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Pitiwittayakul N, Yukphan P, Charoenyingcharoen P, Tanasupawat S. Endosaccharibacter trunci gen. nov., sp. nov. and Rhizosaccharibacter radicis gen. nov., sp. nov., two novel bacteria of the family Acetobacteraceae isolated from sugarcane. Heliyon 2024; 10:e32825. [PMID: 39005926 PMCID: PMC11239595 DOI: 10.1016/j.heliyon.2024.e32825] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2024] [Revised: 05/27/2024] [Accepted: 06/10/2024] [Indexed: 07/16/2024] Open
Abstract
Two novel endophytic bacterial strains, designated KSS8T and KSS12T, were isolated from the stems and roots of sugarcane, respectively, collected in Nakhon Ratchasima, Thailand. They were Gram-stain-negative, aerobic, and rod-shaped. The strain KSS8T was a motile bacterium with a subpolar flagellum, while the strain KSS12T was non-motile. Strains KSS8T and KSS12T were closely related to Lichenicola cladoniae PAMC 26569T (97.3 and 95.6 %, respectively) and Lichenicoccus roseus KEBCLARHB70RT (97.2 and 95.8 %, respectively) based on the similarity on their 16S rRNA gene sequence. This similarity corresponded to their phylogenomic positions within the evolutionary radiation of the family Acetobacteraceae. The average nucleotide identities and digital DNA-DNA hybridization values between the genome sequences of the two strains and other genera were significantly lower than the defined threshold values of 95-96 % and 70 %, respectively, which are used for the delineation of prokaryotic species. Both strains contained summed feature 8 (C18:1 ω7c and/or C18:1 ω6c), C16:0, C19:0 cyclo ω8c, C18:0, and C18:1 2OH as the predominant cellular fatty acids, but C18:3 ω6c (6, 9, 12) were found only in strain KSS12T. Based on phenotypic, chemotaxonomic, phylogenetic, and genomic analyses, these strains clearly represented two novel genera within the family Acetobacteraceae, for which the name Endosaccharibacter gen. nov., with the type species Endosaccharibacter trunci sp. nov. (type strain, KSS8T = TBRC 14669T = NBRC 115232T = KCTC 92115T = LMG 32414T) and the name Rhizosacchari bacter gen. nov., with the type species Rhizosaccharibacter radicis sp. nov. (type strain, KSS12T = TBRC 13066T = NBRC 114898T = KCTC 82433T = LMG 32137T) are proposed.
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Affiliation(s)
- Nittaya Pitiwittayakul
- Faculty of Agricultural Innovation and Technology, Rajamangala University of Technology Isan, Nakhon Ratchasima Campus, Nakhon Ratchasima 30000, Thailand
| | - Pattaraporn Yukphan
- Microbial Diversity and Utilization Research Team, Thailand Bioresource Research Center (TBRC), National Center for Genetic Engineering and Biotechnology (BIOTEC), Pathumthani 12120, Thailand
| | - Piyanat Charoenyingcharoen
- Microbial Diversity and Utilization Research Team, Thailand Bioresource Research Center (TBRC), National Center for Genetic Engineering and Biotechnology (BIOTEC), Pathumthani 12120, Thailand
| | - Somboon Tanasupawat
- Department of Biochemistry and Microbiology, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok 10330, Thailand
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Garrigós M, Garrido M, Morales-Yuste M, Martínez-de la Puente J, Veiga J. Survival effects of antibiotic exposure during the larval and adult stages in the West Nile virus vector Culex pipiens. INSECT SCIENCE 2024; 31:542-550. [PMID: 37559499 DOI: 10.1111/1744-7917.13259] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Revised: 06/26/2023] [Accepted: 07/15/2023] [Indexed: 08/11/2023]
Abstract
The ability of mosquitoes to transmit a pathogen is affected, among other factors, by their survival rate, which is partly modulated by their microbiota. Mosquito microbiota is acquired during the larval phase and modified during their development and adult feeding behavior, being highly dependent on environmental factors. Pharmaceutical residues including antibiotics are widespread pollutants potentially being present in mosquito breeding waters likely affecting their microbiota. Here, we used Culex pipiens mosquitoes to assess the impact of antibiotic exposure during the larval and adult stages on the survival rate of adult mosquitoes. Wild-collected larvae were randomly assigned to two treatments: larvae maintained in water supplemented with antibiotics and control larvae. Emerged adults were subsequently assigned to each of two treatments, fed with sugar solution with antibiotics and fed only with sugar solution (controls). Larval exposure to antibiotics significantly increased the survival rate of adult females that received a control diet. In addition, the effect of adult exposure to antibiotics on the survival rate of both male and female mosquitoes depended on the number of days that larvae fed ad libitum in the laboratory before emergence. In particular, shorter larval ad libitum feeding periods reduced the survival rate of antibiotic-treated adult mosquitoes compared with those that emerged after a longer larval feeding period. These differences were not found in control adult mosquitoes. Our results extend the current understanding of the impact of antibiotic exposure of mosquitoes on a key component of vectorial capacity, that is the vector survival rate.
