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Koptur S, Primoli AS, Valdes I, Nusrat M. Self-Incompatibility in Devil's Potato ( Echites umbellatus Jacq., Apocynaceae) May Explain Why Few Flowers Set Fruit. BIOLOGY 2024; 13:423. [PMID: 38927303 PMCID: PMC11200429 DOI: 10.3390/biology13060423] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Revised: 06/03/2024] [Accepted: 06/05/2024] [Indexed: 06/28/2024]
Abstract
Pollinators are needed for the reproduction of Echites umbellatus, and only sphingid moths have mouthparts long enough to reach the nectar at the bottom of the species' long, twisted floral tube. Though plants produce many flowers over a period of several months, one observes very few fruits in nature. We asked: (1) Are plants self-compatible, or do they need pollen from another individual to set fruit and seed? (2) Are cross-pollinations between unrelated individuals more successful than crosses with relatives? (3) How does the relatedness of pollen and ovule parent plants affect fruit set, seed number, and seed quality? We investigated the breeding system of E. umbellatus by collecting fruits from seven sites, growing plants and performing hand pollinations over a period of several years, collecting and measuring fruits and counting seeds. Echites umbellatus is self-incompatible, though some individuals produce fruit by self-pollination. Cross-pollinations between unrelated individuals set the most fruit (59%), and those that were self-pollinated set the least (9%). Fruit set from cross-pollinations between related individuals was intermediate (32%). Although the number of seeds per fruit did not differ significantly among pollination treatments, fruits from self-pollinations had substantially fewer viable seeds than outcrossed fruits, with fruits from sibling crosses being intermediate. There were higher levels of self-compatibility in the fragment populations compared with plants from intact habitats. Self-incompatibility may explain why fruit set is low in this plant species; future investigation into the breakdown of self-incompatibility in smaller populations is warranted.
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Affiliation(s)
- Suzanne Koptur
- Department of Biological Sciences, International Center for Tropical Botany, Institute of the Environment, Florida International University, Miami, FL 33199, USA; (A.S.P.); (I.V.); (M.N.)
| | - Andrea Salas Primoli
- Department of Biological Sciences, International Center for Tropical Botany, Institute of the Environment, Florida International University, Miami, FL 33199, USA; (A.S.P.); (I.V.); (M.N.)
| | - Imeña Valdes
- Department of Biological Sciences, International Center for Tropical Botany, Institute of the Environment, Florida International University, Miami, FL 33199, USA; (A.S.P.); (I.V.); (M.N.)
- Program in Plant Biology and Conservation, Northwestern University, 2145 Sheridan Road, Tech F315633, Evanston, IL 60208, USA
| | - Maha Nusrat
- Department of Biological Sciences, International Center for Tropical Botany, Institute of the Environment, Florida International University, Miami, FL 33199, USA; (A.S.P.); (I.V.); (M.N.)
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Lewis R, Pointer MD, Friend L, Gage MJG, Spurgin LG. Tests of evolutionary and genetic rescue using flour beetles, Tribolium castaneum, experimentally evolved to thermal conditions. Ecol Evol 2024; 14:e11313. [PMID: 38694756 PMCID: PMC11056960 DOI: 10.1002/ece3.11313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 03/26/2024] [Accepted: 04/03/2024] [Indexed: 05/04/2024] Open
Abstract
Small, isolated populations are often characterised by low levels of genetic diversity. This can result in inbreeding depression and reduced capacity to adapt to changes in the environment, and therefore higher risk of extinction. However, sometimes these populations can be rescued if allowed to increase in size or if migrants enter, bringing in new allelic variation and thus increasing genetic diversity. This study uses experimental manipulation of population size and migration to quantify their effects on fitness in a challenging environment to better understand genetic rescue. Using small, replicated populations of Tribolium castaneum experimentally evolved to different temperature regimes we tested genetic and demographic rescue, by performing large-scale manipulations of population size and migration and examining fitness consequences over multiple generations. We measured fitness in high temperature (38°C) thermal lines maintained at their usual 'small' population size of N = 100 individuals, and with 'large' scaled up duplicates containing N≈10,000 individuals. We compared these large lines with and without migration (m = 0.1) for 10 generations. Additionally, we assessed the effects of outcrossing at an individual level, by comparing fitness of hybrid (thermal line × stock) offspring with within-line crosses. We found that, at the population level, a rapid increase in the number of individuals in the population resulted in reduced fitness (represented by reproductive output and survival through heatwave conditions), regardless of migration. However, at an individual level, the hybrid offspring of migrants with native individuals generally demonstrated increased longevity in high temperature conditions compared with individuals from thermal selection lines. Overall, these populations showed no evidence that demographic manipulations led to genetic or evolutionary rescue. Following the effects of migration in individuals over several generations may be the next step in unravelling these conflicting results. We discuss these findings in the context of conservation intervention.
