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Xu C, Zhang Y, Ren M, Liu K, Wu Q, Zhang C, Wang S, Kong F. A fluorescent probe for detecting H 2O 2 and delivering H 2S in lysosomes and its application in maintaining the redox environments. Talanta 2024; 273:125894. [PMID: 38461644 DOI: 10.1016/j.talanta.2024.125894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 02/29/2024] [Accepted: 03/07/2024] [Indexed: 03/12/2024]
Abstract
Hydrogen peroxide (H2O2) is a reactive oxygen species (ROS) that can be used as a marker for the occurrence of oxidative stress in the organism. Lysosomes serve as intracellular digestive sites, and when the concentration of H2O2 in them is abnormal, lysosomal function is often impaired, leading to the development of diseases. Hydrogen sulfide (H2S) acts as a gaseous signaling molecule that scavenges H2O2 from cells and tissues, thereby maintaining the redox environment of the body. However, most of the reported hydrogen peroxide fluorescent probes so far can only detect H2O2, but cannot maintain the intracellular redox environment. In this paper, an H2O2 fluorescent probe LN-HOD with lysosomal targeting properties was designed and synthesized by combining the H2O2 recognition site with a naphthylamine fluorophore via a thiocarbamate moiety. The probe has the advantages of large Stokes shift (110 nm), high sensitivity and good H2S release capability. The probe LN-HOD can be used to detect H2O2 in cells, zebrafish and plant roots. In addition, LN-HOD detects changes in the concentration of H2O2 in plant roots when Arabidopsis is stressed by cadmium ion (Cd2+). And through its ability to release H2S, it can help to remove excess H2O2 and maintain the redox environment in cells, zebrafish and plant roots. The present work provides new ideas for the detection and assisted removal of H2O2, which contributes to the in-depth study of the cellular microenvironment in organisms.
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Affiliation(s)
- Chen Xu
- State Key Laboratory of Biobased Material and Green Papermaking, Key Laboratory of Pulp & Paper Science and Technology of Shandong Province, Ministry of Education, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, PR China
| | - Yukun Zhang
- State Key Laboratory of Biobased Material and Green Papermaking, Key Laboratory of Pulp & Paper Science and Technology of Shandong Province, Ministry of Education, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, PR China
| | - Mingguang Ren
- State Key Laboratory of Biobased Material and Green Papermaking, Key Laboratory of Pulp & Paper Science and Technology of Shandong Province, Ministry of Education, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, PR China.
| | - Keyin Liu
- State Key Laboratory of Biobased Material and Green Papermaking, Key Laboratory of Pulp & Paper Science and Technology of Shandong Province, Ministry of Education, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, PR China
| | - Qin Wu
- State Key Laboratory of Biobased Material and Green Papermaking, Key Laboratory of Pulp & Paper Science and Technology of Shandong Province, Ministry of Education, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, PR China
| | - Chunling Zhang
- Department of Rheumatology, Central Hospital Affiliated to Shandong First Medical University, Jinan City, Shandong Province, Jinan, 250013, PR China.
| | - Shoujuan Wang
- State Key Laboratory of Biobased Material and Green Papermaking, Key Laboratory of Pulp & Paper Science and Technology of Shandong Province, Ministry of Education, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, PR China
| | - Fangong Kong
- State Key Laboratory of Biobased Material and Green Papermaking, Key Laboratory of Pulp & Paper Science and Technology of Shandong Province, Ministry of Education, Qilu University of Technology (Shandong Academy of Sciences), Jinan, 250353, PR China.
