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Calvaruso C, Stefanidis K, Büchel C. Photoacclimation impacts the molecular features of photosystem supercomplexes in the centric diatom Thalassiosira pseudonana. BIOCHIMICA ET BIOPHYSICA ACTA. BIOENERGETICS 2022; 1863:148589. [PMID: 35779585 DOI: 10.1016/j.bbabio.2022.148589] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Revised: 06/10/2022] [Accepted: 06/24/2022] [Indexed: 06/15/2023]
Abstract
In diatoms, light-harvesting processes take place in a specific group of proteins, called fucoxanthin chlorophyll a/c proteins (FCP). This group includes many members and represents the major characteristic of the diatom photosynthetic apparatus, with specific pigments bound (chlorophyll c, fucoxanthin, diadino- and diatoxanthin besides chlorophyll a). In thylakoids, FCP and photosystems (PS) form multimeric supercomplexes. In this study, we compared the biochemical properties of PS supercomplexes isolated from Thalassiosira pseudonana cells grown under low light or high light conditions, respectively. High light acclimation changed the molecular features of the PS and their ratio in thylakoids. In PSII, no obvious changes in polypeptide composition were observed, whereas for PSI changes in one specific group of FCP proteins were detected. As reported before, the amount of xanthophyll cycle pigments and their de-epoxidation ratio was increased in PSI under HL. In PSII, however, no additional xanthophyll cycle pigments occurred, but the de-epoxidation ratio was increased as well. This comparison suggests how mechanisms of photoprotection might take place within and in the proximity of the PS, which gives new insights into the capacity of diatoms to adapt to different conditions and in different environments.
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Affiliation(s)
- Claudio Calvaruso
- Institute of Molecular Biosciences, Goethe University Frankfurt, 60438 Frankfurt am Main, Germany
| | - Konstantinos Stefanidis
- Institute of Molecular Biosciences, Goethe University Frankfurt, 60438 Frankfurt am Main, Germany
| | - Claudia Büchel
- Institute of Molecular Biosciences, Goethe University Frankfurt, 60438 Frankfurt am Main, Germany.
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Arshad R, Calvaruso C, Boekema EJ, Büchel C, Kouřil R. Revealing the architecture of the photosynthetic apparatus in the diatom Thalassiosira pseudonana. PLANT PHYSIOLOGY 2021; 186:2124-2136. [PMID: 33944951 PMCID: PMC8331139 DOI: 10.1093/plphys/kiab208] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Accepted: 04/21/2021] [Indexed: 05/04/2023]
Abstract
Diatoms are a large group of marine algae that are responsible for about one-quarter of global carbon fixation. Light-harvesting complexes of diatoms are formed by the fucoxanthin chlorophyll a/c proteins and their overall organization around core complexes of photosystems (PSs) I and II is unique in the plant kingdom. Using cryo-electron tomography, we have elucidated the structural organization of PSII and PSI supercomplexes and their spatial segregation in the thylakoid membrane of the model diatom species Thalassiosira pseudonana. 3D sub-volume averaging revealed that the PSII supercomplex of T. pseudonana incorporates a trimeric form of light-harvesting antenna, which differs from the tetrameric antenna observed previously in another diatom, Chaetoceros gracilis. Surprisingly, the organization of the PSI supercomplex is conserved in both diatom species. These results strongly suggest that different diatom classes have various architectures of PSII as an adaptation strategy, whilst a convergent evolution occurred concerning PSI and the overall plastid structure.
