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Balestrazzi A, Calvio C, Macovei A, Pagano A, Laux P, Moutahir H, Rajjou L, Tani E, Chachalis D, Katsis C, Ghaouti L, Gmouh S, Majid S, Elleuch A, Hanin M, Khemakhem B, El Abed H, Nunes J, Araújo S, Benhamrouche A, Bersi M. Seed quality as a proxy of climate-ready orphan legumes: the need for a multidisciplinary and multi-actor vision. FRONTIERS IN PLANT SCIENCE 2024; 15:1388866. [PMID: 39148611 PMCID: PMC11325182 DOI: 10.3389/fpls.2024.1388866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Accepted: 07/12/2024] [Indexed: 08/17/2024]
Abstract
In developing countries, orphan legumes stand at the forefront in the struggle against climate change. Their high nutrient value is crucial in malnutrition and chronic diseases prevention. However, as the 'orphan' definition suggests, their seed systems are still underestimated and seed production is scanty. Seed priming is an effective, sustainable strategy to boost seed quality in orphan legumes for which up-to-date guidelines are required to guarantee reliable and reproducible results. How far are we along this path? What do we expect from seed priming? This brings to other relevant questions. What is the socio-economic relevance of orphan legumes in the Mediterranean Basin? How to potentiate a broader cultivation in specific regions? The case study of the BENEFIT-Med (Boosting technologies of orphan legumes towards resilient farming systems) project, developed by multidisciplinary research networks, envisions a roadmap for producing new knowledge and innovative technologies to improve seed productivity through priming, with the long-term objective of promoting sustainability and food security for/in the climate-sensitive regions. This review highlights the existing drawbacks that must be overcome before orphan legumes could reach the state of 'climate-ready crops'. Only by the integration of knowledge in seed biology, technology and agronomy, the barrier existing between research bench and local agricultural fields may be overcome, generating high-impact technical innovations for orphan legumes. We intend to provide a powerful message to encourage future research in line with the United Nations Agenda 2030 for Sustainable Development.
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Affiliation(s)
- Alma Balestrazzi
- Department of Biology and Biotechnology "L. Spallanzani", University of Pavia, Pavia, Italy
| | - Cinzia Calvio
- Department of Biology and Biotechnology "L. Spallanzani", University of Pavia, Pavia, Italy
| | - Anca Macovei
- Department of Biology and Biotechnology "L. Spallanzani", University of Pavia, Pavia, Italy
| | - Andrea Pagano
- Department of Biology and Biotechnology "L. Spallanzani", University of Pavia, Pavia, Italy
| | - Patrick Laux
- Institute of Meteorology and Climate Research (IMK-IFU), Karlsruhe Institute of Technology, Garmisch-Partenkirchen, Germany
| | - Hassane Moutahir
- Institute of Meteorology and Climate Research (IMK-IFU), Karlsruhe Institute of Technology, Garmisch-Partenkirchen, Germany
| | - Loїc Rajjou
- Université Paris-Saclay, National Research Institute for Agriculture, Food and the Environment (INRAE), AgroParisTech, Institut Jean-Pierre Bourgin (IJPB), Versailles, France
| | - Eleni Tani
- Laboratory of Plant Breeding and Biometry, Department of Crop Science, Agricultural University of Athens, Athens, Greece
| | - Dimosthenis Chachalis
- Department of Pesticides' Control and Phytopharmacy, Benaki Phytopathological Institute, Athens, Greece
| | | | - Lamiae Ghaouti
- Department of Plant Production, Protection and Biotechnology, Hassan II Institute of Agronomy and Veterinary Medicine, Rabat, Morocco
| | - Said Gmouh
- Laboratory Laboratory of Engineering and Materials (LIMAT), Faculty of Sciences Ben M'sick, University Hassan II of Casablanca, Casablanca, Morocco
| | - Sanaa Majid
- Laboratory GeMEV, Faculty of Sciences Aïn Chock, University Hassan II of Casablanca, Casablanca, Morocco
| | - Amine Elleuch
- Higher Institute of Biotechnology, University of Sfax, Sfax, Tunisia
| | - Moez Hanin
- Higher Institute of Biotechnology, University of Sfax, Sfax, Tunisia
| | - Bassem Khemakhem
- Higher Institute of Biotechnology, University of Sfax, Sfax, Tunisia
| | - Hanen El Abed
- Higher Institute of Biotechnology, University of Sfax, Sfax, Tunisia
| | - Joao Nunes
- Center Bio R&D Unit, Association BLC3-Technology and Innovation Campus, Oliveira do Hospital, Portugal
| | - Susana Araújo
- Center Bio R&D Unit, Association BLC3-Technology and Innovation Campus, Oliveira do Hospital, Portugal
| | - Aziz Benhamrouche
- Institute of Architecture and Earth Science, University Ferhat Abbas-Setif 1, Setif, Algeria
| | - Mohand Bersi
- Institute of Architecture and Earth Science, University Ferhat Abbas-Setif 1, Setif, Algeria
