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For: Oono Y, Kawahara Y, Yazawa T, Kanamori H, Kuramata M, Yamagata H, Hosokawa S, Minami H, Ishikawa S, Wu J, Antonio B, Handa H, Itoh T, Matsumoto T. Diversity in the complexity of phosphate starvation transcriptomes among rice cultivars based on RNA-Seq profiles. Plant Mol Biol 2013;83:523-37. [PMID: 23857470 PMCID: PMC3830200 DOI: 10.1007/s11103-013-0106-4] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2012] [Accepted: 07/05/2013] [Indexed: 05/23/2023]
Number Cited by Other Article(s)
1
Kettenburg AT, Lopez MA, Yogendra K, Prior MJ, Rose T, Bimson S, Heuer S, Roy SJ, Bailey-Serres J. PHOSPHORUS-STARVATION TOLERANCE 1 (OsPSTOL1) is prevalent in upland rice and enhances root growth and hastens low phosphate signaling in wheat. PLANT, CELL & ENVIRONMENT 2023;46:2187-2205. [PMID: 36946067 DOI: 10.1111/pce.14588] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2022] [Revised: 03/07/2023] [Accepted: 03/19/2023] [Indexed: 06/08/2023]
2
Mou CY, Li Q, Huang ZP, Ke HY, Zhao H, Zhao ZM, Duan YL, Li HD, Xiao Y, Qian ZM, Du J, Zhou J, Zhang L. PacBio single-molecule long-read sequencing provides new insights into the complexity of full-length transcripts in oriental river prawn, macrobrachium nipponense. BMC Genomics 2023;24:340. [PMID: 37340366 DOI: 10.1186/s12864-023-09442-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Accepted: 06/11/2023] [Indexed: 06/22/2023]  Open
3
Haider I, Yunmeng Z, White F, Li C, Incitti R, Alam I, Gojobori T, Ruyter-Spira C, Al-Babili S, Bouwmeester HJ. Transcriptome analysis of the phosphate starvation response sheds light on strigolactone biosynthesis in rice. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023;114:355-370. [PMID: 36775978 DOI: 10.1111/tpj.16140] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Accepted: 02/06/2023] [Indexed: 05/10/2023]
4
Kumar K, Yadava P, Gupta M, Choudhary M, Jha AK, Wani SH, Dar ZA, Kumar B, Rakshit S. Narrowing down molecular targets for improving phosphorus-use efficiency in maize (Zea mays L.). Mol Biol Rep 2022;49:12091-12107. [PMID: 35752697 DOI: 10.1007/s11033-022-07679-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Accepted: 06/06/2022] [Indexed: 10/17/2022]
5
Chang T, An B, Liang M, Duan X, Du L, Cai W, Zhu B, Gao X, Chen Y, Xu L, Zhang L, Gao H, Li J. PacBio Single-Molecule Long-Read Sequencing Provides New Light on the Complexity of Full-Length Transcripts in Cattle. Front Genet 2021;12:664974. [PMID: 34527015 PMCID: PMC8437344 DOI: 10.3389/fgene.2021.664974] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2021] [Accepted: 08/06/2021] [Indexed: 12/02/2022]  Open
6
Wang Y, Duran HGS, van Haarst JC, Schijlen EGWM, Ruyter-Spira C, Medema MH, Dong L, Bouwmeester HJ. The role of strigolactones in P deficiency induced transcriptional changes in tomato roots. BMC PLANT BIOLOGY 2021;21:349. [PMID: 34301182 PMCID: PMC8299696 DOI: 10.1186/s12870-021-03124-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 07/09/2021] [Indexed: 05/25/2023]
7
Sega P, Kruszka K, Bielewicz D, Karlowski W, Nuc P, Szweykowska-Kulinska Z, Pacak A. Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses. BMC Genomics 2021;22:165. [PMID: 33750301 PMCID: PMC7941915 DOI: 10.1186/s12864-021-07481-w] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Accepted: 02/25/2021] [Indexed: 11/22/2022]  Open
8