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Affiliation(s)
- Rebecca Lewis
- School of Biological SciencesUniversity of East AngliaNorwichUK
| | | | - Lucy Friend
- School of Biological SciencesUniversity of East AngliaNorwichUK
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Mora‐Carrera E, Stubbs RL, Potente G, Yousefi N, Keller B, de Vos JM, Szövényi P, Conti E. Genomic analyses elucidate S-locus evolution in response to intra-specific losses of distyly in Primula vulgaris. Ecol Evol 2024; 14:e10940. [PMID: 38516570 PMCID: PMC10955462 DOI: 10.1002/ece3.10940] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 12/02/2023] [Accepted: 01/03/2024] [Indexed: 03/23/2024] Open
Abstract
Distyly, a floral dimorphism that promotes outcrossing, is controlled by a hemizygous genomic region known as the S-locus. Disruptions of genes within the S-locus are responsible for the loss of distyly and the emergence of homostyly, a floral monomorphism that favors selfing. Using whole-genome resequencing data of distylous and homostylous individuals from populations of Primula vulgaris and leveraging high-quality reference genomes of Primula we tested, for the first time, predictions about the evolutionary consequences of transitions to selfing on S-genes. Our results reveal a previously undetected structural rearrangement in CYPᵀ associated with the shift to homostyly and confirm previously reported, homostyle-specific, loss-of-function mutations in the exons of the S-gene CYPᵀ. We also discovered that the promoter and intronic regions of CYPᵀ in distylous and homostylous individuals are conserved, suggesting that down-regulation of CYPᵀ via mutations in its promoter and intronic regions is not a cause of the shift to homostyly. Furthermore, we found that hemizygosity is associated with reduced genetic diversity in S-genes compared with their paralogs outside the S-locus. Additionally, the shift to homostyly lowers genetic diversity in both the S-genes and their paralogs, as expected in primarily selfing plants. Finally, we tested, for the first time, long-standing theoretical models of changes in S-locus genotypes during early stages of the transition to homostyly, supporting the assumption that two copies of the S-locus might reduce homostyle fitness.
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Affiliation(s)
- E. Mora‐Carrera
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - R. L. Stubbs
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - G. Potente
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - N. Yousefi
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - B. Keller
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - J. M. de Vos
- Department of Environmental Sciences – BotanyUniversity of BaselBaselSwitzerland
| | - P. Szövényi
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - E. Conti
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
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Soto TY, Rojas-Gutierrez JD, Oakley CG. Can heterosis and inbreeding depression explain the maintenance of outcrossing in a cleistogamous perennial? AMERICAN JOURNAL OF BOTANY 2023; 110:e16240. [PMID: 37672596 DOI: 10.1002/ajb2.16240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 08/17/2023] [Accepted: 08/18/2023] [Indexed: 09/08/2023]
Abstract
PREMISE What maintains mixed mating is an evolutionary enigma. Cleistogamy-the production of both potentially outcrossing chasmogamous and obligately selfing cleistogamous flowers on the same individual plant-is an excellent system to study the costs of selfing. Inbreeding depression can prevent the evolution of greater selfing within populations, and heterosis in crosses between populations may further tip the balance in favor of outcrossing. Few empirical estimates of inbreeding depression and heterosis in the same system exist for cleistogamous species. METHODS We investigate the potential costs of selfing by quantifying inbreeding depression and heterosis in three populations of the cleistogamous perennial Ruellia humilis Nutt (Acanthaceae). We performed three types of hand-pollinations-self, outcross-within, and outcross-between populations-and measured seed number, germination, total flower production, and estimated cumulative fitness for the resulting progeny in a greenhouse experiment. RESULTS We found moderate inbreeding depression for cumulative fitness (<30%) in two populations, but outbreeding depression for crosses within a third population (-26%). For between-population crosses, there was weak to modest heterosis (11-47%) in two of the population combinations, but modest to strong outbreeding depression (-21 to -71%) in the other four combinations. CONCLUSIONS Neither inbreeding depression nor heterosis was of sufficient magnitude to explain the continued production of chasmogamous flowers given the relative energetic advantage of cleistogamous flowers previously estimated for these populations. Outbreeding depression either within or between populations makes the maintenance of chasmogamous flowers even harder to explain. More information is needed on the genetic basis of cleistogamy to resolve this conundrum.
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Affiliation(s)
- Tatyana Y Soto
- Department of Botany and Plant Pathology and the Center for Plant Biology, Purdue University, West Lafayette, IN, USA
| | - Juan Diego Rojas-Gutierrez
- Department of Botany and Plant Pathology and the Center for Plant Biology, Purdue University, West Lafayette, IN, USA
| | - Christopher G Oakley
- Department of Botany and Plant Pathology and the Center for Plant Biology, Purdue University, West Lafayette, IN, USA
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Jia Y, Liu C, Li Y, Xiang Y, Pan Y, Liu Q, Gao S, Yin X, Wang Z. Inheritance of distyly and homostyly in self-incompatible Primula forbesii. Heredity (Edinb) 2023; 130:259-268. [PMID: 36788365 PMCID: PMC10076296 DOI: 10.1038/s41437-023-00598-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Revised: 02/02/2023] [Accepted: 02/02/2023] [Indexed: 02/16/2023] Open
Abstract
The evolutionary transition from self-incompatible distyly to self-compatible homostyly frequently occurs in heterostylous taxa. Although the inheritance of distyly and homostyly has been deeply studied, our understanding on modifications of the classical simple Mendelian model is still lacking. Primula forbesii, a biennial herb native to southwest China, is a typical distylous species, but after about 20 years of cultivation with open pollination, self-compatible homostyly appeared, providing ideal material for the study of the inheritance of distyly and homostyly. In this study, exogenous homobrassinolide was used to break the heteromorphic incompatibility of P. forbesii. Furthermore, we performed artificial pollination and open-pollination experiments to observe the distribution of floral morphs in progeny produced by different crosses. The viability of seeds from self-pollination was always the lowest among all crosses, and the homozygous S-morph plants (S/S) occurred in artificial pollination experiments but may experience viability selection. The distyly of P. forbesii is governed by a single S-locus, with S-morph dominant hemizygotes (S/-) and L-morph recessive homozygotes (-/-). Homostylous plants have a genotype similar to L-morph plants, and homostyly may be caused by one or more unlinked modifier genes outside the S-locus. Open pollinations confirm that autonomous self-pollination occurs frequently in L-morphs and homostylous plants. This study deepens the understanding of the inheritance of distyly and details a case of homostyly that likely originated from one or more modifier genes.
