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E SSA, Sharma Y, J R, Shankar V. A comparative assessment of microbial biodiesel and its life cycle analysis. Folia Microbiol (Praha) 2024; 69:521-547. [PMID: 38480635 DOI: 10.1007/s12223-024-01153-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Accepted: 02/19/2024] [Indexed: 05/30/2024]
Abstract
Biodiesel is a type of sustainable, biodegradable energy made from natural sources like vegetable oils, animal fat, and from microbes. Unlike traditional diesel, it has a lower carbon footprint and produces fewer harmful emissions when burned. Biodiesel has gained popularity as a more sustainable substitute for hydrocarbon-based diesel and may be utilized in diesel engines without any modification. In this review, biodiesel from microorganisms such as algae, yeast, and fungi and advantages over another feedstock were discussed. The life cycle evaluation of biodiesel is a thorough assessment of the ecological and economic effects of biodiesel production and use, from the extraction of raw ingredients to the waste disposal process. The life cycle analysis considers the entire process, including the production of feedstocks, the production of biodiesel, and the use of biodiesel in vehicles and other applications. Life cycle analysis of biodiesel produced from microorganisms takes into consideration the environmental impact and sustainability of each step in the production process, including the impact on land use, water use, greenhouse gas emissions, and the availability of resources. In this section, biodiesel produced from microorganisms and other raw materials, its comparisons, and also steps involved in the life cycle such as the cultivation of microorganisms, harvesting of biomass, and conversion to biodiesel were discussed. The processes like extraction and purification, hydrothermal liquefaction, and their environmental impacts were examined by using various LCA software from the previously mentioned process.
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Affiliation(s)
- Swathe Sriee A E
- School of Biosciences and Technology, Vellore Institute of Technology, Vellore 14, India
| | - Yamini Sharma
- School of Biosciences and Technology, Vellore Institute of Technology, Vellore 14, India
| | - Ranjitha J
- CO2 Research and Green Technologies Centre, Vellore Institute of Technology, Katpadi, Vellore 14, Tamil Nadu, 632014, India
| | - Vijayalakshmi Shankar
- CO2 Research and Green Technologies Centre, Vellore Institute of Technology, Katpadi, Vellore 14, Tamil Nadu, 632014, India.
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Liu X, Lyu L, Li J, Sen B, Bai M, Stajich JE, Collier JL, Wang G. Comparative Genomic Analyses of Cellulolytic Machinery Reveal Two Nutritional Strategies of Marine Labyrinthulomycetes Protists. Microbiol Spectr 2023; 11:e0424722. [PMID: 36744882 PMCID: PMC10101102 DOI: 10.1128/spectrum.04247-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Accepted: 01/11/2023] [Indexed: 02/07/2023] Open
Abstract
Labyrinthulomycetes are a group of ubiquitous and diverse unicellular Stramenopiles and have long been known for their vital role in ocean carbon cycling. However, their ecological function from the perspective of organic matter degradation remains poorly understood. This study reports high-quality genomes of two newly isolated Labyrinthulomycetes strains, namely, Botryochytrium sp. strain S-28 and Oblongichytrium sp. strain S-429, and provides molecular analysis of their ecological functions using comparative genomics and a biochemical assay. Our results suggest that Labyrinthulomycetes may occupy multiple ecological niches in marine ecosystems because of the significant differences in gene function among different genera. Certain strains could degrade wheat bran independently by secreting cellulase. The key glycoside hydrolase families (GH1, GH5, and GH9) related to cellulase and the functional domains of carbohydrate-active enzymes (CAZymes) were more enriched in their genomes. This group can actively participate in marine biochemical cycles as decomposers. In contrast, other strains that could not produce cellulase may thrive as "leftover scavengers" and act as a source of nutrients to the higher-trophic-level plankton. In addition, our findings emphasize the dual roles of endoglucanase, acting as both exo- and endoglucanases, in the process of cellulose degradation. Using genomic, biochemical, and phylogenetic analyses, our study provides a broader insight into the nutritional patterns and ecological functions of Labyrinthulomycetes. IMPORTANCE Unicellular heterotrophic eukaryotes are an important component of marine ecosystems. However, their ecological functions and modes of nutrition remain largely unknown. Our current understanding of marine microbial ecology is incomplete without integrating these heterotrophic microeukaryotes into the food web models. This study focuses on the unicellular fungus-like protists Labyrinthulomycetes and provides two high-quality genomes of cellulase-producing Labyrinthulomycetes. Our study uncovers the basis of their cellulase production by deciphering the results of genomic, biochemical, and phylogenetic analyses. This study instigates a further investigation of the molecular mechanism of organic matter utilization by Labyrinthulomycetes in the world's oceans.
