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Olbamo T, Tesfaye T, Jorga B. Entomological study on vectorial density, temporal variation of tsetse fly and other biting flies in intervention and non-intervention areas of South Omo Zone, Ethiopia. Vet Parasitol Reg Stud Reports 2024; 49:100996. [PMID: 38462301 DOI: 10.1016/j.vprsr.2024.100996] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Revised: 01/24/2024] [Accepted: 01/31/2024] [Indexed: 03/12/2024]
Abstract
A repeated cross-sectional entomological survey was conducted to estimate Glossina (tsetse) and other biting flies density, their seasonal variation and associated risk factors in intervention and non- intervention areas of South Omo Zone, Southwest Ethiopia from January 2019-November 2019. In both dry and wet seasons, a total of 96 NGU traps (64 traps in tsetse intervention districts and 32 traps in tsetse non- intervention districts) were deployed at an interval of about 100-200 m in purposively selected and suspected tsetse habitats. Thus, Glossina pallidipes was found to be the only cyclical vector along with mechanical vectors of Tabanus, Stomoxys and Haematopota. In tsetse intervention areas, G. pallidipes apparent density of 2.64 F/T/D and 0.42 F/T/D was recorded in dry and wet season respectively. Mechanical vectors (dry; wet) of Tabanus (205; 155), Stomoxys (34; 54) and Haematopota (50; 33) were also recorded in tsetse intervened areas. Whereas, in non- intervention areas, apparent density of G. pallidipes was 2.03 F/T/D and 0.56 F/T/D, respectively in dry and wet season. Similarly, Tabanus (22; 56), Stomoxys (10; 8) and Haematopota (5; 7) respectively in dry and wet (dry; wet) season were recorded in tsetse non- intervention areas. According to Negative Binomial Regression (NBR), season was the only variable significantly affecting (P < 0.05) the Glossina count in the current study area. Accordingly, the incidence G. pallidipes during wet season was decreased by the factor of 0.21 (CI; 0.097-0.47) when compared to its incidence in dry season by holding other variables constant. In conclusion, cyclical vectors were playing vital role in transmission of trypanosomosis in South Omo Zone along with numerous mechanical vectors even though there have been vector intervention activities in the areas. Therefore, strong, sustainable, environmentally friend and community participating vector control strategies should be followed to tackle the vector distribution in the area.
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Affiliation(s)
- Tekle Olbamo
- Jinka University, College of Agriculture and Natural Resources, Department of Animal Science, Jinka, Ethiopia
| | - Tegegn Tesfaye
- Southern Agricultural Research Institute, Jinka Agricultural Research Centre, Jinka, Ethiopia.
| | - Belete Jorga
- Jinka University, College of Agriculture and Natural Resources, Department of Animal Science, Jinka, Ethiopia
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Cannet A, Simon-Chane C, Akhoundi M, Histace A, Romain O, Souchaud M, Jacob P, Delaunay P, Sereno D, Bousses P, Grebaut P, Geiger A, de Beer C, Kaba D, Sereno D. Wing Interferential Patterns (WIPs) and machine learning, a step toward automatized tsetse (Glossina spp.) identification. Sci Rep 2022; 12:20086. [PMID: 36418429 PMCID: PMC9684539 DOI: 10.1038/s41598-022-24522-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2022] [Accepted: 11/16/2022] [Indexed: 11/24/2022] Open
Abstract
A simple method for accurately identifying Glossina spp in the field is a challenge to sustain the future elimination of Human African Trypanosomiasis (HAT) as a public health scourge, as well as for the sustainable management of African Animal Trypanosomiasis (AAT). Current methods for Glossina species identification heavily rely on a few well-trained experts. Methodologies that rely on molecular methodologies like DNA barcoding or mass spectrometry protein profiling (MALDI TOFF) haven't been thoroughly investigated for Glossina sp. Nevertheless, because they are destructive, costly, time-consuming, and expensive in infrastructure and materials, they might not be well adapted for the survey of arthropod vectors involved in the transmission of pathogens responsible for Neglected Tropical Diseases, like HAT. This study demonstrates a new type of methodology to classify Glossina species. In conjunction with a deep learning architecture, a database of Wing Interference Patterns (WIPs) representative of the Glossina species involved in the transmission of HAT and AAT was used. This database has 1766 pictures representing 23 Glossina species. This cost-effective methodology, which requires mounting wings on slides and using a commercially available microscope, demonstrates that WIPs are an excellent medium to automatically recognize Glossina species with very high accuracy.
