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Xiromerisiou G, Dadouli K, Marogianni C, Provatas A, Ntellas P, Rikos D, Stathis P, Georgouli D, Loules G, Zamanakou M, Hadjigeorgiou GM. A novel homozygous SACS mutation identified by whole exome sequencing-genotype phenotype correlations of all published cases. J Mol Neurosci 2019; 70:131-141. [PMID: 31701440 DOI: 10.1007/s12031-019-01410-z] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2019] [Accepted: 09/26/2019] [Indexed: 02/07/2023]
Abstract
ARSACS is an autosomal recessive disorder characterized by ataxia, spasticity, and polyneuropathy. A plethora of worldwide distributed mutations have been described so far. Here, we report two brothers, born to non-consanguineous parents, presenting with cerebellar ataxia and peripheral neuropathy. Whole-exome sequencing revealed the presence of a novel homozygous variant in the SACS gene. The variant was confirmed by Sanger sequencing and found at heterozygous state in both parents. This is the first reported mutation in this gene, in Greek population. This case report further highlights the growing trend of identifying genetic diseases previously restricted to single, ethnically isolated regions in many different ethnic groups worldwide. Additionally, we performed a systematic review of all published cases with SACs mutations. ARSACS seems to be an important cause of ataxia and many different types of mutations have been identified, mainly located in exon 10. We evaluated the mutation pathogenicity in all previously reported cases to investigate possible phenotype-genotype correlations. We managed to find a correlation between the pathogenicity of mutations, severity of the phenotype, and age of onset of ARSACS. Greater mutation numbers in different populations will be important and mutation-specific functional studies will be essential to identify the pathogenicity of the various ARSACS variants.
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Affiliation(s)
- Georgia Xiromerisiou
- Department of Neurology, University Hospital of Larissa, Faculty of Medicine, School of Health Sciences, University of Thessaly, Larissa, Greece.
| | - Katerina Dadouli
- Department of Hygiene and Epidemiology, Faculty of Medicine, University of Thessaly, Larissa, Greece
| | - Chrysoula Marogianni
- Department of Neurology, University of Thessaly, University Hospital of Larissa, Larissa, Greece
| | - Antonios Provatas
- Department of Neurology, University of Thessaly, University Hospital of Larissa, Larissa, Greece
| | - Panagiotis Ntellas
- Department of Medical Oncology, University Hospital of Ioannina, Ioannina, Greece
| | - Dimitrios Rikos
- Department of Neurology, University of Thessaly, University Hospital of Larissa, Larissa, Greece
| | - Pantelis Stathis
- Department of Neurology, Mediterraneo Hospital, Glyfada, Athens, Greece
| | - Despina Georgouli
- Department of Neurology, University of Thessaly, University Hospital of Larissa, Larissa, Greece
| | | | | | - Georgios M Hadjigeorgiou
- Department of Neurology, Laboratory of Neurogenetics, University of Thessaly, University Hospital of Larissa, Larissa, Greece.,Department of Neurology, Medical School, University of Cyprus, Nicosia, Cyprus
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Pilliod J, Moutton S, Lavie J, Maurat E, Hubert C, Bellance N, Anheim M, Forlani S, Mochel F, N'Guyen K, Thauvin-Robinet C, Verny C, Milea D, Lesca G, Koenig M, Rodriguez D, Houcinat N, Van-Gils J, Durand CM, Guichet A, Barth M, Bonneau D, Convers P, Maillart E, Guyant-Marechal L, Hannequin D, Fromager G, Afenjar A, Chantot-Bastaraud S, Valence S, Charles P, Berquin P, Rooryck C, Bouron J, Brice A, Lacombe D, Rossignol R, Stevanin G, Benard G, Burglen L, Durr A, Goizet C, Coupry I. New practical definitions for the diagnosis of autosomal recessive spastic ataxia of Charlevoix-Saguenay. Ann Neurol 2015; 78:871-86. [PMID: 26288984 DOI: 10.1002/ana.24509] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2015] [Revised: 08/12/2015] [Accepted: 08/14/2015] [Indexed: 12/29/2022]
Abstract
OBJECTIVE Autosomal recessive spastic ataxia of Charlevoix-Saguenay (ARSACS) is caused by mutations in the SACS gene. SACS encodes sacsin, a protein whose function remains unknown, despite the description of numerous protein domains and the recent focus on its potential role in the regulation of mitochondrial physiology. This study aimed to identify new mutations in a large population of ataxic patients and to functionally analyze their cellular effects in the mitochondrial compartment. METHODS A total of 321 index patients with spastic ataxia selected from the SPATAX network were analyzed by direct sequencing of the SACS gene, and 156 patients from the ATAXIC project presenting with congenital ataxia were investigated either by targeted or whole exome sequencing. For functional analyses, primary cultures of fibroblasts were obtained from 11 patients carrying either mono- or biallelic variants, including 1 case harboring a large deletion encompassing the entire SACS gene. RESULTS We identified biallelic SACS variants in 33 patients from SPATAX, and in 5 nonprogressive ataxia patients from ATAXIC. Moreover, a drastic and recurrent alteration of the mitochondrial network was observed in 10 of the 11 patients tested. INTERPRETATION Our results permit extension of the clinical and mutational spectrum of ARSACS patients. Moreover, we suggest that the observed mitochondrial network anomalies could be used as a trait biomarker for the diagnosis of ARSACS when SACS molecular results are difficult to interpret (ie, missense variants and heterozygous truncating variant). Based on our findings, we propose new diagnostic definitions for ARSACS using clinical, genetic, and cellular criteria.