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Affiliation(s)
- Yin Jia
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China.
| | - Cailei Liu
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Yifeng Li
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Yuanfen Xiang
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Yuanzhi Pan
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Qinglin Liu
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Suping Gao
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Xiancai Yin
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
| | - Zexun Wang
- College of Landscape Architecture, Sichuan Agricultural University, Chengdu, China
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Mora‐Carrera E, Stubbs RL, Keller B, Léveillé‐Bourret É, de Vos JM, Szövényi P, Conti E. Different molecular changes underlie the same phenotypic transition: Origins and consequences of independent shifts to homostyly within species. Mol Ecol 2023; 32:61-78. [PMID: 34761469 PMCID: PMC10078681 DOI: 10.1111/mec.16270] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Revised: 10/29/2021] [Accepted: 11/02/2021] [Indexed: 12/29/2022]
Abstract
The repeated transition from outcrossing to selfing is a key topic in evolutionary biology. However, the molecular basis of such shifts has been rarely examined due to lack of knowledge of the genes controlling these transitions. A classic example of mating system transition is the repeated shift from heterostyly to homostyly. Occurring in 28 angiosperm families, heterostyly is characterized by the reciprocal position of male and female sexual organs in two (or three) distinct, usually self-incompatible floral morphs. Conversely, homostyly is characterized by a single, self-compatible floral morph with reduced separation of male and female organs, facilitating selfing. Here, we investigate the origins of homostyly in Primula vulgaris and its microevolutionary consequences by integrating surveys of the frequency of homostyles in natural populations, DNA sequence analyses of the gene controlling the position of female sexual organs (CYPᵀ), and microsatellite genotyping of both progeny arrays and natural populations characterized by varying frequencies of homostyles. As expected, we found that homostyles displace short-styled individuals, but long-style morphs are maintained at low frequencies within populations. We also demonstrated that homostyles repeatedly evolved from short-styled individuals in association with different types of loss-of-function mutations in CYPᵀ. Additionally, homostyly triggers a shift to selfing, promoting increased inbreeding within and genetic differentiation among populations. Our results elucidate the causes and consequences of repeated transitions to homostyly within species, and the putative mechanisms precluding its fixation in P. vulgaris. This study represents a benchmark for future analyses of losses of heterostyly in other angiosperms.
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Affiliation(s)
- Emiliano Mora‐Carrera
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - Rebecca L. Stubbs
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - Barbara Keller
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - Étienne Léveillé‐Bourret
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
- Département de Sciences BiologiquesInstitut de Recherche en Biologie VégétaleUniversité de MontréalMontréalQuébecCanada
| | - Jurriaan M. de Vos
- Department of Environmental Sciences – BotanyUniversity of BaselBaselSwitzerland
| | - Peter Szövényi
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
| | - Elena Conti
- Department of Systematic and Evolutionary BotanyUniversity of ZurichZurichSwitzerland
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Sidhu CS, Lozano GE, Miner MC, Howe E, Wilson-Rankin EE. Pollination Ecology of Island Endemic Plants: A Case Study on the California Channel Islands. WEST N AM NATURALIST 2022. [DOI: 10.3398/064.082.0401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- C. Sheena Sidhu
- Department of Entomology, University of California Riverside, Riverside, CA 92521
| | - Giselle E. Lozano
- Department of Entomology, University of California Riverside, Riverside, CA 92521
| | - Michelle C. Miner
- Department of Entomology, University of California Riverside, Riverside, CA 92521
| | - Emily Howe
- Soil Ecology and Restoration Group, San Diego State University Research Foundation, San Diego, CA 92182
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Liu C, Jia Y, Li Y, Xiang Y, Pan Y, Liu Q, Ma K, Yin X. The rapid appearance of homostyly in a cultivated distylous population of
Primula forbesii. Ecol Evol 2022; 12:e9515. [PMID: 36415874 PMCID: PMC9674475 DOI: 10.1002/ece3.9515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2022] [Revised: 10/22/2022] [Accepted: 10/26/2022] [Indexed: 11/20/2022] Open
Abstract
Evolutionary breakdown from rigorous outbreeding to self‐fertilization frequently occurs in angiosperms. Since the pollinators are not necessary, self‐compatible populations often reduce investment in floral display characteristics and pollination reward. Primula forbesii is a biennial herb with distribution restricted to southwest China; it was initially a self‐incompatible distylous species, but after 20 years of artificial domestication, homostyly appeared. This change in style provides an ideal material to explore the time required for plant mating systems to adapt to new environmental changes and test whether flower attraction has reduced following transitions to selfing. We did a survey in wild populations of P. forbesii where its seeds were originally collected 20 years ago and recorded the floral morph frequencies and morphologies. The floral morphologies, self‐incompatibility, floral scent, and pollinator visitation between distyly and homostyly were compared in greenhouse. Floral morph frequencies of wild populations did not change, while the cultivated population was inclined to L‐morph and produced homostyly. Evidence from stigma papillae and pollen size supports the hypothesis that the homostyly possibly originated from mutations of large effect genes in distylous linkage region. Transitions to self‐compatible homostyly are accompanied by smaller corolla size, lower amounts of terpenoids, especially linalool and higher amounts of fatty acid derivatives. The main pollinators in the greenhouse were short‐tongued Apis cerana. However, homostyly had reduced visiting frequency. The mating system of P. forbesii changed rapidly in just about 20 years of domestication, and our findings confirm the hypothesis that the transition to selfing is accompanied by decreased flower attraction.