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Rath M, Dümmer M, Hauslage J, Liemersdorf C, Forreiter C. Hardware Development for Plant Cultivation Allowing In Situ Fluorescence Analysis of Calcium Fluxes in Plant Roots Under Microgravity and Ground-Control Conditions. Astrobiology 2024; 24:275-282. [PMID: 38507696 DOI: 10.1089/ast.2023.0038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/22/2024]
Abstract
Maintaining an optimal leaf and stem orientation to yield a maximum photosynthetic output is accomplished by terrestrial plants using sophisticated mechanisms to balance their orientation relative to the Earth's gravity vector and the direction of sunlight. Knowledge of the signal transduction chains of both gravity and light perception and how they influence each other is essential for understanding plant development on Earth and plant cultivation in space environments. However, in situ analyses of cellular signal transduction processes in weightlessness, such as live cell imaging of signaling molecules using confocal fluorescence microscopy, require an adapted experimental setup that meets the special requirements of a microgravity environment. In addition, investigations under prolonged microgravity conditions require extensive resources, are rarely accessible, and do not allow for immediate sample preparation for the actual microscopic analysis. Therefore, supply concepts are needed that ensure both the viability of the contained plants over a longer period of time and an unhindered microscopic analysis in microgravity. Here, we present a customized supply unit specifically designed to study gravity-induced Ca2+ mobilization in roots of Arabidopsis thaliana. The unit can be employed for ground-based experiments, in parabolic flights, on sounding rockets, and probably also aboard the International Space Station.
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Affiliation(s)
- Magnus Rath
- Department of Plant Physiology, Philipps-Universität Marburg, Marburg, Germany
| | - Michaela Dümmer
- Department of Plant Physiology, Philipps-Universität Marburg, Marburg, Germany
| | - Jens Hauslage
- Gravitational Biology, German Aerospace Center, Department of Aerospace Medicine, Cologne, Germany
| | - Christian Liemersdorf
- Gravitational Biology, German Aerospace Center, Department of Aerospace Medicine, Cologne, Germany
| | - Christoph Forreiter
- Department of Plant Physiology, Philipps-Universität Marburg, Marburg, Germany
- Department of Biology, University Siegen, Siegen, Germany
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3
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Xiao D, He X, Zhang W, Chen M, Hu P, Wu H, Liao X, Wang K. Strengthen interactions among fungal and protistan taxa by increasing root biomass and soil nutrient in the topsoil than in the soil-rock mixing layer. J Environ Manage 2024; 355:120468. [PMID: 38430883 DOI: 10.1016/j.jenvman.2024.120468] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Revised: 01/03/2024] [Accepted: 02/20/2024] [Indexed: 03/05/2024]
Abstract
Soil depth plays a crucial role in shaping the interactions between soil microbes and nutrient availability. However, there is limited understanding of how bacterial, fungal, and protistan communities respond to different soil depths, particularly in the unique geological context and soil properties of karst regions. Organic matter, total nitrogen, and phosphorus, ammonium, nitrate, and plant root biomass, as well as bacterial and fungal abundances, bacterial and protistan diversity were higher in the 0-20 cm soil layer than those in the 20-40 cm and soil-rock mixing layers. In contrast, soil pH was higher in the 20-40 cm and soil-rock mixing layers than that in the 0-20 cm soil layer. The soil exchange of calcium, nitrate, and root biomass were identified as the primary factors regulating microbial assemblages across the depth transect. Moreover, co-occurrence network analysis revealed a greater degree of connectivity between protistan taxa and fungal taxa in the 0-20 cm soil layer than those in the 20-40 cm and soil-rock mixing layers. In contrast, the number of association links between protist-bacteria and bacteria-bacteria was higher in the soil-rock mixing layers compared to the 0-20 cm soil layer. Actinobacteria, Ascomycota, and unclassified protistan taxa were identified as keystones, displaying the highest number of connections with other microbial taxa. Collectively, these results suggested that the increased plant root biomass, coupled with sufficient available nutrient inputs in the upper 0-20 cm soil layer, facilitates strong interactions among fungal and protistan taxa, which play crucial roles in the topsoil. However, as nutrients become less available with increasing depth, competition among bacterial taxa and the predation between bacterial and protistan taxa intensify. Therefore, these findings indicate the interactions among keystone taxa at different soil depths has the potential to generate ecological implications during vegetation restoration in fragile ecosystems.