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Affiliation(s)
- Xiuping Liu
- Center for Marine Environmental Ecology, School of Environmental Science and Engineering, Tianjin University, Tianjin, China
| | - Lu Lyu
- Center for Marine Environmental Ecology, School of Environmental Science and Engineering, Tianjin University, Tianjin, China
| | - Jiaqian Li
- Center for Marine Environmental Ecology, School of Environmental Science and Engineering, Tianjin University, Tianjin, China
| | - Biswarup Sen
- Center for Marine Environmental Ecology, School of Environmental Science and Engineering, Tianjin University, Tianjin, China
| | - Mohan Bai
- Center for Marine Environmental Ecology, School of Environmental Science and Engineering, Tianjin University, Tianjin, China
| | - Jason E. Stajich
- Department of Plant Pathology and Microbiology, University of California, Riverside, California, USA
| | - Jackie L. Collier
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, New York, USA
| | - Guangyi Wang
- Center for Marine Environmental Ecology, School of Environmental Science and Engineering, Tianjin University, Tianjin, China
- Frontiers Science Center for Synthetic Biology, Tianjin University, Tianjin, China
- Key Laboratory of Systems Bioengineering (MOE), Tianjin University, Tianjin, China
- Center for Biosafety Research and Strategy, Tianjin University, Tianjin, China
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Kothri M, Mavrommati M, Elazzazy AM, Baeshen MN, Moussa TAA, Aggelis G. Microbial sources of polyunsaturated fatty acids (PUFAs) and the prospect of organic residues and wastes as growth media for PUFA-producing microorganisms. FEMS Microbiol Lett 2020; 367:5735438. [PMID: 32053204 DOI: 10.1093/femsle/fnaa028] [Citation(s) in RCA: 42] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2019] [Accepted: 02/11/2020] [Indexed: 12/17/2022] Open
Abstract
The discovery of non-fish sources of polyunsaturated fatty acids (PUFAs) is of great biotechnological importance. Although various oleaginous microalgae and fungi are able of accumulating storage lipids (single cell oils - SCOs) containing PUFAs, the industrial applications utilizing these organisms are rather limited due to the high-fermentation cost. However, combining SCO production with other biotechnological applications, including waste and by-product valorization, can overcome this difficulty. In the current review, we present the major sources of fungi (i.e. members of Mucoromycota, fungoid-like Thraustochytrids and genetically modified strains of Yarrowia lipolytica) and microalgae (e.g. Isochrysis, NannochloropsisandTetraselmis) that have come recently to the forefront due to their ability to produce PUFAs. Approaches adopted in order to increase PUFA productivity and the potential of using various residues, such as agro-industrial, food and aquaculture wastes as fermentation substrates for SCO production have been considered and discussed. We concluded that several organic residues can be utilized as feedstock in the SCO production increasing the competitiveness of oleaginous organisms against conventional PUFA producers.