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Affiliation(s)
- Cai‐Lei Liu
- College of Landscape Architecture Sichuan Agricultural University Chengdu China
| | - Yin Jia
- College of Landscape Architecture Sichuan Agricultural University Chengdu China
| | - Yi‐Feng Li
- College of Landscape Architecture Sichuan Agricultural University Chengdu China
| | - Yuan‐Fen Xiang
- College of Landscape Architecture Sichuan Agricultural University Chengdu China
| | - Yuan‐Zhi Pan
- College of Landscape Architecture Sichuan Agricultural University Chengdu China
| | - Qing‐Lin Liu
- College of Landscape Architecture Sichuan Agricultural University Chengdu China
| | - Ke‐Hang Ma
- College of Landscape Architecture Sichuan Agricultural University Chengdu China
| | - Xian‐Cai Yin
- College of Landscape Architecture Sichuan Agricultural University Chengdu China
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Rosche C, Baasch A, Runge K, Brade P, Träger S, Parisod C, Hensen I. Tracking population genetic signatures of local extinction with herbarium specimens. ANNALS OF BOTANY 2022; 129:857-868. [PMID: 35670810 PMCID: PMC9292615 DOI: 10.1093/aob/mcac061] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2022] [Indexed: 05/29/2023]
Abstract
BACKGROUND AND AIMS Habitat degradation and landscape fragmentation dramatically lower population sizes of rare plant species. Decreasing population sizes may, in turn, negatively affect genetic diversity and reproductive fitness, which can ultimately lead to local extinction of populations. Although such extinction vortex dynamics have been postulated in theory and modelling for decades, empirical evidence from local extinctions of plant populations is scarce. In particular, comparisons between current vs. historical genetic diversity and differentiation are lacking despite their potential to guide conservation management. METHODS We studied the population genetic signatures of the local extinction of Biscutella laevigata subsp. gracilis populations in Central Germany. We used microsatellites to genotype individuals from 15 current populations, one ex situ population, and 81 herbarium samples from five extant and 22 extinct populations. In the current populations, we recorded population size and fitness proxies, collected seeds for a germination trial and conducted a vegetation survey. The latter served as a surrogate for habitat conditions to study how habitat dissimilarity affects functional connectivity among the current populations. KEY RESULTS Bayesian clustering revealed similar gene pool distribution in current and historical samples but also indicated that a distinct genetic cluster was significantly associated with extinction probability. Gene flow was affected by both the spatial distance and floristic composition of population sites, highlighting the potential of floristic composition as a powerful predictor of functional connectivity which may promote decision-making for reintroduction measures. For an extinct population, we found a negative relationship between sampling year and heterozygosity. Inbreeding negatively affected germination. CONCLUSIONS Our study illustrates the usefulness of historical DNA to study extinction vortices in threatened species. Our novel combination of classical population genetics together with data from herbarium specimens, an ex situ population and a germination trial underlines the need for genetic rescue measures to prevent extinction of B. laevigata in Central Germany.
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Affiliation(s)
| | | | - Karen Runge
- Anhalt University of Applied Sciences, Department of Agriculture, Ecotrophology and Landscape Development, Strenzfelder Allee 28, 06406 Bernburg (Saale), Germany
| | - Philipp Brade
- Anhalt University of Applied Sciences, Department of Agriculture, Ecotrophology and Landscape Development, Strenzfelder Allee 28, 06406 Bernburg (Saale), Germany
| | - Sabrina Träger
- Martin Luther University Halle-Wittenberg, Institute of Biology/Geobotany and Botanical Garden, Große Steinstraße 79/80, 06108 Halle (Saale), Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103 Leipzig, Germany
| | - Christian Parisod
- University of Fribourg, Department of Biology, Chemin du Musée 10, 1700 Fribourg, Switzerland
| | - Isabell Hensen
- Martin Luther University Halle-Wittenberg, Institute of Biology/Geobotany and Botanical Garden, Große Steinstraße 79/80, 06108 Halle (Saale), Germany
- German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Puschstraße 4, 04103 Leipzig, Germany
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Van Rossum F, Le Pajolec S, Raspé O, Godé C. Assessing Population Genetic Status for Designing Plant Translocations. FRONTIERS IN CONSERVATION SCIENCE 2022. [DOI: 10.3389/fcosc.2022.829332] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Assisted gene flow interventions such as plant translocations are valuable complementary techniques to habitat restoration. Bringing new genetic variants can contribute to increasing genetic diversity and evolutionary resilience, counteract inbreeding depression and improve plant fitness through heterosis. Large, highly genetically variable populations are usually recommended as sources for translocation. Unfortunately, many critically endangered species only occur as small populations, which are expected to show low genetic variation, high inbreeding level, paucity of compatible mates in self-incompatible species, and increased genetic divergence. Therefore, assessment of population genetic status is required for an appropriate choice of the source populations. In this paper, we exemplify the different analyses relevant for genetic evaluation of populations combining both molecular (plastid and nuclear) markers and fitness-related quantitative traits. We assessed the genetic status of the adult generation and their seed progeny (the potential translocation founders) of small populations of Campanula glomerata (Campanulaceae), a self-incompatible insect-pollinated herbaceous species critically endangered in Belgium. Only a few small populations remain, so that the species has been part of a restoration project of calcareous grasslands implementing plant translocations. In particular, we estimated genetic diversity, inbreeding levels, genetic structure in adults and their seed progeny, recent bottlenecks, clonal extent in adults, contemporary gene flow, effective population size (Ne), and parentage, sibship and seed progeny fitness variation. Small populations of C. glomerata presented high genetic diversity, and extensive contemporary pollen flow within populations, with multiple parentage among seed progenies, and so could be good seed source candidates for translocations. As populations are differentiated from each other, mixing the sources will not only optimize the number of variants and of compatible mates in translocated populations, but also representativeness of species regional genetic diversity. Genetic diversity is no immediate threat to population persistence, but small Ne, restricted among-population gene flow, and evidence of processes leading to genetic erosion, inbreeding and inbreeding depression in the seed progeny require management measures to counteract these trends and stochastic vulnerability. Habitat restoration facilitating recruitment, flowering and pollination, reconnecting populations by biological corridors or stepping stones, and creating new populations through translocations in protected areas are particularly recommended.