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Affiliation(s)
- Marta Garrigós
- Faculty of Pharmacy, Department of Parasitology, University of Granada, Granada, Spain
| | - Mario Garrido
- Faculty of Pharmacy, Department of Parasitology, University of Granada, Granada, Spain
| | - Manuel Morales-Yuste
- Faculty of Pharmacy, Department of Parasitology, University of Granada, Granada, Spain
| | - Josué Martínez-de la Puente
- Faculty of Pharmacy, Department of Parasitology, University of Granada, Granada, Spain
- CIBER de Epidemiología y Salud Pública (CIBERESP), Madrid, Spain
| | - Jesús Veiga
- Faculty of Pharmacy, Department of Parasitology, University of Granada, Granada, Spain
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Scherer BP, Mason OU, Mast AR. Bacterial communities vary across populations and tissue type in red mangroves (Rhizophora mangle, Rhizophoraceae) along an expanding front. FEMS Microbiol Ecol 2022; 98:6840209. [PMID: 36413458 DOI: 10.1093/femsec/fiac139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 11/07/2022] [Accepted: 11/18/2022] [Indexed: 11/23/2022] Open
Abstract
Plant-associated microbial communities may be important sources of functional diversity and genetic variation that influence host evolution. Bacteria provide benefits for their hosts, yet in most plant systems we know little about their taxonomic composition or variation across tissues and host range. Red Mangrove (Rhizophora mangle L.) is a vital coastal plant species that is currently expanding poleward and with it, perhaps, its microbiome. We explored variability in bacterial communities across tissues, individuals, and populations. We collected samples from six sample types from 5 to 10 individuals at each of three populations and used 16S rRNA gene (iTag) sequencing to describe their bacterial communities. Core community members and dominant bacterial classes were determined for each sample type. Pairwise PERMANOVA of Bray-Curtis dissimilarity and Indicator Species Analysis revealed significant differences in bacterial communities between sample types and populations. We described the previously unexplored microbiome of the reproductive tissues of R. mangle. Populations and most sample types were associated with distinct communities. Bacterial communities associated with R. mangle are influenced by host geography and sample type. Our study provides a foundation for future work exploring the functional roles of these microbes and their relevance to biogeochemical cycling.
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Affiliation(s)
- Brendan P Scherer
- Florida State University, 319 Stadium Drive, Tallahassee, FL 32304, United States
| | - Olivia U Mason
- Department of Earth, Ocean and Atmospheric Sciences, Florida State University, 1011 Academic Way, Tallahassee, FL 32304, United States
| | - Austin R Mast
- Department of Biological Sciences, Florida State University, 319 Stadium Drive, Tallahassee, FL 32304, United States
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da Silva H, Oliveira TMP, Sabino EC, Alonso DP, Sallum MAM. Bacterial diversity in Haemagogus leucocelaenus (Diptera: Culicidae) from Vale do Ribeira, São Paulo, Brazil. BMC Microbiol 2022; 22:161. [PMID: 35733096 PMCID: PMC9215073 DOI: 10.1186/s12866-022-02571-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Accepted: 06/06/2022] [Indexed: 01/29/2023] Open
Abstract
INTRODUCTION Mosquitoes (Diptera: Culicidae) are vectors that transmit numerous pathogens to humans and other vertebrates. Haemagogus leucocelaenus is a mosquito associated with transmission of yellow fever virus. The insect gut harbors a variety of microorganisms that can live and multiply within it, thus contributing to digestion, nutrition, and development of its host. The composition of bacterial communities in mosquitoes can be influenced by both biotic and abiotic factors. The goal of this study was to investigate the bacterial diversity of Hg. leucocelaenus and verify the differences between the bacterial communities in Hg. leucocelaenus from three different locations in the Atlantic tropical rain forest and southeastern state of São Paulo State, Brazil. RESULTS The phylum Proteobacteria was found in mosquitoes collected from the three selected study sites. More than 50% of the contigs belong to Wolbachia, followed by 5% Swaminathania, and 3% Acinetobacter. The genus Serratia was found in samples from two locations. CONCLUSIONS Wolbachia was reported for the first time in this species and may indicates that the vector competence of the populations of the species can vary along its geographical distribution area. The presence of Serratia might facilitate viral invasion caused by the disruption of the midgut barrier via action of the SmEnhancin protein, which digests the mucins present in the intestinal epithelium.
