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Mocellin RR, Toigo AL, Dos Santos CC, Frazzon J, Nunes GT, Bugoni L, Prichula J, Frazzon APG. Metal tolerance in enterococci isolated from seabirds in Abrolhos Archipelago, Brazil: Evaluating their role as bioindicators of marine pollution. MARINE POLLUTION BULLETIN 2024; 207:116866. [PMID: 39216259 DOI: 10.1016/j.marpolbul.2024.116866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Revised: 08/06/2024] [Accepted: 08/15/2024] [Indexed: 09/04/2024]
Abstract
Microbiota exposed to pollution provide insights into host physiology and ecosystem disruption. This study evaluated Enterococcus spp. tolerant to arsenic (As), copper (Cu), and mercury (Hg) from red-billed tropicbirds (Phaethon aethereus) and brown boobies (Sula leucogaster), which previously showed these metals in their blood and feathers, and their potential use as bioindicators of metal contamination. Enterococcus casseliflavus (47.9 %), E. faecalis (34.1 %), E. hirae (11.7 %), and E. faecium (5.3 %) were identified. Both seabird species had a high incidence of As-tolerant bacteria (84.0 %), with 40.4 % of these strains containing As efflux system genes (arsA_I and arsA_II). Cu efflux pump gene (tcrB) was detected in 30.9 % of strains, while Hg reductase genes (mer) were not found. As- and Cu-tolerance in enterococci observed in this study underlines their potential as bioindicators in metal-polluted marine environments. Further research may elucidate the role of these metal-tolerant enterococci in seabird gut and their adaptability to polluted environments.
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Affiliation(s)
- Raquel Rita Mocellin
- Programa de Pós-Graduação em Microbiologia Agrícola e do Ambiente, Departamento de Microbiologia, Imunologia e Parasitologia, Instituto de Ciências Básicas da Saúde, Universidade Federal do Rio Grande do Sul - UFRGS, Rua Ramiro Barcelos, 2600, 90035-003 Porto Alegre, RS, Brazil
| | - Amanda Ladeira Toigo
- Departamento de Microbiologia, Imunologia e Parasitologia, Instituto de Ciências Básicas da Saúde, Universidade Federal do Rio Grande do Sul - UFRGS, Rua Ramiro Barcelos, 2600, 90035-003 Porto Alegre, RS, Brazil
| | - Camila Coutinho Dos Santos
- Programa de Pós-Graduação em Microbiologia Agrícola e do Ambiente, Departamento de Microbiologia, Imunologia e Parasitologia, Instituto de Ciências Básicas da Saúde, Universidade Federal do Rio Grande do Sul - UFRGS, Rua Ramiro Barcelos, 2600, 90035-003 Porto Alegre, RS, Brazil
| | - Jeverson Frazzon
- Departamento de Ciência de Alimentos, Instituto de Ciências Básicas da Saúde, Universidade Federal do Rio Grande do Sul - UFRGS, Av. Bento Gonçalves, 9500, 91501-970 Porto Alegre, RS, Brazil
| | - Guilherme Tavares Nunes
- Centro de Estudos Costeiros, Limnológicos e Marinhos, Universidade Federal do Rio Grande do Sul - UFRGS, Avenida Tramandaí, 976, 95625-000 Imbé, RS, Brazil
| | - Leandro Bugoni
- Laboratório de Aves Aquáticas e Tartarugas Marinhas, Universidade Federal do Rio Grande - FURG, Av. Itália, s/n, 96203-900 Rio Grande, RS, Brazil
| | - Janira Prichula
- Department of Ophthalmology, Mass Eye and Ear, Department of Microbiology, Harvard Medical School, Boston, MA, USA
| | - Ana Paula Guedes Frazzon
- Programa de Pós-Graduação em Microbiologia Agrícola e do Ambiente, Departamento de Microbiologia, Imunologia e Parasitologia, Instituto de Ciências Básicas da Saúde, Universidade Federal do Rio Grande do Sul - UFRGS, Rua Ramiro Barcelos, 2600, 90035-003 Porto Alegre, RS, Brazil; Departamento de Microbiologia, Imunologia e Parasitologia, Instituto de Ciências Básicas da Saúde, Universidade Federal do Rio Grande do Sul - UFRGS, Rua Ramiro Barcelos, 2600, 90035-003 Porto Alegre, RS, Brazil.
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2
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Mphephu MM, Olaokun OO, Mavimbela C, Hofmeyer G, Mwale M, Mkolo NM. Metabolomics approach for predicting stomach and colon contents in dead Arctocephalus pusillus pusillus, Arctocephalus tropicalis, Lobodon carcinophaga and Ommatophoca rossii from sub-Antarctic region. PLoS One 2024; 19:e0300319. [PMID: 38557648 PMCID: PMC10984408 DOI: 10.1371/journal.pone.0300319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2023] [Accepted: 02/27/2024] [Indexed: 04/04/2024] Open
Abstract
The dietary habits of seals play a pivotal role in shaping management and administration policies, especially in regions with potential interactions with fisheries. Previous studies have utilized various methods, including traditional approaches, to predict seal diets by retrieving indigestible prey parts, such as calcified structures, from intestines, feces, and stomach contents. Additionally, methods evaluating nitrogen and stable isotopes of carbon have been employed. The metabolomics approach, capable of quantifying small-scale molecules in biofluids, holds promise for specifying dietary exposures and estimating disease risk. This study aimed to assess the diet composition of five seal species-Arctocephalus pusillus pusillus, Lobodon carcinophaga, Ommatophoca rossii, and Arctocephalus tropicalis 1 and 2-by analyzing stomach and colon contents collected from stranded dead seals at various locations. Metabolite concentrations in the seal stomach and colon contents were determined using Nuclear Magnetic Resonance Spectroscopy. Among the colon and stomach contents, 29 known and 8 unknown metabolites were identified. Four metabolites (alanine, fumarate, lactate, and proline) from stomach contents and one metabolite (alanine) from colon contents showed no significant differences between seal species (p>0.05). This suggests that traces of these metabolites in the stomach and colon contents may be produced by the seals' gut microbiome or derived from other animals, possibly indicating reliance on fish caught at sea. Despite this insight, the cause of death for stranded seals remains unclear. The study highlights the need for specific and reliable biomarkers to precisely indicate dietary exposures across seal populations. Additionally, there is a call for the development of relevant metabolite and disease interaction networks to explore disease-related metabolites in seals. Ultimately, the metabolomic method employed in this study reveals potential metabolites in the stomach and colon contents of these seal species.
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Affiliation(s)
- Mukhethwa Micheal Mphephu
- Department of Biology, School of Science and Technology, Sefako Makgatho Health Science University, Ga-Rankuwa, Pretoria, South Africa
| | - Oyinlola Oluwunmi Olaokun
- Department of Biology, School of Science and Technology, Sefako Makgatho Health Science University, Ga-Rankuwa, Pretoria, South Africa
| | - Caswell Mavimbela
- Department of Biology, School of Science and Technology, Sefako Makgatho Health Science University, Ga-Rankuwa, Pretoria, South Africa
| | - Greg Hofmeyer
- Port Elizabeth Museum at Bayworld, Humewood, Port Elizabeth, South Africa
| | - Monica Mwale
- South African National Biodiversity Institute (SANBI), National Zoological Garden, Pretoria, South Africa
| | - Nqobile Monate Mkolo
- Department of Biology, School of Science and Technology, Sefako Makgatho Health Science University, Ga-Rankuwa, Pretoria, South Africa
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3
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Rocha MFG, Diógenes EM, Carvalho VL, Marmontel M, da Costa MO, da Silva VMF, de Souza Amaral R, Gravena W, do Carmo NAS, Marigo J, Ocadaque CJ, Freitas AS, Pinheiro RM, de Lima-Neto RG, de Aguiar Cordeiro R, de Aquino Pereira-Neto W, de Melo Guedes GM, Sidrim JJC, de Souza Collares Maia Castelo-Branco D. Virulence factors of Gram-negative bacteria from free-ranging Amazon river dolphins (Inia geoffrensis). Antonie Van Leeuwenhoek 2023; 116:447-462. [PMID: 36841923 DOI: 10.1007/s10482-023-01812-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Accepted: 01/19/2023] [Indexed: 02/27/2023]
Abstract
Freshwater cetaceans play a significant role as sentinel animals, providing important data on animal species and aquatic ecosystem health. They also may serve as potential reservoirs of emerging pathogens and host virulence genes in their microbiota. In this study, we evaluated virulence factors produced by Gram-negative bacteria recovered from individuals belonging to two populations of free-ranging Amazon river dolphins (Inia geoffrensis). A total of 132 isolates recovered from the oral cavity, blowhole, genital opening and rectum of 21 river dolphins, 13 from Negro River and 8 from Tapajós River, Brazil, were evaluated for the production of virulence factors, such as biofilms and exoproducts (proteases, hemolysins and siderophores), in planktonic and biofilm forms. In planktonic form, 81.1% (107/132) of the tested bacteria of free-ranging Amazon river dolphins were able to produce virulence factors, with 44/132 (33.4%), 65/132 (49,2%) and 54/132 (40,9%) positive for protease, hemolysin and siderophore production, respectively. Overall, 57/132 (43.2%) of the isolates produced biofilms and, under this form of growth, 66/132 (50%), 88/132 (66.7%) and 80/132 (60.6%) of the isolates were positive for protease, hemolysin and siderophore production. In general, the isolates showed a higher release of exoproducts in biofilm than in planktonic form (P < 0.001). The present findings show that Amazon river dolphins harbor potentially pathogenic bacteria in their microbiota, highlighting the importance of monitoring the micro-organisms from wild animals, as they may emerge as pathogens for humans and other animals.