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Affiliation(s)
- Arnaud Cannet
- Direction des affaires sanitaires et sociales de la Nouvelle-Calédonie, Nouméa, New Caledonia France
| | - Camille Simon-Chane
- grid.424458.b0000 0001 2287 8330ETIS UMR 8051, Cergy Paris University, ENSEA, CNRS, 95000 Cergy, France
| | - Mohammad Akhoundi
- grid.413780.90000 0000 8715 2621Parasitology-Mycology, Hôpital Avicenne, AP-HP, Bobigny, France
| | - Aymeric Histace
- grid.424458.b0000 0001 2287 8330ETIS UMR 8051, Cergy Paris University, ENSEA, CNRS, 95000 Cergy, France
| | - Olivier Romain
- grid.424458.b0000 0001 2287 8330ETIS UMR 8051, Cergy Paris University, ENSEA, CNRS, 95000 Cergy, France
| | - Marc Souchaud
- grid.424458.b0000 0001 2287 8330ETIS UMR 8051, Cergy Paris University, ENSEA, CNRS, 95000 Cergy, France
| | - Pierre Jacob
- grid.424458.b0000 0001 2287 8330ETIS UMR 8051, Cergy Paris University, ENSEA, CNRS, 95000 Cergy, France
| | - Pascal Delaunay
- grid.462370.40000 0004 0620 5402Inserm U1065, Centre Méditerranéen de Médecine Moléculaire (C3M), Université de Nice-Sophia Antipolis, Nice, France ,grid.413770.6Parasitologie-Mycologie, Hôpital de L’Archet, Centre Hospitalier Universitaire de Nice, (CHU), Nice, France ,grid.462603.50000 0004 0382 3424MIVEGEC, Univ Montpellier, CNRS, IRD, Montpellier, France
| | - Darian Sereno
- grid.121334.60000 0001 2097 0141InterTryp, Univ Montpellier, IRD-CIRAD, Parasitology Infectiology and Public Health Research Group, Montpellier, France
| | - Philippe Bousses
- grid.462603.50000 0004 0382 3424MIVEGEC, Univ Montpellier, CNRS, IRD, Montpellier, France
| | - Pascal Grebaut
- grid.121334.60000 0001 2097 0141InterTryp, Univ Montpellier, IRD-CIRAD, Parasitology Infectiology and Public Health Research Group, Montpellier, France
| | - Anne Geiger
- grid.121334.60000 0001 2097 0141InterTryp, Univ Montpellier, IRD-CIRAD, Parasitology Infectiology and Public Health Research Group, Montpellier, France
| | - Chantel de Beer
- grid.420221.70000 0004 0403 8399Insect Pest Control Laboratory, Joint FAO/IAEA Center of Nuclear Techniques in Food and Agriculture, Vienna, Austria ,grid.428711.90000 0001 2173 1003Epidemiology, Parasites & Vectors, Agricultural Research Council - Onderstepoort Veterinary Research (ARC-OVR), Onderstepoort, South Africa
| | - Dramane Kaba
- grid.452477.7Institut Pierre Richet, Institut National de Santé Publique, Abidjian, Côte d’Ivoire
| | - Denis Sereno
- grid.121334.60000 0001 2097 0141InterTryp, Univ Montpellier, IRD-CIRAD, Parasitology Infectiology and Public Health Research Group, Montpellier, France ,grid.462603.50000 0004 0382 3424MIVEGEC, Univ Montpellier, CNRS, IRD, Montpellier, France
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Benyahia H, Ouarti B, Diarra AZ, Boucheikhchoukh M, Meguini MN, Behidji M, Benakhla A, Parola P, Almeras L. Identification of Lice Stored in Alcohol Using MALDI-TOF MS. JOURNAL OF MEDICAL ENTOMOLOGY 2021; 58:1126-1133. [PMID: 33346344 DOI: 10.1093/jme/tjaa266] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/16/2020] [Indexed: 06/12/2023]
Abstract
Lice pose major public and veterinary health problems with economic consequences. Their identification is essential and requires the development of an innovative strategy. MALDI-TOF MS has recently been proposed as a quick, inexpensive, and accurate tool for the identification of arthropods. Alcohol is one of the most frequently used storage methods and makes it possible to store samples for long periods at room temperature. Several recent studies have reported that alcohol alters protein profiles resulting from MS analysis. After preliminary studies on frozen lice, the purpose of this research was to evaluate the influence of alcohol preservation on the accuracy of lice identification by MALDI-TOF MS. To this end, lice stored in alcohol for variable periods were submitted for MS analysis and sample preparation protocols were optimized. The reproducibility and specificity of the MS spectra obtained on both these arthropod families allowed us to implement the reference MS spectra database (DB) with protein profiles of seven lice species stored in alcohol. Blind tests revealed a correct identification of 93.9% of Pediculus humanus corporis (Linnaeus, 1758) and 98.4% of the other lice species collected in the field. This study demonstrated that MALDI-TOF MS could be successfully used for the identification of lice stored in alcohol for different lengths of time.