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Affiliation(s)
- Dan Xiao
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Huanjiang Observation and Research Station for Karst Ecosystems, Chinese Academy of Sciences, Huanjiang 547100, China; Guangxi Industrial Technology Research Institute for Karst Rocky Desertification Control, Nanning 530001, China; Guangxi Key Laboratory of Karst Ecological Processes and Services, Huanjiang 547100, China
| | - Xunyang He
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Huanjiang Observation and Research Station for Karst Ecosystems, Chinese Academy of Sciences, Huanjiang 547100, China; Guangxi Industrial Technology Research Institute for Karst Rocky Desertification Control, Nanning 530001, China; Guangxi Key Laboratory of Karst Ecological Processes and Services, Huanjiang 547100, China.
| | - Wei Zhang
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Huanjiang Observation and Research Station for Karst Ecosystems, Chinese Academy of Sciences, Huanjiang 547100, China; Guangxi Industrial Technology Research Institute for Karst Rocky Desertification Control, Nanning 530001, China; Guangxi Key Laboratory of Karst Ecological Processes and Services, Huanjiang 547100, China
| | - Meifeng Chen
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Huanjiang Observation and Research Station for Karst Ecosystems, Chinese Academy of Sciences, Huanjiang 547100, China
| | - Peilei Hu
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Huanjiang Observation and Research Station for Karst Ecosystems, Chinese Academy of Sciences, Huanjiang 547100, China; Guangxi Industrial Technology Research Institute for Karst Rocky Desertification Control, Nanning 530001, China; Guangxi Key Laboratory of Karst Ecological Processes and Services, Huanjiang 547100, China
| | - Hanqing Wu
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Huanjiang Observation and Research Station for Karst Ecosystems, Chinese Academy of Sciences, Huanjiang 547100, China; Guangxi Industrial Technology Research Institute for Karst Rocky Desertification Control, Nanning 530001, China; Guangxi Key Laboratory of Karst Ecological Processes and Services, Huanjiang 547100, China
| | - Xionghui Liao
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Huanjiang Observation and Research Station for Karst Ecosystems, Chinese Academy of Sciences, Huanjiang 547100, China; Guangxi Industrial Technology Research Institute for Karst Rocky Desertification Control, Nanning 530001, China; Guangxi Key Laboratory of Karst Ecological Processes and Services, Huanjiang 547100, China
| | - Kelin Wang
- Key Laboratory of Agro-ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Huanjiang Observation and Research Station for Karst Ecosystems, Chinese Academy of Sciences, Huanjiang 547100, China; Guangxi Industrial Technology Research Institute for Karst Rocky Desertification Control, Nanning 530001, China; Guangxi Key Laboratory of Karst Ecological Processes and Services, Huanjiang 547100, China.
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4
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Li N, Wang Y, Zhou L, Fu D, Chen T, Chen X, Wang Q, Zhu W. The joint action of biochar and plant roots on U-stressed soil remediation: Insights from bacteriomics and metabolomics. J Hazard Mater 2024; 461:132635. [PMID: 37793252 DOI: 10.1016/j.jhazmat.2023.132635] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Revised: 09/18/2023] [Accepted: 09/24/2023] [Indexed: 10/06/2023]
Abstract
Although biological remediation of U-stressed soil has been studied for a long time, the combined effects of biochar and plant roots are rarely discussed and its influence on rhizosphere microecology are still unknown. Based on pot experiments, we explored the combined efforts of biochar addition and plant roots on U-stressed rhizosphere soil in several ways, including soil physicochemical properties, soil enzyme activities, uranium chemical speciation, bacterial community structure and metabolic pathways. Our results indicates that the content of DTPA-extractable U decreased by 49.31% after biochar and plant roots application, whereas plant roots only treatment just decreased by 25.46%. Further research has found that the pH, CEC, enzyme activities and nutritional level of rhizosphere soil were more significantly improved after biochar and plant roots application. Meanwhile, the abundance and diversity of bacterial community was also upregulated, which was also suggested by the stronger metabolisms of lipids, carbohydrate, nucleotides as well as amino acids. Correlation analyses also certified the positive associations between soil properties, bacterial communities and metabolism. We speculated that the uranium immobilization was mainly attributed to the direct fixation of biochar for its alkalinity, CEC, DOC, etc. and the joint action of biochar and plant roots for their stimulating effects on bacteria. Our findings suggested that combination of biochar and plant roots could limit bioaccessibility of U in a larger extend than plant roots only, which may be a better strategy for rapid remediation of U-streesed soil.