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Van Rossum F, Hardy OJ. Guidelines for genetic monitoring of translocated plant populations. CONSERVATION BIOLOGY : THE JOURNAL OF THE SOCIETY FOR CONSERVATION BIOLOGY 2022; 36:e13670. [PMID: 33236806 DOI: 10.1111/cobi.13670] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Revised: 11/05/2020] [Accepted: 11/18/2020] [Indexed: 06/11/2023]
Abstract
Plant translocation is a useful tool for implementing assisted gene flow in recovery plans of critically endangered plant species. Although it helps to restore genetically viable populations, it is not devoid of genetic risks, such as poor adaptation of transplants and outbreeding depression in the hybrid progeny, which may have negative consequences in terms of demographic growth and plant fitness. Hence, a follow-up genetic monitoring should evaluate whether the translocated populations are genetically viable and self-sustaining in the short and long term. The causes of failure to adjust management responses also need to be identified. Molecular markers and fitness-related quantitative traits can be used to determine whether a plant translocation enhanced genetic diversity, increased fitness, and improved the probability of long-term survival. We devised guidelines and illustrated them with studies from the literature to help practitioners determine the appropriate genetic survey methods so that management practices can better integrate evolutionary processes. These guidelines include methods for sampling and for assessing changes in genetic diversity and differentiation, contemporary gene flow, mode of local recruitment, admixture level, the effects of genetic rescue, inbreeding or outbreeding depression and local adaptation on plant fitness, and long-term genetic changes.
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Affiliation(s)
- Fabienne Van Rossum
- Meise Botanic Garden, Nieuwelaan 38, Meise, 1860, Belgium
- Service général de l'Enseignement supérieur et de la Recherche scientifique, Fédération Wallonie-Bruxelles, rue A. Lavallée 1, Brussels, 1080, Belgium
| | - Olivier J Hardy
- Unit of Evolutionary Biology and Ecology, Université Libre de Bruxelles, Avenue F.D. Roosevelt 50, CP 160/12, Brussels, 1050, Belgium
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Chen Z, Grossfurthner L, Loxterman JL, Masingale J, Richardson BA, Seaborn T, Smith B, Waits LP, Narum SR. Applying genomics in assisted migration under climate change: Framework, empirical applications, and case studies. Evol Appl 2022; 15:3-21. [PMID: 35126645 PMCID: PMC8792483 DOI: 10.1111/eva.13335] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2021] [Revised: 11/18/2021] [Accepted: 12/01/2021] [Indexed: 12/01/2022] Open
Abstract
The rate of global climate change is projected to outpace the ability of many natural populations and species to adapt. Assisted migration (AM), which is defined as the managed movement of climate-adapted individuals within or outside the species ranges, is a conservation option to improve species' adaptive capacity and facilitate persistence. Although conservation biologists have long been using genetic tools to increase or maintain diversity of natural populations, genomic techniques could add extra benefit in AM that include selectively neutral and adaptive regions of the genome. In this review, we first propose a framework along with detailed procedures to aid collaboration among scientists, agencies, and local and regional managers during the decision-making process of genomics-guided AM. We then summarize the genomic approaches for applying AM, followed by a literature search of existing incorporation of genomics in AM across taxa. Our literature search initially identified 729 publications, but after filtering returned only 50 empirical studies that were either directly applied or considered genomics in AM related to climate change across taxa of plants, terrestrial animals, and aquatic animals; 42 studies were in plants. This demonstrated limited application of genomic methods in AM in organisms other than plants, so we provide further case studies as two examples to demonstrate the negative impact of climate change on non-model species and how genomics could be applied in AM. With the rapidly developing sequencing technology and accumulating genomic data, we expect to see more successful applications of genomics in AM, and more broadly, in the conservation of biodiversity.
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Affiliation(s)
- Zhongqi Chen
- Aquaculture Research InstituteUniversity of IdahoHagermanIdahoUSA
| | - Lukas Grossfurthner
- Bioinformatics and Computational Biology Graduate ProgramUniversity of IdahoHagermanIdahoUSA
| | - Janet L. Loxterman
- Department of Biological SciencesIdaho State UniversityPocatelloIdahoUSA
| | | | | | - Travis Seaborn
- Department of Fish and Wildlife ResourcesUniversity of IdahoMoscowIdahoUSA
| | - Brandy Smith
- Department of Biological SciencesIdaho State UniversityPocatelloIdahoUSA
| | - Lisette P. Waits
- Department of Fish and Wildlife ResourcesUniversity of IdahoMoscowIdahoUSA
| | - Shawn R. Narum
- Columbia River Inter‐Tribal Fish CommissionHagermanIdahoUSA
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Yu YL, Wang HC, Yu ZX, Schinnerl J, Tang R, Geng YP, Chen G. Genetic diversity and structure of the endemic and endangered species Aristolochia delavayi growing along the Jinsha River. PLANT DIVERSITY 2021; 43:225-233. [PMID: 34195507 PMCID: PMC8233524 DOI: 10.1016/j.pld.2020.12.007] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2020] [Revised: 12/12/2020] [Accepted: 12/17/2020] [Indexed: 06/13/2023]
Abstract
The traditional medicinal plant, and endangered species Aristolochia delavayi (Aristolochiaceae) is an endemic species in China and occurs in the warm and dry areas along the Jinsha river. It is also a specific host of the larvae of Byasa daemonius, a vulnerable butterfly. In this study, 15 pairs of polymorphic microsatellite primers of A. delavayi were designed and screened based on the Simple Sequence Repeats (SSR) loci found by using the results of genome skimming. Based on these 15 SSR markers, the genetic diversity and structure of 193 individuals from ten natural populations were analyzed in detail. In comparison to other endemic and endangered plants in the region, the population of A. delavayi possess a relatively high genetic diversity (He = 0.550, I = 1.112). AMOVA analysis showed that 68.4% of the total genetic diversity was within populations and 31.6% of the variation occurred among populations. There was a significant genetic differentiation among natural populations of A. delavayi detectable, with low gene flow (Nm = 0.591). This might be attributed to geographical barriers and limited seed dispersal. To test the isolation by distance (IBD), we performed Mantel test, which showed a significant correlation between the geographic and genetic distances. In order to cope with the possible biases caused by IBD, we additionally performed Bayesian genetic cluster analyses and principal coordinate analysis (PCoA). The final cluster analysis revealed three groups with distinct geographical distribution. Habitat fragmentation and limited gene flow between these populations may be the main reasons for the current genetic structure. For conservation of this species, we suggest to divide its populations into three protection management units, with subsequent focus on the Yongsheng and Luquan populations which experienced a genetic bottleneck event in the past.