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Affiliation(s)
- Hanene Benyahia
- Aix Marseille Univ, IRD, SSA, AP-HM, VITROME, Marseille, France
- IHU-Méditerranée Infection, Marseille, France
| | - Basma Ouarti
- Aix Marseille Univ, IRD, SSA, AP-HM, VITROME, Marseille, France
- IHU-Méditerranée Infection, Marseille, France
| | - Adama Zan Diarra
- Aix Marseille Univ, IRD, SSA, AP-HM, VITROME, Marseille, France
- IHU-Méditerranée Infection, Marseille, France
| | - Mehdi Boucheikhchoukh
- Department of Veterinary Sciences, Chadli Bendjedid University, El-Tarf, 36000, Algeria
| | - Mohamed Nadir Meguini
- Institute of Veterinary and Agronomic Sciences, Mohamed Cherif Messaadia University, Souk-Ahras, Algeria
| | - Makhlouf Behidji
- Institute of Veterinary and Agronomic Sciences, Mohamed Cherif Messaadia University, Souk-Ahras, Algeria
| | - Ahmed Benakhla
- Department of Veterinary Sciences, Chadli Bendjedid University, El-Tarf, 36000, Algeria
| | - Philippe Parola
- Aix Marseille Univ, IRD, SSA, AP-HM, VITROME, Marseille, France
- IHU-Méditerranée Infection, Marseille, France
| | - Lionel Almeras
- Aix Marseille Univ, IRD, SSA, AP-HM, VITROME, Marseille, France
- IHU-Méditerranée Infection, Marseille, France
- Unité Parasitologie et Entomologie, Département Microbiologie et Maladies Infectieuses, Institut de Recherche Biomédicale des Armées, 19-21 Boulevard Jean Moulin, 13005 Marseille, France
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Testing the Applicability of MALDI-TOF MS as an Alternative Stock Identification Method in a Cryptic Species Complex. Molecules 2020; 25:molecules25143214. [PMID: 32674457 PMCID: PMC7397217 DOI: 10.3390/molecules25143214] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2020] [Revised: 07/01/2020] [Accepted: 07/12/2020] [Indexed: 11/16/2022] Open
Abstract
Knowledge of intraspecific variability of a certain species is essential for their long-term survival and for the development of conservation plans. Nowadays, molecular/genetic methods are the most frequently used for this purpose. Although, the Matrix Assisted Laser Desorption Ionization Time of Flight Mass Spectrometry (MALDI-TOF MS) technique has become a promising alternative tool to specify intraspecific variability, there is a lack of information about the limitations of this method, and some methodological issues need to be resolved. Towards this goal, we tested the sensitivity of this method on an intraspecific level, using genetically identified individuals of a cryptic fish species complex collected from five distinct populations. Additionally, some methodologic issues, such as the effect of (1) delayed sample preparation, (2) clove oil anaesthetization, and (3) different tissue types (muscle, and brain) were investigated using the MS analysis results. Our results show that the delayed sample preparation has a fundamental effect on the result of MS analysis, while at the same time the clove oil did not affect the results considerably. Both the brain and muscle samples were usable for cryptic species identification, but in our opinion this method has limited applicability for population-level segregation. The application of MALDI-TOF MS to the exploitable toolkit of phylogenetic and taxonomic researches could be used to broaden conclusions.
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Tang J, Mou M, Wang Y, Luo Y, Zhu F. MetaFS: Performance assessment of biomarker discovery in metaproteomics. Brief Bioinform 2020; 22:5854399. [PMID: 32510556 DOI: 10.1093/bib/bbaa105] [Citation(s) in RCA: 63] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 04/17/2020] [Accepted: 05/05/2020] [Indexed: 12/19/2022] Open
Abstract
Metaproteomics suffers from the issues of dimensionality and sparsity. Data reduction methods can maximally identify the relevant subset of significant differential features and reduce data redundancy. Feature selection (FS) methods were applied to obtain the significant differential subset. So far, a variety of feature selection methods have been developed for metaproteomic study. However, due to FS's performance depended heavily on the data characteristics of a given research, the well-suitable feature selection method must be carefully selected to obtain the reproducible differential proteins. Moreover, it is critical to evaluate the performance of each FS method according to comprehensive criteria, because the single criterion is not sufficient to reflect the overall performance of the FS method. Therefore, we developed an online tool named MetaFS, which provided 13 types of FS methods and conducted the comprehensive evaluation on the complex FS methods using four widely accepted and independent criteria. Furthermore, the function and reliability of MetaFS were systematically tested and validated via two case studies. In sum, MetaFS could be a distinguished tool for discovering the overall well-performed FS method for selecting the potential biomarkers in microbiome studies. The online tool is freely available at https://idrblab.org/metafs/.
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Ouarti B, Laroche M, Righi S, Meguini MN, Benakhla A, Raoult D, Parola P. Development of MALDI-TOF mass spectrometry for the identification of lice isolated from farm animals. ACTA ACUST UNITED AC 2020; 27:28. [PMID: 32351208 PMCID: PMC7191974 DOI: 10.1051/parasite/2020026] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Accepted: 04/11/2020] [Indexed: 12/18/2022]
Abstract
Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) is now routinely used for the rapid identification of microorganisms isolated from clinical samples and has been recently successfully applied to the identification of arthropods. In the present study, this proteomics tool was used to identify lice collected from livestock and poultry in Algeria. The MALDI-TOF MS spectra of 408 adult specimens were measured for 14 species, including Bovicola bovis, B. ovis, B. caprae, Haematopinus eurysternus, Linognathus africanus, L. vituli, Solenopotes capillatus, Menacanthus stramineus, Menopon gallinae, Chelopistes meleagridis, Goniocotes gallinae, Goniodes gigas, Lipeurus caponis and laboratory reared Pediculus humanus corporis. Good quality spectra were obtained for 305 samples. Spectral analysis revealed intra-species reproducibility and inter-species specificity that were consistent with the morphological classification. A blind test of 248 specimens was performed against the in-lab database upgraded with new spectra and validated using molecular tools. With identification percentages ranging from 76% to 100% alongside high identification scores (mean = 2.115), this study proposes MALDI-TOF MS as an effective tool for discriminating lice species.