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Affiliation(s)
- Nan Li
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, Sichuan 621010, China
| | - Yilin Wang
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, Sichuan 621010, China
| | - Li Zhou
- School of Environment and Resource, Southwest University of Science and Technology, Mianyang, Sichuan 621010, China
| | - Dengjiang Fu
- School of National Defense & Nuclear Science and Technology, Southwest University of Science and Technology, Mianyang, Sichuan 621010, China
| | - Tao Chen
- School of National Defense & Nuclear Science and Technology, Southwest University of Science and Technology, Mianyang, Sichuan 621010, China
| | - Xiaoming Chen
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, Sichuan 621010, China
| | - Qing Wang
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, Sichuan 621010, China.
| | - Wenkun Zhu
- School of Life Science and Engineering, Southwest University of Science and Technology, Mianyang, Sichuan 621010, China.
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5
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Acharya A, Pesacreta TC. P-ring: The conserved nature of phosphorus enriched cells in seedling roots of distantly related species. Plant Signal Behav 2023; 18:2217389. [PMID: 37332191 DOI: 10.1080/15592324.2023.2217389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 06/20/2023]
Abstract
Plants require sunlight, carbon dioxide, water and mineral ions for their growth and development. Roots in vascular plants sequester water and ions from soil and transport them to the aboveground parts of the plant. Due to heterogeneous nature of soil, roots have evolved several regulatory barriers from molecular to organismic level that selectively allows certain ions to enter the vascular tissues for transport according to the physiological and metabolic demands of plant cell. Current literature profusely elaborates about apoplastic barriers, but the possibility of the existence of a symplastic regulation through phosphorous-enriched cells has not been mentioned. Recent investigations on native ion distribution in seedling roots of several species (Pinus pinea, Zea mays and Arachis hypogaea) identified an ionomic structure termed as "P-ring". The P-ring is composed of a group of phosphorous-rich cells arranged in radial symmetry encircling the vascular tissues. Physiological investigations indicate that the structure is relatively inert to external temperature and ion fluctuations while anatomical studies indicates that they are less likely to be apoplastic in nature. Furthermore, their localization surrounding vascular tissues and in evolutionarily distinct plant lineages might indicate their conserved nature and involvement in ion regulation. Undoubtedly, this is an interesting and important observation that has significant merit for further investigations by the plant science community.
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Affiliation(s)
- Aniruddha Acharya
- Department of Biology & Chemistry, Texas A&M International University, Laredo, TX, USA
| | - Thomas C Pesacreta
- Department of Biology, University of Louisiana at Lafayette, Lafayette, LA, USA
- Microscopy Center, University of Louisiana, Lafayette, LA, USA
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6
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Smith DJ, Wynn-Thompson TM, Stremler MA, Williams MA, Seiler JR, Hession WC. Root reinforcement and extracellular products reduce streambank fluvial erosion. Sci Total Environ 2023; 896:165125. [PMID: 37392881 DOI: 10.1016/j.scitotenv.2023.165125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Revised: 06/22/2023] [Accepted: 06/23/2023] [Indexed: 07/03/2023]
Abstract
A detailed understanding of the factors that impact bank erodibility is necessary to effectively model changes in channel form. This study evaluated the combined contributions of roots and soil microorganisms to soil resistance against fluvial erosion. To do this, three flume walls were constructed to simulate unvegetated and rooted streambanks. Unamended and organic material (OM) amended soil treatments with either no-roots (bare soil), synthetic (inert) roots, or living roots (Panicum virgatum) were created and tested with the corresponding flume wall treatment. OM stimulated the production of extracellular polymeric substances (EPS) and appeared to increase the applied stress required to initiate soil erosion. Synthetic fibers alone provided a base reduction in soil erosion, regardless of the flow rate used. When used in combination, synthetic roots and OM-amendments reduced erosion rates by 86 % or more compared to bare soil; this reduction was identical to the live rooted treatments (95 % to 100 %). In summary, a synergistic relationship between roots and organic carbon inputs can significantly reduce soil erosion rates due to fiber reinforcement and EPS production. These results indicate that root-biochemical interactions, like root physical mechanisms, play an important role in influencing channel migration rates due to reductions in streambank erodibility.
