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Xiao SJ, Mou ZB, Yang RB, Fan DD, Liu JQ, Zou Y, Zhu SL, Zou M, Zhou CW, Liu HP. Genome and population evolution and environmental adaptation of Glyptosternon maculatum on the Qinghai-Tibet Plateau. Zool Res 2021; 42:502-513. [PMID: 34254744 PMCID: PMC8317186 DOI: 10.24272/j.issn.2095-8137.2021.096] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
Persistent uplift means the Qinghai-Tibet Plateau (QTP) is an ideal natural laboratory to investigate genome evolution and adaptation within highland environments. However, how paleogeographic and paleoclimatic events influence the genome and population of endemic fish species remains unclear. Glyptosternon maculatum is an ancient endemic fish found on the QTP and the only critically endangered species in the Sisoridae family. Here, we found that major transposons in the G. maculatum genome showed episodic bursts, consistent with contemporaneous geological and climatic events during the QTP formation. Notably, histone genes showed significant expansion in the G. maculatum genome, which may be mediated by long interspersed nuclear elements (LINE) repetitive element duplications. Population analysis showed that ancestral G. maculatum populations experienced two significant depressions 2.6 million years ago (Mya) and 10 000 years ago, exhibiting excellent synchronization with Quaternary glaciation and the Younger Dryas, respectively. Thus, we propose that paleogeography and paleoclimate were dominating driving forces for population dynamics in endemic fish on the QTP. Tectonic movements and temperature fluctuation likely destroyed the habitat and disrupted the drainage connectivity among populations. These factors may have caused severe bottlenecks and limited migration among ancestral G. maculatum populations, resulting in the low genetic diversity and endangered status of the species today.
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Affiliation(s)
- Shi-Jun Xiao
- Institute of Fisheries Science, Tibet Academy of Agricultural and Animal Husbandry Sciences, Lhasa, Tibet 810000, China.,Department of Computer Science, Wuhan University of Technology, Wuhan, Hubei 430070, China.,College of Plant Protection, Jilin Agriculture University, Changchun, Jilin 130118, China.,Jiaxing Key Laboratory for New Germplasm Breeding of Economic Mycology, Jiaxing, Zhejiang 314000, China
| | - Zen-Bo Mou
- Institute of Fisheries Science, Tibet Academy of Agricultural and Animal Husbandry Sciences, Lhasa, Tibet 810000, China
| | - Rui-Bin Yang
- College of Fisheries, Huazhong Agricultural University, Wuhan, Hubei 430070, China
| | - Ding-Ding Fan
- College of Fisheries, Huazhong Agricultural University, Wuhan, Hubei 430070, China
| | - Jia-Qi Liu
- Department of Computer Science, Wuhan University of Technology, Wuhan, Hubei 430070, China
| | - Yu Zou
- Department of Computer Science, Wuhan University of Technology, Wuhan, Hubei 430070, China
| | - Shi-Lin Zhu
- Department of Computer Science, Wuhan University of Technology, Wuhan, Hubei 430070, China
| | - Ming Zou
- Department of Computer Science, Wuhan University of Technology, Wuhan, Hubei 430070, China
| | - Chao-Wei Zhou
- Institute of Fisheries Science, Tibet Academy of Agricultural and Animal Husbandry Sciences, Lhasa, Tibet 810000, China.,Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), College of Fisheries, Southwest University, Chongqing 402400, China. E-mail:
| | - Hai-Ping Liu
- Institute of Fisheries Science, Tibet Academy of Agricultural and Animal Husbandry Sciences, Lhasa, Tibet 810000, China. E-mail:
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Li X, Zhu Y, Ringø E, Wang X, Gong J, Yang D. Intestinal microbiome and its potential functions in bighead carp ( Aristichthys nobilis) under different feeding strategies. PeerJ 2018; 6:e6000. [PMID: 30533302 PMCID: PMC6283038 DOI: 10.7717/peerj.6000] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Accepted: 10/25/2018] [Indexed: 01/06/2023] Open
Abstract
Bighead carps (Aristichthys nobilis) were divided into four groups with different feeding strategies: group A, nature live food only (fertiliser only, 200 g urea + 160 g ethylamine phosphate + 250 g Huangjintai bio-fertiliser); group B, nature live food + 1/2 formulated feed; group C, nature live food + formulated feed; and group D, formulated feed only. The intestinal microbiomes of the different groups were compared through the Illumina MiSeq sequencing of the bacterial 16S rRNA gene. The specific growth rate (SGR), survival and blood biochemical factors of the fish were also investigated. Results showed that feeding treatment influenced the intestinal communities in the fish. In specific, more bacterial phyla dominated in groups A and B (phyla Bacteroidetes, Fusobacteria, Firmicutes and Proteobacteria in group A, phyla Proteobacteria and Fusobacteria in group B) than in groups C and D (phylum Proteobacteria). The diversity was also lower in groups C and D than in groups A and B. Unweighted pair-group method analysis revealed a clear difference in intestinal microbiota among the different feeding treatments. No difference in survival rate was found among the treatment groups, but the SGR was significantly higher (P < 0.01) in groups B, C and D than in group A. Functional analysis showed that the intestinal bacteria correlated with fish glucose metabolism in group A but with lipid metabolic activity in groups B, C and D. In summary, the intestinal microbiomes and their potential functions vary in bighead carp under different feeding treatments. This study provides new insights into the gut microbiomes of filter-feeding and formulated diet-fed fish.