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Affiliation(s)
- Marcos Fábio Gadelha Rocha
- Postgraduate Program in Veterinary Sciences, School of Veterinary, State University of Ceará, Fortaleza, Ceará, Brazil.,Laboratory of Emerging and Reemerging Pathogens, Postgraduate Program in Medical Microbiology, Federal University of Ceará, Rua Coronel Nunes de Melo, 1315. Fortaleza, CEP: 60.430-275, FortalezaCeará, Brazil
| | - Expedito Maia Diógenes
- Group of Applied Medical Microbiology, Postgraduate Program in Medical Microbiology, Federal University of Ceará, Rua Coronel Nunes de Melo, 1315. Fortaleza, CEP: 60.430-275, FortalezaCeará, Brazil
| | - Vitor Luz Carvalho
- Associação de Pesquisa E Preservação de Ecossistemas Aquáticos (AQUASIS), Av. José Alencar, 150. Praia de Iparana, CEP. 61.627-210, Caucaia, Ceará, Brasil.
| | - Miriam Marmontel
- Mamirauá Sustainable Development Institute, Tefé, Amazonas, Brazil
| | | | - Vera M F da Silva
- National Institute of Amazon Research-Inpa/Aquatic Mammals Laboratory, Manaus, Amazon, Brazil
| | - Rodrigo de Souza Amaral
- Federal Institute of Education, Science and Technology of the Amazonas - IFAM, Amazonas, Brazil
| | - Waleska Gravena
- Federal University of Amazonas-UFAM, Campus Coari, Amazonas, Brazil
| | - Nívia A S do Carmo
- Federal University of Pará-UFPA, Belém, Pará, Brazil.,Brazilian Agricultural Research Corporation Eastern Amazon-EMBRAPA, Belém, Pará, Brazil
| | - Juliana Marigo
- Laboratory of Comparative Pathology of Wild Animals, School of Veterinary Medicine and Animal Science, University of São Paulo (LAPCOM, FMVZ-USP), São Paulo, Brazil
| | - Crister José Ocadaque
- Group of Applied Medical Microbiology, Postgraduate Program in Medical Microbiology, Federal University of Ceará, Rua Coronel Nunes de Melo, 1315. Fortaleza, CEP: 60.430-275, FortalezaCeará, Brazil
| | - Alyne Soares Freitas
- Group of Applied Medical Microbiology, Postgraduate Program in Medical Microbiology, Federal University of Ceará, Rua Coronel Nunes de Melo, 1315. Fortaleza, CEP: 60.430-275, FortalezaCeará, Brazil
| | - Rodrigo Machado Pinheiro
- Group of Applied Medical Microbiology, Postgraduate Program in Medical Microbiology, Federal University of Ceará, Rua Coronel Nunes de Melo, 1315. Fortaleza, CEP: 60.430-275, FortalezaCeará, Brazil
| | | | - Rossana de Aguiar Cordeiro
- Laboratory of Emerging and Reemerging Pathogens, Postgraduate Program in Medical Microbiology, Federal University of Ceará, Rua Coronel Nunes de Melo, 1315. Fortaleza, CEP: 60.430-275, FortalezaCeará, Brazil
| | - Waldemiro de Aquino Pereira-Neto
- Laboratory of Emerging and Reemerging Pathogens, Postgraduate Program in Medical Microbiology, Federal University of Ceará, Rua Coronel Nunes de Melo, 1315. Fortaleza, CEP: 60.430-275, FortalezaCeará, Brazil
| | - Glaucia Morgana de Melo Guedes
- Laboratory of Emerging and Reemerging Pathogens, Postgraduate Program in Medical Microbiology, Federal University of Ceará, Rua Coronel Nunes de Melo, 1315. Fortaleza, CEP: 60.430-275, FortalezaCeará, Brazil. .,Group of Applied Medical Microbiology, Postgraduate Program in Medical Microbiology, Federal University of Ceará, Rua Coronel Nunes de Melo, 1315. Fortaleza, CEP: 60.430-275, FortalezaCeará, Brazil.
| | - José Júlio Costa Sidrim
- Laboratory of Emerging and Reemerging Pathogens, Postgraduate Program in Medical Microbiology, Federal University of Ceará, Rua Coronel Nunes de Melo, 1315. Fortaleza, CEP: 60.430-275, FortalezaCeará, Brazil
| | - Débora de Souza Collares Maia Castelo-Branco
- Laboratory of Emerging and Reemerging Pathogens, Postgraduate Program in Medical Microbiology, Federal University of Ceará, Rua Coronel Nunes de Melo, 1315. Fortaleza, CEP: 60.430-275, FortalezaCeará, Brazil.,Group of Applied Medical Microbiology, Postgraduate Program in Medical Microbiology, Federal University of Ceará, Rua Coronel Nunes de Melo, 1315. Fortaleza, CEP: 60.430-275, FortalezaCeará, Brazil
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Gross S, Müller A, Seinige D, Wohlsein P, Oliveira M, Steinhagen D, Kehrenberg C, Siebert U. Occurrence of Antimicrobial-Resistant Escherichia coli in Marine Mammals of the North and Baltic Seas: Sentinels for Human Health. Antibiotics (Basel) 2022; 11:antibiotics11091248. [PMID: 36140027 PMCID: PMC9495373 DOI: 10.3390/antibiotics11091248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Revised: 09/09/2022] [Accepted: 09/12/2022] [Indexed: 11/16/2022] Open
Abstract
Antimicrobial resistance is a global health threat that involves complex, opaque transmission processes in the environment. In particular, wildlife appears to function as a reservoir and vector for antimicrobial-resistant bacteria as well as resistance genes. In the present study, the occurrence of antimicrobial-resistant Escherichia coli was determined in marine mammals and various fish species of the North and Baltic Seas. Rectal or faecal swabs were collected from 66 live-caught or stranded marine mammals and 40 fish specimens. The antimicrobial resistance phenotypes and genotypes of isolated E. coli were determined using disk diffusion tests and PCR assays. Furthermore, isolates were assigned to the four major phylogenetic groups of E. coli. Additionally, post mortem examinations were performed on 41 of the sampled marine mammals. The investigations revealed resistant E. coli in 39.4% of the marine mammal samples, while no resistant isolates were obtained from any of the fish samples. The obtained isolates most frequently exhibited resistance against aminoglycosides, followed by β-lactams. Of the isolates, 37.2% showed multidrug resistance. Harbour porpoises (Phocoena phocoena) mainly carried E. coli isolates belonging to the phylogenetic group B1, while seal isolates were most frequently assigned to group B2. Regarding antimicrobial resistance, no significant differences were seen between the two sampling areas or different health parameters, but multidrug-resistant isolates were more frequent in harbour porpoises than in the sampled seals. The presented results provide information on the distribution of antimicrobial-resistant bacteria in the North and Baltic Seas, and highlight the role of these resident marine mammal species as sentinels from a One Health perspective.
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Affiliation(s)
- Stephanie Gross
- Institute for Terrestrial and Aquatic Wildlife Research, University of Veterinary Medicine Hannover, Foundation, Werftstraße 6, 25761 Büsum, Germany
| | - Anja Müller
- Institute for Veterinary Food Science, Justus Liebig University Giessen, Frankfurter Str. 92, 35392 Giessen, Germany
| | - Diana Seinige
- Office for Veterinary Affairs and Consumer Protection, Ministry of Lower Saxony for Food, Agriculture and Consumer Protection, Alte Grenze 7, 29221 Celle, Germany
| | - Peter Wohlsein
- Department of Pathology, University of Veterinary Medicine Hannover, Bünteweg 17, 30559 Hannover, Germany
| | - Manuela Oliveira
- CIISA—Centre for Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, University of Lisbon, Avenida da Universidade Técnica, 1300-477 Lisbon, Portugal
- Associate Laboratory for Animal and Veterinary Sciences (AL4AnimalS), Avenida da Universidade Técnica, 1300-477 Lisbon, Portugal
| | - Dieter Steinhagen
- Fish Disease Research Unit, University of Veterinary Medicine Hannover, Bünteweg 17, 30559 Hannover, Germany
| | - Corinna Kehrenberg
- Institute for Veterinary Food Science, Justus Liebig University Giessen, Frankfurter Str. 92, 35392 Giessen, Germany
| | - Ursula Siebert
- Institute for Terrestrial and Aquatic Wildlife Research, University of Veterinary Medicine Hannover, Foundation, Werftstraße 6, 25761 Büsum, Germany
- Correspondence:
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Samad MA, Sagor MS, Hossain MS, Karim MR, Mahmud MA, Sarker MS, Shownaw FA, Mia Z, Card RM, Agunos A, Johanna L. High prevalence of vancomycin non-susceptible and multi-drug resistant enterococci in farmed animals and fresh retail meats in Bangladesh. Vet Res Commun 2022; 46:811-822. [PMID: 35338457 DOI: 10.1007/s11259-022-09906-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Accepted: 02/16/2022] [Indexed: 01/02/2023]
Abstract
The emergence of antimicrobial resistant Enterococcus spp., a main cause of untreatable nosocomial infection, in food animals and dissemination to humans is a public health risk. The study was performed to determine the prevalence and antimicrobial resistance, and virulence characteristics of Enterococcus faecalis and Enterococcus faecium in food animals and meats in Bangladesh. Enterococcus spp., were confirmed using sodA gene specific PCR, and antimicrobial resistance and virulence properties were characterized by PCR. Enterococcus spp. were recovered from 57% of the collected samples (n = 201/352). Farm samples yielded significantly higher (p ≤ 0.05) prevalence (62%) than that of retail meat samples (41%). E. faecalis (52%) is most frequently isolated species. Greater proportions of isolates exhibited resistance to tetracycline (74%), erythromycin (65%) and ciprofloxacin (34%). Fifty-one isolates are vancomycin non-susceptible enterococci (VNSE), of which forty-seven are MDR and twenty are linezolid resistant, a last line drug for VNSE. Virulence factors such as gelatinase (gelE), aggregation factor (asa1) and sex pheromone (cpd) are detected along with vancomycin resistance gene (vanA, vanB and vanC2/C3) in VNSE isolates. The high prevalence of MDR enterococci in food animals and retail meats may cause consumers infections with concomitant reduction of available therapeutic options.
