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Gattu R, Ramesh SS, Nadigar S, D CG, Ramesh S. Conjugation as a Tool in Therapeutics: Role of Amino Acids/Peptides-Bioactive (Including Heterocycles) Hybrid Molecules in Treating Infectious Diseases. Antibiotics (Basel) 2023; 12:532. [PMID: 36978399 PMCID: PMC10044335 DOI: 10.3390/antibiotics12030532] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Revised: 02/28/2023] [Accepted: 03/03/2023] [Indexed: 03/30/2023] Open
Abstract
Peptide-based drugs are gaining significant momentum in the modern drug discovery, which is witnessed by the approval of new drugs by the FDA in recent years. On the other hand, small molecules-based drugs are an integral part of drug development since the past several decades. Peptide-containing drugs are placed between small molecules and the biologics. Both the peptides as well as the small molecules (mainly heterocycles) pose several drawbacks as therapeutics despite their success in curing many diseases. This gap may be bridged by utilising the so called 'conjugation chemistry', in which both the partners are linked to one another through a stable chemical bond, and the resulting conjugates are found to possess attracting benefits, thus eliminating the stigma associated with the individual partners. Over the past decades, the field of molecular hybridisation has emerged to afford us new and efficient molecular architectures that have shown high promise in medicinal chemistry. Taking advantage of this and also considering our experience in this field, we present herein a review concerning the molecules obtained by the conjugation of peptides (amino acids) to small molecules (heterocycles as well as bioactive compounds). More than 125 examples of the conjugates citing nearly 100 references published during the period 2000 to 2022 having therapeutic applications in curing infectious diseases have been covered.
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Affiliation(s)
- Rohith Gattu
- Postgraduate Department of Chemistry, JSS College of Arts, Commerce and Science, Ooty Road, Mysuru 570025, Karnataka, India
| | - Sanjay S. Ramesh
- Postgraduate Department of Chemistry, JSS College of Arts, Commerce and Science, Ooty Road, Mysuru 570025, Karnataka, India
| | - Siddaram Nadigar
- Postgraduate Department of Chemistry, JSS College of Arts, Commerce and Science, Ooty Road, Mysuru 570025, Karnataka, India
| | - Channe Gowda D
- Department of Studies in Chemistry, Manasagangotri, University of Mysore, Mysuru 570005, Karnataka, India
| | - Suhas Ramesh
- Postgraduate Department of Chemistry, JSS College of Arts, Commerce and Science, Ooty Road, Mysuru 570025, Karnataka, India
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Pavan Kumar H, Kumara HK, Suhas R, Channe Gowda D. Multitarget-directed therapeutics: (Urea/thiourea) 2 derivatives of diverse heterocyclic-Lys conjugates. Arch Pharm (Weinheim) 2021; 354:e2000468. [PMID: 33728698 DOI: 10.1002/ardp.202000468] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Revised: 02/22/2021] [Accepted: 02/26/2021] [Indexed: 11/11/2022]
Abstract
The synthesis of a new small library of molecules containing bis-urea/thiourea pendants in lysine conjugated to three different heterocycles is described. The heterocycles used in this study have benzisoxazole/piperazine/piperidine units. After a detailed antimicrobial, antioxidant, and anti-inflammatory evaluation, it was found that the most active compounds are 10, 11, 14, 15, 18, 19 and 10, 11, 19 and 8, 9, 12, 13, 16, 17, respectively. Further, it was observed that the presence of all three entities, that is, urea/thiourea, the substituent (OMe/F), as well as the heterocycle, is highly essential for exerting potent activity. Among the heterocycles, the presence of isoxazole seems to be highly beneficial for exerting good potency. In continuation, docking studies have revealed extraordinary binding efficiency for some of the active compounds. Given their potent biological results and docking score, some of the title compounds could be potential drug candidates for microbial-related diseases and provide a basis for future research into the development of molecules possessing multitask ability.
