Response of plasma membrane H+-ATPase in rice (Oryza sativa) seedlings to simulated acid rain

Unraveling the underlying mechanisms of biochemical, physiological, and growth responses of two pea (Pisum sativum L.) cultivars under simulated acid rain-induced oxidative stress

The current experiment was designed to evaluate the ramifications of simulated acid rain (SAR) on two pea (Pisum sativum L.) cultivars, Kashi Samridhi (Samridhi) and Kashi Nandini (Nandini), to decipher the intraspecific variations in defence mechanism considering the current scenario of rapid anthropogenic activities leading to increase in rain acidity. The pea cultivars were subjected to SAR of pH 7 (Control), 5.6, 5.0, and 4.5 under field conditions. SAR increased active oxygen species and malondialdehyde content due to increased lipid peroxidation in both cultivars; however, the increment intensity was more remarkable in Samridhi at the later growth stage. Ascorbic acid, thiol, and flavonoids were significantly increased in cultivar Nandini, along with increased peroxidase and superoxide dismutase activities. Total phenolics, glutathione reductase, and ascorbate peroxidase activities were enhanced considerably in Samridhi than in Nandini under SAR treatments. Higher stomatal density and stomatal size in Samridhi prompted greater acidic particles influx which further damaged the chloroplast and mitochondria. The present study concludes that cultivar Nandini is more proficient in inducing defence responses by elevating non-enzymatic antioxidants than Samridhi. Non-enzymatic linked defence mechanisms are more metabolically expensive, leading to less biomass accumulation in Nandini. The study depicted that innate defence responses, particularly the role of non-enzymatic antioxidants, governed the sensitivity level of cultivars towards SAR stress. Further, findings also contribute to bridging the knowledge gap regarding the responses of tropical and subtropical crops to acid rain.

Supplementary Information

The online version contains supplementary material available at 10.1007/s12298-024-01494-x.

The asymmetric expression of plasma membrane H+-ATPase family genes in response to pulvinus-driven leaf phototropism movement in Vitis vinifera

Phototropism movement is crucial for plants to adapt to various environmental changes. Plant P-type H+-ATPase (HA) plays diverse roles in signal transduction during cell expansion, regulation of cellular osmotic potential and stomatal opening, and circadian movement. Despite numerous studies on the genome-wide analysis of Vitis vinifera, no research has been done on the P-type H+-ATPase family genes, especially concerning pulvinus-driven leaf movement. In this study, 55 VvHAs were identified and classified into nine distinct subgroups (1 to 9). Gene members within the same subgroups exhibit similar features in motif, intron/exon, and protein tertiary structures. Furthermore, four pairs of genes were derived by segmental duplication in grapes. Cis-acting element analysis identified numerous light/circadian-related elements in the promoters of VvHAs. qRT-PCR analysis showed that several genes of subgroup 7 were highly expressed in leaves and pulvinus during leaf movement, especially VvHA14, VvHA15, VvHA16, VvHA19, VvHA51, VvHA52, and VvHA54. Additionally, we also found that the VvHAs genes were asymmetrically expressed on both sides of the extensor and flexor cell of the motor organ, the pulvinus. The expression of VvHAs family genes in extensor cells was significantly higher than that in flexor cells. Overall, this study serves as a foundation for further investigations into the functions of VvHAs and contributes to the complex mechanisms underlying grapevine pulvinus growth and development.

Role of root plasma membrane H+-ATPase in enhancing Cucumis sativus adaptation to microcystins

Microcystins (MCs) are the most widespread and hazardous cyanotoxins posing a huge threat to agro-ecosystem by irrigation. Some adaptive metabolisms can be initiated at the cellular and molecular levels of plant to survive environmental change. To find ways to improve plant tolerance to MCs after recognizing adaptive mechanism in plant, we studied effects of MCs on root morphology, mineral element contents, root activity, H+-ATPase activity, and its gene expression level in cucumber during exposure and recovery (without MCs) periods. After being exposed to MCs (1, 10, 100 and 1000 μg L-1) for 7 days, we found 1 μg L-1 MCs did not affect growth and mineral elements in cucumber. MCs at 10 μg ·L-1 increased root activity and H+-ATPase activity partly from upregulation of genes (CsHA2, CsHA3, CsHA8, and CsHA9) expression, to promote nutrient uptake. Then, the increase in NO3-, Fe, Zn, and Mn contents could contribute to maintaining root growth and morphology. Higher concentration MCs (100 or 1000 µg L-1) inhibited root activity and H+-ATPase activity by downregulating expression of genes (CsHA2, CsHA3, CsHA4, CsHA8, CsHA9, and CsHA10), decreased contents of nutrient elements except Ca largely, and caused root growing worse. After a recovery, the absorption activity and H+-ATPase activity in cucumber treated with10 μg L-1 MCs were closed to the control whereas all parameters in cucumber treated 1000 μg L-1 MCs were even worse. All results indicate that the increase in H+-ATPase activity can enhance cucumber tolerance to MC stress by regulating nutrient uptake, especially when the MCs occur at low concentrations.