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Affiliation(s)
- Herculano da Silva
- Departamento de Epidemiologia, Faculdade de Saúde Pública, Universidade de São Paulo, Av. Dr. Arnaldo 715, São Paulo, SP 01246-904 Brazil
| | - Tatiane M. P. Oliveira
- Departamento de Epidemiologia, Faculdade de Saúde Pública, Universidade de São Paulo, Av. Dr. Arnaldo 715, São Paulo, SP 01246-904 Brazil
| | - Ester C. Sabino
- Departamento de Moléstias Infecciosas e Parasitarias, Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, Av. Dr. Eneas de Carvalho 470, 1º andar, São Paulo, 05403-000 Brazil
| | - Diego Peres Alonso
- Departamento de Epidemiologia, Faculdade de Saúde Pública, Universidade de São Paulo, Av. Dr. Arnaldo 715, São Paulo, SP 01246-904 Brazil
- Biotechnology Institute and Bioscience Institute, Sao Paulo State University (UNESP), Botucatu, 18618-689 Brazil
| | - Maria Anice M. Sallum
- Departamento de Epidemiologia, Faculdade de Saúde Pública, Universidade de São Paulo, Av. Dr. Arnaldo 715, São Paulo, SP 01246-904 Brazil
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Metabolic interactions between disease-transmitting vectors and their microbiota. Trends Parasitol 2022; 38:697-708. [DOI: 10.1016/j.pt.2022.05.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Revised: 04/29/2022] [Accepted: 05/04/2022] [Indexed: 11/21/2022]
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Glucose-mediated proliferation of a gut commensal bacterium promotes Plasmodium infection by increasing mosquito midgut pH. Cell Rep 2021; 35:108992. [PMID: 33882310 PMCID: PMC8116483 DOI: 10.1016/j.celrep.2021.108992] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2020] [Revised: 12/06/2020] [Accepted: 03/24/2021] [Indexed: 12/30/2022] Open
Abstract
Plant-nectar-derived sugar is the major energy source for mosquitoes, but its influence on vector competence for malaria parasites remains unclear. Here, we show that Plasmodium berghei infection of Anopheles stephensi results in global metabolome changes, with the most significant impact on glucose metabolism. Feeding on glucose or trehalose (the main hemolymph sugars) renders the mosquito more susceptible to Plasmodium infection by alkalizing the mosquito midgut. The glucose/trehalose diets promote proliferation of a commensal bacterium, Asaia bogorensis, that remodels glucose metabolism in a way that increases midgut pH, thereby promoting Plasmodium gametogenesis. We also demonstrate that the sugar composition from different natural plant nectars influences A. bogorensis growth, resulting in a greater permissiveness to Plasmodium. Altogether, our results demonstrate that dietary glucose is an important determinant of mosquito vector competency for Plasmodium, further highlighting a key role for mosquito-microbiota interactions in regulating the development of the malaria parasite.