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Affiliation(s)
- Mohammed A Samad
- Antimicrobial Resistance Action Centre (ARAC), Animal Health Research Division (AHRD), Bangladesh Livestock Research Institute (BLRI), Savar, 1341, Dhaka, Bangladesh.
| | - Md Shahjalal Sagor
- Antimicrobial Resistance Action Centre (ARAC), Animal Health Research Division (AHRD), Bangladesh Livestock Research Institute (BLRI), Savar, 1341, Dhaka, Bangladesh.,Department of Microbiology, Jagannath University, 1100, Dhaka, Bangladesh
| | - Muhammad Sazzad Hossain
- Antimicrobial Resistance Action Centre (ARAC), Animal Health Research Division (AHRD), Bangladesh Livestock Research Institute (BLRI), Savar, 1341, Dhaka, Bangladesh
| | - Md Rezaul Karim
- Antimicrobial Resistance Action Centre (ARAC), Animal Health Research Division (AHRD), Bangladesh Livestock Research Institute (BLRI), Savar, 1341, Dhaka, Bangladesh
| | - Mohammad Asheak Mahmud
- Antimicrobial Resistance Action Centre (ARAC), Animal Health Research Division (AHRD), Bangladesh Livestock Research Institute (BLRI), Savar, 1341, Dhaka, Bangladesh
| | - Md Samun Sarker
- Antimicrobial Resistance Action Centre (ARAC), Animal Health Research Division (AHRD), Bangladesh Livestock Research Institute (BLRI), Savar, 1341, Dhaka, Bangladesh
| | - Fahria A Shownaw
- Antimicrobial Resistance Action Centre (ARAC), Animal Health Research Division (AHRD), Bangladesh Livestock Research Institute (BLRI), Savar, 1341, Dhaka, Bangladesh
| | - Zakaria Mia
- Department of Microbiology, Jagannath University, 1100, Dhaka, Bangladesh
| | - Roderick M Card
- Animal and Plant Health Agency (APHA), Weybridge, KT15 3NB, UK
| | - Agnes Agunos
- FAO Regional Office for Asia and the Pacific, Bangkok, Thailand.,Center for Foodborne, Environmental and Zoonotic Infectious Diseases, Public Health Agency of Canada, Guelph, Ontario, Canada
| | - Lindahl Johanna
- International Livestock Research Institute (ILRI), Nairobi, 00100, Kenya.,Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.,Department of Clinical Sciences, Swedish University of Agricultural Sciences, Uppsala, Sweden
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6
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Jia T, Chang WS, Marcelino VR, Zhao S, Liu X, You Y, Holmes EC, Shi M, Zhang C. Characterization of the Gut Microbiome and Resistomes of Wild and Zoo-Captive Macaques. Front Vet Sci 2022; 8:778556. [PMID: 35141306 PMCID: PMC8819141 DOI: 10.3389/fvets.2021.778556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Accepted: 12/21/2021] [Indexed: 11/13/2022] Open
Abstract
Rhesus macaques (Macaca mulatta) are the most widely distributed species of Old World monkey and are frequently used as animal models to study human health and disease. Their gastrointestinal microbial community likely plays a major role in their physiology, ecology and evolution. Herein, we compared the fecal microbiome and antibiotic resistance genes in 15 free-ranging and 81 zoo-captive rhesus macaques sampled from two zoos in China, using both 16S amplicon sequencing and whole genome shotgun DNA sequencing approaches. Our data revealed similar levels of microbial diversity/richness among the three groups, although the composition of each group differed significantly and were particularly marked between the two zoo-captive and one wild groups. Zoo-captive animals also demonstrated a greater abundance and diversity of antibiotic genes. Through whole genome shotgun sequencing we also identified a mammalian (simian) associated adenovirus. Overall, this study provides a comprehensive analysis of resistomes and microbiomes in zoo-captive and free-ranging monkeys, revealing that semi-captive wildlife might harbor a higher diversity of antimicrobial resistant genes.
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Affiliation(s)
- Ting Jia
- Beijing Key Laboratory of Captive Wildlife Technologies, Beijing Zoo, Beijing, China
| | - Wei-Shan Chang
- Sydney Institute for Infectious Diseases, School of Life and Environmental Sciences and School of Medical Sciences, The University of Sydney, Sydney, NSW, Australia
- *Correspondence: Wei-Shan Chang
| | - Vanessa R. Marcelino
- Sydney Institute for Infectious Diseases, School of Life and Environmental Sciences and School of Medical Sciences, The University of Sydney, Sydney, NSW, Australia
- Department of Molecular and Translational Sciences, Monash University, Clayton, VIC, Australia
- Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, VIC, Australia
| | - Sufen Zhao
- Beijing Key Laboratory of Captive Wildlife Technologies, Beijing Zoo, Beijing, China
| | - Xuefeng Liu
- Beijing Key Laboratory of Captive Wildlife Technologies, Beijing Zoo, Beijing, China
| | - Yuyan You
- Beijing Key Laboratory of Captive Wildlife Technologies, Beijing Zoo, Beijing, China
| | - Edward C. Holmes
- Sydney Institute for Infectious Diseases, School of Life and Environmental Sciences and School of Medical Sciences, The University of Sydney, Sydney, NSW, Australia
| | - Mang Shi
- School of Medicine, Sun Yat-sen University, Guangzhou, China
- Mang Shi
| | - Chenglin Zhang
- Beijing Key Laboratory of Captive Wildlife Technologies, Beijing Zoo, Beijing, China
- Chenglin Zhang
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7
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Kanaan MHG. Prevalence, resistance to antimicrobials, and antibiotypes of Arcobacter species recovered from retail meat in Wasit marketplaces in Iraq. INTERNATIONAL JOURNAL OF ONE HEALTH 2021. [DOI: 10.14202/ijoh.2021.142-150] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Background and Aim: Arcobacter is a food-borne pathogen associated with human and animal infections. In Iraq, these infections and their adverse effects on public health have not been well investigated. For this reason, as well as to submit data on the resistance to antimicrobials and antibiotypes of the Arcobacter spp. and their occurrence in retail meat in the Wasit marketplaces, this study was undertaken.
Materials and Methods: A total of 83 samples of fresh raw (n=35) and chilled meat (n=48) were purchased randomly from marketplaces in various regions of the Wasit Governorate. Bacterial detection was conducted using cultural methods, biochemical analysis, and the Oxoid Biomedical Identification System Campy. Confirmation of these bacteria at the species level was performed using the multiplex polymerase chain reaction method. Susceptibility of the Arcobacter spp. to antimicrobials was investigated in 11 isolates comprising Arcobacter butzleri (n=9) and Arcobacter cryaerophilus (n=2) using the Kirby–Bauer disk diffusion method.
Results: A total of 32 (38.6%) of the 83 fresh raw and chilled meat samples tested positive for Arcobacter spp.; of those, 27 (84.4%) and 5 (15.6%) were recognized as A. butzleri and A. cryaerophilus, respectively. Maximum resistance was perceived, respectively, to tetracycline, erythromycin, and ampicillin (90.9%, 81.8%, and 81.8%, respectively). In contrast, a low resistance rate against fluoroquinolones up to 9.09% was found. Antibiograms of the A. butzleri and A. cryaerophilus isolates yielded ten antibiotypes. The vast majority of the isolates (90.91%) were resistant to no fewer than three classes of antimicrobials, and 27.3% of these showed resistance to six antibiotics. A total of 91% of the analyzed isolates had a multiple antibiotic resistance index score between 0.27 and 0.73.
Conclusion: Our outcomes demonstrated that retail meat can be a prospective vehicle for pathogenic Arcobacter, making these products a possible risk to human health. Our outcomes postulate that the contamination of retail meats by pathogenic Arcobacter is a global public health concern, particularly with the growing resistance to life-saving drugs, and emphasizes consumer understanding about the quality and safety of these products. To achieve healthy food products, good management practices, and successful control approaches must be implemented across the entire food chain, not only to protect consumers from these contaminants but also to minimize the risk of drug resistance.