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Affiliation(s)
- D J Smith
- School of Plant and Environmental Sciences, Virginia Tech, 220 Ag Quad Lane, Latham Hall Rm 512, Blacksburg, VA, 24061, USA.
| | | | - M A Stremler
- Department of Biomedical Engineering and Mechanics, Virginia Tech, USA
| | - M A Williams
- School of Plant and Environmental Sciences, Virginia Tech, 220 Ag Quad Lane, Latham Hall Rm 512, Blacksburg, VA, 24061, USA
| | - J R Seiler
- Department of Forest Resources and Environmental Conservation, Virginia Tech, USA
| | - W C Hession
- Department of Biological Systems Engineering, Virginia Tech, USA
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Ji B, Zhao Y, Li Q, Yang Y, Wei T, Tang C, Zhang J, Ruan W, Tai Y. Interrelation between macrophytes roots and cathode in constructed wetland-microbial fuel cells: Further evidence. Sci Total Environ 2022; 838:156071. [PMID: 35597339 DOI: 10.1016/j.scitotenv.2022.156071] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2022] [Revised: 04/28/2022] [Accepted: 05/16/2022] [Indexed: 06/15/2023]
Abstract
As an essential component in constructed wetland-microbial fuel cells (CW-MFC) system, the macrophytes play multiple roles in bioelectricity generation and decontaminants performance. However, the interrelation between macrophytes roots and cathode has not been fully investigated despite the fact that plant cultivation strategy is a critical issue in practice. For the first time, this study was designed to explore the interaction between macrophytes and cathode in CW-MFC by planting Cyperus altrnlifolius at relatively different positions from the cathode. The results showed that plants exhibited higher bioelectricity generation and dramatically improved pollution removal, as well as the improved richness and diversity of cathode microbes. More significantly, the relative locations between the plant roots and the cathode could lead to different cathode working patterns, while the optimal cathode pattern "plant root-assisted bio- & air-cathode" was formed when the plant roots are directly placed on the air-cathode layer in CW-MFC. The insight into the plant root and cathode relationship lies in whether the "multi-function cathode" can be established. This study contributes to increase the knowledge regarding the presence and behavior of plant roots and cathode throughout a CW-MFC system.
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Affiliation(s)
- Bin Ji
- Department of Ecology, Institute of Hydrobiology, Jinan University, Guangzhou 510632, PR China; State Key Laboratory of Eco-Hydraulics in Northwest Arid Region, Xi'an University of Technology, Xi'an 710048, PR China
| | - Yaqian Zhao
- State Key Laboratory of Eco-Hydraulics in Northwest Arid Region, Xi'an University of Technology, Xi'an 710048, PR China.
| | - Qiwen Li
- Department of Ecology, Institute of Hydrobiology, Jinan University, Guangzhou 510632, PR China; Engineering Research Center of Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Guangzhou, PR China
| | - Yang Yang
- Department of Ecology, Institute of Hydrobiology, Jinan University, Guangzhou 510632, PR China; Engineering Research Center of Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Guangzhou, PR China
| | - Ting Wei
- State Key Laboratory of Eco-Hydraulics in Northwest Arid Region, Xi'an University of Technology, Xi'an 710048, PR China; Chemical Engineering Department, University of Alcalá, Madrid, Spain
| | - Cheng Tang
- State Key Laboratory of Eco-Hydraulics in Northwest Arid Region, Xi'an University of Technology, Xi'an 710048, PR China
| | - Jinhua Zhang
- Department of Ecology, Institute of Hydrobiology, Jinan University, Guangzhou 510632, PR China; Engineering Research Center of Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Guangzhou, PR China
| | - Weifeng Ruan
- Department of Ecology, Institute of Hydrobiology, Jinan University, Guangzhou 510632, PR China; Engineering Research Center of Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Guangzhou, PR China
| | - Yiping Tai
- Department of Ecology, Institute of Hydrobiology, Jinan University, Guangzhou 510632, PR China; Engineering Research Center of Tropical and Subtropical Aquatic Ecological Engineering, Ministry of Education, Guangzhou, PR China.