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Affiliation(s)
- Basma Ouarti
- Aix Marseille Univ., IRD, AP-HM, SSA, VITROME, 13005 Marseille, France - IHU-Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005 Marseille, France
| | - Maureen Laroche
- Aix Marseille Univ., IRD, AP-HM, SSA, VITROME, 13005 Marseille, France - IHU-Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005 Marseille, France
| | - Souad Righi
- Université Chadli Bendjdid, Département des sciences Vétérinaire, 36000 El Tarf, Algeria
| | - Mohamed Nadir Meguini
- Université Chadli Bendjdid, Département des sciences Vétérinaire, 36000 El Tarf, Algeria - Institut des Sciences Vétérinaire et Agronomiques, Université Mohamed Cherif Messaadia, 41000 Souk-Ahras, Algeria
| | - Ahmed Benakhla
- Université Chadli Bendjdid, Département des sciences Vétérinaire, 36000 El Tarf, Algeria
| | - Didier Raoult
- IHU-Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005 Marseille, France - Aix Marseille Univ., IRD, AP-HM, MEPHI, 13005 Marseille, France
| | - Philippe Parola
- Aix Marseille Univ., IRD, AP-HM, SSA, VITROME, 13005 Marseille, France - IHU-Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005 Marseille, France
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Zurita A, Djeghar R, Callejón R, Cutillas C, Parola P, Laroche M. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry as a useful tool for the rapid identification of wild flea vectors preserved in alcohol. MEDICAL AND VETERINARY ENTOMOLOGY 2019; 33:185-194. [PMID: 30516832 DOI: 10.1111/mve.12351] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2018] [Revised: 09/18/2018] [Accepted: 10/07/2018] [Indexed: 06/09/2023]
Abstract
Flea identification is a significant issue because some species are considered as important vectors of several human pathogens that have emerged or re-emerged recently, such as Bartonella henselae (Rhizobiales: Bartonellaceae) and Rickettsia felis (Rickettsiales: Rickettsiaceae). Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) has been evaluated in recent years for the identification of multicellular organisms, including arthropods. A preliminary study corroborated the usefulness of this technique for the rapid identification of fleas, creating a preliminary database containing the spectra of five species of flea. However, longterm flea preservation in ethanol did not appear to be an adequate method of storage in the context of specimen identification by MALDI-TOF MS profiling. The goal of the present work was to assess the performance of MALDI-TOF MS in the identification of seven flea species [Ctenocephalides felis (Siphonaptera: Pulicidae), Ctenocephalides canis, Pulex irritans (Siphonaptera: Pulicidae), Archaeopsylla erinacei (Siphonaptera: Pulicidae), Leptopsylla taschenbergi (Siphonaptera: Ceratophyllidae), Stenoponia tripectinata (Siphonaptera: Stenoponiidae) and Nosopsyllus fasciatus (Siphonaptera: Ceratophyllidae)] collected in the field and stored in ethanol for different periods of time. The results confirmed that MALDI-TOF MS can be used for the identification of wild fleas stored in ethanol. Furthermore, this technique was able to discriminate not only different flea genera, but also the two congeneric species C. felis and C. canis.