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Affiliation(s)
- Manal H. G. Kanaan
- Department of Agriculture/Technical Institute of Suwaria, Middle Technical University, Baghdad, Iraq
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8
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Grassotti TT, Zvoboda DA, Costa LFX, Christiano FDP, Mann MB, Wagner PGC, Campos AAS, Frazzon J, Frazzon APG. Intra and inter-monkey transmission of bacteria in wild black capuchins monkeys (Sapajus nigritus): a preliminary study. BRAZ J BIOL 2021; 82:e237460. [PMID: 34133553 DOI: 10.1590/1519-6984.237460] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Accepted: 10/15/2020] [Indexed: 01/01/2023] Open
Affiliation(s)
- T T Grassotti
- Universidade Federal do Rio Grande do Sul - UFRGS, Programa de Pós-graduação em Microbiologia Agrícola e do Ambiente, Porto Alegre, RS, Brasil
| | - D A Zvoboda
- Universidade Federal do Rio Grande do Sul - UFRGS, Departamento de Microbiologia, Imunologia e Parasitologia, Porto Alegre, RS, Brasil
| | - L F X Costa
- Universidade Federal do Rio Grande do Sul - UFRGS, Programa de Pós-graduação em Microbiologia Agrícola e do Ambiente, Porto Alegre, RS, Brasil
| | - F D P Christiano
- Universidade Federal do Rio Grande do Sul - UFRGS, Departamento de Microbiologia, Imunologia e Parasitologia, Porto Alegre, RS, Brasil
| | - M B Mann
- Universidade Federal do Rio Grande do Sul - UFRGS, Programa de Pós-graduação em Microbiologia Agrícola e do Ambiente, Porto Alegre, RS, Brasil
| | - P G C Wagner
- Instituto Brasileiro do Meio Ambiente e dos Recursos Naturais Renováveis - IBAMA, Porto Alegre, RS, Brasil
| | - A A S Campos
- Secretaria da Saúde do Estado do Rio Grande do Sul, Centro Estadual de Vigilância em Saúde - CEVS, Porto Alegre, RS, Brasil
| | - J Frazzon
- Universidade Federal do Rio Grande do Sul - UFRGS, Instituto de Ciência e Tecnologia de Alimentos, Porto Alegre, RS, Brasil
| | - A P G Frazzon
- Universidade Federal do Rio Grande do Sul - UFRGS, Programa de Pós-graduação em Microbiologia Agrícola e do Ambiente, Porto Alegre, RS, Brasil.,Universidade Federal do Rio Grande do Sul - UFRGS, Departamento de Microbiologia, Imunologia e Parasitologia, Porto Alegre, RS, Brasil
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9
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Prichula J, Primon-Barros M, Luz RCZ, Castro ÍMS, Paim TGS, Tavares M, Ligabue-Braun R, d’Azevedo PA, Frazzon J, Frazzon APG, Seixas A, Gilmore MS. Genome Mining for Antimicrobial Compounds in Wild Marine Animals-Associated Enterococci. Mar Drugs 2021; 19:328. [PMID: 34204046 PMCID: PMC8229437 DOI: 10.3390/md19060328] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2021] [Revised: 05/28/2021] [Accepted: 06/03/2021] [Indexed: 12/20/2022] Open
Abstract
New ecosystems are being actively mined for new bioactive compounds. Because of the large amount of unexplored biodiversity, bacteria from marine environments are especially promising. Further, host-associated microbes are of special interest because of their low toxicity and compatibility with host health. Here, we identified and characterized biosynthetic gene clusters encoding antimicrobial compounds in host-associated enterococci recovered from fecal samples of wild marine animals remote from human-affected ecosystems. Putative biosynthetic gene clusters in the genomes of 22 Enterococcus strains of marine origin were predicted using antiSMASH5 and Bagel4 bioinformatic software. At least one gene cluster encoding a putative bioactive compound precursor was identified in each genome. Collectively, 73 putative antimicrobial compounds were identified, including 61 bacteriocins (83.56%), 10 terpenes (13.70%), and 2 (2.74%) related to putative nonribosomal peptides (NRPs). Two of the species studied, Enterococcus avium and Enterococcus mundtti, are rare causes of human disease and were found to lack any known pathogenic determinants but yet possessed bacteriocin biosynthetic genes, suggesting possible additional utility as probiotics. Wild marine animal-associated enterococci from human-remote ecosystems provide a potentially rich source for new antimicrobial compounds of therapeutic and industrial value and potential probiotic application.
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Affiliation(s)
- Janira Prichula
- Gram-Positive Cocci Laboratory, Federal University of Health Sciences of Porto Alegre (UFCSPA), Porto Alegre 90050-170, RS, Brazil; (J.P.); (M.P.-B.); (R.C.Z.L.); (Í.M.S.C.); (T.G.S.P.); (P.A.d.)
| | - Muriel Primon-Barros
- Gram-Positive Cocci Laboratory, Federal University of Health Sciences of Porto Alegre (UFCSPA), Porto Alegre 90050-170, RS, Brazil; (J.P.); (M.P.-B.); (R.C.Z.L.); (Í.M.S.C.); (T.G.S.P.); (P.A.d.)
| | - Romeu C. Z. Luz
- Gram-Positive Cocci Laboratory, Federal University of Health Sciences of Porto Alegre (UFCSPA), Porto Alegre 90050-170, RS, Brazil; (J.P.); (M.P.-B.); (R.C.Z.L.); (Í.M.S.C.); (T.G.S.P.); (P.A.d.)
| | - Ícaro M. S. Castro
- Gram-Positive Cocci Laboratory, Federal University of Health Sciences of Porto Alegre (UFCSPA), Porto Alegre 90050-170, RS, Brazil; (J.P.); (M.P.-B.); (R.C.Z.L.); (Í.M.S.C.); (T.G.S.P.); (P.A.d.)
| | - Thiago G. S. Paim
- Gram-Positive Cocci Laboratory, Federal University of Health Sciences of Porto Alegre (UFCSPA), Porto Alegre 90050-170, RS, Brazil; (J.P.); (M.P.-B.); (R.C.Z.L.); (Í.M.S.C.); (T.G.S.P.); (P.A.d.)
| | - Maurício Tavares
- Centro de Estudos Costeiros, Limnológicos e Marinhos (CECLIMAR), Universidade Federal do Rio Grande do Sul (UFRGS), Campus Litoral Norte, Imbé 95625-000, RS, Brazil;
| | - Rodrigo Ligabue-Braun
- Department of Pharmacosciences, UFCSPA, Porto Alegre 90050-170, RS, Brazil; (R.L.-B.); (A.S.)
| | - Pedro A. d’Azevedo
- Gram-Positive Cocci Laboratory, Federal University of Health Sciences of Porto Alegre (UFCSPA), Porto Alegre 90050-170, RS, Brazil; (J.P.); (M.P.-B.); (R.C.Z.L.); (Í.M.S.C.); (T.G.S.P.); (P.A.d.)
| | - Jeverson Frazzon
- Food Science Institute, UFRGS, Porto Alegre 90035-003, RS, Brazil;
| | - Ana P. G. Frazzon
- Department of Microbiology, Immunology and Parasitology, UFRGS, Porto Alegre 90050-170, RS, Brazil;
| | - Adriana Seixas
- Department of Pharmacosciences, UFCSPA, Porto Alegre 90050-170, RS, Brazil; (R.L.-B.); (A.S.)
| | - Michael S. Gilmore
- Massachusetts Eye and Ear Infirmary, Department of Ophthalmology, Harvard Medical School, Boston, MA 02114, USA
- Department of Microbiology, Harvard Medical School, Boston, MA 02115, USA
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10
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Grünzweil OM, Palmer L, Cabal A, Szostak MP, Ruppitsch W, Kornschober C, Korus M, Misic D, Bernreiter-Hofer T, Korath ADJ, Feßler AT, Allerberger F, Schwarz S, Spergser J, Müller E, Braun SD, Monecke S, Ehricht R, Walzer C, Smodlaka H, Loncaric I. Presence of β-Lactamase-producing Enterobacterales and Salmonella Isolates in Marine Mammals. Int J Mol Sci 2021; 22:ijms22115905. [PMID: 34072783 PMCID: PMC8199236 DOI: 10.3390/ijms22115905] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Revised: 05/27/2021] [Accepted: 05/28/2021] [Indexed: 02/07/2023] Open
Abstract
Marine mammals have been described as sentinels of the health of marine ecosystems. Therefore, the aim of this study was to investigate (i) the presence of extended-spectrum β-lactamase (ESBL)- and AmpC-producing Enterobacterales, which comprise several bacterial families important to the healthcare sector, as well as (ii) the presence of Salmonella in these coastal animals. The antimicrobial resistance pheno- and genotypes, as well as biocide susceptibility of Enterobacterales isolated from stranded marine mammals, were determined prior to their rehabilitation. All E. coli isolates (n = 27) were screened for virulence genes via DNA-based microarray, and twelve selected E. coli isolates were analyzed by whole-genome sequencing. Seventy-one percent of the Enterobacterales isolates exhibited a multidrug-resistant (MDR) pheno- and genotype. The gene blaCMY (n = 51) was the predominant β-lactamase gene. In addition, blaTEM-1 (n = 38), blaSHV-33 (n = 8), blaCTX-M-15 (n = 7), blaOXA-1 (n = 7), blaSHV-11 (n = 3), and blaDHA-1 (n = 2) were detected. The most prevalent non-β-lactamase genes were sul2 (n = 38), strA (n = 34), strB (n = 34), and tet(A) (n = 34). Escherichia coli isolates belonging to the pandemic sequence types (STs) ST38, ST167, and ST648 were identified. Among Salmonella isolates (n = 18), S. Havana was the most prevalent serotype. The present study revealed a high prevalence of MDR bacteria and the presence of pandemic high-risk clones, both of which are indicators of anthropogenic antimicrobial pollution, in marine mammals.
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Affiliation(s)
- Olivia M. Grünzweil
- Institute of Microbiology, University of Veterinary Medicine, 1210 Vienna, Austria; (O.M.G.); (M.P.S.); (T.B.-H.); (A.D.J.K.); (J.S.)
| | - Lauren Palmer
- Marine Mammal Care Center, Los Angeles, CA 90731, USA;
| | - Adriana Cabal
- Austrian Agency for Health and Food Safety (AGES), Institute of Medical Microbiology and Hygiene, 1090 Vienna, Austria; (A.C.); (W.R.); (F.A.)
| | - Michael P. Szostak
- Institute of Microbiology, University of Veterinary Medicine, 1210 Vienna, Austria; (O.M.G.); (M.P.S.); (T.B.-H.); (A.D.J.K.); (J.S.)
| | - Werner Ruppitsch
- Austrian Agency for Health and Food Safety (AGES), Institute of Medical Microbiology and Hygiene, 1090 Vienna, Austria; (A.C.); (W.R.); (F.A.)
| | - Christian Kornschober
- Austrian Agency for Health and Food Safety (AGES), National Reference Centre for Salmonella, 8010 Graz, Austria;
| | - Maciej Korus
- Department of Functional Food Products Development, Faculty of Biotechnology and Food Science, Wroclaw University of Environmental and Life Sciences, 51-630 Wroclaw, Poland; (M.K.); (D.M.)
| | - Dusan Misic
- Department of Functional Food Products Development, Faculty of Biotechnology and Food Science, Wroclaw University of Environmental and Life Sciences, 51-630 Wroclaw, Poland; (M.K.); (D.M.)
| | - Tanja Bernreiter-Hofer
- Institute of Microbiology, University of Veterinary Medicine, 1210 Vienna, Austria; (O.M.G.); (M.P.S.); (T.B.-H.); (A.D.J.K.); (J.S.)
