this robust system will contribute to development of an industrially relevant platform for production of xylonic acid from raw biomass.
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Affiliation(s)
- Sung Sun Yim
- Department of Chemical and Biomolecular Engineering, BK21 Plus Program, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141,, Republic of Korea
| | - Jae Woong Choi
- Department of Chemical and Biomolecular Engineering, BK21 Plus Program, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141,, Republic of Korea
| | - Se Hwa Lee
- Department of Chemical and Biomolecular Engineering, BK21 Plus Program, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141,, Republic of Korea
| | - Eun Jung Jeon
- Department of Chemical and Biomolecular Engineering, BK21 Plus Program, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141,, Republic of Korea
| | - Wook-Jin Chung
- Energy and Environment Fusion Technology Center (E2FTC), Myongji University, Yongin City, Gyeonggi Province, Republic of Korea
| | - Ki Jun Jeong
- Department of Chemical and Biomolecular Engineering, BK21 Plus Program, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141,, Republic of Korea.,Institute for the BioCentury, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, 34141,, Republic of Korea
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Gong G, Kim S, Lee SM, Woo HM, Park TH, Um Y. Complete genome sequence of Bacillus sp. 275, producing extracellular cellulolytic, xylanolytic and ligninolytic enzymes. J Biotechnol 2017; 254:59-62. [DOI: 10.1016/j.jbiotec.2017.05.021] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2017] [Revised: 05/25/2017] [Accepted: 05/26/2017] [Indexed: 11/26/2022]
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Manganese-enhanced degradation of lignocellulosic waste by Phanerochaete chrysosporium: evidence of enzyme activity and gene transcription. Appl Microbiol Biotechnol 2017; 101:6541-6549. [DOI: 10.1007/s00253-017-8371-9] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2017] [Revised: 05/22/2017] [Accepted: 05/23/2017] [Indexed: 11/25/2022]
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Influences of Media Compositions on Characteristics of Isolated Bacteria Exhibiting Lignocellulolytic Activities from Various Environmental Sites. Appl Biochem Biotechnol 2017; 183:931-942. [PMID: 28405916 DOI: 10.1007/s12010-017-2474-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2017] [Accepted: 04/05/2017] [Indexed: 02/08/2023]
Abstract
Efficient isolation of lignocellulolytic bacteria is essential for the utilization of lignocellulosic biomass. In this study, bacteria with cellulolytic, xylanolytic, and lignolytic activities were isolated from environmental sites such as mountain, wetland, and mudflat using isolation media containing the combination of lignocellulose components (cellulose, xylan, and lignin). Eighty-nine isolates from the isolation media were characterized by analyzing taxonomic ranks and cellulolytic, xylanolytic, and lignolytic activities. Most of the cellulolytic bacteria showed multienzymatic activities including xylanolytic activity. The isolation media without lignin were efficient in isolating bacteria exhibiting multienzymatic activities even including lignolytic activity, whereas a lignin-containing medium was effective to isolate bacteria exhibiting lignolytic activity only. Multienzymatic activities were mainly observed in Bacillus and Streptomyces, while Burkholderia was the most abundant genus with lignolytic activity only. This study provides insight into isolation medium for efficient isolation of lignocellulose-degrading microorganisms.
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Ma J, Zhang K, Huang M, Hector SB, Liu B, Tong C, Liu Q, Zeng J, Gao Y, Xu T, Liu Y, Liu X, Zhu Y. Involvement of Fenton chemistry in rice straw degradation by the lignocellulolytic bacterium Pantoea ananatis Sd-1. BIOTECHNOLOGY FOR BIOFUELS 2016; 9:211. [PMID: 27761153 PMCID: PMC5054592 DOI: 10.1186/s13068-016-0623-x] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2016] [Accepted: 09/24/2016] [Indexed: 05/24/2023]
Abstract
BACKGROUND Lignocellulolytic bacteria have revealed to be a promising source for biofuel production, yet the underlying mechanisms are still worth exploring. Our previous study inferred that the highly efficient lignocellulose degradation by bacterium Pantoea ananatis Sd-1 might involve Fenton chemistry (Fe2+ + H2O2 + H+ → Fe3+ + OH· + H2O), similar to that of white-rot and brown-rot fungi. The aim of this work is to investigate the existence of this Fenton-based oxidation mechanism in the rice straw degradation process of P. ananatis Sd-1. RESULTS After 3 days incubation of unpretreated rice straw with P. ananatis Sd-1, the percentage in weight reduction of rice straw as well as its cellulose, hemicellulose, and lignin components reached 46.7, 43.1, 42.9, and 37.9 %, respectively. The addition of different hydroxyl radical scavengers resulted in a significant decline (P < 0.001) in rice straw degradation. Pyrolysis gas chromatography-mass spectrometry and Fourier transform infrared spectroscopy analysis revealed the consistency of chemical changes of rice straw components that exists between P. ananatis Sd-1 and Fenton reagent treatment. In addition to the increased total iron ion concentration throughout the rice straw decomposition process, the Fe3+-reducing capacity of P. ananatis Sd-1 was induced by rice straw and predominantly contributed by aromatic compounds metabolites. The transcript levels of the glucose-methanol-choline oxidoreductase gene related to hydrogen peroxide production were significantly up-regulated (at least P < 0.01) in rice straw cultures. Higher activities of GMC oxidoreductase and less hydrogen peroxide concentration in rice straw cultures relative to glucose cultures may be responsible for increasing rice straw degradation, which includes Fenton-like reactions. CONCLUSIONS Our results confirmed the Fenton chemistry-assisted degradation model in P. ananatis Sd-1. We are among the first to show that a Fenton-based oxidation mechanism exists in a bacteria degradation system, which provides a new perspective for how natural plant biomass is decomposed by bacteria. This degradative system may offer an alternative approach to the fungi system for lignocellulosic biofuels production.