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Bassene H, Niang EHA, Fenollar F, Doucoure S, Faye O, Raoult D, Sokhna C, Mediannikov O. Role of plants in the transmission of Asaia sp., which potentially inhibit the Plasmodium sporogenic cycle in Anopheles mosquitoes. Sci Rep 2020; 10:7144. [PMID: 32346047 PMCID: PMC7189373 DOI: 10.1038/s41598-020-64163-5] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2019] [Accepted: 04/07/2020] [Indexed: 12/03/2022] Open
Abstract
Biological control against malaria and its transmission is currently a considerable challenge. Plant-associated bacteria of the genus Asaia are frequently found in nectarivorous arthropods, they thought to have a natural indirect action on the development of plasmodium in mosquitoes. However, virtually nothing is known about its natural cycle. Here, we show the role of nectar-producing plants in the hosting and dissemination of Asaia. We isolated Asaia strains from wild mosquitoes and flowers in Senegal and demonstrated the transmission of the bacteria from infected mosquitoes to sterile flowers and then to 26.6% of noninfected mosquitoes through nectar feeding. Thus, nectar-producing plants may naturally acquire Asaia and then colonize Anopheles mosquitoes through food-borne contamination. Finally, Asaia may play an indirect role in the reduction in the vectorial capacity of Anopheles mosquitoes in a natural environment (due to Plasmodium-antagonistic capacities of Asaia) and be used in the development of tools for Asaia-based paratransgenetic malaria control.
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Affiliation(s)
| | - El Hadji Amadou Niang
- IHU-Méditerranée Infection, Marseille, France
- Laboratoire d'Ecologie Vectorielle et Parasitaire, Faculté des Sciences et Techniques, Université Cheikh Anta Diop (UCAD), de Dakar, Sénégal
| | - Florence Fenollar
- IHU-Méditerranée Infection, Marseille, France
- VITROME, Aix Marseille Univ, IRD, AP-HM, SSA, Marseille, France
| | | | - Ousmane Faye
- Laboratoire d'Ecologie Vectorielle et Parasitaire, Faculté des Sciences et Techniques, Université Cheikh Anta Diop (UCAD), de Dakar, Sénégal
| | - Didier Raoult
- MEФI, IRD, Aix Marseille Univ, AP-HM, Marseille, France
- IHU-Méditerranée Infection, Marseille, France
| | - Cheikh Sokhna
- VITROME, Campus International UCAD-IRD, Dakar, Sénégal
- IHU-Méditerranée Infection, Marseille, France
| | - Oleg Mediannikov
- MEФI, IRD, Aix Marseille Univ, AP-HM, Marseille, France.
- IHU-Méditerranée Infection, Marseille, France.
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Majumder R, Sutcliffe B, Taylor PW, Chapman TA. Next-Generation Sequencing reveals relationship between the larval microbiome and food substrate in the polyphagous Queensland fruit fly. Sci Rep 2019; 9:14292. [PMID: 31575966 PMCID: PMC6773747 DOI: 10.1038/s41598-019-50602-5] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2019] [Accepted: 09/16/2019] [Indexed: 01/28/2023] Open
Abstract
Insects typically host substantial microbial communities (the ‘microbiome’) that can serve as a vital source of nutrients and also acts as a modulator of immune function. While recent studies have shown that diet is an important influence on the gut microbiome, very little is known about the dynamics underpinning microbial acquisition from natural food sources. Here, we addressed this gap by comparing the microbiome of larvae of the polyphagous fruit fly Bactrocera tryoni (‘Queensland fruit fly’) that were collected from five different fruit types (sapodilla [from two different localities], hog plum, pomegranate, green apple, and quince) from North-east to South-east Australia. Using Next-Generation Sequencing on the Illumina MiSeq platform, we addressed two questions: (1) what bacterial communities are available to B. tryoni larvae from different host fruit; and (2) how does the microbiome vary between B. tryoni larvae and its host fruit? The abundant bacterial taxa were similar for B. tryoni larvae from different fruit despite significant differences in the overall microbial community compositions. Our study suggests that the bacterial community structure of B. tryoni larvae is related less to the host fruit (diet) microbiome and more to vertical transfer of the microbiome during egg laying. Our findings also suggest that geographic location may play a quite limited role in structuring of larval microbiomes. This is the first study to use Next-Generation Sequencing to analyze the microbiome of B. tryoni larvae together with the host fruit, an approach that has enabled greatly increased resolution of relationships between the insect’s microbiome and that of the surrounding host tissues.
