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Gutierrez E, Mitchell S, Hambly C, Sayle KL, von Kriegsheim A, Speakman JR, Britton K. Carbon, nitrogen, and sulfur elemental and isotopic variations in mouse hair and bone collagen during short-term graded calorie restriction. iScience 2024; 27:110059. [PMID: 38947513 PMCID: PMC11214416 DOI: 10.1016/j.isci.2024.110059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Revised: 03/19/2024] [Accepted: 05/17/2024] [Indexed: 07/02/2024] Open
Abstract
This study characterized the effect of calorie restriction (CR) on elemental content and stable isotope ratio measurements of bone "collagen" and hair keratin. Adult mice on graded CR (10-40%; 84 days) showed decreased hair δ 15N, δ 13C, and δ 34S values (significantly for δ 15N) with increasing CR, alongside a significant increase in bone "collagen" δ 15N values and a decrease in "collagen" δ 13C values. We propose this was likely due to the intensified mobilization of endogenous proteins, as well as lipids in newly synthesized "collagen". Elemental analysis of bone "collagen" revealed decreased carbon, nitrogen, and sulfur % content with increasing CR which is attributed to a change in the in vivo bone "collagen" structure with extent of CR. This complexity challenges the use of elemental indicators in the assessment of collagen quality in archaeological studies where nutritional stress may be a factor.
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Affiliation(s)
- Eléa Gutierrez
- Department of Archaeology, University of Aberdeen, Aberdeen, Scotland AB39 2PN, UK
- School of Biological Sciences, University of Aberdeen, Aberdeen, Scotland AB24 2TZ, UK
- AASPE “Archéozoologie, Archéobotanique: Sociétés, Pratiques, Environnements”, Muséum national d’Histoire naturelle, 75005 Paris, France
| | - Sharon Mitchell
- School of Biological Sciences, University of Aberdeen, Aberdeen, Scotland AB24 2TZ, UK
| | - Catherine Hambly
- School of Biological Sciences, University of Aberdeen, Aberdeen, Scotland AB24 2TZ, UK
| | - Kerry L. Sayle
- Scottish Universities Environmental Research Centre, University of Glasgow, Scotland G75 0QF, UK
| | - Alex von Kriegsheim
- Edinburgh Cancer Research UK Centre, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh Scotland EH4 2XR, UK
| | - John R. Speakman
- School of Biological Sciences, University of Aberdeen, Aberdeen, Scotland AB24 2TZ, UK
- Shenzhen Key Laboratory of Metabolic Health, Centre for Energy Metabolism and Reproduction, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, PRC
- Centre of Excellence in Animal Evolution and Genetics, Kunming, PRC
- State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, PRC
| | - Kate Britton
- Department of Archaeology, University of Aberdeen, Aberdeen, Scotland AB39 2PN, UK
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Gurney KEB, Classen HL, Clark RG. Testing for effects of growth rate on isotope trophic discrimination factors and evaluating the performance of Bayesian stable isotope mixing models experimentally: A moment of truth? PLoS One 2024; 19:e0304495. [PMID: 38875228 PMCID: PMC11178173 DOI: 10.1371/journal.pone.0304495] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Accepted: 05/13/2024] [Indexed: 06/16/2024] Open
Abstract
Discerning assimilated diets of wild animals using stable isotopes is well established where potential dietary items in food webs are isotopically distinct. With the advent of mixing models, and Bayesian extensions of such models (Bayesian Stable Isotope Mixing Models, BSIMMs), statistical techniques available for these efforts have been rapidly increasing. The accuracy with which BSIMMs quantify diet, however, depends on several factors including uncertainty in tissue discrimination factors (TDFs; Δ) and identification of appropriate error structures. Whereas performance of BSIMMs has mostly been evaluated with simulations, here we test the efficacy of BSIMMs by raising domestic broiler chicks (Gallus gallus domesticus) on four isotopically distinct diets under controlled environmental conditions, ideal for evaluating factors that affect TDFs and testing how BSIMMs allocate individual birds to diets that vary in isotopic similarity. For both liver and feather tissues, δ13C and δ 15N values differed among dietary groups. Δ13C of liver, but not feather, was negatively related to the rate at which individuals gained body mass. For Δ15N, we identified effects of dietary group, sex, and tissue type, as well as an interaction between sex and tissue type, with females having higher liver Δ15N relative to males. For both tissues, BSIMMs allocated most chicks to correct dietary groups, especially for models using combined TDFs rather than diet-specific TDFs, and those applying a multiplicative error structure. These findings provide new information on how biological processes affect TDFs and confirm that adequately accounting for variability in consumer isotopes is necessary to optimize performance of BSIMMs. Moreover, results demonstrate experimentally that these models reliably characterize consumed diets when appropriately parameterized.