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Affiliation(s)
- Maria Kothri
- Unit of Microbiology, Division of Genetics, Cell and Developmental Biology, Department of Biology, University of Patras, 26504 Patras, Greece
| | - Maria Mavrommati
- Unit of Microbiology, Division of Genetics, Cell and Developmental Biology, Department of Biology, University of Patras, 26504 Patras, Greece
| | - Ahmed M Elazzazy
- Department of Biology, Faculty of Science, University of Jeddah, 23218 Jeddah, Saudi Arabi.,Department of Chemistry of Natural and Microbial Products, Division of Pharmaceutical and Drug Industries, National Research Centre, 12622 Dokki, Giza, Egypt
| | - Mohamed N Baeshen
- Department of Biology, Faculty of Science, University of Jeddah, 23218 Jeddah, Saudi Arabi
| | - Tarek A A Moussa
- Department of Biology, Faculty of Science, University of Jeddah, 23218 Jeddah, Saudi Arabi.,Botany and Microbiology Department, Faculty of Science, Cairo University, 12613 Giza, Egypt
| | - George Aggelis
- Unit of Microbiology, Division of Genetics, Cell and Developmental Biology, Department of Biology, University of Patras, 26504 Patras, Greece.,Department of Biology, Faculty of Science, University of Jeddah, 23218 Jeddah, Saudi Arabi
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Moon M, Park WK, Suh WI, Chang YK, Lee B. Biological Carbon Recovery from Sugar Refinery Washing Water into Microalgal DHA: Medium Optimization and Stress Induction. Sci Rep 2019; 9:19959. [PMID: 31882916 PMCID: PMC6934592 DOI: 10.1038/s41598-019-56406-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2019] [Accepted: 12/11/2019] [Indexed: 11/09/2022] Open
Abstract
Sugar refinery washing water (SRWW) contains abundant levels of carbon sources and lower levels of contaminants than other types of wastewater, which makes it ideal for heterotrophic cultivation of microalgae. Here, carbon sources in SRWW were utilized for conversion into the form of value-added docosahexaenoic acid (DHA) using Aurantiochytrium sp. KRS101. Since SRWW is not a defined medium, serial optimizations were performed to maximize the biomass, lipid, and DHA yields by adjusting the nutrient (carbon, nitrogen, and phosphorus) concentrations as well as the application of salt stress. Optimum growth performance was achieved with 30% dilution of SRWW containing a total organic carbon of 95,488 mg L−1. Increasing the nutrient level in the medium by supplementation of 9 g L−1 KH2PO4 and 20 g L−1 yeast extract further improved the biomass yield by an additional 14%, albeit at the expense of a decrease in the lipid content. Maximum biomass, lipid, and DHA yields (22.9, 6.33, and 2.03 g L−1, respectively) were achieved when 35 g L−1 sea salt was applied on a stationary phase for osmotic stress. These results demonstrate the potential of carbon-rich sugar refinery washing water for DHA production using Aurantiochytrium sp. KRS101 and proper cultivation strategy.
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Affiliation(s)
- Myounghoon Moon
- Gwangju Bio/Energy R&D Center, Korea Institute of Energy Research (KIER), 25, Samso-ro 270beon-gil, Buk-gu, Gwangju, 61003, Republic of Korea
| | - Won-Kun Park
- Department of Chemistry & Energy Engineering, Sangmyung University, 20 Hongjimun 2-gil, Jongno-gu, Seoul, 03016, Republic of Korea
| | - William I Suh
- Advanced Biomass R&D Center, Korea Advanced Institute of Science & Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea
| | - Yong Keun Chang
- Advanced Biomass R&D Center, Korea Advanced Institute of Science & Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea. .,Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science & Technology (KAIST), 291 Daehak-ro, Yuseong-gu, Daejeon, 34141, Republic of Korea.
| | - Bongsoo Lee
- Department of Microbial and Nano Materials, College of Science and Technology, Mokwon University, 88 Doanbuk-ro, Seo-Gu, Daejeon, 35349, Republic of Korea.
