Ammonium inhibition through the decoupling of acidification process and methanogenesis in anaerobic digester revealed by high throughput sequencing

Methylotrophic methanogenesis induced by ammonia nitrogen in an anaerobic digestion system

OBJECTIVES

This lab-scale study aimed to investigate the effect of total ammonia nitrogen (TAN) stress on the methanogenic activity and the taxonomic and functional profiles of the microbial community of anaerobic sludge (AS) from a full-scale bioreactor.

METHODS

The AS was subjected to a stepwise increase in TAN every 14 days at concentrations of 1, 2, 2.5, 3, 3.5, and 4 g TAN/L (Acclimated-AS or AAS). This acclimation stage was followed by an ammonia stress stage (4 g/L). A blank-AS (BAS) was maintained without TAN during the acclimation stage. In the second stress stage (ST), the BAS was divided into two new treatments: a control (BAS') and one that received a shock load of TAN of 4 g/L (SBAS'). Methane production was measured, and a metagenomic analysis was conducted to describe the microbial community.

RESULTS

A decrease in the relative abundance of Methanothrix soehngenii of 16 % was related to a decrease of 23 % in the methanogenic capacity of AAS when comparing with the final stage of BAS. However, recovery was observed at 3.5 g TAN/L, and a shift to methylotrophic metabolism occurred, indicated by a 4-fold increase in abundance of Methanosarcina mazei. The functional analysis of sludge metagenomes indicated that no statistical differences (p > 0.05, RM ANOVA) were found in the relative abundance of methanogenic genes that initiate acetoclastic and hydrogenotrophic pathways (acetyl-CoA synthetase, ACSS; acetate kinase, ackA; phosphate acetyltransferase, pta; and formylmethanofuran dehydrogenase subunit A, fwdA) into the BAS and AAS during the acclimation phase. The same was observed between groups of genes associated with methanogenesis from methylated compounds. In contrast, statistical differences (p < 0.05, one-way ANOVA) in the relative abundance of these genes were recorded during ST. The functional profiles of the genes involved in acetoclastic, hydrogenotrophic, and methylotrophic methanogenic pathways were brought to light for acclimatation and stress experimental stages.

CONCLUSIONS

TAN inhibited methanogenic activity and acetoclastic metabolism. The gradual acclimatization to TAN leads to metabolic and taxonomic changes that allow for the subsequent recovery of methanogenic functionality. The study highlights the importance of adequate management of anaerobic bioprocesses with high nitrogen loads to maintain the methanogenic functionality of the microbial community.

Comparing the mechanisms of syntrophic volatile fatty acids oxidation and methanogenesis recovery from ammonia stress in regular and biochar-assisted anaerobic digestion: Different roads lead to the same goal

Biochar has been recognized as a promising additive to mitigate ammonia inhibition during syntrophic methanogenesis, while the key function of biochar in this process is still in debates. This study clarified the distinct mechanisms of syntrophic volatile fatty acids -oxidizing and methanogenesis recovery from ammonia inhibition in regular and biochar-assisted anaerobic digestion. Under 5 g/L ammonia stress, adding biochar shortened the methanogenic lag time by 10.9% and dramatically accelerated the maximum methane production rate from 60.3 to 94.7 mLCH4/gVSsludge/d. A photometric analysis with a nano-WO3 probe revealed that biochar enhanced the extracellular electron transfer (EET) capacity of suspended microbes (Pearson's r = -0.98), confirming that biochar facilitated methanogenesis by boosting EET between syntrophic butyrate oxidizer and methanogens. Same linear relationship between EET capacity and methanogenic rate was not observed in the control group. Microbial community integrating functional genes prediction analysis uncovered that biochar re-shaped syntrophic partners by enriching Constridium_sensu_stricto/Syntrophomonas and Methanosarcina. The functional genes encoding Co-enzyme F420 hydrogenase and formylmethanofuran dehydrogenase were upregulated by 1.4-2.3 times, consequently enhanced the CO2-reduction methanogenesis pathway. Meanwhile, the abundances of gene encoding methylene-tetrahydrofolate transformation, a series of intermediate processes involved in acetate oxidation, in the biochar-assisted group were 28.2-63.7% higher than these in control group. Comparatively, Methanosaeta played a pivotal role driving aceticlastic methanogenesis in the control group because the abundance of gene encoding acetyl-CoA decarbonylase/synthase complex increased by 1.9 times, suggesting an aceticlastic combining H2-based syntrophic methanogenesis pathway was established in control group to resist ammonia stress. A 2nd period experiment elucidated that although depending on distinct mechanisms, the volatile fatty acid oxidizers and methanogens in both groups developed sustained and stable strategies to resist ammonia stress. These findings provided new insights to understand the distinct methanogenic recovery strategy to resist toxic stress under varied environmental conditions.