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Affiliation(s)
- Kirsty E B Gurney
- Science and Technology Branch, Environment and Climate Change Canada, Saskatoon, Saskatchewan, Canada
| | - Henry L Classen
- College of Agriculture and Bioresources, University of Saskatchewan, Saskatoon, Saskatchewan, Canada
| | - Robert G Clark
- Science and Technology Branch, Environment and Climate Change Canada, Saskatoon, Saskatchewan, Canada
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Sánchez-Cañadillas E, Beaumont J, Santana-Cabrera J, Gorton M, Arnay-de-la-Rosa M. The early lives of the islanders: Stable isotope analysis of incremental dentine collagen from the prehispanic period of the Canary Islands. AMERICAN JOURNAL OF BIOLOGICAL ANTHROPOLOGY 2023; 182:300-317. [PMID: 37530169 DOI: 10.1002/ajpa.24828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 07/11/2023] [Accepted: 07/18/2023] [Indexed: 08/03/2023]
Abstract
OBJECTIVES This study presents isotopic information for incremental dentine collagen and bone bulk collagen from individuals from the Canary Islands (Tenerife and Gran Canaria) to explore dietary differences during childhood life. MATERIALS AND METHODS Eight individuals have been studied, which comprises 122 δ15 N and δ13 C incremental dentine measurements and eight bulk bone collagen analyses. A baseline of potentially consumed food sources has been developed for comparative purposes. A food reconstruction using isotopic transferred signals (FRUITS) model of probable contributions of each food source towards the diet of each individual has been developed. All samples but one belongs to the later period of indigenous occupation of the archipelago. RESULTS The dentine collagen data are presented in correlated δ13 C and δ15 N plots per individual, showing the isotopic changes throughout time. δ15 N values for each individual tend to be variable whereas δ13 C data are generally more stable with a range of +9.1 to +14‰ for δ15 N and -17.4 to -20.8‰ for δ13 C. CONCLUSION The isotopic analysis allows for the reconstruction of eight dietary profiles, which allow us to estimate the different dietary protein sources. The FRUITS model shows different percentages of the primary food sources for each individual. Where both δ13 C and δ15 N are elevated, this could be indicative of a higher marine contribution to the diet. There appear to be two main dietary profiles identifiable in the dataset and these may be related to changes in status or place of residence. Short-term variations in δ13 C and δ15 N and opposing co-variance of isotopic values can be indicative of nutritional stress, although metabolic changes during growth are also considered.