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Affiliation(s)
- A Zurita
- Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Seville, Seville, Spain
| | - R Djeghar
- Laboratoire d'Amélioration et Développement de la Production Végétale et Animale (LADPVA), Faculté des Sciences de la Nature et de la Vie, Ferhat Abbas University, Sétif, Algeria
| | - R Callejón
- Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Seville, Seville, Spain
| | - C Cutillas
- Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Seville, Seville, Spain
| | - P Parola
- Institut de Recherche pour le Développement (IRD), Assistance Publique-Hôpitaux de Marseille (AP-HM), Service de Santé des Armées (SSA), Vecteurs-Infections Tropicales et Méditerranéennes (VITROME), Institut Hospitalo-Universitaire (IHU) Méditerranée Infection, Aix Marseille University, Marseille, France
| | - M Laroche
- Institut de Recherche pour le Développement (IRD), Assistance Publique-Hôpitaux de Marseille (AP-HM), Service de Santé des Armées (SSA), Vecteurs-Infections Tropicales et Méditerranéennes (VITROME), Institut Hospitalo-Universitaire (IHU) Méditerranée Infection, Aix Marseille University, Marseille, France
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Niare S, Tandina F, Davoust B, Doumbo O, Raoult D, Parola P, Almeras L. Accurate identification of Anopheles gambiae Giles trophic preferences by MALDI-TOF MS. INFECTION GENETICS AND EVOLUTION 2018; 63:410-419. [DOI: 10.1016/j.meegid.2017.09.009] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2017] [Revised: 09/07/2017] [Accepted: 09/09/2017] [Indexed: 01/25/2023]
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Halada P, Hlavackova K, Dvorak V, Volf P. Identification of immature stages of phlebotomine sand flies using MALDI-TOF MS and mapping of mass spectra during sand fly life cycle. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY 2018; 93:47-56. [PMID: 29248738 DOI: 10.1016/j.ibmb.2017.12.005] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2017] [Revised: 12/05/2017] [Accepted: 12/11/2017] [Indexed: 06/07/2023]
Abstract
The aim of the study was to evaluate the potential of matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF MS) for the species identification of sand flies at different developmental stages and map changes in their protein profiles during the course of whole life cycle. Specimens of six different species from laboratory colonies at larval and pupal stages were examined using MALDI-TOF MS. The protein profiles of larvae were stable from the L2 to L4 developmental stages and clearly distinguishable at the species level. In a validation study, 123 larvae of the six species were queried against reference database resulting in 93% correct species identification (log score values higher than 2.0). The spectra generated from sand fly pupae allow species identification as well and surprisingly, in contrast to biting midges and mosquitoes, they did not change during this developmental stage. For adults, thorax was revealed as the optimal body part for sample preparation yielding reproducible spectra regardless age and diet. Only variations were uncovered for freshly engorged females profiles of which were affected by blood signals first two days post bloodmeal. The findings demonstrate that in addition to adult species differentiation MALDI-TOF MS may also serve as a rapid and effective tool for species identification of juvenile stages of phlebotomine sand flies.
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Affiliation(s)
- Petr Halada
- Institute of Microbiology of the Czech Academy of Sciences, Videnska 1083, Prague 4, 142 20, Czech Republic
| | - Kristyna Hlavackova
- Department of Parasitology, Faculty of Science, Charles University, Vinicna 7, Prague 2, 128 43, Czech Republic.
| | - Vit Dvorak
- Department of Parasitology, Faculty of Science, Charles University, Vinicna 7, Prague 2, 128 43, Czech Republic
| | - Petr Volf
- Department of Parasitology, Faculty of Science, Charles University, Vinicna 7, Prague 2, 128 43, Czech Republic
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MALDI-TOF MS protein profiling for the rapid identification of Chagas disease triatomine vectors and application to the triatomine fauna of French Guiana. Parasitology 2017; 145:665-675. [PMID: 28768559 DOI: 10.1017/s0031182017001342] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Triatomines are haematophagous insects involved in the transmission of Trypanosoma cruzi, the aetiological agent of Chagas disease. The vector competence of these arthropods can be highly variable, depending on the species. A precise identification is therefore crucial for the epidemiological surveillance of T. cruzi and the determination of at-risk human populations. To circumvent the difficulties of morphological identification and the lack of comprehensiveness of the GenBank database, we hereby propose an alternative method for triatomine identification. The femurs of the median legs of triatomines from eight different species from French Guiana were subjected to matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) analysis. Method evaluation was performed on fresh specimens and was applied to dry specimens collected between 1991 and 2003. Femur-derived protein extracts provided reproducible spectra within the same species along with significant interspecies heterogeneity. Validation of the study by blind test analysis provided 100% correct identification of the specimens in terms of the species, sex and developmental stage. MALDI-TOF mass spectrometry appears to be a powerful tool for triatomine identification, which is a major step forward in the fight against Chagas disease.
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Diarra AZ, Almeras L, Laroche M, Berenger JM, Koné AK, Bocoum Z, Dabo A, Doumbo O, Raoult D, Parola P. Molecular and MALDI-TOF identification of ticks and tick-associated bacteria in Mali. PLoS Negl Trop Dis 2017; 11:e0005762. [PMID: 28742123 PMCID: PMC5542699 DOI: 10.1371/journal.pntd.0005762] [Citation(s) in RCA: 82] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Revised: 08/03/2017] [Accepted: 06/30/2017] [Indexed: 12/14/2022] Open
Abstract
Ticks are considered the second vector of human and animal diseases after mosquitoes. Therefore, identification of ticks and associated pathogens is an important step in the management of these vectors. In recent years, Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) has been reported as a promising method for the identification of arthropods including ticks. The objective of this study was to improve the conditions for the preparation of tick samples for their identification by MALDI-TOF MS from field-collected ethanol-stored Malian samples and to evaluate the capacity of this technology to distinguish infected and uninfected ticks. A total of 1,333 ticks were collected from mammals in three distinct sites from Mali. Morphological identification allowed classification of ticks into 6 species including Amblyomma variegatum, Hyalomma truncatum, Hyalomma marginatum rufipes, Rhipicephalus (Boophilus) microplus, Rhipicephalus evertsi evertsi and Rhipicephalus sanguineus sl. Among those, 471 ticks were randomly selected for molecular and proteomic analyses. Tick legs submitted to MALDI-TOF MS revealed a concordant morpho/molecular identification of 99.6%. The inclusion in our MALDI-TOF MS arthropod database of MS reference spectra from ethanol-preserved tick leg specimens was required to obtain reliable identification. When tested by molecular tools, 76.6%, 37.6%, 20.8% and 1.1% of the specimens tested were positive for Rickettsia spp., Coxiella burnetii, Anaplasmataceae and Borrelia spp., respectively. These results support the fact that MALDI-TOF is a reliable tool for the identification of ticks conserved in alcohol and enhances knowledge about the diversity of tick species and pathogens transmitted by ticks circulating in Mali.