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Affiliation(s)
- Rajib Majumder
- Department of Biological Sciences, Macquarie University, North Ryde, NSW, 2109, Australia. .,Biosecurity and Food Safety, NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute (EMAI), Menangle, NSW, 2567, Australia.
| | - Brodie Sutcliffe
- Department of Environmental Sciences, Macquarie University, North Ryde, NSW, 2109, Australia
| | - Phillip W Taylor
- Department of Biological Sciences, Macquarie University, North Ryde, NSW, 2109, Australia
| | - Toni A Chapman
- Department of Biological Sciences, Macquarie University, North Ryde, NSW, 2109, Australia.,Biosecurity and Food Safety, NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute (EMAI), Menangle, NSW, 2567, Australia
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Jakob F, Quintero Y, Musacchio A, Estrada‐de los Santos P, Hernández L, Vogel RF. Acetic acid bacteria encode two levansucrase types of different ecological relationship. Environ Microbiol 2019; 21:4151-4165. [DOI: 10.1111/1462-2920.14768] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Revised: 07/24/2019] [Accepted: 07/31/2019] [Indexed: 01/10/2023]
Affiliation(s)
- Frank Jakob
- Lehrstuhl für Technische Mikrobiologie, Technische Universität München Gregor‐Mendel‐Straße 4, 85354 Freising Germany
| | - Yamira Quintero
- Grupo Tecnología de Enzimas, Centro de Ingeniería Genética y Biotecnología (CIGB) Ave 31 entre 158 y 190, Apartado Postal 6162, Habana 10600 Cuba
| | - Alexis Musacchio
- Departamento de Biología de Sistemas Centro de Ingeniería Genética y Biotecnología (CIGB) Ave 31 entre 158 y 190, Apartado Postal 6162, Habana 10600 Cuba
| | - Paulina Estrada‐de los Santos
- Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prol. de Carpio y Plan de Ayala s/n Col. Santo Tomás C.P., 11340 Cd. de México Mexico
| | - Lázaro Hernández
- Grupo Tecnología de Enzimas, Centro de Ingeniería Genética y Biotecnología (CIGB) Ave 31 entre 158 y 190, Apartado Postal 6162, Habana 10600 Cuba
| | - Rudi F. Vogel
- Lehrstuhl für Technische Mikrobiologie, Technische Universität München Gregor‐Mendel‐Straße 4, 85354 Freising Germany
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Ojha A, Zhang W. A comparative study of microbial community and dynamics of Asaia in the brown planthopper from susceptible and resistant rice varieties. BMC Microbiol 2019; 19:139. [PMID: 31234788 PMCID: PMC6591912 DOI: 10.1186/s12866-019-1512-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Accepted: 06/10/2019] [Indexed: 12/19/2022] Open
Abstract
BACKGROUND The brown planthopper (BPH) is likely the most destructive, piercing and sucking monophagous insect pest of rice that causes substantial economic losses to farmers. Although yeast-like symbionts (YLS) and virus transmission have been observed in the BPH, the bacterial population inhabiting the BPH has received minimal research attention. Labelling BPH-associated bacterial species may shed light on BPH biology and the interaction between the BPH and rice to provide novel approaches for the efficient control of this insect pest. RESULTS We examined RNA-seq results to identify bacterial populations present in different generations of BPHs maintained on susceptible or resistant rice varieties. Overall, 87 operational taxonomic units (OTUs) were determined from the BPH-F0, F6 and F16 generations. These OTUs had Shannon and Simpson index values of 0.37-0.6 and 0.56-1.19, respectively. The evenness values of 0.7-1.00 showed the vastness of the bacterial diversity recovered from the BPH samples. The results showed high species diversity in the BPHs collected from susceptible rice and a high number of members of unclassified bacteria in the BPHs isolated from resistant rice. We noticed that Proteobacteria OTUs were predominant across all samples. Furthermore, PCR data of Asaia species showed variable DNA amplification across the BPH samples collected from susceptible or resistant varieties. The identification of Asaia in BPH eggs and BPH-egg-infected rice revealed its influence on the interaction between the BPH egg and rice. CONCLUSIONS The BPHs had clear differences in their microbiomes and in their ability to feed on different rice hosts. These variations could have an essential impact on host adaptation and interaction. These results provide a better understanding of the bacterial diversity and interaction of the microbiome of different generations of BPHs. Furthermore, PCR data of Asaia sp. variation across the BPH samples (isolated from different host genotypes selected from the field and laboratory, including BPH eggs and egg-infected rice tissues), suggest that Asaia could be an important member of the insect microbiome involved in adaptation, its interaction with rice and, most importantly, as a paratransgenic tool for insect control.