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Affiliation(s)
- Rameez Arshad
- Department of Biophysics, Faculty of Science, Centre of the Region Haná for Biotechnological and Agricultural Research, Palacký University, Olomouc 78371, Czech Republic
- Electron Microscopy Group, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen 9747AG, The Netherlands
| | - Claudio Calvaruso
- Institute for Molecular Biosciences, Goethe University of Frankfurt, Frankfurt 60438, Germany
| | - Egbert J Boekema
- Electron Microscopy Group, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen 9747AG, The Netherlands
| | - Claudia Büchel
- Institute for Molecular Biosciences, Goethe University of Frankfurt, Frankfurt 60438, Germany
| | - Roman Kouřil
- Department of Biophysics, Faculty of Science, Centre of the Region Haná for Biotechnological and Agricultural Research, Palacký University, Olomouc 78371, Czech Republic
- Author for communication:
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Marella TK, López-Pacheco IY, Parra-Saldívar R, Dixit S, Tiwari A. Wealth from waste: Diatoms as tools for phycoremediation of wastewater and for obtaining value from the biomass. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 724:137960. [PMID: 32408422 DOI: 10.1016/j.scitotenv.2020.137960] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Revised: 03/13/2020] [Accepted: 03/13/2020] [Indexed: 06/11/2023]
Abstract
Diatoms are a type of microalgae with diverse capabilities which make them useful for multiple applications. The abundance of diatoms in water bodies facilitates the removal of pollutants from wastewater originating from different industries, such as agriculture and other anthropogenic sources. The unique photosynthetic, cellular and metabolic characteristics of diatoms allows them to utilize pollutants like nitrate, iron, phosphate, molybdenum, silica, and heavy metals, such as copper, cadmium, chromium, lead, etc., which make diatoms a good option for wastewater treatment. In addition, the biomass produced by diatoms growth on wastewaters has diverse applications and can, therefore, be valuable. This review focusses on the unique capabilities of diatoms for wastewater remediation and the capture of carbon dioxide, concomitant with the generation of valuable products. Diatom biorefinery can be a sustainable solution to wastewater management, and the biomass obtained from treatment can be turned into biofuels, biofertilizers, nutritional supplements for animal production, and used for pharmaceutical applications containing bioactive compounds like EPA, DHA and pigments such as fucoxanthin.
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Affiliation(s)
- Thomas Kiran Marella
- International Crop Research Institute for Semi-arid Tropics (ICRISAT), Patancheru 502 324, Telangana State, India
| | - Itzel Y López-Pacheco
- Tecnologico de Monterrey, School of Engineering and Sciences, Campus Monterrey, Ave. Eugenio Garza Sada 2501, CP 64849 Monterrey, N.L., Mexico
| | - Roberto Parra-Saldívar
- Tecnologico de Monterrey, School of Engineering and Sciences, Campus Monterrey, Ave. Eugenio Garza Sada 2501, CP 64849 Monterrey, N.L., Mexico
| | - Sreenath Dixit
- International Crop Research Institute for Semi-arid Tropics (ICRISAT), Patancheru 502 324, Telangana State, India
| | - Archana Tiwari
- Diatom Research Laboratory, Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh, 201 313, India.
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Kiran Marella T, Saxena A, Tiwari A. Diatom mediated heavy metal remediation: A review. BIORESOURCE TECHNOLOGY 2020; 305:123068. [PMID: 32156552 DOI: 10.1016/j.biortech.2020.123068] [Citation(s) in RCA: 48] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2019] [Revised: 02/15/2020] [Accepted: 02/18/2020] [Indexed: 05/09/2023]
Abstract
Exposure to heavy metals is a major threat to aquatic bodies and is a global concern to our four main spheres of the earth viz. atmosphere, biosphere, hydrosphere, and lithosphere. The biosorption of pollutants using naturally inspired sources like microalgae has considerable advantages. Diatoms are the most dominant and diverse group of phytoplankton which accounts for 45% oceanic primary productivity. They perform a pioneer part in the biogeochemistry of metals in both fresh and marine water ecosystems. The diatoms play a significant role in degradation, speciation, and detoxification of chemical wastes and hazardous metals from polluted sites. Herein, an overview is presented about the ability of diatom algae to phycoremediate heavy metals by passive adsorption and active assimilation from their aqueous environments with an emphasis on extracellular and intracellular mechanisms involved in contaminant uptake through the frustules for preventing heavy metal toxicity.
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Affiliation(s)
- Thomas Kiran Marella
- International Crop Research Institute for Semi-arid Tropics (ICRISAT), Patancheru 502 324, Telangana State, India
| | - Abhishek Saxena
- Diatom Research Laboratory, Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh 201 313, India
| | - Archana Tiwari
- Diatom Research Laboratory, Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh 201 313, India.