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Affiliation(s)
- H Pavan Kumar
- Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysuru, Karnataka, India
| | - H K Kumara
- Department of Chemistry, KLE Society's Jagadguru Tontadarya College, Gadag, Karnataka, India
| | - R Suhas
- Postgraduate Department of Chemistry, JSS College of Arts, Commerce and Science (A Recognised Research Centre of University of Mysore), Mysuru, Karnataka, India
| | - D Channe Gowda
- Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysuru, Karnataka, India
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Nagalakshmamma V, Venkataswamy M, Pasala C, Umamaheswari A, Thyagaraju K, Nagaraju C, Chalapathi PV. Design, synthesis, anti-tobacco mosaic viral and molecule docking simulations of urea/thiourea derivatives of 2-(piperazine-1-yl)-pyrimidine and 1-(4-Fluoro/4-Chloro phenyl)-piperazine and 1-(4-Chloro phenyl)-piperazine - A study. Bioorg Chem 2020; 102:104084. [PMID: 32693309 DOI: 10.1016/j.bioorg.2020.104084] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2020] [Revised: 07/02/2020] [Accepted: 07/07/2020] [Indexed: 02/07/2023]
Abstract
The objectives of the present work are to design, syhthesize and introduce novel urea/thiourea derivatives of 2-(piperazine-1-yl)-pyrimidine and 1-(4-Fluoro/4-Chloro phenyl)-piperazine molecules as tobacco mosaic virus (TMV) inhibitors. A series of urea/thiourea derivatives containing pyrimidine and piperazine moieties were synthesized, characterized using Fourier-transform infrared (FTIR) mass spectra, nuclear magnetic resonance (NMR) spectroscopy, elemental analysis and evaluated their sustainability using biological experiments. The anti-viral bioassay of the title compounds showed an antiviral activity against TMV. The compounds synthesized, 9j, 6g and 3d, showed highly-potential curative, protective, and inhibitory activities against TMV at 500 mg/mL formulation. All these compounds were allowed to quantum-polarized-ligand (quantum mechanical and molecular mechanical (QM/MM)) docking experiments. The compounds 9j, 6g and 3d structurally exhibited identical higher affinity towards TMV-Helicase and TMV-Coat proteins. The docking interactions proposed had two stage inhibition of TMV virus by binding to coat protein and helicase for inhibition of RNA replication. The long-range molecular dynamics (150 ns) simulations has revealed more consistency by 9j, 6g and 3d. The present study outcomes good binding propensity for active-tunnel of TMV-Hel enzyme, by these thiourea, urea derivatives, 9j, 6g and 3d, to suggest that the designed and synthesized were ideal for proposing as selective novel inhibitors to target for TMV.
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Affiliation(s)
- Vadabingi Nagalakshmamma
- Department of Chemistry, Sri Venkateswara Arts College (TTD's), Sri Venkateswara University,Tirupati, Andhra Pradesh, India
| | - Mallepogu Venkataswamy
- Department of Biochemistry, Sri Venkateswara University, Tirupati, Andhra Pradesh, India
| | - Chiranjeevi Pasala
- Bioinformatics Centre, Department of Bioinformatics, SVIMS University, Tirupati, Andhra Pradesh, India
| | - Amineni Umamaheswari
- Bioinformatics Centre, Department of Bioinformatics, SVIMS University, Tirupati, Andhra Pradesh, India
| | - Kedam Thyagaraju
- Department of Biochemistry, Sri Venkateswara University, Tirupati, Andhra Pradesh, India
| | - Chamarthi Nagaraju
- Department of Chemistry, Sri Venkateswara University, Tirupati, Andhra Pradesh, India
| | - Ponne Venkata Chalapathi
- Department of Chemistry, Sri Venkateswara Arts College (TTD's), Sri Venkateswara University,Tirupati, Andhra Pradesh, India.