Takehisa H, Sato Y. Transcriptome-based approaches for clarification of nutritional responses and improvement of crop production. BREEDING SCIENCE 2021;71:76-88. [PMID: 33762878 PMCID: PMC7973498 DOI: 10.1270/jsbbs.20098] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Accepted: 11/01/2020] [Indexed: 06/12/2023]
9
Pei W, Jain A, Zhao G, Feng B, Xu D, Wang X. Knockdown of OsSAE1a affects the growth and development and phosphate homeostasis in rice. JOURNAL OF PLANT PHYSIOLOGY 2020;255:153275. [PMID: 33161338 DOI: 10.1016/j.jplph.2020.153275] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2020] [Revised: 08/31/2020] [Accepted: 08/31/2020] [Indexed: 06/11/2023]
10
Marzec M, Situmorang A, Brewer PB, Brąszewska A. Diverse Roles of MAX1 Homologues in Rice. Genes (Basel) 2020;11:E1348. [PMID: 33202900 PMCID: PMC7709044 DOI: 10.3390/genes11111348] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2020] [Revised: 10/30/2020] [Accepted: 11/10/2020] [Indexed: 02/07/2023]  Open
11
Ueda Y, Ohtsuki N, Kadota K, Tezuka A, Nagano AJ, Kadowaki T, Kim Y, Miyao M, Yanagisawa S. Gene regulatory network and its constituent transcription factors that control nitrogen-deficiency responses in rice. THE NEW PHYTOLOGIST 2020;227:1434-1452. [PMID: 32343414 DOI: 10.1111/nph.16627] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Accepted: 04/15/2020] [Indexed: 05/07/2023]
12
Ai H, Cao Y, Jain A, Wang X, Hu Z, Zhao G, Hu S, Shen X, Yan Y, Liu X, Sun Y, Lan X, Xu G, Sun S. The ferroxidase LPR5 functions in the maintenance of phosphate homeostasis and is required for normal growth and development of rice. JOURNAL OF EXPERIMENTAL BOTANY 2020;71:4828-4842. [PMID: 32618334 PMCID: PMC7475252 DOI: 10.1093/jxb/eraa211] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/01/2020] [Accepted: 07/02/2020] [Indexed: 05/27/2023]
13
Wang H, Wang H, Zhang H, Liu S, Wang Y, Gao Y, Xi F, Zhao L, Liu B, Reddy ASN, Lin C, Gu L. The interplay between microRNA and alternative splicing of linear and circular RNAs in eleven plant species. Bioinformatics 2020;35:3119-3126. [PMID: 30689723 DOI: 10.1093/bioinformatics/btz038] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Revised: 01/02/2019] [Accepted: 01/21/2019] [Indexed: 11/14/2022]  Open
14
Campos‐Soriano L, Bundó M, Bach‐Pages M, Chiang S, Chiou T, San Segundo B. Phosphate excess increases susceptibility to pathogen infection in rice. MOLECULAR PLANT PATHOLOGY 2020;21:555-570. [PMID: 32072745 PMCID: PMC7060143 DOI: 10.1111/mpp.12916] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2019] [Revised: 12/18/2019] [Accepted: 01/10/2020] [Indexed: 05/08/2023]
15
Song S, Wang Z, Ren Y, Sun H. Full-Length Transcriptome Analysis of the ABCB, PIN/PIN-LIKES, and AUX/LAX Families Involved in Somatic Embryogenesis of Lilium pumilum DC. Fisch. Int J Mol Sci 2020;21:E453. [PMID: 31936841 PMCID: PMC7014436 DOI: 10.3390/ijms21020453] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Revised: 01/07/2020] [Accepted: 01/08/2020] [Indexed: 12/13/2022]  Open
16
Wu B, Wang B. Comparative analysis of ascorbate peroxidases (APXs) from selected plants with a special focus on Oryza sativa employing public databases. PLoS One 2019;14:e0226543. [PMID: 31856232 PMCID: PMC6922425 DOI: 10.1371/journal.pone.0226543] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Accepted: 11/29/2019] [Indexed: 12/28/2022]  Open
17