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Affiliation(s)
- Jiangshan Ma
- Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, College of Biology, Hunan University, Changsha, 410008 Hunan People’s Republic of China
| | - Keke Zhang
- Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, College of Biology, Hunan University, Changsha, 410008 Hunan People’s Republic of China
| | - Mei Huang
- Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, College of Biology, Hunan University, Changsha, 410008 Hunan People’s Republic of China
| | - Stanton B. Hector
- Department of Genetics, Institute for Plant Biotechnology, Stellenbosch University, Private Bag X1, Matieland, 7602 South Africa
- DNA Sequencing Unit, Central Analytical Facility, Stellenbosch University, Private Bag X1, Matieland, 7602 South Africa
| | - Bin Liu
- Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, College of Biology, Hunan University, Changsha, 410008 Hunan People’s Republic of China
| | - Chunyi Tong
- Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, College of Biology, Hunan University, Changsha, 410008 Hunan People’s Republic of China
| | - Qian Liu
- Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, College of Biology, Hunan University, Changsha, 410008 Hunan People’s Republic of China
| | - Jiarui Zeng
- Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, College of Biology, Hunan University, Changsha, 410008 Hunan People’s Republic of China
| | - Yan Gao
- Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, College of Biology, Hunan University, Changsha, 410008 Hunan People’s Republic of China
| | - Ting Xu
- Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, College of Biology, Hunan University, Changsha, 410008 Hunan People’s Republic of China
| | - Ying Liu
- Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, College of Biology, Hunan University, Changsha, 410008 Hunan People’s Republic of China
| | - Xuanming Liu
- Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, College of Biology, Hunan University, Changsha, 410008 Hunan People’s Republic of China
| | - Yonghua Zhu
- Hunan Province Key Laboratory of Plant Functional Genomics and Developmental Regulation, College of Biology, Hunan University, Changsha, 410008 Hunan People’s Republic of China
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Sawatdeenarunat C, Nguyen D, Surendra KC, Shrestha S, Rajendran K, Oechsner H, Xie L, Khanal SK. Anaerobic biorefinery: Current status, challenges, and opportunities. BIORESOURCE TECHNOLOGY 2016; 215:304-313. [PMID: 27005786 DOI: 10.1016/j.biortech.2016.03.074] [Citation(s) in RCA: 64] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2016] [Revised: 03/11/2016] [Accepted: 03/12/2016] [Indexed: 05/22/2023]
Abstract
Anaerobic digestion (AD) has been in use for many decades. To date, it has been primarily aimed at treating organic wastes, mainly manures and wastewater sludge, and industrial wastewaters. However, with the current advancements, a more open mind is required to look beyond these somewhat restricted original applications of AD. Biorefineries are such concepts, where multiple products including chemicals, fuels, polymers etc. are produced from organic feedstocks. The anaerobic biorefinery concept is now gaining increased attention, utilizing AD as the final disposal step. This review aims at evaluating the potential significance of anaerobic biorefineries, including types of feedstocks, uses for the produced energy, as well as sustainable applications of the generated residual digestate. A comprehensive analysis of various types of anaerobic biorefineries has been developed, including both large-scale and household level applications. Finally, future directives are highlighted showing how anaerobic biorefinery concept could impact the bioeconomy in the near future.