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Affiliation(s)
- Julie Pilliod
- Rare Diseases Laboratory: Genetics and Metabolism, University of Bordeaux, Bordeaux, France
| | - Sébastien Moutton
- Rare Diseases Laboratory: Genetics and Metabolism, University of Bordeaux, Bordeaux, France.,Medical Genetics Service, Pellegrin University Hospital Center, Bordeaux, France
| | - Julie Lavie
- Rare Diseases Laboratory: Genetics and Metabolism, University of Bordeaux, Bordeaux, France
| | - Elise Maurat
- Rare Diseases Laboratory: Genetics and Metabolism, University of Bordeaux, Bordeaux, France
| | - Christophe Hubert
- Functional Genomics Center, University of Bordeaux, Bordeaux, France
| | - Nadège Bellance
- Rare Diseases Laboratory: Genetics and Metabolism, University of Bordeaux, Bordeaux, France
| | - Mathieu Anheim
- Neurology Service, Strasbourg University Hospitals, Strasbourg, France.,Molecular Cell Biology Genetics Institute, INSERM U964/CNRS UMR7104, University of Strasbourg, Illkirch-Graffenstaden, France.,Strasbourg Federation of Translational Medicine, University of Strasbourg, Illkirch-Graffenstaden, France
| | - Sylvie Forlani
- Genetics Service, Pitié-Salpêtrière Hospital, Public Hospital Network of Paris, Paris, France
| | - Fanny Mochel
- Genetics Service, Pitié-Salpêtrière Hospital, Public Hospital Network of Paris, Paris, France.,Brain and Spinal Cord Institute, INSERM U1127, CNRS UMR7225, Sorbonne Universities-Pierre and Marie Curie University, Paris, France
| | - Karine N'Guyen
- Department of Medical Genetics, Timone Hospital, Marseille, France
| | | | - Christophe Verny
- Nantes Angers le Mans University and Neurology Service, CNRS UMR6214, INSERM U1083, University Hospital Center, Angers, France
| | - Dan Milea
- Ophthalmology Service, Angers University Hospital Center, Angers, France and Singapore National Eye Centre, Singapore Eye Research Institute, Duke-National University of Singapore, Singapore
| | - Gaëtan Lesca
- Genetics Service, Lyon University Hospital Center, Lyon, France
| | - Michel Koenig
- Molecular Genetics Laboratory, INSERM U827, Montpellier Regional University Hospital Center, Montpellier, France
| | - Diana Rodriguez
- Rare Diseases Reference Center "Defects and Congenital Diseases of the Cerebellum," Armand Trousseau Hospital, Public Hospital Network of Paris, Paris, France.,Robert Debré Hospital, INSERM U1141, Paris, France.,Genetics Service, Armand Trousseau Hospital, Public Hospital Network of Paris, Paris, France
| | - Nada Houcinat
- Medical Genetics Service, Pellegrin University Hospital Center, Bordeaux, France
| | - Julien Van-Gils
- Medical Genetics Service, Pellegrin University Hospital Center, Bordeaux, France
| | - Christelle M Durand
- Rare Diseases Laboratory: Genetics and Metabolism, University of Bordeaux, Bordeaux, France
| | - Agnès Guichet
- Neuropediatrics Service, Armand Trousseau Hospital, Public Hospital Network of Paris, Sorbonne Universities-Pierre and Marie Curie University, Paris, France
| | - Magalie Barth
- Neuropediatrics Service, Armand Trousseau Hospital, Public Hospital Network of Paris, Sorbonne Universities-Pierre and Marie Curie University, Paris, France
| | - Dominique Bonneau
- Neuropediatrics Service, Armand Trousseau Hospital, Public Hospital Network of Paris, Sorbonne Universities-Pierre and Marie Curie University, Paris, France
| | - Philippe Convers
- Nantes Angers le Mans University and Department of Biochemistry and Genetics, University Hospital Center, Angers, France
| | - Elisabeth Maillart
- Clinical Neurophysiology Service, Saint-Étienne University Hospital Center, Saint-Étienne, France
| | - Lucie Guyant-Marechal
- Neurology Service, Pitié-Salpêtrière Hospital, Public Hospital Network of Paris, Paris, France
| | - Didier Hannequin