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Sendra M, Moreno-Garrido I, Blasco J, Araújo CVM. Effect of erythromycin and modulating effect of CeO 2 NPs on the toxicity exerted by the antibiotic on the microalgae Chlamydomonas reinhardtii and Phaeodactylum tricornutum. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2018; 242:357-366. [PMID: 29990943 DOI: 10.1016/j.envpol.2018.07.009] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2018] [Revised: 06/19/2018] [Accepted: 07/03/2018] [Indexed: 06/08/2023]
Abstract
Erythromycin is an antibiotic employed in the treatment of infections caused by Gram positive microorganisms and the increasing use has made it a contaminant of emerging concern in aqueous ecosystems. Cerium oxide nanoparticles (CeO2 NPs), which are known to have catalytic and antioxidant properties, have also become contaminants of emerging concern. Due to the high reactivity of CeO2 NPs, they can interact with erythromycin magnifying their effects or on the other hand, considering the redox potential of CeO2 NPs, it can alleviate the toxicity of erythromycin. The present study was carried out to assess the toxicity of both single compounds as well as mixed on Chlamydomonas reinhardtii and Phaeodactylum tricornutum (freshwater and marine microalgae respectively) employed as target species in ecotoxicological tests. Mechanisms of oxidative damage and those harmful to the photosynthetic apparatus were studied in order to know the toxic mechanisms of erythromycin and the joint effects with CeO2 NPs. Results showed that erythromycin inhibited the microalgae population growth and effective quantum yield of PSII (E.Q.Y.) in both microalgae. However, the freshwater microalgae Chlamydomonas reinhardtii was more sensitive than the marine diatom Phaeodactylum tricornutum. Responses related to the photosynthetic apparatus such as E.Q.Y. was affected by the exposure to erythromycin of both microalgae, as chloroplasts are target organelle for this antibiotic. Mixed experiments (CeO2 NPs + erythromycin) showed the protective role of CeO2 NPs in both microalgae preventing erythromycin toxicity in toxicological responses such as the growth of the microalgae population and E.Q.Y.
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Affiliation(s)
- Marta Sendra
- Department of Ecology and Coastal Management, Institute of Marine Sciences of Andalusia (CSIC), Campus Río S. Pedro, 11510, Puerto Real, Cádiz, Spain.
| | - Ignacio Moreno-Garrido
- Department of Ecology and Coastal Management, Institute of Marine Sciences of Andalusia (CSIC), Campus Río S. Pedro, 11510, Puerto Real, Cádiz, Spain
| | - Julián Blasco
- Department of Ecology and Coastal Management, Institute of Marine Sciences of Andalusia (CSIC), Campus Río S. Pedro, 11510, Puerto Real, Cádiz, Spain
| | - Cristiano V M Araújo
- Department of Ecology and Coastal Management, Institute of Marine Sciences of Andalusia (CSIC), Campus Río S. Pedro, 11510, Puerto Real, Cádiz, Spain
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7
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Lepetit B, Gélin G, Lepetit M, Sturm S, Vugrinec S, Rogato A, Kroth PG, Falciatore A, Lavaud J. The diatom Phaeodactylum tricornutum adjusts nonphotochemical fluorescence quenching capacity in response to dynamic light via fine-tuned Lhcx and xanthophyll cycle pigment synthesis. THE NEW PHYTOLOGIST 2017; 214:205-218. [PMID: 27870063 DOI: 10.1111/nph.14337] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2016] [Accepted: 10/17/2016] [Indexed: 05/24/2023]
Abstract
Diatoms contain a highly flexible capacity to dissipate excessively absorbed light by nonphotochemical fluorescence quenching (NPQ) based on the light-induced conversion of diadinoxanthin (Dd) into diatoxanthin (Dt) and the presence of Lhcx proteins. Their NPQ fine regulation on the molecular level upon a shift to dynamic light conditions is unknown. We investigated the regulation of Dd + Dt amount, Lhcx gene and protein synthesis and NPQ capacity in the diatom Phaeodactylum tricornutum after a change from continuous low light to 3 d of sine (SL) or fluctuating (FL) light conditions. Four P. tricornutum strains with different NPQ capacities due to different expression of Lhcx1 were included. All strains responded to dynamic light comparably, independently of initial NPQ capacity. During SL, NPQ capacity was strongly enhanced due to a gradual increase of Lhcx2 and Dd + Dt amount. During FL, cells enhanced their NPQ capacity on the first day due to increased Dd + Dt, Lhcx2 and Lhcx3; already by the second day light acclimation was accomplished. While quenching efficiency of Dt was strongly lowered during SL conditions, it remained high throughout the whole FL exposure. Our results highlight a more balanced and cost-effective photoacclimation strategy of P. tricornutum under FL than under SL conditions.