Feasibility of anaerobic co-digestion of biodegradable plastics with food waste, investigation of microbial diversity and digestate phytotoxicity

The effects of biodegradable plastics of different thicknesses (30 and 40 μm) and sizes (20 × 20, 2 × 2, and 1 × 1 mm) on anaerobic digestion of food waste and digestate phytotoxicity were investigated. Methane productions (38 days) for the groups with 20 × 20, 2 × 2, and 1 × 1 mm of 30 μm plastics were 92.46, 138.27, and 259.95 mL/gVSremoval, respectively which are nearly 58 % higher than the control group (58.86 mL/gVSremoval). Methane production in 40 μm plastics groups was lower than in 30 μm groups of equal size. All sizes of 30 µm plastics promoted substrate hydrolysis, acidification, and relative abundance of key hydrolytic bacteria and methanogens. Phytotoxicity tests results showed that seed root elongation was inhibited in groups with 40 μm plastics. In conclusion, 30 μm biodegradable plastics were more suitable for anaerobic digestion with food waste than 40 μm.

Bioaugmentation potential of inoculum derived from anaerobic digestion feedstock for enhanced methane production using water hyacinth

The utilisation of water hyacinth for production of biogas is considered to be a solution to both its control and the global renewable energy challenge. In this instance, an investigation was conducted to evaluate the potential of water hyacinth inoculum to enhance methane production during anaerobic digestion (AD). Chopped whole water hyacinth (10% (w/v)) was digested to prepare an inoculum consisting mainly of water hyacinth indigenous microbes. The inoculum was incorporated in the AD of freshly chopped whole water hyacinth to set up different ratios of water hyacinth inoculum and water hyacinth mixture with appropriate controls. The results of batch tests with water hyacinth inoculum showed a maximal cumulative volume of 211.67 ml of methane after 29 days of AD as opposed to 88.6 ml of methane generated from the control treatment without inoculum. In addition to improving methane production, inclusion of water hyacinth inoculum reduced the electrical conductivity (EC) values of the resultant digestate, and, amplification of nifH and phoD genes in the digestate accentuates it as a potential soil ameliorant. This study provides an insight into the potential of water hyacinth inoculum to enhance methane production and contribute to the feasibility of the digestate as a soil fertility enhancer.

Effects of rumen undegradable protein sources on nitrous oxide, methane and ammonia emission from the manure of feedlot-finished cattle

The effects of sources of rumen undegradable protein (RUP) in diets on methane (CH₄), nitrous oxide (N₂O) and ammonia (NH₃) emissions from the manure of feedlot-finished cattle were evaluated. We hypothesized that the use of different RUP sources in diets would reduce N loss via urine and contribute to reduced N₂O, CH₄ and NH₃ emissions to the environment. Nellore cattle received different diets (18 animals/treatment), including soybean meal (SM, RDP source), by-pass soybean meal (BSM, RUP source) and corn gluten meal (CGM, RUP source). The protein source did not affect the N and C concentration in urine, C concentration in feces, and N balance (P > 0.05). The RUP sources resulted in a higher N₂O emission than the RDP source (P = 0.030), while BSM resulted in a higher N₂O emission than CGM (P = 0.038) (SM = 633, BSM = 2521, and CGM = 1153 g ha⁻² N–N₂O); however, there were no differences in CH₄ and NH₃ emission (P > 0.05). In conclusion, the use of RUP in diets did not affect N excretion of beef cattle or CH₄ and NH₃ emission from manure, but increased N₂O emission from the manure.