Wang L, Jiang X, Wang L, Wang W, Fu C, Yan X, Geng X. A survey of transcriptome complexity using PacBio single-molecule real-time analysis combined with Illumina RNA sequencing for a better understanding of ricinoleic acid biosynthesis in Ricinus communis. BMC Genomics 2019;20:456. [PMID: 31170917 PMCID: PMC6555039 DOI: 10.1186/s12864-019-5832-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2018] [Accepted: 05/23/2019] [Indexed: 02/07/2023]  Open
18
Silva DAD, Tsai SM, Chiorato AF, da Silva Andrade SC, Esteves JADF, Recchia GH, Morais Carbonell SA. Analysis of the common bean (Phaseolus vulgaris L.) transcriptome regarding efficiency of phosphorus use. PLoS One 2019;14:e0210428. [PMID: 30657755 PMCID: PMC6338380 DOI: 10.1371/journal.pone.0210428] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2017] [Accepted: 12/21/2018] [Indexed: 12/05/2022]  Open
19
Yugandhar P, Sun Y, Liu L, Negi M, Nallamothu V, Sun S, Neelamraju S, Rai V, Jain A. Characterization of the loss-of-function mutant NH101 for yield under phosphate deficiency from EMS-induced mutants of rice variety Nagina22. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2018;130:1-13. [PMID: 29957570 DOI: 10.1016/j.plaphy.2018.06.017] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2018] [Revised: 05/28/2018] [Accepted: 06/14/2018] [Indexed: 05/09/2023]
20
Ren P, Meng Y, Li B, Ma X, Si E, Lai Y, Wang J, Yao L, Yang K, Shang X, Wang H. Molecular Mechanisms of Acclimatization to Phosphorus Starvation and Recovery Underlying Full-Length Transcriptome Profiling in Barley (Hordeum vulgare L.). FRONTIERS IN PLANT SCIENCE 2018;9:500. [PMID: 29720989 PMCID: PMC5915550 DOI: 10.3389/fpls.2018.00500] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2018] [Accepted: 04/03/2018] [Indexed: 05/18/2023]
21
Pei W, Jain A, Sun Y, Zhang Z, Ai H, Liu X, Wang H, Feng B, Sun R, Zhou H, Xu G, Sun S. OsSIZ2 exerts regulatory influences on the developmental responses and phosphate homeostasis in rice. Sci Rep 2017;7:12280. [PMID: 28947784 PMCID: PMC5612973 DOI: 10.1038/s41598-017-10274-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2017] [Accepted: 07/20/2017] [Indexed: 01/01/2023]  Open
22
Heuer S, Gaxiola R, Schilling R, Herrera-Estrella L, López-Arredondo D, Wissuwa M, Delhaize E, Rouached H. Improving phosphorus use efficiency: a complex trait with emerging opportunities. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017;90:868-885. [PMID: 27859875 DOI: 10.1111/tpj.13423] [Citation(s) in RCA: 132] [Impact Index Per Article: 18.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2016] [Revised: 11/02/2016] [Accepted: 11/07/2016] [Indexed: 05/18/2023]
23
Wang D, Lv S, Jiang P, Li Y. Roles, Regulation, and Agricultural Application of Plant Phosphate Transporters. FRONTIERS IN PLANT SCIENCE 2017;8:817. [PMID: 28572810 PMCID: PMC5435767 DOI: 10.3389/fpls.2017.00817] [Citation(s) in RCA: 79] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2017] [Accepted: 05/01/2017] [Indexed: 05/20/2023]
24
Zhou X, Zha M, Huang J, Li L, Imran M, Zhang C. StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato. JOURNAL OF EXPERIMENTAL BOTANY 2017;68:1265-1281. [PMID: 28338870 PMCID: PMC5441854 DOI: 10.1093/jxb/erx026] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
25
Nestler J, Wissuwa M. Superior Root Hair Formation Confers Root Efficiency in Some, But Not All, Rice Genotypes upon P Deficiency. FRONTIERS IN PLANT SCIENCE 2016;7:1935. [PMID: 28066487 PMCID: PMC5174101 DOI: 10.3389/fpls.2016.01935] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2016] [Accepted: 12/06/2016] [Indexed: 05/24/2023]
26