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Affiliation(s)
- Bernard Lepetit
- UMR7266 'LIENSs', CNRS Université de La Rochelle, Institut du Littoral et de l'Environnement, 2 rue Olympe de Gouges, La Rochelle, 17000, France
- Zukunftskolleg, Pflanzliche Ökophysiologie, Universität Konstanz, Konstanz, 78457, Germany
| | - Gautier Gélin
- UMR7266 'LIENSs', CNRS Université de La Rochelle, Institut du Littoral et de l'Environnement, 2 rue Olympe de Gouges, La Rochelle, 17000, France
| | - Mariana Lepetit
- UMR7266 'LIENSs', CNRS Université de La Rochelle, Institut du Littoral et de l'Environnement, 2 rue Olympe de Gouges, La Rochelle, 17000, France
| | - Sabine Sturm
- Zukunftskolleg, Pflanzliche Ökophysiologie, Universität Konstanz, Konstanz, 78457, Germany
| | - Sascha Vugrinec
- Zukunftskolleg, Pflanzliche Ökophysiologie, Universität Konstanz, Konstanz, 78457, Germany
| | - Alessandra Rogato
- Institute of Biosciences and BioResources, CNR, Via P. Castellino 111, Naples, 80131, Italy
- Stazione Zoologica Anton Dohrn Villa Comunale, Naples, 80121, Italy
| | - Peter G Kroth
- Zukunftskolleg, Pflanzliche Ökophysiologie, Universität Konstanz, Konstanz, 78457, Germany
| | - Angela Falciatore
- Laboratoire de Biologie Computationnelle et Quantitative, Sorbonne Universités, UPMC, Institut de Biologie Paris-Seine, CNRS, 15 rue de l'Ecole de Médecine, Paris, 75006, France
| | - Johann Lavaud
- UMR7266 'LIENSs', CNRS Université de La Rochelle, Institut du Littoral et de l'Environnement, 2 rue Olympe de Gouges, La Rochelle, 17000, France
- Département de Biologie, UMI 3376 TAKUVIK, CNRS/Université Laval, Pavillon Alexandre-Vachon, 1045 avenue de la Médecine, Québec, QC, G1V 0A6, Canada
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8
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Laviale M, Barnett A, Ezequiel J, Lepetit B, Frankenbach S, Méléder V, Serôdio J, Lavaud J. Response of intertidal benthic microalgal biofilms to a coupled light-temperature stress: evidence for latitudinal adaptation along the Atlantic coast of Southern Europe. Environ Microbiol 2015; 17:3662-77. [DOI: 10.1111/1462-2920.12728] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2014] [Revised: 10/09/2014] [Accepted: 11/23/2014] [Indexed: 11/29/2022]
Affiliation(s)
- Martin Laviale
- Departamento de Biologia and CESAM - Centro de Estudos do Ambiente e do Mar; Universidade de Aveiro; Aveiro Portugal
| | - Alexandre Barnett
- UMRi7266 LIENSs ‘Littoral, Environnement et Sociétés’; CNRS/Université de La Rochelle; Institut du Littoral et de l'Environnement; La Rochelle France
| | - João Ezequiel
- Departamento de Biologia and CESAM - Centro de Estudos do Ambiente e do Mar; Universidade de Aveiro; Aveiro Portugal
| | - Bernard Lepetit
- UMRi7266 LIENSs ‘Littoral, Environnement et Sociétés’; CNRS/Université de La Rochelle; Institut du Littoral et de l'Environnement; La Rochelle France
| | - Silja Frankenbach
- Departamento de Biologia and CESAM - Centro de Estudos do Ambiente e do Mar; Universidade de Aveiro; Aveiro Portugal
| | - Vona Méléder
- LUNAM Université; Université de Nantes; EA 21 60 MMS ‘Mer, Molécules, Santé’; Nantes France
| | - João Serôdio
- Departamento de Biologia and CESAM - Centro de Estudos do Ambiente e do Mar; Universidade de Aveiro; Aveiro Portugal
| | - Johann Lavaud
- UMRi7266 LIENSs ‘Littoral, Environnement et Sociétés’; CNRS/Université de La Rochelle; Institut du Littoral et de l'Environnement; La Rochelle France
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9
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Goss R, Lepetit B. Biodiversity of NPQ. JOURNAL OF PLANT PHYSIOLOGY 2015; 172:13-32. [PMID: 24854581 DOI: 10.1016/j.jplph.2014.03.004] [Citation(s) in RCA: 241] [Impact Index Per Article: 26.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2014] [Revised: 03/10/2014] [Accepted: 03/11/2014] [Indexed: 05/21/2023]
Abstract
In their natural environment plants and algae are exposed to rapidly changing light conditions and light intensities. Illumination with high light intensities has the potential to overexcite the photosynthetic pigments and the electron transport chain and thus induce the production of toxic reactive oxygen species (ROS). To prevent damage by the action of ROS, plants and algae have developed a multitude of photoprotection mechanisms. One of the most important protection mechanisms is the dissipation of excessive excitation energy as heat in the light-harvesting complexes of the photosystems. This process requires a structural change of the photosynthetic antenna complexes that are normally optimized with regard to efficient light-harvesting. Enhanced heat dissipation in the antenna systems is accompanied by a strong quenching of the chlorophyll a fluorescence and has thus been termed non-photochemical quenching of chlorophyll a fluorescence, NPQ. The general importance of NPQ for the photoprotection of plants and algae is documented by its wide distribution in the plant kingdom. In the present review we will summarize the present day knowledge about NPQ in higher plants and different algal groups with a special focus on the molecular mechanisms that lead to the structural rearrangements of the antenna complexes and enhanced heat dissipation. We will present the newest models for NPQ in higher plants and diatoms and will compare the features of NPQ in different algae with those of NPQ in higher plants. In addition, we will briefly address evolutionary aspects of NPQ, i.e. how the requirements of NPQ have changed during the transition of plants from the aquatic habitat to the land environment. We will conclude with a presentation of open questions regarding the mechanistic basis of NPQ and suggestions for future experiments that may serve to obtain this missing information.