- Neurology Service, Pitié-Salpêtrière Hospital, Public Hospital Network of Paris, Paris, France
| | | | - Alexandra Afenjar
- Rare Diseases Reference Center "Defects and Congenital Diseases of the Cerebellum," Armand Trousseau Hospital, Public Hospital Network of Paris, Paris, France.,Neurologist, Caen, France
| | - Sandra Chantot-Bastaraud
- Rare Diseases Reference Center "Defects and Congenital Diseases of the Cerebellum," Armand Trousseau Hospital, Public Hospital Network of Paris, Paris, France.,Neurologist, Caen, France
| | - Stéphanie Valence
- Rare Diseases Reference Center "Defects and Congenital Diseases of the Cerebellum," Armand Trousseau Hospital, Public Hospital Network of Paris, Paris, France.,Genetics Service, Armand Trousseau Hospital, Public Hospital Network of Paris, Paris, France
| | - Perrine Charles
- Genetics Service, Pitié-Salpêtrière Hospital, Public Hospital Network of Paris, Paris, France
| | - Patrick Berquin
- Amiens University Hospital Center, Pediatric Neurology Activity Center, Amiens, France
| | - Caroline Rooryck
- Rare Diseases Laboratory: Genetics and Metabolism, University of Bordeaux, Bordeaux, France.,Medical Genetics Service, Pellegrin University Hospital Center, Bordeaux, France
| | - Julie Bouron
- Medical Genetics Service, Pellegrin University Hospital Center, Bordeaux, France
| | - Alexis Brice
- Genetics Service, Pitié-Salpêtrière Hospital, Public Hospital Network of Paris, Paris, France.,Brain and Spinal Cord Institute, INSERM U1127, CNRS UMR7225, Sorbonne Universities-Pierre and Marie Curie University, Paris, France
| | - Didier Lacombe
- Rare Diseases Laboratory: Genetics and Metabolism, University of Bordeaux, Bordeaux, France.,Medical Genetics Service, Pellegrin University Hospital Center, Bordeaux, France
| | - Rodrigue Rossignol
- Rare Diseases Laboratory: Genetics and Metabolism, University of Bordeaux, Bordeaux, France
| | - Giovanni Stevanin
- Genetics Service, Pitié-Salpêtrière Hospital, Public Hospital Network of Paris, Paris, France.,Brain and Spinal Cord Institute, INSERM U1127, CNRS UMR7225, Sorbonne Universities-Pierre and Marie Curie University, Paris, France.,Laboratory of Neurogenetics, Practical School of Higher Studies, Paris, France
| | - Giovanni Benard
- Rare Diseases Laboratory: Genetics and Metabolism, University of Bordeaux, Bordeaux, France
| | - Lydie Burglen
- Rare Diseases Reference Center "Defects and Congenital Diseases of the Cerebellum," Armand Trousseau Hospital, Public Hospital Network of Paris, Paris, France.,Robert Debré Hospital, INSERM U1141, Paris, France.,Neurologist, Caen, France
| | - Alexandra Durr
- Genetics Service, Pitié-Salpêtrière Hospital, Public Hospital Network of Paris, Paris, France.,Brain and Spinal Cord Institute, INSERM U1127, CNRS UMR7225, Sorbonne Universities-Pierre and Marie Curie University, Paris, France
| | - Cyril Goizet
- Rare Diseases Laboratory: Genetics and Metabolism, University of Bordeaux, Bordeaux, France.,Medical Genetics Service, Pellegrin University Hospital Center, Bordeaux, France
| | - Isabelle Coupry
- Rare Diseases Laboratory: Genetics and Metabolism, University of Bordeaux, Bordeaux, France
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Hamza W, Ali Pacha L, Hamadouche T, Muller J, Drouot N, Ferrat F, Makri S, Chaouch M, Tazir M, Koenig M, Benhassine T. Molecular and clinical study of a cohort of 110 Algerian patients with autosomal recessive ataxia. BMC MEDICAL GENETICS 2015; 16:36. [PMID: 26068213 PMCID: PMC4630839 DOI: 10.1186/s12881-015-0180-3] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2014] [Accepted: 05/29/2015] [Indexed: 12/12/2022]
Abstract