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Urfan M, Sharma S, Hakla HR, Rajput P, Andotra S, Lehana PK, Bhardwaj R, Khan MS, Das R, Kumar S, Pal S. Recent trends in root phenomics of plant systems with available methods- discrepancies and consonances. Physiol Mol Biol Plants 2022; 28:1311-1321. [PMID: 35910442 PMCID: PMC9334470 DOI: 10.1007/s12298-022-01209-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2021] [Revised: 07/02/2022] [Accepted: 07/12/2022] [Indexed: 06/03/2023]
Abstract
The phenotyping of plant roots is a challenging task and poses a major lacuna in plant root research. Roots rhizospheric zone is affected by several environmental cues among which salinity, drought, heavy metal and soil pH are key players. Among biological factors, fungal, nematode and bacterial interactions with roots are vital for improving nutrient uptake efficiency in plants. The subterranean nature of a plant root and the limited number of approaches for root phenotyping offers a great challenge to the plant breeders to select a desirable root trait under different stress conditions. Identification of key root traits can provide a basic understanding for generating crop plants with enhanced ability to withstand various biotic or abiotic stresses. For instance, crops with improved soil exploration potential, phosphate uptake efficiency, water use efficiency and others. Laboratory methods such as hydroponics, rhizotron, rhizoslide and luminescence observatory for roots do not provide precise and desired root quantification attributes. Though 3D imaging by X-ray computed tomography (X-ray-CT) and magnetic resonance imaging techniques are complex, however, it provides the most applicable and practically relevant data for quantifying root system architecture traits. This review outlines the current developments in root studies including recent approaches viz. X-ray-CT, MRI, thermal infrared imaging and minirhizotron. Although root phenotyping is a laborious procedure, it offers multiple advantages by removing discrepancies and providing the actual practical significance of plant roots for breeding programs.
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Affiliation(s)
- Mohammad Urfan
- Plant Physiology Laboratory, Department of Botany, University of Jammu, Jammu, 180006 India
| | - Shubham Sharma
- Plant Physiology Laboratory, Department of Botany, University of Jammu, Jammu, 180006 India
| | - Haroon Rashid Hakla
- Plant Physiology Laboratory, Department of Botany, University of Jammu, Jammu, 180006 India
| | - Prakriti Rajput
- Plant Physiology Laboratory, Department of Botany, University of Jammu, Jammu, 180006 India
| | - Sonali Andotra
- Plant Physiology Laboratory, Department of Botany, University of Jammu, Jammu, 180006 India
| | | | - Renu Bhardwaj
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar, 143001 India
| | - M Suhail Khan
- USBT, Guru Gobind Singh Indraprastha University, Dwarka, 110 078 New Delhi India
| | - Ranjan Das
- Department of Crop Physiology, Assam Agricultural University, Jorhat, 785013 India
| | - Sunil Kumar
- Department of Statistics, University of Jammu, Jammu, 180006 India
| | - Sikander Pal
- Plant Physiology Laboratory, Department of Botany, University of Jammu, Jammu, 180006 India
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Yin J, Zhao L, Xu X, Li D, Qiu H, Cao X. Evaluation of long-term carbon sequestration of biochar in soil with biogeochemical field model. Sci Total Environ 2022; 822:153576. [PMID: 35104525 DOI: 10.1016/j.scitotenv.2022.153576] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 01/15/2022] [Accepted: 01/27/2022] [Indexed: 06/14/2023]
Abstract
Return of biomass-derived biochar (BC) into soil has been considered as one of the carbon sequestration (CS) methods. It is important to evaluate the long-term biochar CS potential by integrating the complex physical interferences and biochemical reactions in real soil. This study incorporated biochar into a biogeochemical field model and established a daily-resolution simulator to assess 5-, 50-, 500-year CS potential upon Soil-Biochar-Plant interaction. Through the scenario simulation of burying 7.5-75 t/ha BC-C in a 50 cm-depth rainfed cropland soil with corn planted, we found biochar could retain 483-557 kg C/t BC-C after 500 years' natural decomposition, although soil pedoturbation and plant erosion accelerated its mineralization. Moreover, biochar provided labile-C to compensate microbial decomposition and modified long-term soil climate, resulting in a decrease in soil organic carbon degradation of 44-265 kg C/t BC-C. Furthermore, biochar promoted plant photosynthetic performance by offering exogenous nutrients, equivalent to capturing 66-1039 kg C/t BC-C over 50 years. But biochar limited endogenous nutrient release and inhibited plant growth after exogenous nutrients exhausted, so total CS decreases yearly after reaching an upper limit (1030-1722 kg C/t BC-C). A total of 651-725 kg C/t BC-C could be sequestered after 500 years. And biochar is more potential in infertile and arid soils. Overall, this study indicates the necessity of taking the biogeochemical reactions into consideration to assess biochar long-term CS, and it further demonstrates biochar soil implementation is a prospective carbon-negative strategy.