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Affiliation(s)
- Xuemei Li
- Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture and Rural Areas of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan, China
| | - Yongjiu Zhu
- Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture and Rural Areas of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan, China
| | - Einar Ringø
- Norwegian College of Fishery Science, Faculty of Biosciences, Fisheries and Economics, UiT The Arctic University of Norway, Tromsø, Norway
| | - Xuge Wang
- Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture and Rural Areas of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan, China
| | - Jinling Gong
- Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture and Rural Areas of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan, China
| | - Deguo Yang
- Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture and Rural Areas of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan, China
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Xiong J, Zhang Y, Sun Y, Liu Q, Fan C, Min Y, Gou J, Chen W. Comparison of hematological parameters in two different high altitudinal populations of Batrachuperus pinchonii (Amphibian: Urodela). AMPHIBIA-REPTILIA 2018. [DOI: 10.1163/15685381-00003142] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Hematological parameters are key to reflect the health status of animals and their physiological adaptation to the environment. However, few studies focused on the inter- and intra-specific variations of hematological parameters in hynobiid salamanders. Here, we examined the hematological parameters of the stream salamander,Batrachuperus pinchonii, originating from two different altitudinal populations to explore their intra-specific variation. Sexual dimorphism is only present in the erythrocyte count and males have higher mean values than females. The morphometric values of erythrocyte, hemoglobin concentration, and erythrocyte count of the high altitudinal (Jiajin) population were smaller than those of the lower altitudinal (Sandaoping) population; however, a significant difference between two populations was only revealed in the case of erythrocyte length via ANOVA. The results of linear regression showed that a significant relationship was present between body condition and erythrocyte length as well as the erythrocyte length to erythrocyte width ratio. Our findings suggest that the features of hematological parameters inB. pinchoniiare reflected in the size of erythrocyte, and neither in erythrocyte count nor in hemoglobin concentration. These results provide a foundation for assessing and monitoring the health status of this salamander species, and furthermore, for understanding the physiological basis of altitudinal adaptation.
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Affiliation(s)
- Jianli Xiong
- Laboratory of Adaptation and Evolution of Aquatic Animals, College of Animal Science and Technology, Henan University of Science and Technology, Luoyang 471023, Henan, China
| | - Yanan Zhang
- Laboratory of Adaptation and Evolution of Aquatic Animals, College of Animal Science and Technology, Henan University of Science and Technology, Luoyang 471023, Henan, China
| | - Yuanye Sun
- Laboratory of Adaptation and Evolution of Aquatic Animals, College of Animal Science and Technology, Henan University of Science and Technology, Luoyang 471023, Henan, China
| | - Qiangqiang Liu
- Laboratory of Adaptation and Evolution of Aquatic Animals, College of Animal Science and Technology, Henan University of Science and Technology, Luoyang 471023, Henan, China
| | - Chaojie Fan
- Laboratory of Adaptation and Evolution of Aquatic Animals, College of Animal Science and Technology, Henan University of Science and Technology, Luoyang 471023, Henan, China
| | - Yao Min
- Laboratory of Adaptation and Evolution of Aquatic Animals, College of Animal Science and Technology, Henan University of Science and Technology, Luoyang 471023, Henan, China
| | - Jianping Gou
- Laboratory of Adaptation and Evolution of Aquatic Animals, College of Animal Science and Technology, Henan University of Science and Technology, Luoyang 471023, Henan, China
| | - Wanguang Chen
- Life Science Department, Luoyang Normal University, Luoyang 471022, Henan, China