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Affiliation(s)
- Adama Zan Diarra
- Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095, AP-HM, IHU - Méditerranée Infection, Marseille, France
- Malaria Research and Training Center, Département d’Epidémiologie des Affections Parasitaires, Faculté de Médecine et d’Odontostomatologie, Faculté de Pharmacie, USTTB, Bamako, Mali
| | - Lionel Almeras
- Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095, AP-HM, IHU - Méditerranée Infection, Marseille, France
- Unité de Parasitologie et Entomologie, Département des Maladies Infectieuses, Institut de Recherche Biomédicale des Armées, Marseille, France
| | - Maureen Laroche
- Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095, AP-HM, IHU - Méditerranée Infection, Marseille, France
| | - Jean-Michel Berenger
- Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095, AP-HM, IHU - Méditerranée Infection, Marseille, France
| | - Abdoulaye K. Koné
- Malaria Research and Training Center, Département d’Epidémiologie des Affections Parasitaires, Faculté de Médecine et d’Odontostomatologie, Faculté de Pharmacie, USTTB, Bamako, Mali
| | | | - Abdoulaye Dabo
- Malaria Research and Training Center, Département d’Epidémiologie des Affections Parasitaires, Faculté de Médecine et d’Odontostomatologie, Faculté de Pharmacie, USTTB, Bamako, Mali
| | - Ogobara Doumbo
- Malaria Research and Training Center, Département d’Epidémiologie des Affections Parasitaires, Faculté de Médecine et d’Odontostomatologie, Faculté de Pharmacie, USTTB, Bamako, Mali
| | - Didier Raoult
- Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095, AP-HM, IHU - Méditerranée Infection, Marseille, France
| | - Philippe Parola
- Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095, AP-HM, IHU - Méditerranée Infection, Marseille, France
- * E-mail:
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Murugaiyan J, Roesler U. MALDI-TOF MS Profiling-Advances in Species Identification of Pests, Parasites, and Vectors. Front Cell Infect Microbiol 2017; 7:184. [PMID: 28555175 PMCID: PMC5430024 DOI: 10.3389/fcimb.2017.00184] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2017] [Accepted: 04/27/2017] [Indexed: 12/20/2022] Open
Abstract
Invertebrate pests and parasites of humans, animals, and plants continue to cause serious diseases and remain as a high treat to agricultural productivity and storage. The rapid and accurate species identification of the pests and parasites are needed for understanding epidemiology, monitoring outbreaks, and designing control measures. Matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS) profiling has emerged as a rapid, cost effective, and high throughput technique of microbial species identification in modern diagnostic laboratories. The development of soft ionization techniques and the release of commercial pattern matching software platforms has resulted in the exponential growth of applications in higher organisms including parasitology. The present review discusses the proof-of-principle experiments and various methods of MALDI MS profiling in rapid species identification of both laboratory and field isolates of pests, parasites and vectors.
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Affiliation(s)
- Jayaseelan Murugaiyan
- Institute of Animal Hygiene and Environmental Health, Centre for Infectious Medicine, Freie Universität BerlinBerlin, Germany
| | - Uwe Roesler
- Institute of Animal Hygiene and Environmental Health, Centre for Infectious Medicine, Freie Universität BerlinBerlin, Germany
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Yssouf A, Almeras L, Raoult D, Parola P. Emerging tools for identification of arthropod vectors. Future Microbiol 2016; 11:549-66. [PMID: 27070074 DOI: 10.2217/fmb.16.5] [Citation(s) in RCA: 108] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The rapid and reliable identification of arthropod vector species is an essential component of the fight against vector-borne diseases. However, owing to the lack of entomological expertise required for the morphological identification method, development of alternative and complementary tools is needed. This review describes the main methods used for arthropod identification, focusing on the emergence of protein profiling using MALDI-TOF MS technology. Sample preparation, analysis of reproducibility, database creation and blind tests for controlling accuracy of this tool for arthropod identification are described. The advantages and limitations of the MALDI-TOF MS method are illustrated by emphasizing different hematophagous arthropods, including mosquitoes and ticks, the top two main vectors of infectious diseases.