- Department for Farm Animals and Veterinary Public Health, University Clinic for Swine, University of Veterinary Medicine, 1210 Vienna, Austria
| | - Anna D. J. Korath
- Institute of Microbiology, University of Veterinary Medicine, 1210 Vienna, Austria; (O.M.G.); (M.P.S.); (T.B.-H.); (A.D.J.K.); (J.S.)
| | - Andrea T. Feßler
- Centre for Infection Medicine, Department of Veterinary Medicine, Institute of Microbiology and Epizootics, Freie Universität Berlin, 14163 Berlin, Germany; (A.T.F.); (S.S.)
| | - Franz Allerberger
- Austrian Agency for Health and Food Safety (AGES), Institute of Medical Microbiology and Hygiene, 1090 Vienna, Austria; (A.C.); (W.R.); (F.A.)
| | - Stefan Schwarz
- Centre for Infection Medicine, Department of Veterinary Medicine, Institute of Microbiology and Epizootics, Freie Universität Berlin, 14163 Berlin, Germany; (A.T.F.); (S.S.)
| | - Joachim Spergser
- Institute of Microbiology, University of Veterinary Medicine, 1210 Vienna, Austria; (O.M.G.); (M.P.S.); (T.B.-H.); (A.D.J.K.); (J.S.)
| | - Elke Müller
- Leibniz Institute of Photonic Technology (IPHT), 07745 Jena, Germany; (E.M.); (S.D.B.); (S.M.); (R.E.)
- InfectoGnostics Research Campus, 07743 Jena, Germany
| | - Sascha D. Braun
- Leibniz Institute of Photonic Technology (IPHT), 07745 Jena, Germany; (E.M.); (S.D.B.); (S.M.); (R.E.)
- InfectoGnostics Research Campus, 07743 Jena, Germany
| | - Stefan Monecke
- Leibniz Institute of Photonic Technology (IPHT), 07745 Jena, Germany; (E.M.); (S.D.B.); (S.M.); (R.E.)
- InfectoGnostics Research Campus, 07743 Jena, Germany
- Institute for Medical Microbiology and Hygiene, Technical University of Dresden, 01307 Dresden, Germany
| | - Ralf Ehricht
- Leibniz Institute of Photonic Technology (IPHT), 07745 Jena, Germany; (E.M.); (S.D.B.); (S.M.); (R.E.)
- InfectoGnostics Research Campus, 07743 Jena, Germany
- Institute of Physical Chemistry, Friedrich Schiller University Jena, 07743 Jena, Germany
| | - Chris Walzer
- Research Institute of Wildlife Ecology, University of Veterinary Medicine, 1160 Vienna, Austria;
- Health Program, Wildlife Conservation Society, Bronx, New York City, NY 10460, USA
| | - Hrvoje Smodlaka
- College of Veterinary Medicine, Western University of Health Sciences, Pomona, CA 91766-1854, USA;
| | - Igor Loncaric
- Institute of Microbiology, University of Veterinary Medicine, 1210 Vienna, Austria; (O.M.G.); (M.P.S.); (T.B.-H.); (A.D.J.K.); (J.S.)
- Correspondence: ; Tel.: +43-125-077-2115
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11
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Oliveira de Araujo G, Huff R, Favarini MO, Mann MB, Peters FB, Frazzon J, Guedes Frazzon AP. Multidrug Resistance in Enterococci Isolated From Wild Pampas Foxes ( Lycalopex gymnocercus) and Geoffroy's Cats ( Leopardus geoffroyi) in the Brazilian Pampa Biome. Front Vet Sci 2020; 7:606377. [PMID: 33426025 PMCID: PMC7793794 DOI: 10.3389/fvets.2020.606377] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Accepted: 11/03/2020] [Indexed: 12/31/2022] Open
Abstract
Enterococci are ubiquitous microorganisms present in various environments and within the gastrointestinal tracts of humans and other animals. Notably, fecal enterococci are suitable indicators for monitoring antimicrobial resistance dissemination. Resistant bacterial strains recovered from the fecal samples of wild animals can highlight important aspects of environmental disturbances. In this report, we investigated antimicrobial susceptibility as well as resistance and virulence genes in fecal enterococci isolated from wild Pampas foxes (Lycalopex gymnocercus) (n = 5) and Geoffroy's cats (Leopardus geoffroyi) (n = 4) in the Brazilian Pampa biome. Enterococci were isolated from eight out of nine fecal samples and Enterococcus faecalis was identified in both animals. However, E. faecium and E. durans were only detected in Pampas foxes, while E. hirae was only detected in Geoffroy's cats. Antimicrobial susceptibility analysis showed resistance to rifampicin (94%), erythromycin (72.6%), ciprofloxacin/norfloxacin (40%), streptomycin (38%), and tetracycline (26%). The high frequency of multidrug-resistant enterococci (66%) isolated in this study is a matter of concern since these are wild animals with no history of therapeutic antibiotic exposure. The tetM/tetL and msrC/ermB genes were detected in most tetracycline- and erythromycin-resistant enterococci, respectively. The gelE, ace, agg, esp, and clyA virulence genes were also detected in enterococci. In conclusion, our data suggest that habitat fragmentation and anthropogenic activities in the Pampa biome may contribute to high frequencies of multidrug-resistant enterococci in the gut communities of wild Pampas foxes and Geoffroy's cats. To the best of the authors' knowledge, this is the first report of antimicrobial-resistant enterococci in the Pampa biome.
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Affiliation(s)
- Gabriella Oliveira de Araujo
- Graduate Program in Agricultural and Environmental Microbiology, Institute of Basic Health Sciences, Federal University of Rio Grande Do Sul, Porto Alegre, Brazil
| | - Rosana Huff
- Graduate Program in Agricultural and Environmental Microbiology, Institute of Basic Health Sciences, Federal University of Rio Grande Do Sul, Porto Alegre, Brazil
| | - Marina Ochoa Favarini
- Institute for the Conservation of Neotropical Carnivores- "Pró-Carnívoros", Atibaia, Brazil
| | - Michele Bertoni Mann
- Graduate Program in Agricultural and Environmental Microbiology, Institute of Basic Health Sciences, Federal University of Rio Grande Do Sul, Porto Alegre, Brazil
| | | | - Jeverson Frazzon
- Institute of Food Science and Technology, Federal University of Rio Grande Do Sul, Porto Alegre, Brazil
| | - Ana Paula Guedes Frazzon
- Graduate Program in Agricultural and Environmental Microbiology, Institute of Basic Health Sciences, Federal University of Rio Grande Do Sul, Porto Alegre, Brazil
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12
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Enterococci from Wild Magellanic Penguins (Spheniscus magellanicus) as an Indicator of Marine Ecosystem Health and Human Impact. Appl Environ Microbiol 2020; 86:AEM.01662-20. [PMID: 32737129 DOI: 10.1128/aem.01662-20] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Accepted: 07/23/2020] [Indexed: 12/14/2022] Open
Abstract
Enterococci are commensals that proliferated as animals crawled ashore hundreds of millions of years ago. They are also leading causes of multidrug-resistant hospital-acquired infections. While most studies are driven by clinical interest, comparatively little is known about enterococci in the wild or the effect of human activity on them. Pharmaceutical pollution and runoff from other human activities are encroaching widely into natural habitats. To assess their reach into remote habitats, we investigated the identity, genetic relatedness, and presence of specific traits among 172 enterococcal isolates from wild Magellanic penguins. Four enterococcal species, 18 lineage groups, and different colonization patterns were identified. One Enterococcus faecalis lineage, sequence type 475 (ST475), was isolated from three different penguins, making it of special interest. Its genome was compared to those of other E. faecalis sequence types (ST116 and ST242) recovered from Magellanic penguins, as well as to an existing phylogeny of E. faecalis isolated from diverse origins over the past 100 years. No penguin-derived E. faecalis strains were closely related to dominant clinical lineages. Most possessed intact CRISPR defenses, few mobile elements, and antibiotic resistances limited to those intrinsic to the species and lacked pathogenic features conveyed by mobile elements. Interestingly, plasmids were identified in penguin isolates that also had been reported for other marine mammals. Enterococci isolated from penguins showed limited anthropogenic impact, indicating that they are likely representative of those naturally circulating in the ecosystem inhabited by the penguins. These findings establish an important baseline for detecting the encroachment of human activity into remote planetary environments.IMPORTANCE Enterococci are host-associated microbes that have an unusually broad range, from the built hospital environment to the guts of insects and other animals in remote locations. Despite their occurrence in the guts of animals for hundreds of millions of years, we know little about the properties that confer this range or how anthropogenic activities may be introducing new selective forces. Magellanic penguins live at the periphery of human habitation. It was of interest to examine enterococci from these animals for the presence of antibiotic resistance and other markers reflective of anthropogenic selection. Diverse enterococcal lineages found discount the existence of a single well-adapted intrinsic penguin-specific species. Instead, they appear to be influenced by a carnivorous lifestyle and enterococci present in the coastal sea life consumed. These results indicate that currently, the penguin habitat remains relatively free of pollutants that select for adaptation to human-derived stressors.