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Affiliation(s)
- Elías Sánchez-Cañadillas
- Departamento de Geografía e Historia, Unidad de Docencia e Investigación de Prehistoria, Arqueología e Historia Antigua, Facultad de Humanidades, Universidad de La Laguna, San Cristobal de La Laguna, Spain
- Departamento de Ciencias Históricas, Facultad de Geografía e Historia, Universidad de Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain
| | - Julia Beaumont
- School of Archaeological and Forensic Sciences, University of Bradford, Bradford, UK
| | - Jonathan Santana-Cabrera
- Departamento de Ciencias Históricas, Facultad de Geografía e Historia, Universidad de Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain
| | - Marise Gorton
- School of Archaeological and Forensic Sciences, University of Bradford, Bradford, UK
| | - Matilde Arnay-de-la-Rosa
- Departamento de Geografía e Historia, Unidad de Docencia e Investigación de Prehistoria, Arqueología e Historia Antigua, Facultad de Humanidades, Universidad de La Laguna, San Cristobal de La Laguna, Spain
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Vedel G, de la Peña E, Moreno-Rojas JM, Carranza J. Is the Intrasexual Competition in Male Red Deer Reflected in the Ratio of Stable Isotopes of Carbon and Nitrogen in Faeces? Animals (Basel) 2023; 13:2397. [PMID: 37508173 PMCID: PMC10375991 DOI: 10.3390/ani13142397] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Revised: 07/12/2023] [Accepted: 07/18/2023] [Indexed: 07/30/2023] Open
Abstract
Isotopic analysis of carbon and nitrogen in faeces is a reliable methodology for studying ecology in wildlife. Here, we tested this technique to detect variations in carbon and nitrogen isotopic ratios (δ13C and δ15N) in two different intrasexual competition scenarios of male Iberian red deer (Cervus elaphus hispanicus) using faeces of individuals collected during hunting actions in South-eastern Spain. The carbon isotopic ratio (δ13C) was not found to be significant, likely due to similar diet composition in all individuals. However, the nitrogen isotopic ratio (δ15N) was found to be lower in populations where sexual competition between males during the rut was higher compared to low-competition populations. Therefore, this study suggests a different use of proteins by an individual male red deer depending on the sexually competitive context in which he lives. Although further research is needed, these results show the potential of isotopic analysis as a tool for studying individual and populational variations in the level of intrasexual competition, with implications in evolutionary ecology and population management.
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Affiliation(s)
- Giovanni Vedel
- Wildlife Research Unit (UiRCP), University of Córdoba, 14071 Córdoba, Spain
| | - Eva de la Peña
- Wildlife Research Unit (UiRCP), University of Córdoba, 14071 Córdoba, Spain
- Instituto de Investigación en Recursos Cinegéticos, IREC (CSIC, UCLM, JCCM), Ronda de Toledo 12, 13005 Ciudad Real, Spain
| | - Jose Manuel Moreno-Rojas
- Department of Agroindustry and Food Quality, Andalusian Institute of Agricultural and Fisheries Research and Training (IFAPA), Alameda del Obispo. Avda. Menéndez Pidal, s/n., 14071 Córdoba, Spain
| | - Juan Carranza
- Wildlife Research Unit (UiRCP), University of Córdoba, 14071 Córdoba, Spain
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Chibowski P, Brzeziński M, Suska-Malawska M, Zub K. Diet/Hair and Diet/Faeces Trophic Discrimination Factors for Stable Carbon and Nitrogen Isotopes, and Hair Regrowth in the Yellow-Necked Mouse and Bank Vole. ANN ZOOL FENN 2022. [DOI: 10.5735/086.059.0115] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
Affiliation(s)
- Piotr Chibowski
- Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Żwirki i Wigury 101, PL-02-089 Warsaw, Poland
| | - Marcin Brzeziński
- Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Żwirki i Wigury 101, PL-02-089 Warsaw, Poland
| | - Małgorzata Suska-Malawska
- Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Żwirki i Wigury 101, PL-02-089 Warsaw, Poland
| | - Karol Zub
- Mammal Research Institute, Polish Academy of Sciences, Stoczek 1, PL-17-230 Białowieża, Poland
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Whiteman JP, Rodriguez Curras M, Feeser KL, Newsome SD. Dietary protein content and digestibility influences discrimination of amino acid nitrogen isotope values in a terrestrial omnivorous mammal. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2021; 35:e9073. [PMID: 33634533 DOI: 10.1002/rcm.9073] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Revised: 02/02/2021] [Accepted: 02/24/2021] [Indexed: 06/12/2023]