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Affiliation(s)
- Jianxiang Yin
- China-UK Low Carbon College, Shanghai Jiao Tong University, Shanghai 201306, China
| | - Ling Zhao
- China-UK Low Carbon College, Shanghai Jiao Tong University, Shanghai 201306, China; School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China.
| | - Xiaoyun Xu
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Deping Li
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Hao Qiu
- School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Xinde Cao
- China-UK Low Carbon College, Shanghai Jiao Tong University, Shanghai 201306, China; School of Environmental Science and Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
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10
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Yang L, Huang S, Liu Y, Zheng S, Liu H, Rensing C, Fan Z, Feng R. Selenate regulates the activity of cell wall enzymes to influence cell wall component concentration and thereby affects the uptake and translocation of Cd in the roots of Brassica rapa L. Sci Total Environ 2022; 821:153156. [PMID: 35041952 DOI: 10.1016/j.scitotenv.2022.153156] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2021] [Revised: 12/22/2021] [Accepted: 01/11/2022] [Indexed: 06/14/2023]
Abstract
Selenium (Se) can be used to counteract cadmium (Cd) toxicity in plants. However, mechanisms underlying the alleviation of Cd toxicity by Se have not been completely elucidated, especially those by which Se reduces Cd translocation. A hydroponic experiment was performed to illustrate the regulatory mechanisms of Cd transport by selenate (Se (VI)) in pakchoi (Brassica rapa L., LvYou 102). The results showed that this plant had a high accumulation capacity for Cd, and Se(VI) addition restricted Cd translocation from roots to shoots. Se(VI) exposure stimulated the concentrations of pectins and hemicellulose II but reduced the concentration of hemicellulose I in the roots. In many cases, the enzymes pectin methylesterase, polygalacturonase, and β-galactosidase were dose-dependently triggered by Se(VI) under Cd exposure, but root calcium concentration was significantly lowered (p < 0.05). Xyloglucan endoglycosidase (hydrolase) was triggered by Se(VI) under 2 mg L-1 Cd exposure and cellulase was generally activated by Se(VI) under Cd stress. The above results suggest that Se(VI) up-regulates pectin methylesterase activity, stimulates synthesis of pectins, and down-regulates root Ca concentration to release free carboxyl groups to combine Cd. In this study, the relationships between enzyme activity (e.g., peroxidase, superoxidase and β-galactosidase), hydrogen peroxide, cell wall structure strengthening/loosening, and Cd toxicity affected by Se(VI) were also discussed.
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Affiliation(s)
- Li Yang
- Institute of Environmental Microbiology, College of Resources and Environment, Fujian Agriculture & Forestry University, Fuzhou 350002, China
| | - ShuangQin Huang
- Institute of Environmental Microbiology, College of Resources and Environment, Fujian Agriculture & Forestry University, Fuzhou 350002, China
| | - Yang Liu
- Agricultural College, Guangxi University, Nanning, China
| | - ShunAn Zheng
- Rural Energy and Environment Agency, Ministry of Agriculture and Rural Affairs, Beijing 100125, China.
| | - Hong Liu
- Institute of Environmental Microbiology, College of Resources and Environment, Fujian Agriculture & Forestry University, Fuzhou 350002, China
| | - Christopher Rensing
- Institute of Environmental Microbiology, College of Resources and Environment, Fujian Agriculture & Forestry University, Fuzhou 350002, China
| | - ZhiLian Fan
- Rural Energy and Environment Agency, Ministry of Agriculture and Rural Affairs, Beijing 100125, China
| | - RenWei Feng
- Institute of Environmental Microbiology, College of Resources and Environment, Fujian Agriculture & Forestry University, Fuzhou 350002, China.