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Anil SM, Rajeev N, Kiran KR, Swaroop TR, Mallesha N, Shobith R, Sadashiva MP. Multi-pharmacophore Approach to Bio-therapeutics: Piperazine Bridged Pseudo-peptidic Urea/Thiourea Derivatives as Anti-oxidant Agents. Int J Pept Res Ther 2020. [DOI: 10.1007/s10989-019-09824-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Kumar J, Kumar N, Sati N, Hota PK. Antioxidant properties of ethenyl indole: DPPH assay and TDDFT studies. NEW J CHEM 2020. [DOI: 10.1039/d0nj01317j] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Ethenyl indole exhibits antioxidant activity in a substituent dependent manner. Ethenyls bearing strong electron withdrawing substituents show weak or no antioxidant activities, whereas ethenyls with electron donating substituents exhibit antioxidant properties comparable to vitamin E.
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Affiliation(s)
- Jagdeep Kumar
- Department of Chemistry
- School of Sciences
- Hemvati Nandan Bahuguna Garhwal University
- Srinagar (Garhwal)
- India
| | - Naresh Kumar
- Department of Chemistry
- School of Sciences
- Hemvati Nandan Bahuguna Garhwal University
- Srinagar (Garhwal)
- India
| | - Nitin Sati
- Department of Pharmaceutical Sciences
- School of Sciences
- Hemvati Nandan Bahuguna Garhwal University
- Srinagar (Garhwal)
- India
| | - Prasanta Kumar Hota
- Department of Chemistry
- School of Sciences
- Hemvati Nandan Bahuguna Garhwal University
- Srinagar (Garhwal)
- India
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Imidazolo and tryptophan-imidazolo hybrid derived ureas/thioureas as potent bioactive agents – SAR and molecular modelling studies. Bioorg Chem 2019; 86:34-38. [DOI: 10.1016/j.bioorg.2019.01.027] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2018] [Revised: 10/08/2018] [Accepted: 01/16/2019] [Indexed: 11/18/2022]
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Kumara HK, Ramesh S, Vardhan DMS, Kumar JS, Gowda DC. Dipeptides as linker for multicomponent presentation—a facile, robust, and high-bioactivity yielding strategy. Med Chem Res 2018. [DOI: 10.1007/s00044-018-2168-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Kumara HK, Suhas R, Suyoga Vardhan DM, Shobha M, Channe Gowda D. A correlation study of biological activity and molecular docking of Asp and Glu linked bis-hydrazones of quinazolinones. RSC Adv 2018; 8:10644-10653. [PMID: 35540474 PMCID: PMC9078910 DOI: 10.1039/c8ra00531a] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Accepted: 02/28/2018] [Indexed: 11/29/2022] Open
Abstract
The present investigation involves the synthesis and spectroscopic and biological activity studies of the bis-hydrazones of quinazolinones derived from aspartic acid and glutamic acid. The antioxidant activities of the compounds were evaluated using DPPH, DMPD and ABTS radical scavenging assays whose results revealed that the IC50 of compounds 6, 7, 11, 12, 20, 21, 25 and 26 was lower than those of the standard references. The anti-inflammatory activity was evaluated with a haemolysis assay using a human blood erythrocytes suspension and the results demonstrated that compounds 8, 9, 13, 14, 22, 23, 27 and 28 were excellent anti-inflammatory agents. In addition, the antibacterial and antifungal activities against various clinical pathogens of human origin revealed that compounds 7, 9, 12, 14, 21, 23, 26 and 28 possessed potent antimicrobial properties. Furthermore, to understand the correlation between biological activity and drug-receptor interaction, molecular docking was performed on the active sites of tyrosine kinase (PDB ID: 2HCK), cyclooxygenase-2 (PDB ID: 1CX2) and glucosamine-6-phosphate (GlcN-6-P) synthase (PDB ID: 2VF5) which showed good binding profiles with the targets that can potentially hold the title compounds. The correlation study revealed that compounds containing EDGs (-OH, -OCH3) were excellent antioxidants, compounds with EWGs (-Cl, -NO2) exhibited good anti-inflammatory activity and compounds bearing -OH and -NO2 groups were very good antimicrobials.