Abstract
RATIONALE Ecologists increasingly determine the δ15 N values of amino acids (AA) in animal tissue; "source" AA typically exhibit minor variation between diet and consumer, while "trophic" AA have increased δ15 N values in consumers. Thus, trophic-source δ15 N offsets (i.e., Δ15 NT-S ) reflect trophic position in a food web. However, even minor variations in δ15 Nsource AA values may influence the magnitude of offset that represents a trophic step, known as the trophic discrimination factor (i.e., TDFT-S ). Diet digestibility and protein content can influence the δ15 N values of bulk animal tissue, but the effects of these factors on AA Δ15 NT-S and TDFT-S in mammals are unknown. METHODS We fed captive mice (Mus musculus) either (A) a low-fat, high-fiber diet with low, intermediate, or high protein; or (B) a high-fat, low-fiber diet with low or intermediate protein. Mouse muscle and dietary protein were analyzed for bulk tissue δ15 N using elemental analyzer-isotope ratio mass spectrometry (EA-IRMS), and were also hydrolyzed into free AA that were analyzed for δ15 N using gas chromatography-combustion-IRMS. RESULTS As dietary protein increased, Δ15 NConsumer-Diet slightly declined for bulk muscle tissue in both experiments; increased for AA in the low-fat, high-fiber diet (A); and remained the same or decreased for AA in the high-fat, low-fiber diet (B). The effects of dietary protein on Δ15 NT-S and on TDFT-S varied by AA but were consistent between variables. CONCLUSIONS Diets were less digestible and included more protein in Experiment A than in Experiment B. As a result, the mice in Experiment A probably oxidized more AA, resulting in greater Δ15 NConsumer-Diet values. However, the similar responses of Δ15 NT-S and of TDFT-S to diet variation suggest that if diet samples are available, Δ15 NT-S accurately tracks trophic position. If diet samples are not available, the patterns presented here provide a basis to interpret Δ15 NT-S values. The trophic-source offset of Pro-Lys did not vary across diets, and therefore may be more reliable for omnivores than other offsets (e.g., Glu-Phe).
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Affiliation(s)
- John P Whiteman
- Department of Biological Sciences, Old Dominion University, Norfolk, VA, 23529, USA
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Mauriel Rodriguez Curras
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
- Department of Forest and Wildlife Ecology, University of Wisconsin, Madison, WI, 53706, USA
| | - Kelli L Feeser
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
- Los Alamos National Laboratory, Los Alamos, NM, 87545, USA
| | - Seth D Newsome
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
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Hoondert RPJ, van den Brink NW, van den Heuvel-Greve MJ, Ragas AMJ, Hendriks AJ. Variability in nitrogen-derived trophic levels of Arctic marine biota. Polar Biol 2020. [DOI: 10.1007/s00300-020-02782-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
AbstractStable isotopes are often used to provide an indication of the trophic level (TL) of species. TLs may be derived by using food-web-specific enrichment factors in combination with a representative baseline species. It is challenging to sample stable isotopes for all species, regions and seasons in Arctic ecosystems, e.g. because of practical constraints. Species-specific TLs derived from a single region may be used as a proxy for TLs for the Arctic as a whole. However, its suitability is hampered by incomplete knowledge on the variation in TLs. We quantified variation in TLs of Arctic species by collating data on stable isotopes across the Arctic, including corresponding fractionation factors and baseline species. These were used to generate TL distributions for species in both pelagic and benthic food webs for four Arctic areas, which were then used to determine intra-sample, intra-study, intra-region and inter-region variation in TLs. Considerable variation in TLs of species between areas was observed. This is likely due to differences in parameter choice in estimating TLs (e.g. choice of baseline species) and seasonal, temporal and spatial influences. TLs between regions were higher than the variance observed within regions, studies or samples. This implies that TLs derived within one region may not be suitable as a proxy for the Arctic as a whole. The TL distributions derived in this study may be useful in bioaccumulation and climate change studies, as these provide insight in the variability of trophic levels of Arctic species.