Ketoprofen exposure perturbs nitrogen assimilation and ATP synthesis in rice roots: An integrated metabolome and microbiome analysis

Ketoprofen, a commonly used non-steroidal anti-inflammatory drug (NSAID), can enter farmland environments via sewage irrigation and manure application and is toxic to plants. However, there have been relatively few studies on the association of ketoprofen with nitrogen (N) assimilation and metabolic responses in plants. Accordingly, the goal of this study was to investigate the effects of ketoprofen on ATP synthesis and N assimilation in rice roots. The results showed that with increasing ketoprofen concentration, root vitality, respiration rate, ATP content, and H+-ATPase activity decreased and plasma membrane permeability increased. The expressions of OSA9, a family III H+-ATPase gene, and OSA6 and OSA10, family IV genes, were upregulated, indicating a response of the roots to ketoprofen. Nitrate, ammonium, and free amino acids content decreased with increased ketoprofen. The levels of enzymes involved in N metabolism, namely nitrate reductase, nitrite reductase, glutamine synthetase, glutamate synthetase, and glutamate dehydrogenase, also decreased under ketoprofen treatment. Principal component analysis revealed that ketoprofen treatment can significantly affect energy synthesis and nitrogen assimilation in rice roots, while these effects can be alleviated by the antioxidant response. Most of the metabolite contents increased, including amino acids, carbohydrates, and secondary metabolites. Key metabolic pathways, namely substance synthesis and energy metabolism, were found to be disrupted. Microbiome analysis showed that community diversity and richness of rice root microorganisms in solution increased with increasing levels of ketoprofen treatment, and the microbial community structure and metabolic pathways significantly changed. The results of this study provides new insights into the response of rice roots to ketoprofen.

Metabolomic analysis reveals the impact of ketoprofen on carbon and nitrogen metabolism in rice (Oryza sativa L.) seedling leaves

Pharmacologically active compounds (PACs) are becoming common pollutants in the natural environment, posing potential risks to crop quality; however, the toxic effects and metabolic changes that they cause in agricultural plants remain unclear. Here, we investigated the effects of ketoprofen on respiration rate, ATP synthesis, carbon and nitrogen metabolism, and metabolomics in rice seedling leaves. The results showed that ketoprofen treatment adversely affected the respiration rate, ATP content, H⁺-ATPase activity and induced changes in the contents of carbon assimilation products (soluble sugar, reducing sugar, sucrose, and starch) and the activities of key enzymes in carbon metabolism (sucrose synthase (SS), sucrose phosphate synthase (SPS), and sucrose invertase (InV)). The contents of nitrate, ammonium, and free amino acids, and the activities of key enzymes involved in nitrogen metabolism (nitrate reductase (NR), nitrite reductase (NiR), glutamine synthetase (GS), glutamate synthase (GOGAT), and glutamate dehydrogenase (GDH)) were also affected in a concentration-dependent manner. Metabolomics analysis showed that ketoprofen disturbed the type and content of metabolites (amino acids, carbohydrates, and secondary metabolites) to varying degrees and perturbed key metabolic pathways (substance synthesis and energy metabolism), ultimately resulting in the reduction of rice seedling biomass. This study provides important information and a useful reference for the accurate assessment of the environmental risks of PACs.

Global Trends of Acidity in Rainfall and Its Impact on Plants and Soil

Due to its deleterious and large-scale effects on the ecosystem and long-range transboundary nature, acid rain has attracted the attention of scientists and policymakers. Acid rain (AR) is a prominent environmental issue that has emerged in the last hundred years. AR refers to any form of precipitation leading to a reduction in pH to less than 5.6. The prime reasons for AR formation encompass the occurrence of sulfur dioxide (SO₂), nitrogen oxides (NO_x), ozone (O₃), and organic acids in air produced by natural as well as anthropogenic activities. India, the top SO₂ emitter, also shows a continuous increase in NO₂ level responsible for AR formation. The plants being immobile unavoidably get exposed to AR which impacts the natural surrounding negatively. Plants get affected directly by AR due to reductions in growth, productivity, and yield by damaging photosynthetic mechanisms and reproductive organs or indirectly by affecting underground components such as soil and root system. Genes that play important role in plant defense under abiotic stress gets also modulated in response to acid rain. AR induces soil acidification, and disturbs the balance of carbon and nitrogen metabolism, litter properties, and microbial and enzymatic activities. This article overviews the factors contributing to AR, and outlines the past and present trends of rainwater pH across the world, and its effects on plants and soil systems.