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Juntila DJ, Yoneda K, Suzuki I. Genetic modification of the thraustochytrid Aurantiochytrium sp. 18W-13a for cellobiose utilization by secretory expression of β-glucosidase from Aspergillus aculeatus. ALGAL RES 2019. [DOI: 10.1016/j.algal.2019.101503] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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Furlan VJM, Batista I, Bandarra N, Mendes R, Cardoso C. Conditions for the Production of Carotenoids by Thraustochytrium sp. ATCC 26185 and Aurantiochytrium sp. ATCC PRA-276. JOURNAL OF AQUATIC FOOD PRODUCT TECHNOLOGY 2019. [DOI: 10.1080/10498850.2019.1603175] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
| | - Irineu Batista
- Instituto Português do Mar e da Atmosfera (IPMA), Lisboa, Portugal
| | - Narcisa Bandarra
- Instituto Português do Mar e da Atmosfera (IPMA), Lisboa, Portugal
| | - Rogério Mendes
- Instituto Português do Mar e da Atmosfera (IPMA), Lisboa, Portugal
| | - Carlos Cardoso
- Instituto Português do Mar e da Atmosfera (IPMA), Lisboa, Portugal
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Genomics, Biology and Phylogeny Aurantiochytrium acetophilum sp. nov. (Thraustrochytriaceae), Including First Evidence of Sexual Reproduction. Protist 2019; 170:209-232. [DOI: 10.1016/j.protis.2019.02.004] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2018] [Revised: 02/25/2019] [Accepted: 02/26/2019] [Indexed: 01/06/2023]
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Kim K, Shin H, Moon M, Ryu BG, Han JI, Yang JW, Chang YK. Evaluation of various harvesting methods for high-density microalgae, Aurantiochytrium sp. KRS101. BIORESOURCE TECHNOLOGY 2015; 198:828-835. [PMID: 26457831 DOI: 10.1016/j.biortech.2015.09.103] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2015] [Revised: 09/21/2015] [Accepted: 09/22/2015] [Indexed: 06/05/2023]
Abstract
Five technologies, coagulation, electro-flotation (EF), electro-coagulation-flotation (ECF), centrifugation, and membrane filtration, were systematically assessed for their adequacy of harvesting Aurantiochytrium sp. KRS101, a heterotrophic microalgal species that has much higher biomass concentration than photoautotrophic species. Coagulation, EF, and ECF were found to have limited efficiency. Centrifugation was overly powerful to susceptible cells like Aurantiochytrium sp. KRS101, inducing cell rupture and consequently biomass loss of over 13%. Membrane filtration, in particular equipped with an anti-fouling turbulence generator, turned out to be best suited: nearly 100% of harvesting efficiency and low water content in harvested biomass were achieved. With rotation rate increased, high permeate fluxes could be attained even with extremely concentrated biomass: e.g., 219.0 and 135.0 L/m(2)/h at 150.0 and 203.0 g/L, respectively. Dynamic filtration appears to be indeed a suitable means especially to obtain highly concentrated biomass that have no need of dewatering and can be directly processed.
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Affiliation(s)
- Kyochan Kim
- Department of Chemical and Biomolecular Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon 305-701, Republic of Korea
| | - Heewon Shin
- Department of Chemical and Biomolecular Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon 305-701, Republic of Korea
| | - Myounghoon Moon
- Department of Chemical and Biomolecular Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon 305-701, Republic of Korea
| | - Byung-Gon Ryu
- Decontamination and Decommissioning Research Division, Korea Atomic Energy Research Institute (KAERI), 989-111 Daedukdaero, Yuseong-gu, Daejeon 305-353, Republic of Korea
| | - Jong-In Han
- Department of Civil and Environmental Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon 305-701, Republic of Korea
| | - Ji-Won Yang
- Department of Chemical and Biomolecular Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon 305-701, Republic of Korea
| | - Yong Keun Chang
- Department of Chemical and Biomolecular Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon 305-701, Republic of Korea; Advanced Biomass R&D Center, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon 305-701, Republic of Korea.