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Tripathi DK, Bhat JA, Antoniou C, Kandhol N, Singh VP, Fernie AR, Fotopoulos V. Redox Regulation by Priming Agents Toward a Sustainable Agriculture. PLANT & CELL PHYSIOLOGY 2024; 65:1087-1102. [PMID: 38591871 PMCID: PMC11287215 DOI: 10.1093/pcp/pcae031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2023] [Accepted: 03/21/2024] [Indexed: 04/10/2024]
Abstract
Plants are sessile organisms that are often subjected to a multitude of environmental stresses, with the occurrence of these events being further intensified by global climate change. Crop species therefore require specific adaptations to tolerate climatic variability for sustainable food production. Plant stress results in excess accumulation of reactive oxygen species leading to oxidative stress and loss of cellular redox balance in the plant cells. Moreover, enhancement of cellular oxidation as well as oxidative signals has been recently recognized as crucial players in plant growth regulation under stress conditions. Multiple roles of redox regulation in crop production have been well documented, and major emphasis has focused on key redox-regulated proteins and non-protein molecules, such as NAD(P)H, glutathione, peroxiredoxins, glutaredoxins, ascorbate, thioredoxins and reduced ferredoxin. These have been widely implicated in the regulation of (epi)genetic factors modulating growth and health of crop plants, with an agricultural context. In this regard, priming with the employment of chemical and biological agents has emerged as a fascinating approach to improve plant tolerance against various abiotic and biotic stressors. Priming in plants is a physiological process, where prior exposure to specific stressors induces a state of heightened alertness, enabling a more rapid and effective defense response upon subsequent encounters with similar challenges. Priming is reported to play a crucial role in the modulation of cellular redox homeostasis, maximizing crop productivity under stress conditions and thus achieving yield security. By taking this into consideration, the present review is an up-to-date critical evaluation of promising plant priming technologies and their role in the regulation of redox components toward enhanced plant adaptations to extreme unfavorable environmental conditions. The challenges and opportunities of plant priming are discussed, with an aim of encouraging future research in this field toward effective application of priming in stress management in crops including horticultural species.
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Affiliation(s)
- Durgesh Kumar Tripathi
- Crop Nano Biology and Molecular Stress Physiology Lab, Amity Institute of Organic Agriculture, Amity University Uttar Pradesh, AUUP Campus Sector-125, Noida 201313, India
| | | | - Chrystalla Antoniou
- Department of Agricultural Sciences, Biotechnology and Food Science, Cyprus University of Technology, Limassol 3036, Cyprus
| | - Nidhi Kandhol
- Crop Nano Biology and Molecular Stress Physiology Lab, Amity Institute of Organic Agriculture, Amity University Uttar Pradesh, AUUP Campus Sector-125, Noida 201313, India
| | - Vijay Pratap Singh
- Plant Physiology Laboratory, Department of Botany, C.M.P. Degree College, A Constituent Post Graduate College of University of Allahabad, Prayagraj 211002, India
| | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm 14476, Germany
| | - Vasileios Fotopoulos
- Department of Agricultural Sciences, Biotechnology and Food Science, Cyprus University of Technology, Limassol 3036, Cyprus
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Blázquez MA. Polyamines: Their Role in Plant Development and Stress. ANNUAL REVIEW OF PLANT BIOLOGY 2024; 75:95-117. [PMID: 38382905 DOI: 10.1146/annurev-arplant-070623-110056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/23/2024]
Abstract
This review focuses on the intricate relationship between plant polyamines and the genetic circuits and signaling pathways that regulate various developmental programs and the defense responses of plants when faced with biotic and abiotic aggressions. Particular emphasis is placed on genetic evidence supporting the involvement of polyamines in specific processes, such as the pivotal role of thermospermine in regulating xylem cell differentiation and the significant contribution of polyamine metabolism in enhancing plant resilience to drought. Based on the numerous studies describing effects of the manipulation of plant polyamine levels, two conceptually different mechanisms for polyamine activity are discussed: direct participation of polyamines in translational regulation and the indirect production of hydrogen peroxide as a defensive mechanism against pathogens. By describing the multifaceted functions of polyamines, this review underscores the profound significance of these compounds in enabling plants to adapt and thrive in challenging environments.