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Is Caretta Caretta a Carrier of Antibiotic Resistance in the Mediterranean Sea? Antibiotics (Basel) 2020; 9:antibiotics9030116. [PMID: 32164241 PMCID: PMC7148500 DOI: 10.3390/antibiotics9030116] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Revised: 03/03/2020] [Accepted: 03/05/2020] [Indexed: 01/04/2023] Open
Abstract
Sea turtles can be considered a sentinel species for monitoring the health of marine ecosystems, acting, at the same time, as a carrier of microorganisms. Indeed, sea turtles can acquire the microbiota from their reproductive sites and feeding, contributing to the diffusion of antibiotic-resistant strains to uncontaminated environments. This study aims to unveil the presence of antibiotic-resistant bacteria in (i) loggerhead sea turtles stranded along the coast of Sicily (Mediterranean Sea), (ii) unhatched and/or hatched eggs, (iii) sand from the turtles’ nest and (iv) seawater. Forty-four bacterial strains were isolated and identified by conventional biochemical tests and 16S rDNA sequencing. The Gram-negative Aeromonas and Vibrio species were mainly found in sea turtles and seawater samples, respectively. Conversely, the Gram-positive Bacillus, Streptococcus, and Staphylococcus strains were mostly isolated from eggs and sand. The antimicrobial resistance profile of the isolates revealed that these strains were resistant to cefazolin (95.5%), streptomycin (43.2%), colistin and amoxicillin/clavulanic acid (34.1%). Moreover, metagenome analysis unveiled the presence of both antibiotic and heavy metal resistance genes, as well as the mobile element class 1 integron at an alarming percentage rate. Our results suggest that Caretta caretta could be considered a carrier of antibiotic-resistant genes.
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14
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Huff R, Inhoque Pereira R, Pissetti C, Mellender de Araújo A, Alves d’Azevedo P, Frazzon J, GuedesFrazzon AP. Antimicrobial resistance and genetic relationships of enterococci from siblings and non-siblings Heliconius erato phyllis caterpillars. PeerJ 2020; 8:e8647. [PMID: 32149028 PMCID: PMC7049460 DOI: 10.7717/peerj.8647] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Accepted: 01/27/2020] [Indexed: 11/25/2022] Open
Abstract
BACKGROUND Studies evaluating bacteria in insects can provide information about host-microorganism-environment interactions. The gut microbial community has a profound effect on different physiological functions of insects. Enterococcus spp. are part of the gut community in humans and other animals, as well as in insects. The presence and antimicrobial resistance profile of enterococci are well studied in different animals; however, data for Heliconius erato phyllis (Lepidoptera: Nymphalidae) do not yet exist. Therefore, the aims of this study were to evaluate the distribution of enterococcal species, their antimicrobial resistance profile and virulence genes, and the genetic relationships between enterococci isolated from fecal samples from sibling and non-sibling H. erato phyllis caterpillars collected from different sites in South Brazil. METHODS Three H. erato phyllis females were captured (two from a forest fragment and one from an urban area), and kept individually in open-air insectaries. Eggs were collected and caterpillars (siblings and non-siblings) were fed daily with Passiflora suberosa leaves. Fecal samples (n = 12) were collected from fifth-instar caterpillars, inoculated in selective medium, and 15 bacterial colonies were randomly selected from each sample. Enterococci were identified by PCR and MALDI-TOF, analyzed by disk diffusion antimicrobial susceptibility tests, and screened for resistance and virulence genes by PCR. The genetic relationships between the strains were determined using pulsed-field gel electrophoresis (PFGE). RESULTS A total of 178 enterococci strains were identified: E. casseliflavus (74.15%; n = 132), E. mundtii (21.34%; n = 38), E. faecalis (1.12%; n = 2) and Enterococcus sp. (3.37%; n = 6). High rates of resistance to rifampicin (56%) and erythromycin (31%) were observed; 120 (67.41%) of the isolates showed resistance to at least one antibiotic and six (3.37%) were multidrug-resistant.None of the erythromycin-resistant strains was positive for the erm(B) and msrC genes. The virulence genes esp, ace, and gelE were observed in 35%, 7%, and 1% of the strains, respectively. PFGE separated the enterococci into 22 patterns, four being composed of strains from sibling caterpillars. CONCLUSION Enterococcus casseliflavus was the dominant species in fecal samples of fifth-instar caterpillars. Resistant enterococci strains may be related to environmental pollution or the resistome. The PFGE analysis showed genetic relationships between some strains, suggesting that the enterococci isolated from fecal samples of the sibling caterpillars might have come from common sources, e.g., via diet (herbivory) and/or vertical transmission (through the egg surface). Further studies will be conducted to better understand the role of Enterococcus in the microbial community of the gastrointestinal tract of these insects, and the mechanisms involved in acquisition and maintenance of enterococci.
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Affiliation(s)
- Rosana Huff
- Institute of Basic Health Sciences, Department of Microbiology, Immunology and Parasitology, Federal University of Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Rebeca Inhoque Pereira
- Basic Health Sciences, Department of Microbiology, Health Sciences Federal University, Porto Alegre, Rio Grande do Sul, Brazil
| | - Caroline Pissetti
- Department of Veterinary Preventive Medicine, Federal University of Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Aldo Mellender de Araújo
- Institute of Biosciences, Genetic Department, Federal University of Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Pedro Alves d’Azevedo
- Basic Health Sciences, Department of Microbiology, Health Sciences Federal University, Porto Alegre, Rio Grande do Sul, Brazil
| | - Jeverson Frazzon
- Food Science Institute, Federal University of Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Ana Paula GuedesFrazzon
- Institute of Basic Health Sciences, Department of Microbiology, Immunology and Parasitology, Federal University of Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
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15
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Abstract
Enterococci are natural inhabitants of the intestinal tract in humans and many animals, including food-producing and companion animals. They can easily contaminate the food and the environment, entering the food chain. Moreover, Enterococcus is an important opportunistic pathogen, especially the species E. faecalis and E. faecium, causing a wide variety of infections. This microorganism not only contains intrinsic resistance mechanisms to several antimicrobial agents, but also has the capacity to acquire new mechanisms of antimicrobial resistance. In this review we analyze the diversity of enterococcal species and their distribution in the intestinal tract of animals. Moreover, resistance mechanisms for different classes of antimicrobials of clinical relevance are reviewed, as well as the epidemiology of multidrug-resistant enterococci of animal origin, with special attention given to beta-lactams, glycopeptides, and linezolid. The emergence of new antimicrobial resistance genes in enterococci of animal origin, such as optrA and cfr, is highlighted. The molecular epidemiology and the population structure of E. faecalis and E. faecium isolates in farm and companion animals is presented. Moreover, the types of plasmids that carry the antimicrobial resistance genes in enterococci of animal origin are reviewed.
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16
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Kanaan MHG. Antibacterial effect of ozonated water against methicillin-resistant Staphylococcus aureus contaminating chicken meat in Wasit Province, Iraq. Vet World 2018; 11:1445-1453. [PMID: 30532500 PMCID: PMC6247883 DOI: 10.14202/vetworld.2018.1445-1453] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2018] [Accepted: 08/21/2018] [Indexed: 01/27/2023] Open
Abstract
BACKGROUND AND AIM Methicillin-resistant Staphylococcus aureus (MRSA) is one of the most recognized "superbugs" and a common cause of community-associated and nosocomial infections; furthermore, when chicken meat is considered a good growth medium for S. aureus to make a plausible vehicle to propagate MRSA, then this study was conducted to evaluate the efficiency of ozonated water (0.5 ppm) in the elimination or reduction of MRSA contaminating fresh and frozen chicken meat sold in local markets in the Wasit Province. MATERIALS AND METHODS A total of 72 samples of fresh and frozen chicken meat were randomly collected from dissimilar native markets: Fresh chicken meat (n=32) and frozen chicken meat (n=40). Isolation and identification of MRSA isolates were conducted using standard bacteriological, biochemical, RapID™ Staph Plus System (Remel, R8311009), and latex agglutination tests such as Dry SPOT Staphytect Plus (Oxoid, DR0100M) and PBP2' Test Kit (Oxoid, DR0900A). The generation of ozone (O3) was carried out using O3 generator (A2Z/AQUA-6, USA), and its concentration (ppm) in water was determined using CHE-Mets®-Kit, USA. RESULTS A total of 39 (54.2%) of 72 fresh and frozen chicken meat were positive for S. aureus; of those 39 positive samples, 13 (33.3%) were identified as MRSA. The antibiotic sensitivity test results revealed that all MRSA isolates had multiple resistance to at least four antimicrobial agents for which these isolates had 12 antibiotic resistance patterns. Results of O3 treatment in MRSA isolate contaminating 13 of both fresh and frozen chicken meat samples showed that, after treatment with ozonated water (0.5 ppm/4°C), the overall negative samples were 23.1% and 69.2% for 30 and 45 min, respectively. The decrease in the percentage of positive samples was very significant from a public health perspective. Furthermore, the antimicrobial efficacy of ozonated water (0.5 ppm) on the reduction of the MRSA count (log10 colony-forming units [CFU]/ml) was assessed in four positive samples of fresh and frozen chicken meat, and the results revealed that, after treatments, the overall reduction was 2-4 log10 (CFU/ml) after 45 min. This reduction is highly significant from a public health perspective. CONCLUSION From the data obtained from this study, it can be concluded that fresh and frozen chicken meat sold in the different markets of Wasit Province was highly contaminated by S. aureus during the study period with a total prevalence of 54.2%; among those, 33.3% were recognized as MRSA. Under the conditions described in the present study, O3 at the concentration of 0.5 ppm is highly effective in reducing the number of MRSA-positive samples and the number decreased with increased exposure time to ozonated water at the same concentration. These findings indicated that O3 treatment might constitute the basis for an alternative method to reduce meat contamination with foodborne pathogens such as MRSA.