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Affiliation(s)
- H K Kumara
- Department of Studies in Chemistry, University of Mysore Manasagangotri Mysuru - 570 006 Karnataka India +91 821 2419664
| | - R Suhas
- Department of Studies in Chemistry, University of Mysore Manasagangotri Mysuru - 570 006 Karnataka India +91 821 2419664
| | - D M Suyoga Vardhan
- Department of Studies in Chemistry, University of Mysore Manasagangotri Mysuru - 570 006 Karnataka India +91 821 2419664
| | - M Shobha
- Department of Studies in Chemistry, University of Mysore Manasagangotri Mysuru - 570 006 Karnataka India +91 821 2419664
| | - D Channe Gowda
- Department of Studies in Chemistry, University of Mysore Manasagangotri Mysuru - 570 006 Karnataka India +91 821 2419664
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9
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Individual and Synergistic Antioxidant Effects of Dipeptides in In Vitro Antioxidant Evaluation Systems. Int J Pept Res Ther 2018. [DOI: 10.1007/s10989-018-9684-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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10
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Wang M, Rakesh KP, Leng J, Fang WY, Ravindar L, Channe Gowda D, Qin HL. Amino acids/peptides conjugated heterocycles: A tool for the recent development of novel therapeutic agents. Bioorg Chem 2017; 76:113-129. [PMID: 29169078 DOI: 10.1016/j.bioorg.2017.11.007] [Citation(s) in RCA: 56] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2017] [Revised: 11/02/2017] [Accepted: 11/15/2017] [Indexed: 10/18/2022]
Abstract
Amino acids/peptide conjugated heterocycles represent an important class of therapeutical agents. Biologically active heterocycles are conjugated with amino acids or peptides to increase the drug resistance. Furthermore, the amino acid/peptide based drugs have low toxicity, ample bioavailability and permeability, modest potency and good metabolic and pharmacokinetic properties. Synthetic amino acid/peptides based heterocyclic conjugates constitute a promising choice for the development of new, less toxic and safer conventional pharmaceutical drugs in the near future. In this review, we discuss and highlight the recent findings of the structural features that encourage biological applications of amino acid/peptides based conjugates.
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Affiliation(s)
- Meng Wang
- Department of Pharmaceutical Engineering, School of Chemistry, Chemical Engineering and Life Science, Wuhan University of Technology, 205 Luoshi Road, Wuhan 430073, PR China
| | - K P Rakesh
- Department of Pharmaceutical Engineering, School of Chemistry, Chemical Engineering and Life Science, Wuhan University of Technology, 205 Luoshi Road, Wuhan 430073, PR China.
| | - Jing Leng
- Department of Pharmaceutical Engineering, School of Chemistry, Chemical Engineering and Life Science, Wuhan University of Technology, 205 Luoshi Road, Wuhan 430073, PR China
| | - Wan-Yin Fang
- Department of Pharmaceutical Engineering, School of Chemistry, Chemical Engineering and Life Science, Wuhan University of Technology, 205 Luoshi Road, Wuhan 430073, PR China
| | - L Ravindar
- Department of Pharmaceutical Engineering, School of Chemistry, Chemical Engineering and Life Science, Wuhan University of Technology, 205 Luoshi Road, Wuhan 430073, PR China
| | - D Channe Gowda
- Department of Studies in Chemistry, University of Mysore, Manasagangotri, Mysuru 570006, Karnataka, India.
| | - Hua-Li Qin
- Department of Pharmaceutical Engineering, School of Chemistry, Chemical Engineering and Life Science, Wuhan University of Technology, 205 Luoshi Road, Wuhan 430073, PR China.
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