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Affiliation(s)
- Reimund Goss
- Institut für Biologie, Universität Leipzig, Johannisallee 21-23, D-04103 Leipzig, Germany.
| | - Bernard Lepetit
- Institut für Biologie, Universität Konstanz, Universitätsstrasse 10, D-78457 Konstanz, Germany
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Gardian Z, Litvín R, Bína D, Vácha F. Supramolecular organization of fucoxanthin-chlorophyll proteins in centric and pennate diatoms. PHOTOSYNTHESIS RESEARCH 2014; 121:79-86. [PMID: 24715699 DOI: 10.1007/s11120-014-9998-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2013] [Accepted: 03/24/2014] [Indexed: 06/03/2023]
Abstract
Fucoxanthin-chlorophyll proteins (FCP) are the major light-harvesting proteins of diatom algae, a major contributor to marine carbon fixation. FCP complexes from representatives of centric (Cyclotella meneghiniana) and pennate (Phaeodactylum tricornutum) diatoms were prepared by sucrose gradient centrifugation and studied by means of electron microscopy followed by single particle analysis. The oligomeric FCP from a centric diatom were observed to take the form of unusual chain-like or circular shapes, a very unique supramolecular assembly for such antennas. The existence of the often disputed oligomeric form of FCP in pennate diatoms has been confirmed. Contrary to the centric diatom FCP, pennate diatom FCP oligomers are very similar to oligomeric antennas from related heterokont (Stramenopila) algae. Evolutionary aspects of the presence of novel light-harvesting protein arrangement in centric diatoms are discussed.
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Affiliation(s)
- Zdenko Gardian
- Institute of Plant Molecular Biology, Biology Centre ASCR, Branisovska 31, 37005, Ceske Budejovice, Czech Republic
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Juhas M, von Zadow A, Spexard M, Schmidt M, Kottke T, Büchel C. A novel cryptochrome in the diatomPhaeodactylum tricornutuminfluences the regulation of light-harvesting protein levels. FEBS J 2014; 281:2299-311. [DOI: 10.1111/febs.12782] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2013] [Revised: 03/06/2014] [Accepted: 03/11/2014] [Indexed: 11/30/2022]
Affiliation(s)
- Matthias Juhas
- Institute of Molecular Biosciences; University of Frankfurt; Germany
| | - Andrea von Zadow
- Institute of Molecular Biosciences; University of Frankfurt; Germany
| | - Meike Spexard
- Physical and Biophysical Chemistry; Bielefeld University; Germany
| | - Matthias Schmidt
- Institute of Molecular Biosciences; University of Frankfurt; Germany
| | - Tilman Kottke
- Physical and Biophysical Chemistry; Bielefeld University; Germany
| | - Claudia Büchel
- Institute of Molecular Biosciences; University of Frankfurt; Germany
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12
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Moore EK, Nunn BL, Goodlett DR, Harvey HR. Identifying and tracking proteins through the marine water column: insights into the inputs and preservation mechanisms of protein in sediments. GEOCHIMICA ET COSMOCHIMICA ACTA 2012; 83:324-359. [PMID: 22711915 PMCID: PMC3375732 DOI: 10.1016/j.gca.2012.01.002] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Proteins generated during primary production represent an important fraction of marine organic nitrogen and carbon, and have the potential to provide organism-specific information in the environment. The Bering Sea is a highly productive system dominated by seasonal blooms and was used as a model system for algal proteins to be tracked through the water column and incorporated into detrital sedimentary material. Samples of suspended and sinking particles were collected at multiple depths along with surface sediments on the continental shelf and deeper basin of the Bering Sea. Modified standard proteomic preparations were used in conjunction with high pressure liquid chromatography-tandem mass spectrometry to identify the suite of proteins present and monitor changes in their distribution. In surface waters 207 proteins were identified, decreasing through the water column to 52 proteins identified in post-bloom shelf surface sediments and 24 proteins in deeper (3490 m) basin sediments. The vast majority of identified proteins in all samples were diatom in origin, reflecting their dominant contribution of biomass during the spring bloom. Identified proteins were predominantly from metabolic, binding/structural, and transport-related protein groups. Significant linear correlations were observed between the number of proteins identified and the concentration of total hydrolysable amino acids normalized to carbon and nitrogen. Organelle-bound, transmembrane, photosynthetic, and other proteins involved in light harvesting were preferentially retained during recycling. These findings suggest that organelle and membrane protection represent important mechanisms that enhance the preservation of protein during transport and incorporation into sediments.