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Mechanisms of fatty acid synthesis in marine fungus-like protists. Appl Microbiol Biotechnol 2015; 99:8363-75. [DOI: 10.1007/s00253-015-6920-7] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2015] [Revised: 07/30/2015] [Accepted: 08/04/2015] [Indexed: 01/10/2023]
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Gupta A, Abraham RE, Barrow CJ, Puri M. Omega-3 fatty acid production from enzyme saccharified hemp hydrolysate using a novel marine thraustochytrid strain. BIORESOURCE TECHNOLOGY 2015; 184:373-378. [PMID: 25497057 DOI: 10.1016/j.biortech.2014.11.031] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2014] [Revised: 11/06/2014] [Accepted: 11/09/2014] [Indexed: 06/04/2023]
Abstract
In this work, a newly isolated marine thraustochytrid strain, Schizochytrium sp. DT3, was used for omega-3 fatty acid production by growing on lignocellulose biomass obtained from local hemp hurd (Cannabis sativa) biomass. Prior to enzymatic hydrolysis, hemp was pretreated with sodium hydroxide to open the biomass structure for the production of sugar hydrolysate. The thraustochytrid strain was able to grow on the sugar hydrolysate and accumulated polyunsaturated fatty acids (PUFAs). At the lowest carbon concentration of 2%, the PUFAs productivity was 71% in glucose and 59% in the sugars hydrolysate, as a percentage of total fatty acids. Saturated fatty acids (SFAs) levels were highest at about 49% of TFA using 6% glucose as the carbon source. SFAs of 41% were produced using 2% of SH. This study demonstrates that SH produced from lignocellulose biomass is a potentially useful carbon source for the production of omega-3 fatty acids in thraustochytrids, as demonstrated using the new strain, Schizochytrium sp. DT3.
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Affiliation(s)
- Adarsha Gupta
- Centre for Chemistry and Biotechnology, Geelong Technology Precinct, Deakin University, Geelong, Waurn Ponds, Victoria 3217, Australia
| | - Reinu E Abraham
- Centre for Chemistry and Biotechnology, Geelong Technology Precinct, Deakin University, Geelong, Waurn Ponds, Victoria 3217, Australia
| | - Colin J Barrow
- Centre for Chemistry and Biotechnology, Geelong Technology Precinct, Deakin University, Geelong, Waurn Ponds, Victoria 3217, Australia
| | - Munish Puri
- Centre for Chemistry and Biotechnology, Geelong Technology Precinct, Deakin University, Geelong, Waurn Ponds, Victoria 3217, Australia.
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Gupta A, Singh D, Barrow CJ, Puri M. Exploring potential use of Australian thraustochytrids for the bioconversion of glycerol to omega-3 and carotenoids production. Biochem Eng J 2013. [DOI: 10.1016/j.bej.2013.04.028] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Ryu BG, Kim K, Kim J, Han JI, Yang JW. Use of organic waste from the brewery industry for high-density cultivation of the docosahexaenoic acid-rich microalga, Aurantiochytrium sp. KRS101. BIORESOURCE TECHNOLOGY 2013; 129:351-9. [PMID: 23262011 DOI: 10.1016/j.biortech.2012.11.049] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2012] [Revised: 11/07/2012] [Accepted: 11/11/2012] [Indexed: 05/26/2023]
Abstract
In the present study, spent yeast from a brewery was used as the growth substrate for the docosahexaenoic acid (DHA)-rich microalga, Aurantiochytrium sp. KRS101. A significant biomass yield (6.69 g/l/d) was obtained using only spent yeast as the growth substrate, with simple stirring as pretreatment. Maximization of nutrient utilization through the use of stepwise cultivation increased the yield to 31.8 g/l of biomass. DHA constituted 38.2% (w/w) of the total fatty acids, and the highest DHA productivity was observed when the C/N ratio was 20:1 (w/w). Spent yeast thus served as a good growth substrate for the production of DHA. Economic assessment revealed that stepwise cultivation using spent yeast as either the sole growth substrate or as a nutrient source could substantially reduce the production cost of microalgal DHA.
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Affiliation(s)
- Byung-Gon Ryu
- Environmental and Energy Program, Department of Chemical and Biomolecular Engineering, KAIST, 291 Daehakno, Yuseong-gu, Daejeon 305-701, Republic of Korea
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