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Affiliation(s)
- Abhishek Ojha
- State Key Laboratory of Biocontrol and School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, Guangdong, China.,State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, Hefei, 230036, Anhui, China
| | - Wenqing Zhang
- State Key Laboratory of Biocontrol and School of Life Sciences, Sun Yat-sen University, Guangzhou, 510275, Guangdong, China.
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Deutscher AT, Burke CM, Darling AE, Riegler M, Reynolds OL, Chapman TA. Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae. MICROBIOME 2018; 6:85. [PMID: 29729663 PMCID: PMC5935925 DOI: 10.1186/s40168-018-0463-y] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2017] [Accepted: 04/19/2018] [Indexed: 05/25/2023]
Abstract
BACKGROUND Gut microbiota affects tephritid (Diptera: Tephritidae) fruit fly development, physiology, behavior, and thus the quality of flies mass-reared for the sterile insect technique (SIT), a target-specific, sustainable, environmentally benign form of pest management. The Queensland fruit fly, Bactrocera tryoni (Tephritidae), is a significant horticultural pest in Australia and can be managed with SIT. Little is known about the impacts that laboratory-adaptation (domestication) and mass-rearing have on the tephritid larval gut microbiome. Read lengths of previous fruit fly next-generation sequencing (NGS) studies have limited the resolution of microbiome studies, and the diversity within populations is often overlooked. In this study, we used a new near full-length (> 1300 nt) 16S rRNA gene amplicon NGS approach to characterize gut bacterial communities of individual B. tryoni larvae from two field populations (developing in peaches) and three domesticated populations (mass- or laboratory-reared on artificial diets). RESULTS Near full-length 16S rRNA gene sequences were obtained for 56 B. tryoni larvae. OTU clustering at 99% similarity revealed that gut bacterial diversity was low and significantly lower in domesticated larvae. Bacteria commonly associated with fruit (Acetobacteraceae, Enterobacteriaceae, and Leuconostocaceae) were detected in wild larvae, but were largely absent from domesticated larvae. However, Asaia, an acetic acid bacterium not frequently detected within adult tephritid species, was detected in larvae of both wild and domesticated populations (55 out of 56 larval gut samples). Larvae from the same single peach shared a similar gut bacterial profile, whereas larvae from different peaches collected from the same tree had different gut bacterial profiles. Clustering of the Asaia near full-length sequences at 100% similarity showed that the wild flies from different locations had different Asaia strains. CONCLUSIONS Variation in the gut bacterial communities of B. tryoni larvae depends on diet, domestication, and horizontal acquisition. Bacterial variation in wild larvae suggests that more than one bacterial species can perform the same functional role; however, Asaia could be an important gut bacterium in larvae and warrants further study. A greater understanding of the functions of the bacteria detected in larvae could lead to increased fly quality and performance as part of the SIT.
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Affiliation(s)
- Ania T. Deutscher
- Present Address: Biosecurity and Food Safety, NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, NSW Australia
- Graham Centre for Agricultural Innovation (an alliance between NSW Department of Primary Industries and Charles Sturt University), Elizabeth Macarthur Agricultural Institute, Menangle, NSW Australia
| | - Catherine M. Burke
- School of Life Sciences, University of Technology Sydney, Sydney, NSW Australia
| | - Aaron E. Darling
- The ithree institute, University of Technology Sydney, Sydney, NSW Australia
| | - Markus Riegler
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW Australia
| | - Olivia L. Reynolds
- Present Address: Biosecurity and Food Safety, NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, NSW Australia
- Graham Centre for Agricultural Innovation (an alliance between NSW Department of Primary Industries and Charles Sturt University), Elizabeth Macarthur Agricultural Institute, Menangle, NSW Australia
| | - Toni A. Chapman
- Present Address: Biosecurity and Food Safety, NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, NSW Australia
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Ivens ABF, Gadau A, Kiers ET, Kronauer DJC. Can social partnerships influence the microbiome? Insights from ant farmers and their trophobiont mutualists. Mol Ecol 2018; 27:1898-1914. [PMID: 29411455 PMCID: PMC5935579 DOI: 10.1111/mec.14506] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2017] [Revised: 11/21/2017] [Accepted: 11/28/2017] [Indexed: 01/02/2023]