Closed-loop evaluation on potential of three oil crops in remediation of Cd-contaminated soil

Cd-contaminated farmlands threaten food security and safety by inhibiting crop growth and Cd accumulating in edible parts. Phytoremediation is a promising option to remove Cd from farmland soil. An ideal option is to remediate Cd and produce crops simultaneously on the contaminated soil. Therefore, we chose widely planted oil crops (soybean, sunflower and rape) as experimental materials, cultured in pots filled with soils contaminated with different concentrations (10, 20, 50, and 100 mg kg^-1) Cd till harvest, and then took a closed-loop method to evaluate the remediation potential of the three oil crops, including the remediating ability, yield, and quality of seeds and environmental risk of pyrolytic biochar. The results show that the order of Cd accumulation capacity in the three oil crops was sunflower > rape > soybean. The yield and quality of the three oil crops were decreased by being treated with different concentrations of Cd. In addition, the order for a decreased degree in yield of the three oil crops was sunflower < rape < soybean, and the order for a decreased degree in protein and fat content was sunflower < soybean < rape. The potential risk of seeds of the three oil crops as food/feed was sunflower/soybean < soybean/sunflower < rape. After pyrolysis of harvested three oil crops, the order for leaching toxicity/leaching potential was sunflower-biochar < soybean-biochar/rape-biochar < rape-biochar/soybean-biochar. All three oil crops could remediate Cd-contaminated soils, and their seeds could generate economic value. Closed-loop evaluation of sunflower proved it might be a good option for removing Cd from farmland soil.

Regulation of Cytosolic pH: The Contributions of Plant Plasma Membrane H+-ATPases and Multiple Transporters

Cytosolic pH homeostasis is a precondition for the normal growth and stress responses in plants, and H+ flux across the plasma membrane is essential for cytoplasmic pH control. Hence, this review focuses on seven types of proteins that possess direct H+ transport activity, namely, H+-ATPase, NHX, CHX, AMT, NRT, PHT, and KT/HAK/KUP, to summarize their plasma-membrane-located family members, the effect of corresponding gene knockout and/or overexpression on cytosolic pH, the H+ transport pathway, and their functional regulation by the extracellular/cytosolic pH. In general, H+-ATPases mediate H+ extrusion, whereas most members of other six proteins mediate H+ influx, thus contributing to cytosolic pH homeostasis by directly modulating H+ flux across the plasma membrane. The fact that some AMTs/NRTs mediate H+-coupled substrate influx, whereas other intra-family members facilitate H+-uncoupled substrate transport, demonstrates that not all plasma membrane transporters possess H+-coupled substrate transport mechanisms, and using the transport mechanism of a protein to represent the case of the entire family is not suitable. The transport activity of these proteins is regulated by extracellular and/or cytosolic pH, with different structural bases for H+ transfer among these seven types of proteins. Notably, intra-family members possess distinct pH regulatory characterization and underlying residues for H+ transfer. This review is anticipated to facilitate the understanding of the molecular basis for cytosolic pH homeostasis. Despite this progress, the strategy of their cooperation for cytosolic pH homeostasis needs further investigation.

Effects of acid rain on plant growth: A meta-analysis

Anthropogenic driven acid gases emission has caused acid rain in many regions globally. Although efforts have been made to assess the effects of acid rain on terrestrial ecosystems, a systematic assessment of growth-related traits across plant aboveground and belowground is lacking. Hence, we performed a phylogenetically controlled meta-analysis of 755 observations from 69 independent studies to quantify the effects of acid rain on six growth-related traits of plant. We estimated the inhibitory effects of acid rain on plant growth in general and found that aboveground and belowground plant parts responded differently. The acidity of acid rain and acid rain interval had direct modulation effects on plant growth. We also found that there were interactions between acid rain pH and other acid rain characteristics (i.e., acid rain interval, mole ratio of S:N, and acid rain rate) and experimental characteristics (i.e., initial soil pH and plant exposure part), indicating that there were pH-dependent interaction patterns. Thus, an effective approach to evaluate and predict the effects of acid rain on plant growth is to fully consider the direct effects of acid rain pH and the interactions between acid rain pH and other factors.

Acid or base? How do plants regulate the ecology of their phylloplane?

Plants interface with and modify the external environment across their surfaces, and in so doing, can control or mitigate the impacts of abiotic stresses and also mediate their interactions with other organisms. Botanically, it is known that plant roots have a multi-faceted ability to modify rhizosphere conditions like pH, a factor with a large effect on a plant's biotic interactions with microbes. But plants can also modify pH levels on the surfaces of their leaves. Plants can neutralize acid rain inputs in a period of hours, and either acidify or alkalinize the pH of neutral water droplets in minutes. The pH of the phylloplane-that is, the outermost surface of the leaf-varies across species, from incredibly acidic (carnivorous plants: as low as pH 1) to exceptionally alkaline (species in the plant family, Malvaceae, up to pH 11). However, most species mildly acidify droplets on the phylloplane by 1.5 orders of magnitude in pH. Just as rhizosphere pH helps shape the plant microbiome and is known to influence belowground interactions, so too can phylloplane pH influence aboveground interactions in plant canopies. In this review, we discuss phylloplane pH regulation from the physiological, molecular, evolutionary, and ecological perspectives and address knowledge gaps and identify future research directions.