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Affiliation(s)
- Miguel A Blázquez
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-Universitat Politècnica de València, Valencia, Spain;
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Tondepu SAG, Manova V, Vadivel D, Dondi D, Pagano A, Macovei A. MicroRNAs potentially targeting DDR-related genes are differentially expressed upon exposure to γ-rays during seed germination in wheat. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 212:108771. [PMID: 38820913 DOI: 10.1016/j.plaphy.2024.108771] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2023] [Revised: 05/08/2024] [Accepted: 05/22/2024] [Indexed: 06/02/2024]
Abstract
DNA damage response (DDR), a complex network of cellular pathways that cooperate to sense and repair DNA lesions, is regulated by several mechanisms, including microRNAs. As small, single-stranded RNA molecules, miRNAs post-transcriptionally regulate their target genes by mRNA cleavage or translation inhibition. Knowledge regarding miRNAs influence on DDR-associated genes is still scanty in plants. In this work, an in silico analysis was performed to identify putative miRNAs that could target DDR sensors, signal transducers and effector genes in wheat. Selected putative miRNA-gene pairs were tested in an experimental system where seeds from two wheat mutant lines were irradiated with 50 Gy and 300 Gy gamma(γ)-rays. To evaluate the effect of the treatments on wheat germination, phenotypic and molecular (DNA damage, ROS accumulation, gene/miRNA expression profile) analyses have been carried out. The results showed that in dry seeds ROS accumulated immediately after irradiation and decayed soon after while the negative impact on seedling growth was supported by enhanced accumulation of DNA damage. When a qRT-PCR analysis was performed, the selected miRNAs and DDR-related genes were differentially modulated by the γ-rays treatments in a dose-, time- and genotype-dependent manner. A significant negative correlation was observed between the expression of tae-miR5086 and the RAD50 gene, involved in double-strand break sensing and homologous recombination repair, one of the main processes that repairs DNA breaks induced by γ-rays. The results hereby reported can be relevant for wheat breeding programs and screening of the radiation response and tolerance of novel wheat varieties.
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Affiliation(s)
- Sri Amarnadh Gupta Tondepu
- Department of Biology and Biotechnology "L. Spallanzani", University of Pavia, Via Adolfo Ferrata 9, 27100, Pavia, Italy
| | - Vasilissa Manova
- Institute of Plant Physiology and Genetics, Bulgarian Academy of Sciences "Acad. G. Bonchev", Street Bldg. 21, 1113, Sofia, Bulgaria.
| | - Dhanalakshmi Vadivel
- Department of Chemistry, University of Pavia, Via Torquato Taramelli 12, 27100, Pavia, Italy
| | - Daniele Dondi
- Department of Chemistry, University of Pavia, Via Torquato Taramelli 12, 27100, Pavia, Italy
| | - Andrea Pagano
- Department of Biology and Biotechnology "L. Spallanzani", University of Pavia, Via Adolfo Ferrata 9, 27100, Pavia, Italy
| | - Anca Macovei
- Department of Biology and Biotechnology "L. Spallanzani", University of Pavia, Via Adolfo Ferrata 9, 27100, Pavia, Italy.
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Punia A, Kumari M, Chouhan M, Saini V, Joshi R, Kumar A, Kumar R. Proteomic and metabolomic insights into seed germination of Ferula assa-foetida. J Proteomics 2024; 300:105176. [PMID: 38604334 DOI: 10.1016/j.jprot.2024.105176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 03/01/2024] [Accepted: 04/08/2024] [Indexed: 04/13/2024]
Abstract
Cold stratification is known to affect the speed of seed germination; however, its regulation at the molecular level in Ferula assa-foetida remains ambiguous. Here, we used cold stratification (4 °C in the dark) to induce germination in F. assa-foetida and adopted a proteomic and metabolomic approach to understand the molecular mechanism of germination. Compared to the control, we identified 209 non-redundant proteins and 96 metabolites in germinated F. assa-foetida seed. Results highlight the common and unique regulatory mechanisms like signaling cascade, reactivation of energy metabolism, activation of ROS scavenging system, DNA repair, gene expression cascade, cytoskeleton, and cell wall modulation in F. assa-foetida germination. A protein-protein interaction network identifies 18 hub protein species central to the interactome and could be a key player in F. assa-foetida germination. Further, the predominant metabolic pathways like glucosinolate biosynthesis, arginine and proline metabolism, cysteine and methionine metabolism, aminoacyl-tRNA biosynthesis, and carotenoid biosynthesis in germinating seed may indicate the regulation of carbon and nitrogen metabolism is prime essential to maintain the physiology of germinating seedlings. The findings of this study provide a better understanding of cold stratification-induced seed germination, which might be utilized for genetic modification and traditional breeding of Ferula assa-foetida. SIGNIFICANCE: Seed germination is the fundamental checkpoint for plant growth and development, which has ecological significance. Ferula assa-foetida L., commonly known as "asafoetida," is a medicinal and food crop with huge therapeutic potential. To date, our understanding of F. assa-foetida seed germination is rudimentary. Therefore, studying the molecular mechanism that governs dormancy decay and the onset of germination in F. assa-foetida is essential for understanding the basic principle of seed germination, which could offer to improve genetic modification and traditional breeding.