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Affiliation(s)
- Yu-Long Yu
- School of Ecology and Environmental Science, Yunnan University, Kunming, 650091, China
- Yunnan Key Laboratory for Integrative Conservation of Plant Species with Extremely Small Populations, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
| | - Hui-Chun Wang
- Yunnan Key Laboratory for Integrative Conservation of Plant Species with Extremely Small Populations, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Zhi-Xiang Yu
- Sichuan Panzhihua Cycas National Nature Reserver Bureau, Panzhihua, 617000, China
| | - Johann Schinnerl
- Department of Botany and Biodiversity Research, University of Vienna, Rennweg 14, A-1030, Vienna, Austria
| | - Rong Tang
- Yunnan Key Laboratory for Integrative Conservation of Plant Species with Extremely Small Populations, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yu-Peng Geng
- School of Ecology and Environmental Science, Yunnan University, Kunming, 650091, China
| | - Gao Chen
- Yunnan Key Laboratory for Integrative Conservation of Plant Species with Extremely Small Populations, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
- CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China
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14
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Hoffmann L, Hull KL, Bierman A, Badenhorst R, Bester-van der Merwe AE, Rhode C. Patterns of Genetic Diversity and Mating Systems in a Mass-Reared Black Soldier Fly Colony. INSECTS 2021; 12:insects12060480. [PMID: 34064077 PMCID: PMC8224309 DOI: 10.3390/insects12060480] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 05/14/2021] [Accepted: 05/18/2021] [Indexed: 12/27/2022]
Abstract
The black soldier fly (BSF), Hermetia illucens, is a promising candidate for the emerging insect farming industry with favourable characteristics for both bioremediation and production of animal delivered nutritive and industrial compounds. The genetic management of commercial colonies will become increasingly important for the sustainability of the industry. However, r-selected life history traits of insects pose challenges to conventional animal husbandry and breeding approaches. In this study, the long-term genetic effects of mass-rearing were evaluated as well as mating systems in the species to establish factors that might influence genetic diversity, and by implication fitness and productivity in commercial colonies. Population genetic parameters, based on microsatellite markers, were estimated and compared amongst two temporal wild sampling populations and four generations (F28, F48, F52, and F62) of a mass-reared colony. Furthermore, genetic relationships amongst mate pairs were evaluated and parentage analysis was performed to determine the oc-currence of preferential mate choice and multiple paternity. The mass-reared colony showed a reduction in genetic diversity and evidence for inbreeding with significant successive generational genetic differentiation from the wild progenitor population. Population-level analysis also gave the first tentative evidence of positive assortative mating and genetic polyandry in BSF. The homoge-neity of the mass-reared colony seems to result from a dual action caused by small effective popu-lation size and increased homozygosity due to positive assortative mating. However, the high ge-netic diversity in the wild and a polyandrous mating system might suggest the possible restoration of diversity in mass-reared colonies through augmentation with the wild population.
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Affiliation(s)
- Lelanie Hoffmann
- Department of Genetics, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa; (L.H.); (K.L.H.); (A.E.B.-v.d.M.)
| | - Kelvin L. Hull
- Department of Genetics, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa; (L.H.); (K.L.H.); (A.E.B.-v.d.M.)
| | - Anandi Bierman
- Insect Technology Group Holdings UK Ltd., 1 Farnham Road, Guildford GU2 4RG, UK; (A.B.); (R.B.)
| | - Rozane Badenhorst
- Insect Technology Group Holdings UK Ltd., 1 Farnham Road, Guildford GU2 4RG, UK; (A.B.); (R.B.)
| | - Aletta E. Bester-van der Merwe
- Department of Genetics, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa; (L.H.); (K.L.H.); (A.E.B.-v.d.M.)
| | - Clint Rhode
- Department of Genetics, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa; (L.H.); (K.L.H.); (A.E.B.-v.d.M.)
- Correspondence:
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15
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Van Rossum F, Le Pajolec S. Mixing gene pools to prevent inbreeding issues in translocated populations of clonal species. Mol Ecol 2021; 30:2756-2771. [PMID: 33890338 DOI: 10.1111/mec.15930] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Revised: 04/01/2021] [Accepted: 04/13/2021] [Indexed: 11/28/2022]
Abstract
Assisted gene flow by plant translocations is increasingly implemented for restoring populations of critically endangered species. The success in restoring genetically healthy populations may depend on translocation design, in particular the choice of the source populations. Highly clonal populations may show low genetic diversity despite large census sizes, and disrupted and geitonogamous pollination may result in selfing and inbreeding issues in the offspring intended for translocation. We carried out a genetic monitoring of translocated populations of the clonal Dianthus deltoides using 14 microsatellite markers and quantified fitness traits over two generations (transplants, F1 seed progeny and newly established individuals). Inbreeding levels were higher in the offspring used as transplants than in the adult generation of the source populations, as a result of high clonality and pollination disruption leading to self-pollination. The F1 generation in translocated populations showed high genetic diversity maintained across generations, diminished inbreeding levels, low genetic differentiation, pollen flow and genetic mixing between the four sources. New individuals were established from seed germination. Fitness patterns were a combination of inbreeding depression in inbred transplants and F1 progeny, heterosis in admixed F1 progeny, source population adaptive capacities, phenotypic plasticity, maternal effects and site environmental specificities. The strategy in the translocation design to mix several local sources, combined with large founding population sizes and ecological management has proved success in initiating the processes leading to the establishment of genetically healthy populations, even when source populations are highly clonal with low genetic diversity leading to inbreeding issues in the transplants.