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Affiliation(s)
- Manal H. G. Kanaan
- Department of Nursing, Technical Institute of Suwaria, Middle Technical University, Baghdad, Iraq
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17
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Huescas CGY, Pereira RI, Prichula J, Azevedo PA, Frazzon J, Frazzon APG. Frequency of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs) in non-clinical Enterococcus faecalis and Enterococcus faecium strains. BRAZ J BIOL 2018; 79:460-465. [PMID: 30304253 DOI: 10.1590/1519-6984.183375] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2017] [Accepted: 01/16/2018] [Indexed: 11/21/2022] Open
Abstract
The fidelity of the genomes is defended by mechanism known as Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) systems. Three Type II CRISPR systems (CRISPR1- cas, CRISPR2 and CRISPR3-cas) have been identified in enterococci isolates from clinical and environmental samples. The aim of this study was to observe the distribution of CRISPR1-cas, CRISPR2 and CRISPR3-cas in non-clinical strains of Enterococcus faecalis and Enterococcus faecium isolates from food and fecal samples, including wild marine animals. The presence of CRISPRs was evaluated by PCR in 120 enterococci strains, 67 E. faecalis and 53 E. faecium. It is the first report of the presence of the CRISPRs system in E. faecalis and E. faecium strains isolated from wild marine animal fecal samples. The results showed that in non-clinical strains, the CRISPRs were more frequently detected in E. faecalis than in E. faecium. And the frequencies of CRISPR1-cas and CRISPR2 were higher (60%) in E. faecalis strains isolated from animal feces, compared to food samples. Both strains showed low frequencies of CRISPR3-cas (8.95% and 1.88%). In conclusion, the differences in the habitats of enterococcal species may be related with the results observe in distribution of CRISPRs systems.
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Affiliation(s)
- C G Y Huescas
- Programa de Pós-graduacao em Microbiologia Agricola e do Ambiente, Departamento de Microbiologia, Imunologia e Parasitologia, Universidade Federal do Rio Grande do Sul - UFRGS, Sarmento Leite, 500, sala 216, CEP 90050-170, Porto Alegre, RS, Brasil
| | - R I Pereira
- Laboraorio de Gram-positive, Universidade Federal de Ciências da Saúde de Porto Alegre - UFCSPA, Sarmento Leite, 245, sala 204, CEP 90050-170, Porto Alegre, RS, Brasil
| | - J Prichula
- Laboraorio de Gram-positive, Universidade Federal de Ciências da Saúde de Porto Alegre - UFCSPA, Sarmento Leite, 245, sala 204, CEP 90050-170, Porto Alegre, RS, Brasil
| | - P A Azevedo
- Laboraorio de Gram-positive, Universidade Federal de Ciências da Saúde de Porto Alegre - UFCSPA, Sarmento Leite, 245, sala 204, CEP 90050-170, Porto Alegre, RS, Brasil
| | - J Frazzon
- Instituto de Ciencias e Tecnologia de Alimentos, Universidade Federal do Rio Grande do Sul - UFRGS, Av. Bento Gonçalves, 9500, Prédio 443.212, Campus do Vale, CEP 91501-970, Porto Alegre, RS, Brasil
| | - A P G Frazzon
- Programa de Pós-graduacao em Microbiologia Agricola e do Ambiente, Departamento de Microbiologia, Imunologia e Parasitologia, Universidade Federal do Rio Grande do Sul - UFRGS, Sarmento Leite, 500, sala 216, CEP 90050-170, Porto Alegre, RS, Brasil
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18
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Grassotti TT, de Angelis Zvoboda D, da Fontoura Xavier Costa L, de Araújo AJG, Pereira RI, Soares RO, Wagner PGC, Frazzon J, Frazzon APG. Antimicrobial Resistance Profiles in Enterococcus spp. Isolates From Fecal Samples of Wild and Captive Black Capuchin Monkeys (S apajus nigritus) in South Brazil. Front Microbiol 2018; 9:2366. [PMID: 30356681 PMCID: PMC6189294 DOI: 10.3389/fmicb.2018.02366] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2018] [Accepted: 09/14/2018] [Indexed: 11/13/2022] Open
Abstract
The environment, human, and animals play an important role in the spread of antibiotic-resistant bacteria. Enterococci are members of the gastrointestinal tracts of humans and animals and represent important reservoirs of antibiotic resistance genes. Until today, few studies have examined antibiotic susceptibility in enterococci isolated from primates. Therefore, the present study investigated species distribution, antibiotic susceptibility, and resistance genes in enterococci isolated from wild and captive black capuchins monkeys (Sapajus nigritus) in Rio Grande do Sul, South Brazil. A total of 24 swabs/fecal samples were collected, including 19 from wild monkeys living in two forest fragments [São Sebastião do Caí (SSC) and Santa Cruz do Sul (SCS)], and five in captive [Parque Zoológico da Fundação Zoobotânica (ZOO)], between August 2016 and November 2017. Fifteen colonies were randomly selected from each sample. Enterococci were identified by MALDI-TOF, tested for susceptibility to 12 antibiotics; and screened for tet(S), tet(M), tet(L), msrC, and erm(B) genes by PCR. Two-hundred ninety-six enterococci were isolated (SSC n = 137; SCS n = 86; ZOO n = 73) and differences in Enterococcus species distribution were detected on three monkey groups, with low abundance in SCS (1 - D = 0.2), followed by ZOO (1 - D = 0.68), and SSC (1 - D = 0.73). The enterococci frequently recovered include the following: Enterococcus faecalis (42.6%), E. hirae (29.1%), and E. faecium (15.9%). Antibiotic-nonsusceptible was observed in 202 (67.9%) strains. The rate of non-susceptibility to rifampicin, tetracycline, erythromycin, nitrofurantoin, chloramphenicol, and ampicillin was 46%, 26%, 22% and 19%, 13%, 0.3%, and 0.3%, respectively. All strains were susceptible to vancomycin, streptomycin, gentamycin, and linezolid. Forty-three (14.52%) isolates were identified as multidrug resistant (MDR), and the highest number of MDR enterococci were E. faecium recovered from wild monkeys living close to a hospital and water treatment plant. Elevated rates of antibiotic resistance genes msrC and tet(L) were isolates from ZOO. In conclusion, differences in the frequency of enterococci species, antibiotic-nonsusceptible and antibiotic resistance genes in all groups of monkeys were identified. These data suggest that anthropogenic activities could have an impact in the resistome of primate gut enterococci communities.
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Affiliation(s)
- Tiela Trapp Grassotti
- Microbiology, Immunology, and Parasitology Department, Institute of Basic Health Sciences, Federal University of Rio Grande do Sul, Porto Alegre, Brazil
| | - Dejoara de Angelis Zvoboda
- Microbiology, Immunology, and Parasitology Department, Institute of Basic Health Sciences, Federal University of Rio Grande do Sul, Porto Alegre, Brazil
| | - Letícia da Fontoura Xavier Costa
- Microbiology, Immunology, and Parasitology Department, Institute of Basic Health Sciences, Federal University of Rio Grande do Sul, Porto Alegre, Brazil
| | - Alberto Jorge Gomes de Araújo
- Microbiology, Immunology, and Parasitology Department, Institute of Basic Health Sciences, Federal University of Rio Grande do Sul, Porto Alegre, Brazil
| | - Rebeca Inhoque Pereira
- Gram-Positive Cocci Laboratory, Federal University of Health Sciences of Porto Alegre, Porto Alegre, Brazil
| | - Renata Oliveira Soares
- Gram-Positive Cocci Laboratory, Federal University of Health Sciences of Porto Alegre, Porto Alegre, Brazil
| | | | - Jeverson Frazzon
- Institute of Food Science and Technology, Federal University of Rio Grande do Sul, Porto Alegre, Brazil
| | - Ana Paula Guedes Frazzon
- Microbiology, Immunology, and Parasitology Department, Institute of Basic Health Sciences, Federal University of Rio Grande do Sul, Porto Alegre, Brazil
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19
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Freitas ADARD, Faria AR, Pinto TDCA, Merquior VLC, Neves DM, Costa RDCD, Teixeira LM. Distribution of species and antimicrobial resistance among enterococci isolated from the fecal microbiota of captive blue-fronted parrot (Amazona aestiva) in Rio de Janeiro, Brazil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 615:1428-1437. [PMID: 29055593 DOI: 10.1016/j.scitotenv.2017.09.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2017] [Revised: 08/31/2017] [Accepted: 09/01/2017] [Indexed: 06/07/2023]
Abstract
Enterococcal strains recovered from fecal samples of captive blue-fronted parrots (Amazona aestiva) assisted at two wild animal screening centers in Rio de Janeiro, Brazil, were identified as Enterococcus hirae (the predominant species; 75.3%), followed by Enterococcus faecalis (17.3%), Enterococcus casseliflavus (4.8%), Enterococcus gallinarum (1.7%), and Enterococcus hermanniensis (0.9%). All strains were susceptible to linezolid and teicoplanin. Rates of nonsusceptibility (including resistant and intermediate categories) to other 16 antimicrobials tested varied from 69.3% to 0.4%, A considerable proportion (48.0%) of the strains was multidrug-resistant and diverse genetic determinants associated with antimicrobial resistance were identified. Tetracycline-resistant strains carried the tet(M) and/or tet(L) genes. Macrolides resistance was associated with the erm(B), erm(A) and mefA genes, while 43.2% of the isolates were negative for the investigated genes. High-level resistance to gentamicin associated with the aac(6')-le-aph(2″)-la gene was detected in one E. faecalis strain. The two strains presenting high-level resistance to streptomycin were negative for the ant(6')-Ia, ant(3')-Ia, ant(9')-Ia and ant(9')-Ib genes. The vat(D) gene was found in all the 47 quinupristin/dalfopristin resistant strains identified as non-E. faecalis. Analysis of PFGE profiles of E. hirae strains after restriction with SmaI demonstrated the occurrence of five clonal groups. The predominant E. hirae clone was distributed among birds in the two institutions, suggesting that this clone was well adapted to the host and environments investigated. The four clonal groups identified among E. faecalis were composed by small numbers of strains and, generally, restricted to birds in the same sector. The occurrence of enterococcal strains exhibiting antimicrobial resistance traits and carrying genetic determinants that represent potential threats to the health of both humans and animals, in the intestinal microbiota of A. aestiva, highlights the need for additional monitoring studies to elucidate the population structure and the dynamics of transmission of these microorganisms among animals, humans and the environment.