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Galagarza OA, Kuhn DD, Smith SA, Hrubec TC. Hematologic and plasma chemistry RIs for cultured Striped catfish (Pangasius hypophthalmus) in recirculating aquaculture systems. Vet Clin Pathol 2017; 46:457-465. [PMID: 28783866 DOI: 10.1111/vcp.12513] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
BACKGROUND Striped catfish (Pangasius hypophthalmus) is a valuable aquaculture fish species produced primarily in Southeast Asia. In the United States, it is bred as an ornamental species. Striped catfish has high productivity and great demand in numerous countries around the world, yet little is known about its normal physiology. OBJECTIVES The objective of this study was to establish hematologic and blood chemistry RIs for healthy juvenile Striped catfish. METHODS Blood samples were collected from 70 Striped catfish raised in recirculating aquaculture systems. Whole blood and plasma samples were analyzed for multiple hematologic and chemistry variables using standard techniques. RESULTS The RIs for hematology were as follows: PCV 23.5-35.9%, MCV 106.3-156.6 fL, RBC count 1.79-2.75 × 106 cells/μL, thrombocytes 26,318-73,333 cells/μL, total WBC count 36,294-94,286 cells/μL, total lymphocytes 18,997-59,998 cells/μL, small lymphocytes 13,763-51,490 cells/μL, large lymphocytes 715-21,200 cells/μL, granulocytes 4504-18,291 cells/μL, and monocytes 0-7549 cells/μL. Plasma chemistry RIs were the following: ALP 32.7-74.6 U/L, AST 20.3-1235.8 U/L, sodium 135.2-147.7 mmol/L, potassium 3.3-5.0 mmol/L, chloride 120.1-133.6 mmol/L, calcium 2.7-3.6 mmol/L, magnesium 0.9-1.3 mmol/L, phosphorous 1.4-2.7 mmol/L, glucose 4.6-7.6 mmol/L, cholesterol 2.8-5.3 mmol/L, total protein 30-42 g/L, albumin 7-11 g/L, globulin 22-32 g/L, albumin:globulin ratio 0.27-0.37, creatinine 0-8 μmol/L, and osmolality 251.8-327.9 mOsm/kg. CONCLUSIONS Reference intervals reported here can help veterinarians and fish health specialists monitor the health status of Striped catfish under recirculating aquaculture conditions for research, exhibition, and production purposes.
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Affiliation(s)
- Oscar A Galagarza
- Department of Food Science and Technology, Virginia-Maryland College of Veterinary Medicine, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA
| | - David D Kuhn
- Department of Food Science and Technology, Virginia-Maryland College of Veterinary Medicine, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA
| | - Stephen A Smith
- Department of Biomedical Sciences and Pathobiology, Virginia-Maryland College of Veterinary Medicine, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA
| | - Terry C Hrubec
- Department of Biomedical Sciences and Pathobiology, Virginia-Maryland College of Veterinary Medicine, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA.,E. Via College of Osteopathic Medicine, Blacksburg, VA, USA
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Zhang HJ, Xie CX, Li DP, Liu HP, Yang XF. Blood cells of a sisorid catfish Glyptosternum maculatum (Siluriformes: Sisoridae), in Tibetan Plateau. FISH PHYSIOLOGY AND BIOCHEMISTRY 2011; 37:169-176. [PMID: 20737208 DOI: 10.1007/s10695-010-9429-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2010] [Accepted: 08/12/2010] [Indexed: 05/29/2023]
Abstract
The peripheral blood cells of a sisorid catfish Glyptosternum maculatum were studied using light microscope and transmission electron microscope. The size of cells and nucleus, and the percentage of different leucocytes were also described. Erythrocytes and four types of leucocytes: lymphocytes, heterophils, monocytes, and thrombocytes were characterized in G. maculatum blood. The dividing erythrocytes could be found sporadically. A plasma cell was observed under a transmission electron microscope. The morphology and structure of blood cells of G. maculatum were basically similar to those of other fish species, although there were also main differences, such as larger erythrocytes than other catfishes, absence of basophils and acidophils, and various types of thrombocytes (five types: lone nucleus, fusiform, tadpole-like, oval, and in a cluster).
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Affiliation(s)
- Hui Juan Zhang
- College of Fisheries, Huazhong Agricultural University, Wuhan, Hubei, People's Republic of China
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