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Affiliation(s)
- Eli K. Moore
- University of Maryland Center for Environmental Science, Chesapeake Biological Laboratory, Solomons, MD USA
| | - Brook L. Nunn
- Dept. of Medicinal Chemistry, University of Washington, Seattle, WA USA
| | - David R. Goodlett
- Dept. of Medicinal Chemistry, University of Washington, Seattle, WA USA
| | - H. Rodger Harvey
- University of Maryland Center for Environmental Science, Chesapeake Biological Laboratory, Solomons, MD USA
- Dept. of Ocean, Earth and Atmospheric Sciences, Old Dominion University, Norfolk, VA USA
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13
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Lepetit B, Goss R, Jakob T, Wilhelm C. Molecular dynamics of the diatom thylakoid membrane under different light conditions. PHOTOSYNTHESIS RESEARCH 2012; 111:245-57. [PMID: 21327535 DOI: 10.1007/s11120-011-9633-5] [Citation(s) in RCA: 85] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2010] [Accepted: 02/01/2011] [Indexed: 05/25/2023]
Abstract
During the last years significant progress was achieved in unraveling molecular characteristics of the thylakoid membrane of different diatoms. With the present review it is intended to summarize the current knowledge about the structural and functional changes within the thylakoid membrane of diatoms acclimated to different light conditions. This aspect is addressed on the level of the organization and regulation of light-harvesting proteins, the dissipation of excessively absorbed light energy by the process of non-photochemical quenching, and the lipid composition of diatom thylakoid membranes. Finally, a working hypothesis of the domain formation of the diatom thylakoid membrane is presented to highlight the most prominent differences of heterokontic thylakoids in comparison to vascular plants and green algae during the acclimation to low and high light conditions.
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Affiliation(s)
- Bernard Lepetit
- CNRS UMR6250 'LIENSs', Institute for Coastal and Environmental Research (ILE), University of La Rochelle, 2 rue Olympe de Gouges, 17042, La Rochelle cedex, France
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14
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Prihoda J, Tanaka A, de Paula WBM, Allen JF, Tirichine L, Bowler C. Chloroplast-mitochondria cross-talk in diatoms. JOURNAL OF EXPERIMENTAL BOTANY 2012; 63:1543-57. [PMID: 22268145 DOI: 10.1093/jxb/err441] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Diatoms are unicellular, mainly photosynthetic, eukaryotes living within elaborate silicified cell walls and believed to be responsible for around 40% of global primary productivity in the oceans. Their abundance in aquatic ecosystems is such that they have on different occasions been described as the insects, the weeds, or the cancer cells of the ocean. In contrast to higher plants and green algae which derive from a primary endosymbiosis, diatoms are now believed to originate from a serial secondary endosymbiosis involving both green and red algae and a heterotrophic exosymbiont host. As a consequence of their dynamic evolutionary history, they appear to have red algal-derived chloroplasts empowered largely by green algal proteins, working alongside mitochondria derived from the non-photosynthetic exosymbiont. This review will discuss the evidence for such an unusual assemblage of organelles in diatoms, and will present the evidence implying that it has enabled them with unorthodox metabolisms that may have contributed to their profound ecological success.