Matsumoto T, Wu J, Itoh T, Numa H, Antonio B, Sasaki T. The Nipponbare genome and the next-generation of rice genomics research in Japan. RICE (NEW YORK, N.Y.) 2016;9:33. [PMID: 27447712 PMCID: PMC4958085 DOI: 10.1186/s12284-016-0107-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2016] [Accepted: 07/03/2016] [Indexed: 05/28/2023]
27
Okazaki Y, Nishizawa T, Takano K, Ohnishi M, Mimura T, Saito K. Induced accumulation of glucuronosyldiacylglycerol in tomato and soybean under phosphorus deprivation. PHYSIOLOGIA PLANTARUM 2015;155:33-42. [PMID: 25677193 DOI: 10.1111/ppl.12334] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2014] [Accepted: 02/05/2015] [Indexed: 05/28/2023]
28
Mehra P, Pandey BK, Giri J. Genome-wide DNA polymorphisms in low Phosphate tolerant and sensitive rice genotypes. Sci Rep 2015;5:13090. [PMID: 26278778 PMCID: PMC4538390 DOI: 10.1038/srep13090] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2014] [Accepted: 07/17/2015] [Indexed: 12/30/2022]  Open
29
Wissuwa M, Kondo K, Fukuda T, Mori A, Rose MT, Pariasca-Tanaka J, Kretzschmar T, Haefele SM, Rose TJ. Unmasking Novel Loci for Internal Phosphorus Utilization Efficiency in Rice Germplasm through Genome-Wide Association Analysis. PLoS One 2015;10:e0124215. [PMID: 25923470 PMCID: PMC4414551 DOI: 10.1371/journal.pone.0124215] [Citation(s) in RCA: 57] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2014] [Accepted: 03/10/2015] [Indexed: 01/10/2023]  Open
30
Bhardwaj D, Medici A, Gojon A, Lacombe B, Tuteja N. A new insight into root responses to external cues: Paradigm shift in nutrient sensing. PLANT SIGNALING & BEHAVIOR 2015;10:e1049791. [PMID: 26146897 PMCID: PMC4854350 DOI: 10.1080/15592324.2015.1049791] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2015] [Revised: 05/06/2015] [Accepted: 05/06/2015] [Indexed: 05/25/2023]
31
Mehra P, Pandey BK, Giri J. Comparative Morphophysiological Analyses and Molecular Profiling Reveal Pi-Efficient Strategies of a Traditional Rice Genotype. FRONTIERS IN PLANT SCIENCE 2015;6:1184. [PMID: 26779218 PMCID: PMC4700128 DOI: 10.3389/fpls.2015.01184] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2015] [Accepted: 12/10/2015] [Indexed: 05/20/2023]
32
Microarray expression analysis of the main inflorescence in Brassica napus. PLoS One 2014;9:e102024. [PMID: 25007212 PMCID: PMC4090195 DOI: 10.1371/journal.pone.0102024] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2014] [Accepted: 06/13/2014] [Indexed: 01/13/2023]  Open
33
López-Arredondo DL, Leyva-González MA, González-Morales SI, López-Bucio J, Herrera-Estrella L. Phosphate nutrition: improving low-phosphate tolerance in crops. ANNUAL REVIEW OF PLANT BIOLOGY 2014;65:95-123. [PMID: 24579991 DOI: 10.1146/annurev-arplant-050213-035949] [Citation(s) in RCA: 391] [Impact Index Per Article: 39.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
34
Kanamori H, Fujisawa M, Katagiri S, Oono Y, Fujisawa H, Karasawa W, Kurita K, Sasaki H, Mori S, Hamada M, Mukai Y, Yazawa T, Mizuno H, Namiki N, Sasaki T, Katayose Y, Matsumoto T, Wu J. A BAC physical map of aus rice cultivar 'Kasalath', and the map-based genomic sequence of 'Kasalath' chromosome 1. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2013;76:699-708. [PMID: 23980637 DOI: 10.1111/tpj.12317] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2013] [Revised: 07/11/2013] [Accepted: 08/20/2013] [Indexed: 05/22/2023]
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