Calcium regulates antioxidative isozyme activity for enhancing rice adaption to acid rain stress

Acid rain, as a typical abiotic stress, damages plant growth and production. Calcium (Ca) mediates plant growth and links the signal transduction in plants for adapting to abiotic stresses. To understand the effect of Ca²⁺ on plant adaptable response to acid rain, we investigated changes in activities and gene expression of antioxidative enzymes and fatty acid composition of membrane lipid in rice seedlings treated with exogenous Ca²⁺ (5 mM) or/and simulated acid rain (SAR, pH 3.5 / 2.5). Exogenous Ca²⁺ enhanced activities of superoxide dismutase, catalase and peroxidase isozymes in rice leaves under SAR stress by promoting activation of existing isoforms and up-regulation of Cu/Zn-SOD1, Cu/Zn-SOD2, Cu/Zn-SOD3, CAT1, CAT2 and POD1. Compared to SAR treatment alone, exogenous Ca²⁺ alleviated SAR-induced oxidative damage to cell membrane by enhancing antioxidative capacity, as shown by the decrease in concentrations of H₂O₂, O₂^- and malondialdehyde in rice leaves. Meanwhile, Ca²⁺ alleviated SAR-induced decrease in unsaturation of membrane lipid for maintaining membrane fluidity. Finally, exogenous Ca²⁺ alleviated SAR-induced inhibition on relative growth rate of rice. Therefore, Ca²⁺ could play a role in regulating activities of antioxidative enzymes as well as maintaining unsaturation of membrane lipid for enhancing tolerance in rice seedlings to acid rain stress.

Genome-Wide Association Study (GWAS) to Identify Salt-Tolerance QTLs Carrying Novel Candidate Genes in Rice During Early Vegetative Stage

BACKGROUND

Rice is considered as a salt-sensitive plant, particularly at early vegetative stage, and its production is suffered from salinity due to expansion of salt affected land in areas under cultivation. Hence, significant increase of rice productivity on salinized lands is really necessary. Today genome-wide association study (GWAS) is a method of choice for fine mapping of QTLs involved in plant responses to abiotic stresses including salinity stress at early vegetative stage. In this study using > 33,000 SNP markers we identified rice genomic regions associated to early stage salinity tolerance. Eight salinity-related traits including shoot length (SL), root length (RL), root dry weight (RDW), root fresh weight (RFW), shoot fresh weight (SFW), shoot dry weight (SDW), relative water content (RWC) and TW, and 4 derived traits including SL-R, RL-R, RDW-R and RFW-R in a diverse panel of rice were evaluated under salinity (100 mM NaCl) and normal conditions in growth chamber. Genome-wide association study (GWAS) was applied based on MLM(+Q + K) model.

RESULTS

Under stress conditions 151 trait-marker associations were identified that were scattered on 10 chromosomes of rice that arranged in 29 genomic regions. A genomic region on chromosome 1 (11.26 Mbp) was identified which co-located with a known QTL region SalTol1 for salinity tolerance at vegetative stage. A candidate gene (Os01g0304100) was identified in this region which encodes a cation chloride cotransporter. Furthermore, on this chromosome two other candidate genes, Os01g0624700 (24.95 Mbp) and Os01g0812000 (34.51 Mbp), were identified that encode a WRKY transcription factor (WRKY 12) and a transcriptional activator of gibberellin-dependent alpha-amylase expression (GAMyb), respectively. Also, a narrow interval on the same chromosome (40.79-42.98 Mbp) carries 12 candidate genes, some of them were not so far reported for salinity tolerance at seedling stage. Two of more interesting genes are Os01g0966000 and Os01g0963000, encoding a plasma membrane (PM) H⁺-ATPase and a peroxidase BP1 protein. A candidate gene was identified on chromosome 2 (Os02g0730300 at 30.4 Mbp) encoding a high affinity K⁺ transporter (HAK). On chromosome 6 a DnaJ-encoding gene and pseudouridine synthase gene were identified. Two novel genes on chromosome 8 including the ABI/VP1 transcription factor and retinoblastoma-related protein (RBR), and 3 novel genes on chromosome 11 including a Lox, F-box and Na⁺/H⁺ antiporter, were also identified.

CONCLUSION

Known or novel candidate genes in this research were identified that can be used for improvement of salinity tolerance in molecular breeding programmes of rice. Further study and identification of effective genes on salinity tolerance by the use of candidate gene-association analysis can help to precisely uncover the mechanisms of salinity tolerance at molecular level. A time dependent relationship between salt tolerance and expression level of candidate genes could be recognized.