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Affiliation(s)
- Judit Prihoda
- Environmental and Evolutionary Genomics Section, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), CNRS UMR 8197 INSERM U1024, Ecole Normale Supérieure, Paris, 46 rue d'Ulm, 75230 Paris Cedex 05, France
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Evolution of light-harvesting complex proteins from Chl c-containing algae. BMC Evol Biol 2011; 11:101. [PMID: 21496217 PMCID: PMC3096602 DOI: 10.1186/1471-2148-11-101] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2010] [Accepted: 04/15/2011] [Indexed: 11/10/2022] Open
Abstract
Background Light harvesting complex (LHC) proteins function in photosynthesis by binding chlorophyll (Chl) and carotenoid molecules that absorb light and transfer the energy to the reaction center Chl of the photosystem. Most research has focused on LHCs of plants and chlorophytes that bind Chl a and b and extensive work on these proteins has uncovered a diversity of biochemical functions, expression patterns and amino acid sequences. We focus here on a less-studied family of LHCs that typically bind Chl a and c, and that are widely distributed in Chl c-containing and other algae. Previous phylogenetic analyses of these proteins suggested that individual algal lineages possess proteins from one or two subfamilies, and that most subfamilies are characteristic of a particular algal lineage, but genome-scale datasets had revealed that some species have multiple different forms of the gene. Such observations also suggested that there might have been an important influence of endosymbiosis in the evolution of LHCs. Results We reconstruct a phylogeny of LHCs from Chl c-containing algae and related lineages using data from recent sequencing projects to give ~10-fold larger taxon sampling than previous studies. The phylogeny indicates that individual taxa possess proteins from multiple LHC subfamilies and that several LHC subfamilies are found in distantly related algal lineages. This phylogenetic pattern implies functional differentiation of the gene families, a hypothesis that is consistent with data on gene expression, carotenoid binding and physical associations with other LHCs. In all probability LHCs have undergone a complex history of evolution of function, gene transfer, and lineage-specific diversification. Conclusion The analysis provides a strikingly different picture of LHC diversity than previous analyses of LHC evolution. Individual algal lineages possess proteins from multiple LHC subfamilies. Evolutionary relationships showed support for the hypothesized origin of Chl c plastids. This work also allows recent experimental findings about molecular function to be understood in a broader phylogenetic context.
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Lepetit B, Volke D, Gilbert M, Wilhelm C, Goss R. Evidence for the existence of one antenna-associated, lipid-dissolved and two protein-bound pools of diadinoxanthin cycle pigments in diatoms. PLANT PHYSIOLOGY 2010; 154:1905-20. [PMID: 20935178 PMCID: PMC2996015 DOI: 10.1104/pp.110.166454] [Citation(s) in RCA: 84] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2010] [Accepted: 10/07/2010] [Indexed: 05/18/2023]
Abstract
We studied the localization of diadinoxanthin cycle pigments in the diatoms Cyclotella meneghiniana and Phaeodactylum tricornutum. Isolation of pigment protein complexes revealed that the majority of high-light-synthesized diadinoxanthin and diatoxanthin is associated with the fucoxanthin chlorophyll protein (FCP) complexes. The characterization of intact cells, thylakoid membranes, and pigment protein complexes by absorption and low-temperature fluorescence spectroscopy showed that the FCPs contain certain amounts of protein-bound diadinoxanthin cycle pigments, which are not significantly different in high-light and low-light cultures. The largest part of high-light-formed diadinoxanthin cycle pigments, however, is not bound to antenna apoproteins but located in a lipid shield around the FCPs, which is copurified with the complexes. This lipid shield is primarily composed of the thylakoid membrane lipid monogalactosyldiacylglycerol. We also show that the photosystem I (PSI) fraction contains a tightly connected FCP complex that is enriched in protein-bound diadinoxanthin cycle pigments. The peripheral FCP and the FCP associated with PSI are composed of different apoproteins. Tandem mass spectrometry analysis revealed that the peripheral FCP is composed mainly of the light-harvesting complex protein Lhcf and also significant amounts of Lhcr. The PSI fraction, on the other hand, shows an enrichment of Lhcr proteins, which are thus responsible for the diadinoxanthin cycle pigment binding. The existence of lipid-dissolved and protein-bound diadinoxanthin cycle pigments in the peripheral antenna and in PSI is discussed with respect to different specific functions of the xanthophylls.