BACKGROUND Autosomal recessive cerebellar ataxias (ARCA) are a complex group of neurodegenerative disorders with great genetic and phenotypic heterogeneity, over 30 genes/loci have been associated with more than 20 different clinical forms of ARCA. Genetic heterogeneity combined with highly variable clinical expression of the cerebellar symptoms and overlapping features complicate furthermore the etiological diagnosis of ARCA. The determination of the most frequent mutations and corresponding ataxias, as well as particular features specific to a population, are mandatory to facilitate and speed up the diagnosis process, especially when an appropriate treatment is available. METHODS We explored 166 patients (115 families) refered to the neurology units of Algiers central hospitals (Algeria) with a cerebellar ataxia phenotype segregating as an autosomal recessive pattern of inheritance. Genomic DNA was extracted from peripheral blood samples and mutational screening was performed by PCR and direct sequencing or by targeted genomic capture and massive parallel sequencing of 57 genes associated with inherited cerebellar ataxia phenotypes. RESULTS In this work we report the clinical and molecular results obtained on a large cohort of Algerian patients (110 patients/76 families) with genetically determined autosomal recessive ataxia, representing 9 different types of ARCA and 23 different mutations, including 6 novel ones. The five most common ARCA in this cohort were Friedreich ataxia, ataxia with isolated vitamin E deficiency, ataxia with oculomotor apraxia type 2, autosomal recessive spastic ataxia of Charlevoix-Saguenay and ataxia with oculomotor apraxia type 1. CONCLUSION We report here a large cohort of patients with genetically determined autosomal recessive ataxia and the first study of the genetic context of ARCA in Algeria. This study showed that in Algerian patients, the two most common types of ataxia (Friedreich ataxia and ataxia with isolated vitamin E deficiency) coexist with forms that may be less common or underdiagnosed. To refine the genotype/phenotype correlation in rare and heteregeneous diseases as autosomal recessive ataxias, more extensive epidemiological investigations and reports are necessary as well as more accurate and detailed clinical characterizations. The use of standardized clinical and molecular protocols would thus enable a better knowledge of the different forms of ARCA.
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Affiliation(s)
- Wahiba Hamza
- Laboratoire de Biologie Cellulaire et Moléculaire, Faculté des Sciences Biologiques, USTHB, Alger, Algeria.
| | - Lamia Ali Pacha
- Service de Neurologie, CHU Mustapha Bacha, Alger, Algeria. .,Laboratoire de Neurosciences, Université d'Alger 1, Alger, Algeria.
| | - Tarik Hamadouche
- Laboratoire de Neurosciences, Université d'Alger 1, Alger, Algeria. .,Laboratoire de Biologie Moléculaire, Faculté des Sciences, UMBB, Boumerdes, Algeria.
| | - Jean Muller
- Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/Université de Strasbourg UMR7104, INSERM U964, Illkirch, France. .,Laboratoire de Diagnostic Génétique, Hôpitaux Universitaires de Strasbourg, Strasbourg, France.
| | - Nathalie Drouot
- Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/Université de Strasbourg UMR7104, INSERM U964, Illkirch, France.
| | - Farida Ferrat
- Service de Neurologie, CHU Ben Aknoun, Alger, Algeria.
| | - Samira Makri
- Service de Neurologie, EHS Ali Aït Idir, Alger, Algeria.
| | | | - Meriem Tazir
- Service de Neurologie, CHU Mustapha Bacha, Alger, Algeria. .,Laboratoire de Neurosciences, Université d'Alger 1, Alger, Algeria.
| | - Michel Koenig
- Laboratoire de Génétique de Maladies Rares, Institut Universitaire de Recherche Clinique, Université de Montpellier, CHU de Montpellier, Montpellier, France.
| | - Traki Benhassine
- Laboratoire de Biologie Cellulaire et Moléculaire, Faculté des Sciences Biologiques, USTHB, Alger, Algeria.
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