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Affiliation(s)
| | - Adriana Rocha Faria
- Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil; Departamento de Microbiologia, Imunologia e Parasitologia, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| | | | - Vânia Lúcia Carreira Merquior
- Departamento de Microbiologia, Imunologia e Parasitologia, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| | - Daniel Marchesi Neves
- Centro de Triagem de Animais Silvestres do Rio de Janeiro (CETAS-RJ), Seropédica, RJ, Brazil
| | | | - Lúcia Martins Teixeira
- Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil.
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20
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Affiliation(s)
- Ana P. G. Frazzon
- Microbiology; Immunology and Parasitology Department; Federal University of Rio Grande do Sul; Porto Alegre-RS 90040-060 Brazil
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Medeiros AW, Blaese Amorim D, Tavares M, de Moura TM, Franco AC, d'Azevedo PA, Frazzon J, Frazzon APG. Enterococcus species diversity in fecal samples of wild marine species as determined by real-time PCR. Can J Microbiol 2016; 63:129-136. [PMID: 27991828 DOI: 10.1139/cjm-2016-0427] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Analyses using culture-independent molecular techniques have improved our understanding of microbial composition. The aim of this work was to identify and quantify enterococci in fecal samples of wild marine species using real-time quantitative PCR. Seven Enterococcus species were examined in fecal DNA of South American fur seals (Arctocephalus australis), Subantarctic fur seals (Arctocephalus tropicalis), green turtles (Chelonia mydas), Magellanic penguins (Spheniscus magellanicus), snowy-crowned tern (Sterna trudeaui), white-backed stilt (Himantopus melanurus), white-chinned petrels (Procellaria aequinoctialis), red knot (Calidris canutus), and black-browed albatross (Thalassarche melanophris). All Enterococcus species evaluated were detected in all fecal samples of wild marine species, with a concentration ranging between 106 and 1012 copies/ng of total DNA. Differences in the enterococci distribution were observed. Enterococcus faecalis and Enterococcus mundtii were most abundant in marine mammals. Enterococcus faecalis was frequent in green turtle, Magellanic penguin, snowy-crowned tern, red knot, and black-browed albatross. Enterococcus hirae and Enterococcus gallinarum showed elevated occurrence in white-backed stilt, and Enterococcus faecium in white-chinned petrel. This study showed highest diversity of enterococci in feces of wild marine species than currently available data, and reinforced the use of culture-independent analysis to help us to enhance our understanding of enterococci in gastrointestinal tracts of wild marine species.
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Affiliation(s)
- Aline Weber Medeiros
- a Microbiology, Immunology, and Parasitology Department, Federal University of Rio Grande do Sul, Sarmento Leite, 500, CEP 90050-170, Porto Alegre, RS, Brazil
| | - Derek Blaese Amorim
- b Center for Coastal Studies, Limnology and Marine, Institute of Biosciences, Federal University of Rio Grande do Sul, Av. Tramandaí, 976, CEP 95625-000, Imbé, RS, Brazil
| | - Maurício Tavares
- b Center for Coastal Studies, Limnology and Marine, Institute of Biosciences, Federal University of Rio Grande do Sul, Av. Tramandaí, 976, CEP 95625-000, Imbé, RS, Brazil
| | - Tiane Martin de Moura
- c Department of Nutrition, Federal University of Pelotas, Rua Gomes Carneiro, 1 - Centro, CEP 96010-610, Pelotas, RS, Brazil
| | - Ana Claudia Franco
- a Microbiology, Immunology, and Parasitology Department, Federal University of Rio Grande do Sul, Sarmento Leite, 500, CEP 90050-170, Porto Alegre, RS, Brazil
| | - Pedro Alves d'Azevedo
- d Gram-positive Coccus Laboratory, Federal University of Health Sciences of Porto Alegre, Sarmento Leite, 245, CEP 90050-170, Porto Alegre, RS, Brazil
| | - Jeverson Frazzon
- e Food Science Institute, Federal University of Rio Grande do Sul, Av. Bento Gonçalves 9500 - Campus do Vale - Prédio 443.212, CEP 91501-970, Porto Alegre, RS, Brazil
| | - Ana Paula Guedes Frazzon
- a Microbiology, Immunology, and Parasitology Department, Federal University of Rio Grande do Sul, Sarmento Leite, 500, CEP 90050-170, Porto Alegre, RS, Brazil
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22
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Prichula J, Pereira RI, Wachholz GR, Cardoso LA, Tolfo NCC, Santestevan NA, Medeiros AW, Tavares M, Frazzon J, d'Azevedo PA, Frazzon APG. Resistance to antimicrobial agents among enterococci isolated from fecal samples of wild marine species in the southern coast of Brazil. MARINE POLLUTION BULLETIN 2016; 105:51-57. [PMID: 26952995 DOI: 10.1016/j.marpolbul.2016.02.071] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2015] [Revised: 02/25/2016] [Accepted: 02/26/2016] [Indexed: 06/05/2023]
Abstract
The purpose of this study was to evaluate species distribution, antimicrobial resistance profiles, and presence of resistance genes in enterococci isolated from fecal samples of wild marine species, including seabirds (n=12), sea turtles (n=8), and mammals (n=3) found alive or dead in southern coast of Brazil. Enterococci were classified based on phenotypic and genotypic characteristics, tested for antibiotic susceptibility, and the presence of tet(S), tet(M), tet(L), mrsC, and erm(B) genes by PCR. Enterococcus faecalis and Enterococcus faecium were the most common species. Single (37.09%), double (25.80%), and multiple (16.12%) antibiotic resistance patterns were observed. Resistance to rifampicin occurred most frequently. The msrC, tet(M), and/or tet(L) genes were detected in 60.15%, 73.07%, and 23.07% of the resistant strains, respectively. In conclusion, the presence of antibiotic resistant strains in these species could be related to food web interactions and aquatic pollutants or linked to environmental resistome.
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Affiliation(s)
- Janira Prichula
- Microbiology, Immunology and Parasitology Department, Federal University of Rio Grande do Sul (UFRGS), Sarmento Leite 500, room 158, 90050-170, Porto Alegre, RS, Brazil; Gram-positive Coccus Laboratory, Federal University of Health Sciences of Porto Alegre (UFCSPA), Sarmento Leite 245, room 204, 90050-170, Porto Alegre, RS, Brazil
| | - Rebeca Inhoque Pereira
- Microbiology, Immunology and Parasitology Department, Federal University of Rio Grande do Sul (UFRGS), Sarmento Leite 500, room 158, 90050-170, Porto Alegre, RS, Brazil; Gram-positive Coccus Laboratory, Federal University of Health Sciences of Porto Alegre (UFCSPA), Sarmento Leite 245, room 204, 90050-170, Porto Alegre, RS, Brazil
| | - Guilherme Raffo Wachholz
- Gram-positive Coccus Laboratory, Federal University of Health Sciences of Porto Alegre (UFCSPA), Sarmento Leite 245, room 204, 90050-170, Porto Alegre, RS, Brazil
| | - Leonardo Almansa Cardoso
- Microbiology, Immunology and Parasitology Department, Federal University of Rio Grande do Sul (UFRGS), Sarmento Leite 500, room 158, 90050-170, Porto Alegre, RS, Brazil
| | - Neidimar Cezar Correa Tolfo
- Gram-positive Coccus Laboratory, Federal University of Health Sciences of Porto Alegre (UFCSPA), Sarmento Leite 245, room 204, 90050-170, Porto Alegre, RS, Brazil
| | - Naiara Aguiar Santestevan
- Microbiology, Immunology and Parasitology Department, Federal University of Rio Grande do Sul (UFRGS), Sarmento Leite 500, room 158, 90050-170, Porto Alegre, RS, Brazil
| | - Aline Weber Medeiros
- Microbiology, Immunology and Parasitology Department, Federal University of Rio Grande do Sul (UFRGS), Sarmento Leite 500, room 158, 90050-170, Porto Alegre, RS, Brazil
| | - Maurício Tavares
- Center for Coastal Studies, Limnology and Marine (CECLIMAR), Institute of Biosciences, UFRGS. Av. Tramandaí, 976, 95625-000, Imbé, RS, Brazil
| | - Jeverson Frazzon
- Food Science Institute, UFRGS, Av. Bento Gonçalves 9500 - Campus do Vale - Prédio 443.212, 91501-970, Porto Alegre, RS, Brazil
| | - Pedro Alves d'Azevedo
- Gram-positive Coccus Laboratory, Federal University of Health Sciences of Porto Alegre (UFCSPA), Sarmento Leite 245, room 204, 90050-170, Porto Alegre, RS, Brazil
| | - Ana Paula Guedes Frazzon
- Microbiology, Immunology and Parasitology Department, Federal University of Rio Grande do Sul (UFRGS), Sarmento Leite 500, room 158, 90050-170, Porto Alegre, RS, Brazil.
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Complete Genome Sequence of Enterococcus faecalis Strain P8-1 Isolated from Wild Magellanic Penguin (Spheniscus magellanicus) Feces on the South Coast of Brazil. GENOME ANNOUNCEMENTS 2016; 4:4/1/e01531-15. [PMID: 26769928 PMCID: PMC4714110 DOI: 10.1128/genomea.01531-15] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Enterococcus faecalis strains have a ubiquitous nature that allows them to survive in different niches. Studies involving enterococci isolated from marine animals are scarce. Therefore, in this study, we report the complete genome sequence of E. faecalis strain P8-1 isolated from feces of a Magellanic penguin on the south coast of Brazil.
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