The fungal endophyte Epichloë gansuensis increases NaCl-tolerance in Achnatherum inebrians through enhancing the activity of plasma membrane H+-ATPase and glucose-6-phosphate dehydrogenase

Salt stress negatively affects plant growth, and the fungal endophyte Epichloëgansuensis increases the tolerance of its host grass species, Achnatherum inebrians, to abiotic stresses. In this work, we first evaluated the effects of E. gansuensis on glucose-6-phosphate dehydrogenase (G6PDH) and plasma membrane (PM) H⁺-ATPase activity of Achnatherum inebrians plants under varying NaCl concentrations. Our results showed that the presence of E. gansuensis increased G6PDH, PM H⁺-ATPase, superoxide dismutase and catalase activity to decrease O₂^•-, H₂O₂ and Na⁺ contents in A. inebrians under NaCl stress, resulting in enhanced salt tolerance. In addition, the PM NADPH oxidase activity and NADPH/NADP⁺ ratios were all lower in A. inebrians with E. ganusensis plants than A. inebrians plants without this endophyte under NaCl stress. In conclusion, E. gansuensis has a positive role in improving host grass yield under NaCl stress by enhancing the activity of G6PDH and PM H⁺-ATPase to decrease ROS content. This provides a new way for the selection of stress-resistant and high-quality forage varieties by the use of systemic fungal endophytes.

Comparison of plasma membrane H+-ATPase response to acid rain stress between rice and soybean

Acid rain is a global environmental issue due to inhibiting severely plant growth and productivity. To discover the tolerant mechanism in plants under acid rain stress, we studied the difference in response of two crops (rice and soybean) to simulated acid rain (pH 5.0 ~ 2.5) at growth and physiological, biochemical and molecular levels during exposure and recovery periods by hydroponics. By analyzing the change in relative growth rate, chlorophyll content and plasma permeability in rice and soybean, we found that rice could tolerate acid rain above pH 3.0 whereas soybean could tolerate acid rain above pH 4.5. By RT-PCR analyses, immunoprecipitation and enzyme kinetics study, we observed that pH 4.5 acid rain promoted the transcriptional expression of H+-ATPase genes and the phosphorylation of H+-ATPase and increased H+-ATPase activity in the two crops for resisting acid stress. The increased degree in soybean was larger than that in rice. Acid rain at pH 3.0 still promoted the transcription regulation to maintain H+-ATPase activity higher in rice for resisting stress but caused irreversible inhibition on express of H+-ATPase and decreased H+-ATPase activity in soybean. All results suggest that the different tolerance in rice and soybean to acid rain stress could be associated with difference in plasma membrane H+-ATPase at transcriptional regulation, post-translational modification and the substrate affinity.

Melatonin, glutathione and thiourea attenuates lead and acid rain-induced deleterious responses by regulating gene expression of antioxidants in Trigonella foenum graecum L

Lead and acid rain are important abiotic stress factors that limit the growth, development, metabolic activity and yield of the crops. Melatonin (MT; an indoleamine molecule), glutathione (GSH; free thiol tripeptide) and thiourea (TU; non physiological thiol based ROS scavenger) have been known to mediate several physiological, biochemical and molecular processes in plants under different kinds of environmental threats. However, the roles of MT, GSH and TU in stress tolerance against combined effect of lead and simulated acid rain (SAR) remains inexpressible. In this study, we investigated the response of Trigonella foenum graecum L. (Fenugreek) to combined application of lead (1200 ppm) and SAR (pH 3.5), and the potential roles of MT (50 μM), GSH (1 mM) and TU (3 mM) in enhancing lead and SAR stress tolerance of Fenugreek. The results showed that co-application of each MT, GSH and TU along with lead and SAR improved the growth and development of seedlings. Moreover, MT, GSH and TU treatments stabilized the cell membrane integrity, reduced ROS accumulation [superoxide radical (O₂-) and hydrogen peroxide (H₂O₂)], malondialdehyde (MDA) content, lipoxygenase (LOX) activity and, enhanced protein accumulation and up-regulated the gene expressions of catalase (CAT) and superoxide dismutase (SOD) significantly. Furthermore, the present work provides strong evidence regarding protective roles of MT, GSH and TU against oxidative stress resulted from lead and SAR stress in Fenugreek. Considering these observations, MT, GSH and TU can be utilized as efficient ROS scavengers, for improving growth and increasing antioxidant capacity in lead and SAR stressed seedlings.