Similar Methanogenic Shift but Divergent Syntrophic Partners in Anaerobic Digesters Exposed to Direct versus Successive Ammonium Additions

During anaerobic digestion (AD) of protein-rich wastewater, ammonium (NH4+) is released by amino acid degradation. High NH4+ concentrations disturb the AD microbiome balance, leading to process impairments. The sensitivity of the AD microbiome to NH4+ and the inhibition threshold depend on multiple parameters, especially the previous microbial acclimation to ammonium stress. However, little is known about the effect of different NH4+ acclimation strategies on the differential expression of key active microbial taxa. Here, we applied NH4+ inputs of increasing intensity (from 1.7 to 15.2 g N-NH4+ liters-1) in batch assays fed with synthetic wastewater, according to two different strategies: (i) direct independent inputs at a unique target concentration and (ii) successive inputs in a stepwise manner. In both strategies, along the NH4+ gradient, the active methanogens shifted from acetoclastic Methanosaeta to Methanosarcina and eventually hydrogenotrophic Methanoculleus. Despite shorter latency times, the successive input modality led to lower methane production rate, lower soluble chemical oxygen demand (sCOD) removal efficiency, and lower half maximal inhibitory concentration, together with higher volatile fatty acid (VFA) accumulation, compared to the independent input modality. These differential performances were associated with a drastically distinct succession pattern of the active bacterial partners in both experiments. In particular, the direct exposure modality was characterized by a progressive enrichment of VFA producers (mainly Tepidimicrobium) and syntrophic VFA oxidizers (mainly Syntrophaceticus) with increasing NH4+ concentration, while the successive exposure modality was characterized by a more dynamic succession of VFA producers (mainly Clostridium, Sporanaerobacter, Terrisporobacter) and syntrophic VFA oxidizers (mainly Tepidanaerobacter, Syntrophomonas). These results bring relevant insights for improved process management through inoculum adaptation, bioaugmentation, or community-driven optimization. IMPORTANCE Anaerobic digestion (AD) is an attractive biotechnological process for wastewater bioremediation and bioenergy production in the form of methane-rich biogas. However, AD can be inhibited by ammonium generated by protein-rich effluent, commonly found in agro-industrial activities. Insights in the microbial community composition and identification of AD key players are crucial for anticipating process impairments in response to ammonium stress. They can also help in defining an optimal microbiome adapted to high ammonium levels. Here, we compared two strategies for acclimation of AD microbiome to increasing ammonium concentration to better understand the effect of this stress on the methanogens and their bacterial partners. Our results suggest that long-term cumulative exposure to ammonia disrupted the AD microbiome more strongly than direct (independent) ammonium additions. We identified bioindicators with different NH4+ tolerance capacity among VFA producers and syntrophic VFA oxidizers.

Impacts of different biochar types on the anaerobic digestion of sewage sludge

In this study, the effect of nine types of biochar generated from three different feedstocks on the anaerobic digestion (AD) of sewage sludge was investigated. The obtained results indicated that methane production could be significantly enhanced by all types of biochar used in the test. The maximum cumulative methane yield of 218.45 L per kg VS was obtained for the culture with corn straws pyrolyzed at 600 °C which also exhibited the largest specific surface area. Adding an appropriate amount of biochar was beneficial to improve the cumulative methane yield, while excessive addition could inhibit the AD process. Biochar could also enhance AD process stability by increasing buffering capacity, releasing volatile fatty acid accumulation and alleviating ammonia inhibition. Simultaneously, microbial community analysis revealed that biochar addition was able to improve the diversity of archaeal community and adjust the microbial communities. It was notable that biochar treatment facilitated the aceticlastic methanogens (Methanosarcina) compared to the hydrogenotrophic methanogens. Overall, biochar addition could be an ideal approach that is not only expected to successfully improve the performance of AD, but also lay a new path for future biomass energy utilization.