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Affiliation(s)
- Fabienne Van Rossum
- Meise Botanic Garden, Meise, Belgium.,Service général de l'Enseignement supérieur et de la Recherche scientifique, Fédération Wallonie-Bruxelles, Brussels, Belgium
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16
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Undin M, Lockhart PJ, Hills SFK, Castro I. Genetic Rescue and the Plight of Ponui Hybrids. FRONTIERS IN CONSERVATION SCIENCE 2021. [DOI: 10.3389/fcosc.2020.622191] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
Long-term sustainable and resilient populations is a key goal of conservation. How to best achieve this is controversial. There are, for instance, polarized views concerning the fitness and conservation value of hybrid populations founded through multi-origin translocations. A classic example concerns Apteryx (kiwi) in New Zealand. The A. mantelli of Ponui Island constitute a hybrid population where the birds are highly successful in their island habitat. A key dilemma for managers is understanding the reason for this success. Are the hybrid birds of Ponui Island of “no future conservation value” as recently asserted, or do they represent an outstanding example of genetic rescue and an important resource for future translocations? There has been a paradigm shift in scientific thinking concerning hybrids, but the ecological significance of admixed genomes remains difficult to assess. This limits what we can currently predict in conservation science. New understanding from genome science challenges the sufficiency of population genetic models to inform decision making and suggests instead that the contrasting outcomes of hybridization, “outbreeding depression” and “heterosis,” require understanding additional factors that modulate gene and protein expression and how these factors are influenced by the environment. We discuss these findings and the investigations that might help us to better understand the birds of Ponui, inform conservation management of kiwi and provide insight relevant for the future survival of Apteryx.
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17
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Abdelaziz M, Muñoz-Pajares AJ, Berbel M, García-Muñoz A, Gómez JM, Perfectti F. Asymmetric Reproductive Barriers and Gene Flow Promote the Rise of a Stable Hybrid Zone in the Mediterranean High Mountain. FRONTIERS IN PLANT SCIENCE 2021; 12:687094. [PMID: 34512685 PMCID: PMC8424041 DOI: 10.3389/fpls.2021.687094] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2021] [Accepted: 07/15/2021] [Indexed: 05/13/2023]
Abstract
Hybrid zones have the potential to shed light on evolutionary processes driving adaptation and speciation. Secondary contact hybrid zones are particularly powerful natural systems for studying the interaction between divergent genomes to understand the mode and rate at which reproductive isolation accumulates during speciation. We have studied a total of 720 plants belonging to five populations from two Erysimum (Brassicaceae) species presenting a contact zone in the Sierra Nevada mountains (SE Spain). The plants were phenotyped in 2007 and 2017, and most of them were genotyped the first year using 10 microsatellite markers. Plants coming from natural populations were grown in a common garden to evaluate the reproductive barriers between both species by means of controlled crosses. All the plants used for the field and greenhouse study were characterized by measuring traits related to plant size and flower size. We estimated the genetic molecular variances, the genetic differentiation, and the genetic structure by means of the F-statistic and Bayesian inference. We also estimated the amount of recent gene flow between populations. We found a narrow unimodal hybrid zone where the hybrid genotypes appear to have been maintained by significant levels of a unidirectional gene flow coming from parental populations and from weak reproductive isolation between them. Hybrid plants exhibited intermediate or vigorous phenotypes depending on the analyzed trait. The phenotypic differences between the hybrid and the parental plants were highly coherent between the field and controlled cross experiments and through time. The highly coherent results obtained by combining field, experimental, and genetic data demonstrate the existence of a stable and narrow unimodal hybrid zone between Erysimum mediohispanicum and Erysimum nevadense at the high elevation of the Sierra Nevada mountains.