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Affiliation(s)
- Amina Yssouf
- Aix Marseille Université, Unité de Recherche en Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63, CNRS 7278, IRD 198 (Dakar, Sénégal), Inserm 1095, Faculté de Médecine, 27 bd Jean Moulin, 13385 Marseille cedex 5, France
| | - Lionel Almeras
- Aix Marseille Université, Unité de Recherche en Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63, CNRS 7278, IRD 198 (Dakar, Sénégal), Inserm 1095, Faculté de Médecine, 27 bd Jean Moulin, 13385 Marseille cedex 5, France
| | - Didier Raoult
- Aix Marseille Université, Unité de Recherche en Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63, CNRS 7278, IRD 198 (Dakar, Sénégal), Inserm 1095, Faculté de Médecine, 27 bd Jean Moulin, 13385 Marseille cedex 5, France
| | - Philippe Parola
- Aix Marseille Université, Unité de Recherche en Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63, CNRS 7278, IRD 198 (Dakar, Sénégal), Inserm 1095, Faculté de Médecine, 27 bd Jean Moulin, 13385 Marseille cedex 5, France
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Rayaisse JB, Salou E, Kiema S, Akoudjin M, Kaba D, Kagbadouno M, Djohan V, Camara M, Dayo GK, Courtin F, Solano P, Bouyer J. Tsetse diversity and abundance in Southern Burkina Faso in relation with the vegetation. Parasitol Res 2015; 114:3357-63. [PMID: 26040845 DOI: 10.1007/s00436-015-4560-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2015] [Accepted: 05/27/2015] [Indexed: 11/25/2022]
Abstract
The increase of human population, combined with climatic changes, contributed to the modification of spatial distribution of tsetse flies, main vector of trypanosomiasis. In order to establish and compare tsetse presence and their relationship with vegetation, entomological survey was performed using biconical traps deployed in transects, simultaneously with phyto-sociological study, on the Comoe river at its source in the village of Moussodougou, and in the semi-protected area of Folonzo, both localities in Southern Burkina Faso. In Folonzo, the survey revealed a diversity of tsetse with 4 species occurring with apparent densities as follows: Glossina tachinoides (8.9 tsetse/trap/day); G. morsitans submorsitans (1.8 tsetse/trap/day); G. palpalis gambiensis (0.6/trap/day) and G. medicorum (0.15 tsetse/trap/day). In Moussodougou, a highly anthropized area, mainly G. p. gambiensis was caught (2.06 tsetse/trap/day), and rarely G. tachinoides. The phyto-sociological study allowed discrimination of 6 types of vegetation in both localities, with 3 concordances that are riparian forest, shrubby and woody savannah. In Moussodougou, all tsetse were caught in the riparian forest. That was also the case in Folonzo where a great proportion (95 to 99 % following the season) of G. p. gambiensis and G. tachinoides were caught in the gallery, while G. m. submorsitans was occurring as well in the gallery as in the savannah, and G. medicorum in the forest gallery. This study showed that although G. tachinoides and G.p. gambiensis are both riparian, they do not have the same preference in terms of biotope.
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Affiliation(s)
- J-B Rayaisse
- CIRDES, 01 BP 454, Bobo Dioulasso 01, Burkia Faso,
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Identification of phlebotomine sand flies using one MALDI-TOF MS reference database and two mass spectrometer systems. Parasit Vectors 2015; 8:266. [PMID: 25957576 PMCID: PMC4432514 DOI: 10.1186/s13071-015-0878-2] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2015] [Accepted: 04/29/2015] [Indexed: 11/15/2022] Open
Abstract
Background Rapid, accurate and high-throughput identification of vector arthropods is of paramount importance in surveillance programmes that are becoming more common due to the changing geographic occurrence and extent of many arthropod-borne diseases. Protein profiling by MALDI-TOF mass spectrometry fulfils these requirements for identification, and reference databases have recently been established for several vector taxa, mostly with specimens from laboratory colonies. Methods We established and validated a reference database containing 20 phlebotomine sand fly (Diptera: Psychodidae, Phlebotominae) species by using specimens from colonies or field-collections that had been stored for various periods of time. Results Identical biomarker mass patterns (‘superspectra’) were obtained with colony- or field-derived specimens of the same species. In the validation study, high quality spectra (i.e. more than 30 evaluable masses) were obtained with all fresh insects from colonies, and with 55/59 insects deep-frozen (liquid nitrogen/-80 °C) for up to 25 years. In contrast, only 36/52 specimens stored in ethanol could be identified. This resulted in an overall sensitivity of 87 % (140/161); specificity was 100 %. Duration of storage impaired data counts in the high mass range, and thus cluster analyses of closely related specimens might reflect their storage conditions rather than phenotypic distinctness. A major drawback of MALDI-TOF MS is the restricted availability of in-house databases and the fact that mass spectrometers from 2 companies (Bruker, Shimadzu) are widely being used. We have analysed fingerprints of phlebotomine sand flies obtained by automatic routine procedure on a Bruker instrument by using our database and the software established on a Shimadzu system. The sensitivity with 312 specimens from 8 sand fly species from laboratory colonies when evaluating only high quality spectra was 98.3 %; the specificity was 100 %. The corresponding diagnostic values with 55 field-collected specimens from 4 species were 94.7 % and 97.4 %, respectively. Conclusions A centralized high-quality database (created by expert taxonomists and experienced users of mass spectrometers) that is easily amenable to customer-oriented identification services is a highly desirable resource. As shown in the present work, spectra obtained from different specimens with different instruments can be analysed using a centralized database, which should be available in the near future via an online platform in a cost-efficient manner.