Modified anaerobic digestion model No.1 (ADM1) for modeling anaerobic digestion process at different ammonium concentrations

Anaerobic digestion (AD) is an established method for sustainable energy production. Anaerobic digestion model No.1 (ADM1) was used to simulate methane production (MP) and volatile fatty acid (VFA) concentrations at different ammonium concentrations. In accordance with the incomplete description of several biochemical reactions and the omission of several reaction processes, ADM1 was modified with the consideration of acetic acid inhibition and valeric acid existence. ADM1_ac (ADM1 added acetic acid inhibition) could obtain better simulation accuracy of MP (goodness-of-fit value = 0.945), and VFA concentrations (goodness-of-fit values > 0.39) were all higher than ADM1_original, but cannot explain the valeric acid production. ADM1_va (ADM1 added valeric acid existence) could achieve better simulation of valeric acid (achieving a breakthrough of zero), nevertheless the accuracy of propionic and butyric acids was poorer than ADM1_ac with differences between experimental and simulation values were 5%-10% lower. With both factors coordinated, MP and VFA concentrations could be simulated accurately by ADM1_ac_va (ADM1 added acetic acid inhibition and valeric acid existence), with the highest goodness-of-fit values (>0.85). The results of a verification experiment with ADM1_ac_va simulation further indicated that acetic acid inhibition and valeric acid as new component were both important in ADM1. PRACTITIONER POINTS: ADM1_ac could simulate MP and acetate, propionate and butyrate concentrations better. ADM1_va could explain the valerate production during AD of glucose. ADM1_ac_va could simulate AD process quite accurately, with the highest goodness-of-fit values (>0.85). Acetate inhibition and valerate existence were both important and should be considered in ADM1.

Performance of anaerobic treatment of blackwater collected from different toilet flushing systems: Can we achieve both energy recovery and water conservation?

Source-diverted blackwater (toilet wastewater) contains most of the organic energy in domestic wastewater and can be treated anaerobically to maximize energy recovery. Blackwater collected from toilets of different water saving options (e.g., conventional, dual and vacuum toilets) represents different characteristics, but their digestibility has not been discussed. In the present study, blackwater collected from different toilet flushing systems were characterized and compared in terms of chemical composition, digestibility and microbial population development during biochemical methane potential (BMP) tests. Interestingly, the highest BMP (48%) was achieved for conventional/dual flush toilet (5-9 L water/flush) blackwaters, whereas vacuum toilet (0.5-1.2 L water/flush) blackwater BMP was only 34%. Elevated free ammonia (FA) concentration (>205 mg L^-1) appeared to contribute to the reduced digestibility of high-water saving toilet (< 1.5 L water/flush) blackwaters. Methanogenesis was the major FA inhibition step in anaerobic digestion as evident by batch kinetics studies; where Methanosarcina methanogens predominate in all blackwater, but ammonia-tolerance methanogens Methanoculleus and Methanomicrobiales were also predominant in blackwater collected from vacuum toilets. This work underlines that overall measures of sustainability also need to consider blackwater characteristics when designing resource recovery based source-diverted sanitary treatment systems.

Ammonia determines transcriptional profile of microorganisms in anaerobic digestion

Anaerobic digestion is important for the management of livestock manure with high ammonia level. Although ammonia effects on anaerobic digestion have been comprehensively studied, the molecular mechanism underlying ammonia inhibition still remains elusive. In this study, based on metatranscriptomic analysis, the transcriptional profile of microbial community in anaerobic digestion under low (1500 mg L⁻¹) and high NH₄⁺ (5000 mg L⁻¹) concentrations, respectively, were revealed. The results showed that high NH₄⁺ concentrations significantly inhibited methane production but facilitated the accumulations of volatile fatty acids. The expression of methanogenic pathway was significantly inhibited by high NH₄⁺ concentration but most of the other pathways were not significantly affected. Furthermore, the expressions of methanogenic genes which encode acetyl-CoA decarbonylase and methyl-coenzyme M reductase were significantly inhibited by high NH₄⁺ concentration. The inhibition of the co-expressions of the genes which encode acetyl-CoA decarbonylase was observed. Some genes involved in the pathways of aminoacyl-tRNA biosynthesis and ribosome were highly expressed under high NH₄⁺ concentration. Consequently, the ammonia inhibition on anaerobic digestion mainly focused on methanogenic process by suppressing the expressions of genes which encode acetyl-CoA decarbonylase and methyl-coenzyme M reductase. This study improved the accuracy and depth of understanding ammonia inhibition on anaerobic digestion.