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Affiliation(s)
- Ashwani Punia
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology (IHBT), Palampur 176061, HP, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Manglesh Kumari
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology (IHBT), Palampur 176061, HP, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Monika Chouhan
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology (IHBT), Palampur 176061, HP, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Vishal Saini
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology (IHBT), Palampur 176061, HP, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Robin Joshi
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology (IHBT), Palampur 176061, HP, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Ashok Kumar
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology (IHBT), Palampur 176061, HP, India; Agrotechnology Division, CSIR-Institute of Himalayan Bioresource Technology (IHBT), Palampur 176061, HP, India
| | - Rajiv Kumar
- Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology (IHBT), Palampur 176061, HP, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India.
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Santhoshkumar R, Hima Parvathy A, Soniya EV. Biocompatible silver nanoparticles as nanopriming mediators for improved rice germination and root growth: A transcriptomic perspective. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 210:108645. [PMID: 38663266 DOI: 10.1016/j.plaphy.2024.108645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 04/06/2024] [Accepted: 04/17/2024] [Indexed: 05/12/2024]
Abstract
Silver nanoparticles (AgNPs) have an important role in agriculture since they have several applications that are essential for the enhanced yield of crops. Furthermore, they act as nano-pesticides, delivering a proper dose to the target plants without releasing unwanted pesticides into the environment. Upholding the sustainable nano agriculture, biocompatible silver nanoparticles were synthesised utilising Piper colubrinum Link. leaf extract. Different characterization methods (TEM, EDX and XRD) revealed that AgNPs were successfully formed and coated with phytochemicals that constituted the plant extract. Enhanced root development during the early post-germination phase is crucial for the success of direct seeding in rice cultivation. The effects of AgNPs on the growth of plant roots are poorly understood. In this work, Piper colubrinum mediated AgNPs-primed Oryza sativa L. seeds, at various concentrations (0, 50, 80, 100, and 150 mg/L), exceeded typical hydro-primed controls in terms of germination and seedling growth. Oryza sativa L. treated with AgNPs at a concentration of 80 mg/L enhanced root elongation. Additionally, exposure to AgNPs significantly enhanced the content of chlorophyll. The Kyoto Encyclopedia of Genes and Genomes (KEGG) study revealed that the identified pathways like Aromatic amino acid biosynthesis genes, Fatty acid biosynthesis genes, and Carotenoid biosynthesis genes were the most enriched. Some of the genes associated with root growth and development like glucosyltransferases, Glutathione pathway genes, Calcium-ion binding pathway genes, Peroxidase precursor and Nitrilase-associated protein were up regulated. Overall, AgNPs treatments promoted seed germination, growth, chlorophyll content and gene expression patterns, which might be attributable to the beneficial effects of AgNPs on rice.
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Affiliation(s)
- R Santhoshkumar
- Transdisciplinary Biology, Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram, Kerala, India
| | - A Hima Parvathy
- Transdisciplinary Biology, Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram, Kerala, India
| | - E V Soniya
- Transdisciplinary Biology, Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram, Kerala, India.
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Dey S, Sen Raychaudhuri S. Methyl jasmonate improves selenium tolerance via regulating ROS signalling, hormonal crosstalk and phenylpropanoid pathway in Plantago ovata. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 209:108533. [PMID: 38520967 DOI: 10.1016/j.plaphy.2024.108533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 02/28/2024] [Accepted: 03/13/2024] [Indexed: 03/25/2024]
Abstract
Selenium (Se) toxicity is an emerging contaminant of global concern. It is known to cause oxidative stress, affecting plant growth and yield. Plantago ovata, a major cash crop known for its medicinal properties, is often cultivated in Se-contaminated soil. Thus, the aim of this study was to evaluate the use of methyl jasmonate (MeJA) seed priming technique to mitigate Se-induced phytotoxicity. The results demonstrated that Se stress inhibited P. ovata growth, biomass and lowered chlorophyll content in a dose-dependent manner. Treatment with 1 μM MeJA enhanced the antioxidant defence system via ROS signalling and upregulated key enzymes of phenylpropanoid pathway, PAL (1.9 times) and CHI (5.4 times) in comparison to control. Caffeic acid, Vanillic acid, Chlorogenic acid, Coumaric acid and Luteoloside were the most abundant polyphenols. Enzymatic antioxidants involved in ROS scavenging, such as CAT (up to 1.3 times) and GPOX (up to 1.4 times) were raised, while SOD (by 0.6 times) was reduced. There was an upregulation of growth-inducible hormones, IAA (up to 2.1 fold) and GA (up to 1.5 fold) whereas, the stress-responsive hormones ABA (by 0.6 fold) and SA (by 0.5 fold) were downregulated. The alleviation of Se toxicity was also evident from the decrease in H2O2 and MDA contents under MeJA treatment. These findings suggest that MeJA can effectively improve Se tolerance and nutraceutical value in P. ovata by modulating the phytohormone regulatory network, redox homeostasis and elicits accumulation of polyphenols. Therefore, MeJA seed priming could be an efficient way to enhance stress resilience and sustainable crop production.