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Affiliation(s)
- Chayanon Sawatdeenarunat
- Department of Molecular Biosciences and Bioengineering (MBBE), University of Hawai'i at Mānoa, 1955 East-West Road, Agricultural Science Building 218, Honolulu, HI 96822, USA
| | - Duc Nguyen
- Department of Molecular Biosciences and Bioengineering (MBBE), University of Hawai'i at Mānoa, 1955 East-West Road, Agricultural Science Building 218, Honolulu, HI 96822, USA
| | - K C Surendra
- Department of Molecular Biosciences and Bioengineering (MBBE), University of Hawai'i at Mānoa, 1955 East-West Road, Agricultural Science Building 218, Honolulu, HI 96822, USA
| | - Shilva Shrestha
- Department of Molecular Biosciences and Bioengineering (MBBE), University of Hawai'i at Mānoa, 1955 East-West Road, Agricultural Science Building 218, Honolulu, HI 96822, USA; Department of Civil and Environmental Engineering (CEE), University of Michigan Ann Arbor, 1351 Beal Ave., 107 EWRE Bldg, Ann Arbor, MI 48109-2125, USA
| | - Karthik Rajendran
- Department of Molecular Biosciences and Bioengineering (MBBE), University of Hawai'i at Mānoa, 1955 East-West Road, Agricultural Science Building 218, Honolulu, HI 96822, USA
| | - Hans Oechsner
- State Institute of Agricultural Engineering and Bioenergy, University of Hohenheim, Garbenstrasse 9, Stuttgart 70599, Germany
| | - Li Xie
- Department of Environmental Engineering, Tongji University, Shanghai 200092, PR China
| | - Samir Kumar Khanal
- Department of Molecular Biosciences and Bioengineering (MBBE), University of Hawai'i at Mānoa, 1955 East-West Road, Agricultural Science Building 218, Honolulu, HI 96822, USA.
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Yim SS, Choi JW, Lee SH, Jeong KJ. Modular Optimization of a Hemicellulose-Utilizing Pathway in Corynebacterium glutamicum for Consolidated Bioprocessing of Hemicellulosic Biomass. ACS Synth Biol 2016; 5:334-43. [PMID: 26808593 DOI: 10.1021/acssynbio.5b00228] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Hemicellulose, which is the second most abundant polysaccharide in nature after cellulose, has the potential to become a major feedstock for microbial fermentation to produce various biofuels and chemicals. To utilize hemicellulose economically, it is necessary to develop a consolidated bioprocess (CBP), in which all processes from biomass degradation to the production of target products occur in a single bioreactor. Here, we report a modularly engineered Corynebacterium glutamicum strain suitable for CBP using hemicellulosic biomass (xylan) as a feedstock. The hemicellulose-utilizing pathway was divided into three distinct modules, and each module was separately optimized. In the module for xylose utilization, the expression level of the xylose isomerase (xylA) and xylulokinase (xylB) genes was optimized with synthetic promoters of different strengths. Then, the module for xylose transport was engineered with combinatorial sets of synthetic promoters and heterologous transporters to achieve the fastest cell growth rate on xylose (0.372 h(-1)). Next, the module for the enzymatic degradation of xylan to xylose was also engineered with different combinations of promoters and signal peptides to efficiently secrete both endoxylanase and xylosidase into the extracellular medium. Finally, each optimized module was integrated into a single plasmid to construct a highly efficient xylan-utilizing pathway. Subsequently, the direct production of lysine from xylan was successfully demonstrated with the engineered pathway. To the best of our knowledge, this is the first report of the development of a consolidated bioprocessing C. glutamicum strain for hemicellulosic biomass.
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Affiliation(s)
- Sung Sun Yim
- Department of Chemical and Biomolecular Engineering, BK21 Plus Program, ‡Institute for the BioCentury, KAIST, 291 Daehak-ro,
Yuseong-gu, Daejeon 34141, Republic of Korea
| | - Jae Woong Choi
- Department of Chemical and Biomolecular Engineering, BK21 Plus Program, ‡Institute for the BioCentury, KAIST, 291 Daehak-ro,
Yuseong-gu, Daejeon 34141, Republic of Korea
| | - Se Hwa Lee
- Department of Chemical and Biomolecular Engineering, BK21 Plus Program, ‡Institute for the BioCentury, KAIST, 291 Daehak-ro,
Yuseong-gu, Daejeon 34141, Republic of Korea
| | - Ki Jun Jeong
- Department of Chemical and Biomolecular Engineering, BK21 Plus Program, ‡Institute for the BioCentury, KAIST, 291 Daehak-ro,
Yuseong-gu, Daejeon 34141, Republic of Korea
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Leo VV, Passari AK, Joshi JB, Mishra VK, Uthandi S, Ramesh N, Gupta VK, Saikia R, Sonawane VC, Singh BP. A Novel Triculture System (CC3) for Simultaneous Enzyme Production and Hydrolysis of Common Grasses through Submerged Fermentation. Front Microbiol 2016; 7:447. [PMID: 27065995 PMCID: PMC4815437 DOI: 10.3389/fmicb.2016.00447] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2016] [Accepted: 03/18/2016] [Indexed: 11/13/2022] Open