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Affiliation(s)
- Mohamed Abdelaziz
- Departamento de Genética, Facultad de Ciencias, Campus Fuentenueva, Universidad de Granada, Granada, Spain
- *Correspondence: Mohamed Abdelaziz
| | - A. Jesús Muñoz-Pajares
- Departamento de Genética, Facultad de Ciencias, Campus Fuentenueva, Universidad de Granada, Granada, Spain
- Laboratório Associado, Plant Biology, Research Centre in Biodiversity and Genetic Resources, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade Do Porto, Campus Agrário de Vairão, Fornelo e Vairão, Portugal
- Research Unit Modeling Nature, Universidad de Granada, Granada, Spain
| | - Modesto Berbel
- Departamento de Genética, Facultad de Ciencias, Campus Fuentenueva, Universidad de Granada, Granada, Spain
| | - Ana García-Muñoz
- Departamento de Genética, Facultad de Ciencias, Campus Fuentenueva, Universidad de Granada, Granada, Spain
| | - José M. Gómez
- Research Unit Modeling Nature, Universidad de Granada, Granada, Spain
- Departamento de Ecología Funcional y Evolutiva, Estación Experimental de Zonas Áridas, Consejo Superior de Investigaciones Científicas, Almeria, Spain
| | - Francisco Perfectti
- Departamento de Genética, Facultad de Ciencias, Campus Fuentenueva, Universidad de Granada, Granada, Spain
- Research Unit Modeling Nature, Universidad de Granada, Granada, Spain
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18
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Van Rossum F, Destombes A, Raspé O. Are large census‐sized populations always the best sources for plant translocations? Restor Ecol 2020. [DOI: 10.1111/rec.13316] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Fabienne Van Rossum
- Meise Botanic Garden Nieuwelaan 38, 1860 Meise Belgium
- Service Général de l'Enseignement supérieur et de la Recherche scientifique Fédération Wallonie‐Bruxelles rue A. Lavallée 1, 1080 Brussels Belgium
| | | | - Olivier Raspé
- Meise Botanic Garden Nieuwelaan 38, 1860 Meise Belgium
- Service Général de l'Enseignement supérieur et de la Recherche scientifique Fédération Wallonie‐Bruxelles rue A. Lavallée 1, 1080 Brussels Belgium
- Present address: Center of Excellence in Fungal Research and School of Science Mae Fah Luang University Chiang Rai 57100 Thailand
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19
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Schäfer D, Vincent H, Fischer M, Kempel A. The importance of genetic diversity for the translocation of eight threatened plant species into the wild. Glob Ecol Conserv 2020. [DOI: 10.1016/j.gecco.2020.e01240] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
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20
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Van Rossum F, Hardy OJ, Le Pajolec S, Raspé O. Genetic monitoring of translocated plant populations in practice. Mol Ecol 2020; 29:4040-4058. [PMID: 32654225 DOI: 10.1111/mec.15550] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Revised: 06/18/2020] [Accepted: 07/08/2020] [Indexed: 01/01/2023]
Abstract
Plant translocations allow the restoration of genetic diversity in inbred and depauperate populations and help to prevent the extinction of critically endangered species. However, the successes of plant translocations in restoring genetically viable populations and the possible associated key factors are still insufficiently evaluated. To fill this gap, we carried out a thorough genetic monitoring of three populations of Arnica montana that were created or reinforced by the translocation of plants obtained from seeds of two large natural source populations from southern Belgium. We genotyped nine microsatellite markers and measured fitness quantitative traits over two generations (transplants, F1 seed progeny and newly established F1 juveniles). Two years after translocation, the genetic restoration had been effective, with high genetic diversity and low genetic differentiation across generations, extensive contemporary pollen flow, admixture between seed sources in the F1 generation and recruitment of new individuals from seeds. We detected site, seed source and maternal plant effects on plant fitness. The results also suggest that phenotypic plasticity may favour short-term individual survival and long-term adaptive capacity and enhance the evolutionary resilience of the populations to changing environmental conditions. We found no sign of heterosis or outbreeding depression at early life stages in the F1 generation. Our findings emphasize the importance of the translocation design (700 transplants of mixed sources, planted at high density) as well as the preparatory site management for the successful outcome of the translocations, which maximized flowering, random mating, and recruitment from seeds in the first years after translocation.
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Affiliation(s)
- Fabienne Van Rossum
- Meise Botanic Garden, Meise, Belgium.,Fédération Wallonie-Bruxelles, Service général de l'Enseignement supérieur et de la Recherche scientifique, Brussels, Belgium
| | - Olivier J Hardy
- Unit of Evolutionary Biology and Ecology, Université Libre de Bruxelles, Brussels, Belgium
| | | | - Olivier Raspé
- Meise Botanic Garden, Meise, Belgium.,Fédération Wallonie-Bruxelles, Service général de l'Enseignement supérieur et de la Recherche scientifique, Brussels, Belgium.,Center of Excellence in Fungal Research and School of Science, Mae Fah Luang University, Chiang Rai, Thailand
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21
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Increased Genetic Diversity via Gene Flow Provides Hope for Acacia whibleyana, an Endangered Wattle Facing Extinction. DIVERSITY 2020. [DOI: 10.3390/d12080299] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
In this paper we apply a conservation genomics approach to make evidence-based management recommendations for Acacia whibleyana, an endangered shrub endemic to Eyre Peninsula, South Australia. We used population genomic analysis to assess genetic connectivity, diversity, and historical inbreeding across all known stands of the species sampling remnant stands, revegetated stands of unknown origin, and a post-fire seedling cohort. Our results indicate a degree of historical connectivity across the landscape, but habitat loss and/or pollinator community disruption are potential causes of strong genetic structure across the remnant stands. Remnant stands had low genetic diversity and showed evidence of historical inbreeding, but only low levels of intra-stand relatedness indicating that risks of contemporary inbreeding are low. Analysis of a post-fire first generation cohort of seedlings showed they likely resulted from intra-stand matings, resulting in reduced genetic diversity compared to the parents. However, admixed seedlings in this cohort showed an increase in heterozygosity relative to likely sources and the non-admixed seedlings of the same stand. Assisted inter-stand gene flow may prove an effective management strategy to boost heterozygosity and corresponding increases in adapting capacity in this endangered species.
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Wilder AP, Navarro AY, King SND, Miller WB, Thomas SM, Steiner CC, Ryder OA, Shier DM. Fitness costs associated with ancestry to isolated populations of an endangered species. CONSERV GENET 2020. [DOI: 10.1007/s10592-020-01272-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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23
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Salahshoor M, Roshankhah S, Jalili C. Improvement of Phaseolus vulgaris on breastfeeding in female rats. ASIAN PACIFIC JOURNAL OF REPRODUCTION 2019. [DOI: 10.4103/2305-0500.254648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
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24
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Van Rossum F, Raspé O. Contribution of genetics for implementing population translocation of the threatened Arnica montana. CONSERV GENET 2018. [DOI: 10.1007/s10592-018-1087-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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