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Affiliation(s)
- Sankalan Dey
- Department of Biophysics, Molecular Biology and Bioinformatics, University of Calcutta, 92, A.P.C. Road, Kolkata - 700009, West Bengal, India
| | - Sarmistha Sen Raychaudhuri
- Department of Biophysics, Molecular Biology and Bioinformatics, University of Calcutta, 92, A.P.C. Road, Kolkata - 700009, West Bengal, India.
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Wazeer H, Shridhar Gaonkar S, Doria E, Pagano A, Balestrazzi A, Macovei A. Plant-Based Biostimulants for Seeds in the Context of Circular Economy and Sustainability. PLANTS (BASEL, SWITZERLAND) 2024; 13:1004. [PMID: 38611532 PMCID: PMC11013454 DOI: 10.3390/plants13071004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Revised: 03/28/2024] [Accepted: 03/30/2024] [Indexed: 04/14/2024]
Abstract
Plant-based biostimulants (PBs), agents rich in bioactive compounds, are emerging as key players able to sustainably improve plant growth and crop productivity to address food security. PBs are generally applied as foliar spray or soil irrigation, while more recently, the application as seed priming treatments is being envisaged as a highly sustainable method to also improve seed quality and germination. Therefore, this review proposes to explore the use of PBs for the seeds industry, specifically discussing about the relevance of product market values, sustainable methods for their production, why and how PBs are used for seed priming, and pinpointing specific strengths and challenges. The collected research studies indicate that PBs applied to seeds result in improved germination, seedling growth, and stress tolerance, although the molecular mechanisms at work are still largely overlooked. The high variability of bioactive molecules and used sources point towards a huge reservoir of nature-based solutions in support of sustainable agriculture practices.
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Affiliation(s)
| | | | - Enrico Doria
- Department of Biology and Biotechnology ‘L. Spallanzani’, University of Pavia, Via Ferrata 9, 27100 Pavia, Italy; (H.W.); (S.S.G.); (A.P.); (A.B.)
| | | | | | - Anca Macovei
- Department of Biology and Biotechnology ‘L. Spallanzani’, University of Pavia, Via Ferrata 9, 27100 Pavia, Italy; (H.W.); (S.S.G.); (A.P.); (A.B.)
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Paul A, Mondal S, Chakraborty K, Biswas AK. Moving forward to understand the alteration of physiological mechanism by seed priming with different halo-agents under salt stress. PLANT MOLECULAR BIOLOGY 2024; 114:24. [PMID: 38457044 DOI: 10.1007/s11103-024-01425-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Accepted: 01/30/2024] [Indexed: 03/09/2024]
Abstract
Soil salinity hampers the survival and productivity of crops. To minimize salt-associated damages in plant, better salt management practices in agriculture have become a prerequisite. Seed priming with different halo-agents is a technique, which improves the primed plant's endurance to tackle sodium. Salt tolerance is achieved in tolerant plants through fundamental physiological mechanisms- ion-exclusion and tissue tolerance, and salt-tolerant plants may (Na+ accumulators) or may not (Na+ excluders) allow sodium movement to leaves. While Na+ excluders depend on ion exclusion in roots, Na+ accumulators are proficient Na+ managers that can compartmentalize Na+ in leaves and use them beneficially as inexpensive osmoticum. Salt-sensitive plants are Na+ accumulators, but their inherent tissue tolerance ability and ion-exclusion process are insufficient for tolerance. Seed priming with different halo-agents aids in 'rewiring' of the salt tolerance mechanisms of plants. The resetting of the salt tolerance mechanism is not universal for every halo-agent and might vary with halo-agents. Here, we review the physiological mechanisms that different halo-agents target to confer enhanced salt tolerance in primed plants. Calcium and potassium-specific halo-agents trigger Na+ exclusion in roots, thus ensuring a low amount of Na+ in leaves. In contrast, Na+-specific priming agents favour processes for Na+ inclusion in leaves, improve plant tissue tolerance or vacuolar sequestration, and provide the greatest benefit to salt-sensitive and sodium accumulating plants. Overall, this review will help to understand the underlying mechanism behind plant's inherent nature towards salt management and its amelioration with different halo-agents, which helps to optimize crop stress performance.