Effect of exogenous calcium on growth, nutrients uptake and plasma membrane H+-ATPase and Ca2+-ATPase activities in soybean (Glycine max) seedlings under simulated acid rain stress

Calcium (Ca) is one of essential elements for plant growth and development, and also plays a role in regulating plant cell physiology and cellular response to the environment. Here, we studied whether calcium played a role in enhancing tolerance of plants to acid rain stress by hydroponics and simulating acid rain stress. Our results show that acid rain (pH 4.5/pH 3.0) caused decreases in dry weight biomass, chlorophyll content and uptake of nutrients elements (NO3-, P, K, Mg, Zn and Mo) and an increase in membrane permeability of root. However, all parameters in soybean treated with exogenous calcium (5 mM) and acid rain at pH 4.5 were closed to the control levels. In addition, exogenous calcium (5 mM) alleviated the inhibition induced by pH 3.0 acid rain on the activity of plasma membranes H+-ATPase and the expression of GmPHA1 at transcriptional level, being benefiting to maintaining uptake of nutrients (NO3-, P, K, Mg, and Zn), and then lower the decrease in dry weight biomass and chlorophyll content. After a 5-day recovery (without acid rain stress), all parameters in soybean treated with acid rain at pH 3.0 and exogenous calcium were still worse than those of the control, but obviously better than those treated with acid rain at pH 3.0. Higher activity of plasma membrane H+-ATPase in soybean treated with acid rain at pH 3.0 and exogenous calcium was good to uptake of nutrients and promoted the recovery of soybean growth, compared with soybean treated with acid rain at pH 3.0. In conclusion, exogenous calcium could alleviate the inhibition caused by acid rain on soybean growth by increasing the activity of plasma membrane H+-ATPase for providing driving force to nutrient absorption, and its regulating effect was limited by intensity of acid rain. Furthermore, the application of exogenous calcium can be one of ways to alleviate the damage caused by acid rain to plants.

Effect of simulated acid rain on CO2, CH4 and N2O fluxes and rice productivity in a subtropical Chinese paddy field

The need of more food production, an increase in acidic deposition and the large capacity of paddy to emit greenhouse gases all coincide in several areas of China. Studying the effects of acid rain on the emission of greenhouse gases and the productivity of rice paddies are thus important, because these effects are currently unknown. We conducted a field experiment for two rice croppings (early and late paddies independent experiment) to determine the effects of simulated acid rain (control, normal rain, and treatments with rain at pH of 4.5, 3.5 and 2.5) on the fluxes of CO₂, CH₄ and N₂O and on rice productivity in subtropical China. Total CO₂ fluxes at pHs of 4.5, 3.5 and 2.5 were 10.3, 9.7 and 3.2% lower in the early paddy and 28.3, 14.8 and 6.8% lower in the late paddy, respectively, than the control. These differences from the control were significant for pH 3.5 and 4.5. Total CH₄ fluxes at pHs of 4.5, 3.5 and 2.5 were 50.4, 32.9 and 25.2% lower in the early paddy, respectively, than the control. pH had no significant effect on CH₄ flux in the late paddy or for total (early + late) emissions. N₂O flux was significantly higher at pH 2.5 than 3.5 and 4.5 but did not differ significantly from the flux in the control. Global-warming potentials (GWPs) were lower than the control at pH 3.5 and 4.5 but not 2.5, whereas rice yield was not appreciably affected by pH. Acid rain (between 3.5 and 4.5) may thus significantly affect greenhouse gases emissions by altering soil properties such as pH and nutrient pools, whereas highly acidic rain (pH 2.5) could increase GWPs (but not significantly), probably partially due to an increase in the production of plant litter.

Effect of exogenous abscisic acid on morphology, growth and nutrient uptake of rice (Oryza sativa) roots under simulated acid rain stress

Application of proper ABA can improve acid tolerance of rice roots by balancing endogenous hormones and promoting nutrient uptake. Abscisic acid (ABA) has an important signaling role in enhancing plant tolerance to environmental stress. To alleviate the inhibition on plant growth and productivity caused by acid rain, it is crucial to clarify the regulating mechanism of ABA on adaptation of plants to acid rain. Here, we studied the effects of exogenously applied ABA on nutrients uptake of rice roots under simulated acid rain (SAR) stress from physiological, biochemical and molecular aspects. Compared to the single SAR treatment (pH 4.5 or 3.5), exogenous 10 μM ABA alleviated the SAR-induced inhibition of root growth by balancing endogenous hormones (abscisic acid, indole-3-acetic acid, gibberellic acid and zeatin), promoting nutrient uptake (nitrate, P, K and Mg) in rice roots, and increasing the activity of the plasma membrane H⁺-ATPase by up-regulating expression levels of genes (OSA2, OSA4, OSA9 and OSA10). However, exogenous 100 μM ABA exacerbated the SAR-caused inhibition of root growth by disrupting the balance of endogenous hormones, and inhibiting nutrient uptake (nitrate, P, K, Ca and Mg) through decreasing the activity of the plasma membrane H⁺-ATPase. These results indicate that proper concentration of exogenous ABA could enhance tolerance of rice roots to SAR stress by promoting nutrients uptake and balancing endogenous hormones.