Abstract
Mutualistic interactions with microbes have played a crucial role in the evolution and ecology of animal hosts. However, it is unclear what factors are most important in influencing particular host–microbe associations. While closely related animal species may have more similar microbiota than distantly related species due to phylogenetic contingencies, social partnerships with other organisms, such as those in which one animal farms another, may also influence an organism's symbiotic microbiome. We studied a mutualistic network of Brachymyrmex and Lasius ants farming several honeydew‐producing Prociphilus aphids and Rhizoecus mealybugs to test whether the mutualistic microbiomes of these interacting insects are primarily correlated with their phylogeny or with their shared social partnerships. Our results confirm a phylogenetic signal in the microbiomes of aphid and mealybug trophobionts, with each species harbouring species‐specific endosymbiont strains of Buchnera (aphids), Tremblaya and Sodalis (mealybugs), and Serratia (both mealybugs and aphids) despite being farmed by the same ants. This is likely explained by strict vertical transmission of trophobiont endosymbionts between generations. In contrast, our results show the ants’ microbiome is possibly shaped by their social partnerships, with ants that farm the same trophobionts also sharing strains of sugar‐processing Acetobacteraceae bacteria, known from other honeydew‐feeding ants and which likely reside extracellularly in the ants’ guts. These ant–microbe associations are arguably more “open” and subject to horizontal transmission or social transmission within ant colonies. These findings suggest that the role of social partnerships in shaping a host's symbiotic microbiome can be variable and is likely dependent on how the microbes are transmitted across generations.
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Affiliation(s)
- Aniek B F Ivens
- Animal Ecology Section, Department of Ecological Science, Faculty of Science, Vrije Universiteit, Amsterdam, The Netherlands.,Laboratory of Social Evolution and Behavior, The Rockefeller University, New York, NY, USA
| | - Alice Gadau
- Laboratory of Social Evolution and Behavior, The Rockefeller University, New York, NY, USA
| | - E Toby Kiers
- Animal Ecology Section, Department of Ecological Science, Faculty of Science, Vrije Universiteit, Amsterdam, The Netherlands
| | - Daniel J C Kronauer
- Laboratory of Social Evolution and Behavior, The Rockefeller University, New York, NY, USA
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13
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Hu Y, Holway DA, Łukasik P, Chau L, Kay AD, LeBrun EG, Miller KA, Sanders JG, Suarez AV, Russell JA. By their own devices: invasive Argentine ants have shifted diet without clear aid from symbiotic microbes. Mol Ecol 2017; 26:1608-1630. [PMID: 28026894 DOI: 10.1111/mec.13991] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2016] [Revised: 11/29/2016] [Accepted: 12/01/2016] [Indexed: 12/31/2022]
Abstract
The functions and compositions of symbiotic bacterial communities often correlate with host ecology. Yet cause-effect relationships and the order of symbiont vs. host change remain unclear in the face of ancient symbioses and conserved host ecology. Several groups of ants exemplify this challenge, as their low-nitrogen diets and specialized symbioses appear conserved and ancient. To address whether nitrogen-provisioning symbionts might be important in the early stages of ant trophic shifts, we studied bacteria from the Argentine ant, Linepithema humile - an invasive species that has transitioned towards greater consumption of sugar-rich, nitrogen-poor foods in parts of its introduced range. Bacteria were present at low densities in most L. humile workers, and among those yielding quality 16S rRNA amplicon sequencing data, we found just three symbionts to be common and dominant. Two, a Lactobacillus and an Acetobacteraceae species, were shared between native and introduced populations. The other, a Rickettsia, was found only in two introduced supercolonies. Across an eight-year period of trophic reduction in one introduced population, we found no change in symbionts, arguing against a relationship between natural dietary change and microbiome composition. Overall, our findings thus argue against major changes in symbiotic bacteria in association with the invasion and trophic shift of L. humile. In addition, genome content from close relatives of the identified symbionts suggests that just one can synthesize most essential amino acids; this bacterium was only modestly abundant in introduced populations, providing little support for a major role of nitrogen-provisioning symbioses in Argentine ant's dietary shift.