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Szabó M, Premvardhan L, Lepetit B, Goss R, Wilhelm C, Garab G. Functional heterogeneity of the fucoxanthins and fucoxanthin-chlorophyll proteins in diatom cells revealed by their electrochromic response and fluorescence and linear dichroism spectra. Chem Phys 2010. [DOI: 10.1016/j.chemphys.2010.03.001] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Identification of a specific fucoxanthin-chlorophyll protein in the light harvesting complex of photosystem I in the diatom Cyclotella meneghiniana. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2009; 1787:905-12. [DOI: 10.1016/j.bbabio.2009.04.006] [Citation(s) in RCA: 81] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2008] [Revised: 03/30/2009] [Accepted: 04/20/2009] [Indexed: 11/17/2022]
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KANAZAWA K, OZAKI Y, HASHIMOTO T, DAS SK, MATSUSHITA S, HIRANO M, OKADA T, KOMOTO A, MORI N, NAKATSUKA M. Commercial-scale Preparation of Biofunctional Fucoxanthin from Waste Parts of Brown Sea Algae Laminalia japonica. FOOD SCIENCE AND TECHNOLOGY RESEARCH 2008. [DOI: 10.3136/fstr.14.573] [Citation(s) in RCA: 82] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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Schlörmann W, John M, Steiniger F, Westermann M, Richter W. Improved antigen retrieval in freeze-fracture cytochemistry by evaporation of carbon as first replication layer. Histochem Cell Biol 2007; 127:633-9. [PMID: 17415584 DOI: 10.1007/s00418-007-0283-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/14/2007] [Indexed: 11/26/2022]
Abstract
The recently developed freeze-fracture replica immunolabeling technique uses sodium dodecyl sulfate to clean replicas obtained from chemically unfixed, rapidly frozen cells by evaporation of platinum as first and carbon as second replication layer. The detergent dissolves remains of cellular material with the exception of components which are in direct contact to the replica film. Membrane lipids and membrane protein complexes of the protoplasmic and the exoplasmic membrane halves remain attached to the replica film and are accessible for cytochemical localization. We immunolabeled the membrane proteins caveolin-1 and connexin 43 in mouse cell lines as well as the membrane attached protein tetrachloroethene reductive dehalogenase (PceA) in bacterial cells at freeze-fracture replicas generated by different evaporation parameters. The labeling experiments for caveolin-1 and the PceA showed that freeze-fracture replication of cellular membranes accomplished with thin platinum layers as well as replication with carbon as first evaporation layer lead in these cases to an improved antigen retrieval, whereas the labeling efficiency of connexin 43 was not affected by different evaporation conditions.
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Affiliation(s)
- Wiebke Schlörmann
- Elektronenmikroskopisches Zentrum, Klinikum der Friedrich-Schiller-Universität, Ziegelmühlenweg 1, D-07743, Jena, Germany
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Brakemann T, Schlörmann W, Marquardt J, Nolte M, Rhiel E. Association of Fucoxanthin Chlorophyll a/c-binding Polypeptides with Photosystems and Phosphorylation in the Centric Diatom Cyclotella cryptica. Protist 2006; 157:463-75. [PMID: 16904939 DOI: 10.1016/j.protis.2006.07.002] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2006] [Accepted: 07/02/2006] [Indexed: 10/24/2022]
Abstract
Solubilization of thylakoid membranes of Cyclotella cryptica with dodecyl-beta maltoside followed by sucrose density gradient centrifugation or deriphate polyacrylamide gel electrophoresis resulted in the isolation of pigment protein complexes. These complexes were characterized by absorption and fluorescence spectroscopy, sodium dodecyl sulfate polyacrylamide gel electrophoresis and Western immunoblotting using antisera against fucoxanthin chlorophyll a/c-binding proteins and the reaction center protein D2 of photosystem II. Sucrose density gradient centrifugation yielded four bands. Band 1 consisted of free pigments with minor amounts of fucoxanthin chlorophyll a/c-binding proteins. Bands 2, 3, and 4 represented a major fucoxanthin chlorophyll a/c-binding protein fraction, photosystem II, and photosystem I, respectively. Deriphate polyacrylamide gel electrophoresis gave rise to five bands, representing photosystem I, photosystem II, two fucoxanthin chlorophyll a/c-binding protein complexes, and a band mostly consisting of free pigments. In the Western immunoblotting experiments, the specific association of two fucoxanthin chlorophyll a/c-binding proteins, Fcp2 and Fcp4, to the photosystems could be demonstrated. In vivo experiments using antibodies against phosphothreonine residues and in vitro studies using [gamma-32P]ATP showed that fucoxanthin chlorophyll a/c binding-proteins of 22 kDa became phosphorylated.
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Affiliation(s)
- Tanja Brakemann
- Geomikrobiologie, ICBM, Carl-von-Ossietzky-Universität Oldenburg, POB. 2503, 26129 Oldenburg, Germany
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Wilhelm C, Büchel C, Fisahn J, Goss R, Jakob T, Laroche J, Lavaud J, Lohr M, Riebesell U, Stehfest K, Valentin K, Kroth PG. The regulation of carbon and nutrient assimilation in diatoms is significantly different from green algae. Protist 2006; 157:91-124. [PMID: 16621693 DOI: 10.1016/j.protis.2006.02.003] [Citation(s) in RCA: 147] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- Christian Wilhelm
- Department of Plant Physiology, Institute of Biology I, University of Leipzig, Johannisallee 23, 04103 Leipzig, Germany.
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