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Affiliation(s)
- Alivia Paul
- Plant Physiology and Biochemistry Laboratory, Department of Botany, CAS, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
- Cell Biology Laboratory, Department of Botany, CAS, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India
| | - Subhankar Mondal
- Crop Physiology and Biochemistry Division, ICAR-National Rice Research Institute, Cuttack, Odisha, 753006, India
- Department of Botany, Utkal University, Vani Vihar, Bhubaneswar, Odisha, 751004, India
| | - Koushik Chakraborty
- Crop Physiology and Biochemistry Division, ICAR-National Rice Research Institute, Cuttack, Odisha, 753006, India
| | - Asok K Biswas
- Plant Physiology and Biochemistry Laboratory, Department of Botany, CAS, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India.
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Waterworth W, Balobaid A, West C. Seed longevity and genome damage. Biosci Rep 2024; 44:BSR20230809. [PMID: 38324350 PMCID: PMC11111285 DOI: 10.1042/bsr20230809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 02/06/2024] [Accepted: 02/07/2024] [Indexed: 02/08/2024] Open
Abstract
Seeds are the mode of propagation for most plant species and form the basis of both agriculture and ecosystems. Desiccation tolerant seeds, representative of most crop species, can survive maturation drying to become metabolically quiescent. The desiccated state prolongs embryo viability and provides protection from adverse environmental conditions, including seasonal periods of drought and freezing often encountered in temperate regions. However, the capacity of the seed to germinate declines over time and culminates in the loss of seed viability. The relationship between environmental conditions (temperature and humidity) and the rate of seed deterioration (ageing) is well defined, but less is known about the biochemical and genetic factors that determine seed longevity. This review will highlight recent advances in our knowledge that provide insight into the cellular stresses and protective mechanisms that promote seed survival, with a focus on the roles of DNA repair and response mechanisms. Collectively, these pathways function to maintain the germination potential of seeds. Understanding the molecular basis of seed longevity provides important new genetic targets for the production of crops with enhanced resilience to changing climates and knowledge important for the preservation of plant germplasm in seedbanks.
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Affiliation(s)
- Wanda Waterworth
- Centre for Plant Sciences, University of Leeds, Woodhouse Lane, Leeds LS2
9JT, U.K
| | - Atheer Balobaid
- Centre for Plant Sciences, University of Leeds, Woodhouse Lane, Leeds LS2
9JT, U.K
| | - Chris West
- Centre for Plant Sciences, University of Leeds, Woodhouse Lane, Leeds LS2
9JT, U.K
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Dueñas C, Pagano A, Calvio C, Srikanthan DS, Slamet-Loedin I, Balestrazzi A, Macovei A. Genotype-specific germination behavior induced by sustainable priming techniques in response to water deprivation stress in rice. FRONTIERS IN PLANT SCIENCE 2024; 15:1344383. [PMID: 38390302 PMCID: PMC10881859 DOI: 10.3389/fpls.2024.1344383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2023] [Accepted: 01/22/2024] [Indexed: 02/24/2024]
Abstract
Water stress brought about by climate change is among the major global concerns threatening food security. Rice is an important staple food which requires high water resources. Being a semi-aquatic plant, rice is particularly susceptible to drought. The aim of this work was to develop techniques directed to promote rice resilience to water deprivation stress during germination by implementing specific seed priming treatments. Five popular Italian rice varieties were subjected to priming treatments using novel, sustainable solutions, like poly-gamma-glutamic acid (γ-PGA), denatured γ-PGA (dPGA), and iron (Fe) pulsing, alone or in combination. The effect of the developed priming methods was tested under optimal conditions as well as under water deprivation stress imposed by polyethylene glycol (PEG) treatments. The priming efficacy was phenotypically determined in terms of germination behavior by measuring a series of parameters (germinability, germination index, mean germination time, seed vigor index, root and shoot length, germination stress tolerance index). Biochemical analyses were carried out to measure the levels of iron uptake and accumulation of reactive oxygen species (ROS). Integrative data analyses revealed that the rice varieties exhibited a strong genotype- and treatment-specific germination behavior. PEG strongly inhibited germination while most of the priming treatments were able to rescue it in all varieties tested except for Unico, which can be defined as highly stress sensitive. Molecular events (DNA repair, antioxidant response, iron homeostasis) associated with the transition from seed to seedling were monitored in terms of changes in gene expression profiles in two varieties sensitive to water deprivation stress with different responses to priming. The investigated genes appeared to be differentially expressed in a genotype-, priming treatment-, stress- and stage-dependent manner. The proposed seed priming treatments can be envisioned as sustainable and versatile agricultural practices that could help in addressing the impact of climate challenges on the agri-food system.