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Affiliation(s)
- Yi Hu
- Department of Biology, Drexel University, Philadelphia, PA, 19104, USA
| | - David A Holway
- Division of Biological Sciences, University of California-San Diego, La Jolla, CA, 92093, USA
| | - Piotr Łukasik
- Department of Biology, Drexel University, Philadelphia, PA, 19104, USA
| | - Linh Chau
- Department of Biology, Drexel University, Philadelphia, PA, 19104, USA
| | - Adam D Kay
- Department of Biology, University of St. Thomas, St. Paul, MN, 55105, USA
| | - Edward G LeBrun
- Department of Integrative Biology, The University of Texas at Austin, Austin, TX, 78703, USA
| | - Katie A Miller
- Department of Biology, University of St. Thomas, St. Paul, MN, 55105, USA
| | - Jon G Sanders
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, 02138, USA
| | - Andrew V Suarez
- Department of Animal Biology, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA
| | - Jacob A Russell
- Department of Biology, Drexel University, Philadelphia, PA, 19104, USA
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14
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Carretto E, Visiello R, Bardaro M, Schivazappa S, Vailati F, Farina C, Barbarini D. Asaia lannensis bacteremia in a 'needle freak' patient. Future Microbiol 2015; 11:23-9. [PMID: 26674160 DOI: 10.2217/fmb.15.126] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The genus Asaia has gained much interest lately owing to constant new species discoveries and its role as a potential opportunistic pathogen to humans. Here we describe a transient bacteremia due to Asaia lannensis in a patient with a psychiatric disorder (compulsive self-injection of different substances). Common phenotypic methods of identification failed to identify this organism, and only restriction fragment lenght polymorphism of PCR-amplified 16S rRNA gene allowed for proper identification. The isolate was highly resistant to most antibiotics. The paper also discusses the currently available medical literature, acknowledges the potential problems linked to the isolation of these strains and proposes an approach to species identification that can be applied in a clinical microbiology laboratory.
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Affiliation(s)
- Edoardo Carretto
- Clinical Microbiology Laboratory - IRCCS Arcispedale Santa Maria Nuova, Reggio Emilia, Italy
| | - Rosa Visiello
- Clinical Microbiology Laboratory - IRCCS Arcispedale Santa Maria Nuova, Reggio Emilia, Italy
| | - Marcellino Bardaro
- Clinical Microbiology Laboratory - IRCCS Arcispedale Santa Maria Nuova, Reggio Emilia, Italy
| | - Simona Schivazappa
- Infectious Diseases - IRCCS Arcispedale Santa Maria Nuova, Reggio Emilia, Italy
| | - Francesca Vailati
- Microbiology & Virology Laboratory - Azienda Ospedaliera 'Papa Giovanni XXIII', Bergamo, Italy
| | - Claudio Farina
- Microbiology & Virology Laboratory - Azienda Ospedaliera 'Papa Giovanni XXIII', Bergamo, Italy
| | - Daniela Barbarini
- Virology & Microbiology Laboratory - Fondazione IRCCS Policlinico San Matteo, Pavia, Italy
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15
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Chakravorty S, Sarkar S, Gachhui R. Identification of new conserved and variable regions in the 16S rRNA gene of acetic acid bacteria and acetobacteraceae family. Mol Biol 2015. [DOI: 10.1134/s0026893315050052] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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16
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Reis VM, Teixeira KRDS. Nitrogen fixing bacteria in the family Acetobacteraceae and their role in agriculture. J Basic Microbiol 2015; 55:931-49. [PMID: 25736602 PMCID: PMC7166518 DOI: 10.1002/jobm.201400898] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2014] [Accepted: 01/27/2015] [Indexed: 11/17/2022]
Abstract
For centuries, the Acetobacteraceae is known as a family that harbors many species of organisms of biotechnological importance for industry. Nonetheless, since 1988 representatives of this family have also been described as nitrogen fixing bacteria able to plant growth promotion by a variety of mechanisms. Nitrogen fixation is a biological process that guarantees that the atmospheric N2 is incorporated into organic matter by several bacterial groups. Most representatives of this group, also known as diazotrophic, are generally associated with soil rhizosphere of many plants and also establishing a more specific association living inside roots, leaves, and others plants tissues as endophyte. Their roles as plant growth-promoting microorganisms are generally related to increase in plant biomass, phosphate and other mineral solubilization, and plant pathogen control. Here, we report many of these plant growth-promoting processes related to nitrogen fixing species already described in Acetobacteraceae family, especially Gluconacetobacter diazotrophicus and their importance to agriculture. In addition, a brief review of the state of art of the phylogenetics, main physiological and biochemical characteristics, molecular and functional genomic data of this group of Acetobacteraceae is presented.
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