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Lübcker N, Whiteman JP, Millar RP, de Bruyn PJN, Newsome SD. Fasting affects amino acid nitrogen isotope values: a new tool for identifying nitrogen balance of free-ranging mammals. Oecologia 2020; 193:53-65. [PMID: 32300864 DOI: 10.1007/s00442-020-04645-5] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2019] [Accepted: 04/07/2020] [Indexed: 11/25/2022]
Abstract
Changes in the nutritional status of free-ranging animals have a strong influence on individual fitness, yet it remains challenging to monitor longitudinally. Nitrogen (δ15N) and carbon (δ13C) isotope values measured chronologically along the length of metabolically inert keratinous tissues can be used as a nutritional biomarker to retrospectively reconstruct the foraging ecology and eco-physiology of consumers. We quantitatively describe the physiological effects of fasting on amino acid metabolism using sequentially measured bulk tissue and amino acid δ15N values along the length of whiskers sampled from free-ranging juvenile, subadults, adult female, and male southern elephant seals (SES; Mirounga leonina) on Marion Island in the Southern Ocean. For both juveniles and adult females, whisker segments representing fasting had significantly higher bulk tissue δ15N values of 0.6 ± 0.5‰ and 1.3-1.8‰, respectively, in comparison to segments unaffected by fasting. We also found a large increase (2-6‰) in δ15N values for most glucogenic amino acids and a simultaneous depletion (2-3‰) of alanine in segments reflecting fasting, which enabled us to accurately predict (74%) the nutritional status of our model species. We hypothesize that the glucose-alanine cycle is the mechanism driving the observed depletion of alanine δ15N values during fasting. We demonstrated that keratinaceous tissues can be used as a longitudinal nutritional biomarker to detect changes in the nitrogen balance of an individual. Moreover, it is evident that physiological factors have an important influence on tissue δ15N values and can lead to erroneous bulk tissue or amino acid isotope-based reconstructions of foraging habits.
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Affiliation(s)
- Nico Lübcker
- Department of Zoology and Entomology, Mammal Research Institute, University of Pretoria, Private Bag X20, Hatfield, 0028, South Africa.
| | - John P Whiteman
- Department of Biological Sciences, Old Dominion University, Norfolk, VA, 23529, USA.,Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
| | - Robert P Millar
- Centre for Neuroendocrinology and Department of Immunology, Faculty of Health Sciences, University of Pretoria, Pretoria, 0001, South Africa
| | - P J Nico de Bruyn
- Department of Zoology and Entomology, Mammal Research Institute, University of Pretoria, Private Bag X20, Hatfield, 0028, South Africa
| | - Seth D Newsome
- Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA
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Tamburin E, Amador-Capitanachi MJ, Galván-Magaña F, Norris TA, Elorriaga-Verplancken FR. Isotopic variation in blood components based on their biochemistry and physiology: A comparison between sharks and fur seals. JOURNAL OF EXPERIMENTAL ZOOLOGY PART 2019; 333:104-110. [PMID: 31709773 DOI: 10.1002/jez.2330] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2019] [Revised: 09/08/2019] [Accepted: 10/11/2019] [Indexed: 11/07/2022]
Abstract
Research using stable isotopes analysis (SIA) of carbon (δ13 C) and nitrogen (δ15 N) in blood components is lacking, because of the challenge of sample collection, processing, and storage in remote areas. There also is a paucity of information regarding the effect of tissue biochemical composition on isotopic ratios with few comparisons among taxa. We collected blood samples from shortfin mako sharks (n = 70; 2016) and Guadalupe fur seals (n = 25; 2017). All samples were centrifuged to obtain plasma from sharks and serum from the Guadalupe fur seals, and all the samples were prepared for SIA and analyzed using a Costech 4010 elemental analyzer interfaced with a Delta V Plus isotope ratio mass spectrometer. We found significant differences between plasma δ13 C values of shortfin mako sharks (-17.6 ± 0.9‰) and serum of Guadalupe fur seals (-20.3 ± 1.2‰), but we did not find any differences for δ15 N values between the two species. The differences in δ13 C values between species are probably due to the specific blood composition and to the different biochemical characteristics and different adaptations within taxa. These findings highlight the importance of further research on the influence of biochemistry features on isotopic results, in this way a more accurate assessment will be possible for this factor, separating it from the dietary influences on stable isotopic values.
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Affiliation(s)
- Elena Tamburin
- Instituto Politécnico Nacional, Centro Interdisciplinario de Ciencias Marinas, La Paz, Baja California Sur, México.,Fundación Alium Pacific, Carrera 26 No. 5C-13, Cali, Colombia
| | | | - Felipe Galván-Magaña
- Instituto Politécnico Nacional, Centro Interdisciplinario de Ciencias Marinas, La Paz, Baja California Sur, México
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Amino acid isotope discrimination factors for a carnivore: physiological insights from leopard sharks and their diet. Oecologia 2018; 188:977-989. [DOI: 10.1007/s00442-018-4276-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2018] [Accepted: 10/14/2018] [Indexed: 11/26/2022]
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