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Affiliation(s)
- Conrado Dueñas
- Department of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy
| | - Andrea Pagano
- Department of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy
| | - Cinzia Calvio
- Department of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy
| | | | - Inez Slamet-Loedin
- Trait and Genome Engineering Cluster, Rice Breeding Innovations, International Rice Research Institute, Metro Manila, Philippines
| | - Alma Balestrazzi
- Department of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy
| | - Anca Macovei
- Department of Biology and Biotechnology 'L. Spallanzani', University of Pavia, Pavia, Italy
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Zhou H, Shi H, Yang Y, Feng X, Chen X, Xiao F, Lin H, Guo Y. Insights into plant salt stress signaling and tolerance. J Genet Genomics 2024; 51:16-34. [PMID: 37647984 DOI: 10.1016/j.jgg.2023.08.007] [Citation(s) in RCA: 25] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 08/21/2023] [Accepted: 08/22/2023] [Indexed: 09/01/2023]
Abstract
Soil salinization is an essential environmental stressor, threatening agricultural yield and ecological security worldwide. Saline soils accumulate excessive soluble salts which are detrimental to most plants by limiting plant growth and productivity. It is of great necessity for plants to efficiently deal with the adverse effects caused by salt stress for survival and successful reproduction. Multiple determinants of salt tolerance have been identified in plants, and the cellular and physiological mechanisms of plant salt response and adaption have been intensely characterized. Plants respond to salt stress signals and rapidly initiate signaling pathways to re-establish cellular homeostasis with adjusted growth and cellular metabolism. This review summarizes the advances in salt stress perception, signaling, and response in plants. A better understanding of plant salt resistance will contribute to improving crop performance under saline conditions using multiple engineering approaches. The rhizosphere microbiome-mediated plant salt tolerance as well as chemical priming for enhanced plant salt resistance are also discussed in this review.
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Affiliation(s)
- Huapeng Zhou
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, Sichuan 610064, China.
| | - Haifan Shi
- College of Grassland Science, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China
| | - Yongqing Yang
- State Key Laboratory of Plant Environmental Resilience, China Agricultural University, Beijing 100193, China
| | - Xixian Feng
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, Sichuan 610064, China
| | - Xi Chen
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, Sichuan 610064, China
| | - Fei Xiao
- Xinjiang Key Laboratory of Biological Resources and Genetic Engineering, College of Life Science and Technology, Xinjiang University, Urumqi, Xinjiang 830046, China
| | - Honghui Lin
- Key Laboratory of Bio-Resource and Eco-Environment of Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, Sichuan 610064, China
| | - Yan Guo
- State Key Laboratory of Plant Environmental Resilience, China Agricultural University, Beijing 100193, China.
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Tian Y, Gama-Arachchige NS, Zhao M. Trends in Seed Priming Research in the Past 30 Years Based on Bibliometric Analysis. PLANTS (BASEL, SWITZERLAND) 2023; 12:3483. [PMID: 37836223 PMCID: PMC10575273 DOI: 10.3390/plants12193483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Revised: 10/01/2023] [Accepted: 10/03/2023] [Indexed: 10/15/2023]
Abstract
Seed priming (SP) treatments are widely used in agriculture and restoration to improve seed germination and seedling vigor. Although there exists a considerable amount of scientific literature on SP, it has seldom undergone visual and quantitative analyses. To gain insights into the patterns observed in SP research over the last three decades, we conducted a bibliometric analysis using the Science Citation Index-Expanded (SCI-E) database, aiming to minimize the similarity score in plagiarism detection. This analysis offers a thorough examination of yearly publications, temporal patterns in keyword usage, the top-performing journals, authors, institutions, and countries within the field of SP. Our research findings suggest a steady annual increase of 10.59% in the volume of SP publications, accompanied by a significant upward trajectory in the average citations received per paper annually. According to the analysis of keywords, it was found that "priming" and "germination" emerged as the most frequently used terms in the field of SP research. Seed Science and Technology ranked first among the top journals, and Plant Physiology had greater influence in the field of SP in terms of number of citations. The majority of the top 10 productive institutions were situated in developing countries. In addition, these nations exhibited the highest volume of published works and citations. Our analysis revealed a shift in research focus within the field of SP over the past three decades, transitioning from agricultural science to encompass plant science and environmental science. With the growing recognition of SP's research across different disciplines, there exist abundant prospects for international and interdisciplinary partnerships, collaborative organizations, and progress in this field.