Combined acid rain and lanthanum pollution and its potential ecological risk for nitrogen assimilation in soybean seedling roots

Rare earth elements (REEs) are used in various fields, resulting in their accumulation in the environment. This accumulation has affected the survival and distribution of crops in various ways. Acid rain is a serious global environmental problem. The combined effects on crops from these two types of pollution have been reported, but the effects on crop root nitrogen assimilation are rarely known. To explore the impact of combined contamination from these two pollutants on crop nitrogen assimilation, the soybean seedlings were treated with simulated environmental pollution from acid rain and a representative rare earth ion, lanthanum ion (La3+), then the indexes related to plant nitrogen assimilation process in roots were determined. The results showed that combined treatment with pH 4.5 acid rain and 0.08 mM La3+ promoted nitrogen assimilation synergistically, while the other combined treatments all showed inhibitory effects. Moreover, acid rain aggravated the inhibitory effect of 1.20 or 0.40 mM La3+ on nitrogen assimilation in soybean seedling roots. Thus, the effects of acid rain and La3+ on crops depended on the combination levels of acid rain intensity and La3+ concentration. Acid rain increases the bioavailability of La3+, and the combined effects of these two pollutants were more serious than that of either pollutant alone. These results provide new evidence in favor of limiting overuse of REEs in agriculture. This work also provides a new framework for ecological risk assessment of combined acid rain and REEs pollution on soybean crops.

Silicon alleviates simulated acid rain stress of Oryza sativa L. seedlings by adjusting physiology activity and mineral nutrients

Silicon (Si) has been a modulator in plants under abiotic stresses, such as acid rain. To understand how silicon made an effect on rice (Oryza sativa L.) exposed to simulated acid rain (SAR) stress, the growth, physiologic activity, and mineral nutrient content in leaves of rice were investigated. The results showed that combined treatments with Si (1.0, 2.0, or 4.0 mM) and SAR (pH 4.0, 3.0, or 2.0) obviously improved the rice growth compared with the single treatment with SAR. Incorporation of Si into SAR treatment decreased malondialdehyde (MDA) content; increased soluble protein and proline contents; promoted CAT, POD, SOD, and APX activity; and maintained the K, Ca, Mg, Fe, Zn, Cu content balance in leaves of rice seedlings under SAR stress. The moderate concentration of Si (2.0 mM) was better than the low and high concentration of Si (1.0 and 4.0 mM). Therefore, application of Si could be a better strategy for maintaining the crop productivity in acid rain regions.

Analysis of the combined effects of lanthanum and acid rain, and their mechanisms, on nitrate reductase transcription in plants

Rare earth element (REE) pollution and acid rain are major global environmental concerns, and their spatial distributions overlap. Thus, both forms of pollution combine to act on plants. Nitrogen is important for plant growth, and nitrate reductase (NR) is a key plant enzyme that catalyzes nitrogen assimilation. Studying the combined effects of REEs and acid rain on plant nitrogen-based nutrients has important environmental significance. Here, soybean (Glycine max) plants, commonly used for toxicological studies, were exposed to lanthanum (La), a REE, and acid rain to study the NR activities and NR transcriptional levels in the roots. To explain how the pollution affected the NR transcriptional level, we simultaneously observed the contents of intracellular La and nutrient elements, protoplast morphology, membrane lipid peroxidation and intracellular pH. A combined treatment of 0.08mmol/L La and pH 4.5 acid rain increased the NR activity, decreased the NR transcriptional level, increased the intracellular nutrient elements' contents and caused deformations in membrane structures. Other combined treatments significantly decreased the aforementioned parameters and caused serious damage to the membrane structures. The variation in the amplitudes of combined treatments was greater than those of individual treatments. Compared with the control and individual treatments, combined treatments increased membrane permeability, the malondialdehyde content, and intracellular H+ and La contents, and with an increasing La concentration or acid strength, the change in amplitude increased. Thus, the combined effects on NR gene transcription in soybean seedling roots were related to the intracellular nutrient elements' contents, protoplast morphology, membranous lipid peroxidation, intracellular pH and La content.

Effects and mechanism of acid rain on plant chloroplast ATP synthase

Acid rain can directly or indirectly affect plant physiological functions, especially photosynthesis. The enzyme ATP synthase is the key in photosynthetic energy conversion, and thus, it affects plant photosynthesis. To clarify the mechanism by which acid rain affects photosynthesis, we studied the effects of acid rain on plant growth, photosynthesis, chloroplast ATP synthase activity and gene expression, chloroplast ultrastructure, intracellular H(+) level, and water content of rice seedlings. Acid rain at pH 4.5 remained the chloroplast structure unchanged but increased the expression of six chloroplast ATP synthase subunits, promoted chloroplast ATP synthase activity, and increased photosynthesis and plant growth. Acid rain at pH 4.0 or less decreased leaf water content, destroyed chloroplast structure, inhibited the expression of six chloroplast ATP synthase subunits, decreased chloroplast ATP synthase activity, and reduced photosynthesis and plant growth. In conclusion, acid rain affected the chloroplast ultrastructure, chloroplast ATPase transcription and activity, and P n by changing the acidity in the cells, and thus influencing the plant growth and development. Finally, the effects of simulated acid rain on the test indices were found to be dose-dependent.