Abstract
The perennial grasses are considered as a rich source of lignocellulosic biomass, making it a second generation alternative energy source and can diminish the use of fossil fuels. In this work, four perennial grasses Saccharum arundinaceum, Panicum antidotale, Thysanolaena latifolia, and Neyraudia reynaudiana were selected to verify their potential as a substrate to produce hydrolytic enzymes and to evaluate them as second generation energy biomass. Here, cellulase and hemi-cellulase producing three endophytic bacteria (Burkholderia cepacia BPS-GB3, Alcaligenes faecalis BPS-GB5 and Enterobacter hormaechei BPS-GB8) recovered from N. reynaudiana and S. arundinaceum were selected to develop a triculture (CC3) consortium. During 12 days of submerged cultivation, a 55–70% loss in dry weight was observed and the maximum activity of β-glucosidase (5.36–12.34 IU) and Xylanase (4.33 to 10.91 IU) were observed on 2nd and 6th day respectively, whereas FPase (0.26 to 0.53 IU) and CMCase (2.31 to 4.65 IU) showed maximum activity on 4th day. Around 15–30% more enzyme activity was produced in CC3 as compared to monoculture (CC1) and coculture (CC2) treatments, suggested synergetic interaction among the selected three bacterial strains. Further, the biomass was assessed using Fourier-transform infrared spectroscopy (FTIR) and Scanning electron microscopy (SEM). The FTIR analysis provides important insights into the reduction of cellulose and hemicellulose moieties in CC3 treated biomass and SEM studies shed light into the disruption of surface structure leading to access of cellulose or hemicelluloses microtubules. The hydrolytic potential of the CC3 system was further enhanced due to reduction in lignin as evidenced by 1–4% lignin reduction in biomass compositional analysis. Additionally, laccase gene was detected from A. faecalis and E. hormaechei which further shows the laccase production potential of the isolates. To our knowledge, first time we develop an effective endophytic endogenous bacterial triculture system having potential for the production of extracellular enzymes utilizing S. arundinaceum and N. reynaudiana as lignocellulosic feedstock.
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Affiliation(s)
- Vincent V Leo
- Molecular Microbiology and Systematics Laboratory, Department of Biotechnology, Mizoram UniversityAizawl, India; Department of Biotechnology, J.J College for Arts and SciencePudukkottai, India
| | - Ajit K Passari
- Molecular Microbiology and Systematics Laboratory, Department of Biotechnology, Mizoram University Aizawl, India
| | - J Beslin Joshi
- Biocatalysts Lab, Department of Agricultural Microbiology, Tamil Nadu Agricultural University Coimbatore, India
| | - Vineet K Mishra
- Molecular Microbiology and Systematics Laboratory, Department of Biotechnology, Mizoram University Aizawl, India
| | - Sivakumar Uthandi
- Biocatalysts Lab, Department of Agricultural Microbiology, Tamil Nadu Agricultural University Coimbatore, India
| | - N Ramesh
- Department of Biotechnology, J.J College for Arts and Science Pudukkottai, India
| | - Vijai K Gupta
- Molecular Glyco-biotechnology Group, Department of Biochemistry, National University of Ireland Galway Galway, Ireland
| | - Ratul Saikia
- Biotechnology Division, CSIR-North East Institute of Science and Technology Jorhat, Assam, India
| | - Vijay C Sonawane
- Biochemical Engineering Research and Process Development Centre (BERPDC), Institute of Microbial Technology Chandigarh, India
| | - Bhim P Singh
- Molecular Microbiology and Systematics Laboratory, Department of Biotechnology, Mizoram University Aizawl, India
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Angelini S, Cerruti P, Immirzi B, Scarinzi G, Malinconico M. Acid-insoluble lignin and holocellulose from a lignocellulosic biowaste: Bio-fillers in poly(3-hydroxybutyrate). Eur Polym J 2016. [DOI: 10.1016/j.eurpolymj.2016.01.024] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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de Lima EA, Machado CB, Zanphorlin LM, Ward RJ, Sato HH, Ruller R. GH53 Endo-Beta-1,4-Galactanase from a Newly Isolated Bacillus licheniformis CBMAI 1609 as an Enzymatic Cocktail Supplement for Biomass Saccharification. Appl Biochem Biotechnol 2016; 179:415-26. [DOI: 10.1007/s12010-016-2003-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2015] [Accepted: 01/27/2016] [Indexed: 11/24/2022]
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50
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Lignin Biodegradation with Fungi, Bacteria and Enzymes for Producing Chemicals and Increasing Process Efficiency. PRODUCTION OF BIOFUELS AND CHEMICALS FROM LIGNIN 2016. [DOI: 10.1007/978-981-10-1965-4_6] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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