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Affiliation(s)
- Yu Tian
- Jilin Provincial Key Laboratory of Tree and Grass Genetics and Breeding, College of Forestry and Grassland Science, Jilin Agricultural University, Changchun 130118, China;
| | | | - Ming Zhao
- State Key Laboratory of Vegetation & Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
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Gupta B, Shrestha J. Editorial: Abiotic stress adaptation and tolerance mechanisms in crop plants. FRONTIERS IN PLANT SCIENCE 2023; 14:1278895. [PMID: 37810379 PMCID: PMC10560036 DOI: 10.3389/fpls.2023.1278895] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2023] [Accepted: 09/12/2023] [Indexed: 10/10/2023]
Affiliation(s)
- Bhaskar Gupta
- Department of Zoology, Government General Degree College, Singur, West Bengal, India
| | - Jiban Shrestha
- Nepal Agricultural Research Council, National Plant Breeding and Genetics Research Centre, Khumaltar, Lalitpur, Nepal
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Pagano A, Kunz L, Dittmann A, Araújo SDS, Macovei A, Shridhar Gaonkar S, Sincinelli F, Wazeer H, Balestrazzi A. Changes in Medicago truncatula seed proteome along the rehydration-dehydration cycle highlight new players in the genotoxic stress response. FRONTIERS IN PLANT SCIENCE 2023; 14:1188546. [PMID: 37409306 PMCID: PMC10319343 DOI: 10.3389/fpls.2023.1188546] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Accepted: 05/24/2023] [Indexed: 07/07/2023]
Abstract
Introduction Several molecular aspects underlying the seed response to priming and the resulting vigor profile are still poorly understood. Mechanisms involved in genome maintenance deserve attention since the balance between stimulation of germination and DNA damage accumulation versus active repair is a key determinant for designing successful seed priming protocols. Methods Changes in the Medicago truncatula seed proteome were investigated in this study, using discovery mass spectrometry and label-free quantification, along the rehydration-dehydration cycle of a standard vigorization treatment (hydropriming plus dry-back), and during post-priming imbibition. Resuts and discussion From 2056 to 2190 proteins were detected in each pairwise comparison, among which six were differentially accumulated and 36 were detected only in one condition. The following proteins were selected for further investigation: MtDRP2B (DYNAMIN-RELATED PROTEIN), MtTRXm4 (THIOREDOXIN m4), and MtASPG1 (ASPARTIC PROTEASE IN GUARD CELL 1) showing changes in seeds under dehydration stress; MtITPA (INOSINE TRIPHOSPHATE PYROPHOSPHORYLASE), MtABA2 (ABSCISIC ACID DEFICIENT 2), MtRS2Z32 (SERINE/ARGININE-RICH SPLICING FACTOR RS2Z32), and MtAQR (RNA HELICASE AQUARIUS) that were differentially regulated during post-priming imbibition. Changes in the corresponding transcript levels were assessed by qRT-PCR. In animal cells, ITPA hydrolyses 2'-deoxyinosine triphosphate and other inosine nucleotides, preventing genotoxic damage. A proof of concept was performed by imbibing primed and control M. truncatula seeds in presence/absence of 20 mM 2'-deoxyinosine (dI). Results from comet assay highlighted the ability of primed seeds to cope with dI-induced genotoxic damage. The seed repair response was assessed by monitoring the expression profiles of MtAAG (ALKYL-ADENINE DNA GLYCOSILASE) and MtEndoV (ENDONUCLEASE V) genes that participate in the repair of the mismatched I:T pair in BER (base excision repair) and AER (alternative excision repair) pathways, respectively.
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Affiliation(s)
- Andrea Pagano
- Department of Biology and Biotechnology ‘L. Spallanzani’, University of Pavia, Pavia, Italy
| | - Laura Kunz
- Functional Genomics Center Zurich (FGCZ), University of Zurich/Eidgenossische Technische Hochschule (ETH) Zurich, Zurich, Switzerland
| | - Antje Dittmann
- Functional Genomics Center Zurich (FGCZ), University of Zurich/Eidgenossische Technische Hochschule (ETH) Zurich, Zurich, Switzerland
| | - Susana De Sousa Araújo
- Association BLC3 - Campus of Technology and Innovation, Centre BIO R&D Unit | North Delegation, Macedo de Cavaleiros, Portugal
| | - Anca Macovei
- Department of Biology and Biotechnology ‘L. Spallanzani’, University of Pavia, Pavia, Italy
- National Biodiversity Future Center (NBFC), Palermo, Italy
| | | | - Federico Sincinelli
- Department of Biology and Biotechnology ‘L. Spallanzani’, University of Pavia, Pavia, Italy
| | - Hisham Wazeer
- Department of Biology and Biotechnology ‘L. Spallanzani’, University of Pavia, Pavia, Italy
| | - Alma Balestrazzi
- Department of Biology and Biotechnology ‘L. Spallanzani’, University of Pavia, Pavia, Italy
- National Biodiversity Future Center (NBFC), Palermo, Italy
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