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Dieme C, Yssouf A, Vega-Rúa A, Berenger JM, Failloux AB, Raoult D, Parola P, Almeras L. Accurate identification of Culicidae at aquatic developmental stages by MALDI-TOF MS profiling. Parasit Vectors 2014; 7:544. [PMID: 25442218 PMCID: PMC4273427 DOI: 10.1186/s13071-014-0544-0] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2014] [Accepted: 11/17/2014] [Indexed: 12/02/2022] Open
Abstract
Background The identification of mosquito vectors is generally based on morphological criteria, but for aquatic stages, morphological characteristics may be missing, leading to incomplete or incorrect identification. The high cost of molecular biology techniques requires the development of an alternative strategy. In the last decade, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) profiling has proved to be efficient for arthropod identification at the species level. Methods To investigate the usefulness of MALDI-TOF MS for the identification of mosquitoes at aquatic stages, optimizations of sample preparation, diet, body parts and storage conditions were tested. Protein extracts of whole specimens from second larval stage to pupae were selected for the creation of a reference spectra database. The database included a total of 95 laboratory-reared specimens of 6 mosquito species, including Anopheles gambiae (S form), Anopheles coluzzi (M form), Culex pipiens pipiens, Culex pipiens molestus, Aedes aegypti and 2 colonies of Aedes albopictus. Results The present study revealed that whole specimens at aquatic stages produced reproducible and singular spectra according to the mosquito species. Moreover, MS protein profiles appeared weakly affected by the diet provided. Despite the low diversity of some MS profiles, notably for cryptic species, clustering analyses correctly classified all specimens tested at the species level followed by the clustering of early vs. late aquatic developmental stages. Discriminant mass peaks were recorded for the 6 mosquito species analyzed at larval stage 3 and the pupal stage. Querying against the reference spectra database of 149 new specimens at different aquatic stages from the 6 mosquito species revealed that 147 specimens were correctly identified at the species level and that early and late developmental stages were also distinguished. Conclusions The present work highlights that MALDI-TOF MS profiling may be useful for the rapid and reliable identification of mosquito species at aquatic stages. With this proteomic tool, it becomes now conceivable to survey mosquito breeding sites prior to the mosquitoes’ emergence and to adapt anti-vectorial measures according to the mosquito fauna detected. Electronic supplementary material The online version of this article (doi:10.1186/s13071-014-0544-0) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Constentin Dieme
- Aix Marseille Université, Unité de Recherche en Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63, CNRS 7278, IRD 198 (Dakar, Sénégal), Inserm 1095, WHO collaborative center for rickettsioses and other arthropod borne bacterial diseases, Faculté de Médecine, 27 bd Jean Moulin, 13385, Marseille cedex 5, France. .,Laboratoire d'Ecologie Vectorielle et Parasitaire, Université Cheikh Anta Diop de Dakar, Dakar, Senegal.
| | - Amina Yssouf
- Aix Marseille Université, Unité de Recherche en Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63, CNRS 7278, IRD 198 (Dakar, Sénégal), Inserm 1095, WHO collaborative center for rickettsioses and other arthropod borne bacterial diseases, Faculté de Médecine, 27 bd Jean Moulin, 13385, Marseille cedex 5, France.
| | - Anubis Vega-Rúa
- Department of Virology, Institut Pasteur, Arboviruses and Insect Vectors, Paris, France.
| | - Jean-Michel Berenger
- Aix Marseille Université, Unité de Recherche en Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63, CNRS 7278, IRD 198 (Dakar, Sénégal), Inserm 1095, WHO collaborative center for rickettsioses and other arthropod borne bacterial diseases, Faculté de Médecine, 27 bd Jean Moulin, 13385, Marseille cedex 5, France.
| | - Anna-Bella Failloux
- Department of Virology, Institut Pasteur, Arboviruses and Insect Vectors, Paris, France.
| | - Didier Raoult
- Aix Marseille Université, Unité de Recherche en Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63, CNRS 7278, IRD 198 (Dakar, Sénégal), Inserm 1095, WHO collaborative center for rickettsioses and other arthropod borne bacterial diseases, Faculté de Médecine, 27 bd Jean Moulin, 13385, Marseille cedex 5, France.
| | - Philippe Parola
- Aix Marseille Université, Unité de Recherche en Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63, CNRS 7278, IRD 198 (Dakar, Sénégal), Inserm 1095, WHO collaborative center for rickettsioses and other arthropod borne bacterial diseases, Faculté de Médecine, 27 bd Jean Moulin, 13385, Marseille cedex 5, France.
| | - Lionel Almeras
- Aix Marseille Université, Unité de Recherche en Maladies Infectieuses et Tropicales Emergentes (URMITE), UM63, CNRS 7278, IRD 198 (Dakar, Sénégal), Inserm 1095, WHO collaborative center for rickettsioses and other arthropod borne bacterial diseases, Faculté de Médecine, 27 bd Jean Moulin, 13385, Marseille cedex 5, France.
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