Spinach 14-3-3 protein interacts with the plasma membrane H(+)-ATPase and nitrate reductase in response to excess nitrate stress

To investigate the function of 14-3-3 protein in response to excess nitrate stress, a 14-3-3 protein, designated as So14-3-3, was isolated from spinach. Phylogenetic analysis demonstrated that So14-3-3 belongs to non-ε group of 14-3-3 superfamily. Real time-quantitative RT-PCR and western blot analysis showed that So14-3-3 was induced by excess nitrate stress in spinach roots and leaves. After nitrate treatment, the phosphorylated H(+)-ATPase and nitrate reductase (NR) increased and decreased respectively. Co-Immunoprecipitation (Co-IP) suggested that the interaction of So14-3-3 with the phosphorylated H(+)-ATPase enhanced, but reduced with phosphorylated NR in spinach roots after nitrate treatment. Besides, 5 proteins interacted with So14-3-3 were found by Co-IP and LC-MS/MS analysis. So14-3-3 overexpressing transgenic tobacco plants showed enhanced tolerance to nitrate treatment at the germination and young seedlings stage. The transgenic plants showed longer root length, lower malondialdehyde (MDA), H2O2, protein carbonyl contents, relatively higher soluble sugar and protein contents, than the WT plants after nitrate treatment. The phosphorylation levels of H(+)-ATPase in transgenic plants were higher than the WT plants after nitrate treatment, whereas NR were lower. Additionally, in transgenic plants, the interaction of So14-3-3 with phosphorylated H(+)-ATPase and NR increased and decreased more than the WT plants under nitrate stress, leading to higher H(+)-ATPase and NR activities in transgenic plants. These data suggested that So14-3-3 might be involved in nitrate stress response by interacting with H(+)-ATPase and NR.

Oryza sativa H+-ATPase (OSA) is Involved in the Regulation of Dumbbell-Shaped Guard Cells of Rice

The stomatal apparatus consists of a pair of guard cells and regulates gas exchange between the leaf and atmosphere. In guard cells, blue light (BL) activates H(+)-ATPase in the plasma membrane through the phosphorylation of its penultimate threonine, mediating stomatal opening. Although this regulation is thought to be widely adopted among kidney-shaped guard cells in dicots, the molecular basis underlying that of dumbbell-shaped guard cells in monocots remains unclear. Here, we show that H(+)-ATPases are involved in the regulation of dumbbell-shaped guard cells. Stomatal opening of rice was promoted by the H(+)-ATPase activator fusicoccin and by BL, and the latter was suppressed by the H(+)-ATPase inhibitor vanadate. Using H(+)-ATPase antibodies, we showed the presence of phosphoregulation of the penultimate threonine in Oryza sativa H(+)-ATPases (OSAs) and localization of OSAs in the plasma membrane of guard cells. Interestingly, we identified one H(+)-ATPase isoform, OSA7, that is preferentially expressed among the OSA genes in guard cells, and found that loss of function of OSA7 resulted in partial insensitivity to BL. We conclude that H(+)-ATPase is involved in BL-induced stomatal opening of dumbbell-shaped guard cells in monocotyledon species.

Photosynthetic and growth responses of Schima superba seedlings to sulfuric and nitric acid depositions

A continuing rise in acid deposition can cause forest degradation. In China, acid deposition has converted gradually from sulfuric acid deposition (SAD) to nitric acid deposition (NAD). However, the differing responses of photosynthesis and growth to depositions of sulfuric vs. nitric acid have not been well studied. In this study, 1-year-old seedlings of Schima superba, a dominant species in subtropical forests, were treated with two types of acid deposition SO4 (2-)/NO3 (-) ratios (8:1 and 0.7:1) with two applications (foliar spraying and soil drenching) at two pH levels (pH 3.5 and pH 2.5) over a period of 18 months. The results showed that the intensity, acid deposition type, and spraying method had significant effects on the physiological characteristics and growth performance of seedlings. Acid deposition at pH 2.5 via foliar application reduced photosynthesis and growth of S. superba, especially in the first year. Unlike SAD, NAD with high acidity potentially alleviated the negative effects of acidity on physiological properties and growth, probably due to a fertilization effect that improved foliar nitrogen and chlorophyll contents. Our results suggest that trees were damaged mainly by direct acid stress in the short term, whereas in the long term, soil acidification was also likely to be a major risk to forest ecosystems. Our data suggest that the shift in acid deposition type may complicate the ongoing challenge of anthropogenic acid deposition to ecosystem stability.