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11
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Lu HL, Nkoh JN, Abdulaha-Al Baquy M, Dong G, Li JY, Xu RK. Plants alter surface charge and functional groups of their roots to adapt to acidic soil conditions. Environ Pollut 2020; 267:115590. [PMID: 33254607 DOI: 10.1016/j.envpol.2020.115590] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2020] [Revised: 08/22/2020] [Accepted: 08/31/2020] [Indexed: 05/27/2023]
Abstract
The rapid increase in soil acidification rate has led to a decrease in global agricultural productivity owing to the debilitating effects of Al and Mn toxicities. In this study, we investigated the adaptation of plants to acidic conditions by examining the behavior of plant roots grown in hydroponic solution and pot experiments at different pHs. The Mn(II) sorption by the roots was investigated and the mechanisms involved were deduced by analyzing the changes in the zeta potential and functional groups on the root surface. The exchangeable, complexed, and precipitated Mn(II) on plant roots were extracted sequentially with 1 M KNO3, 0.05 M EDTA-2Na, and 0.01 M HCl. The results of hydroponic experiment indicated that plant roots subjected to NH4+ treatment carried lower negative charge and fewer functional groups owing to acidic pH condition induced by NH4+ uptake of roots, when compared with plant roots treated with NO3-. Similarly, in pot experiments, the surface negative charge and functional groups of plant roots cultured in soils with lower pH were fewer than those on plant roots cultured in soils with higher pH, with the former presenting less exchangeable and complexed Mn(II) sorption than the latter. Thus, alterations in the charge properties and number of functional groups on the surface of plant roots are some of the mechanisms used by plants to adapt to acidic soil condition.
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Affiliation(s)
- Hai-Long Lu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, P.O. Box 821, Nanjing, China; College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jackson Nkoh Nkoh
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, P.O. Box 821, Nanjing, China; College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - M Abdulaha-Al Baquy
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, P.O. Box 821, Nanjing, China; College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Ge Dong
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, P.O. Box 821, Nanjing, China; College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jiu-Yu Li
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, P.O. Box 821, Nanjing, China
| | - Ren-Kou Xu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, P.O. Box 821, Nanjing, China; College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China.
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12
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Li P, Xiao Z, Sun J, Oyang X, Xie X, Li Z, Tian X, Li J. Metabolic regulations in lettuce root under combined exposure to perfluorooctanoic acid and perfluorooctane sulfonate in hydroponic media. Sci Total Environ 2020; 726:138382. [PMID: 32481221 DOI: 10.1016/j.scitotenv.2020.138382] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Revised: 03/27/2020] [Accepted: 03/31/2020] [Indexed: 06/11/2023]
Abstract
Per- and polyfluoroalkyl substances (PFASs) have been detected in many agricultural products in contaminated fields and in supply chains. Roots are the main organ in plants to uptake and bio-accumulate PFASs, but the changes of metabolic regulation in roots by PFASs are largely unexplored. Here, lettuce exposed to perfluorooctanoic acid (PFOA) and perfluorooctane sulfonate (PFOS) at different concentrations (500, 1000, 2000 and 5000 ng/L) was investigated via metabolomics. Many key metabolites, such as antioxidants, lipids, amino acids, fatty acids, carbohydrates, linolenic acid derivatives, purine and nucleosides, were significantly altered. Tyrosine metabolism, purine metabolism, isoquinoline alkaloid biosynthesis and terpenoid backbone biosynthesis were altered in roots by PFOA and PFOS. Tricarboxylic acid cycle was perturbed by 5000 ng/L exposure. Activation of antioxidant defense pathways, reallocation of carbon and nitrogen metabolism, regulation of energy metabolism and purine metabolism were reprogrammed in roots. Lettuce employed multiple strategies to increase tolerance to PFOA and PFOS, which includes the adjustment of membrane composition, elevation of inorganic nitrogen fixation and respiration, accumulation of sucrose and regulation of signaling molecules. The results of this study offer insights into the molecular reprogramming of plant roots in response to PFAS exposure and provide important information for the risk assessment of PFASs in environment.
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Affiliation(s)
- Pengyang Li
- Department of Municipal and Environmental Engineering, Beijing Jiaotong University, Beijing 100044, China; Laboratory of Quality and Safety Risk Assessments for Agro-products on Environmental Factors (Beijing), Ministry of Agriculture and Rural Affairs, 100029, China
| | - Zhiyong Xiao
- Laboratory of Quality and Safety Risk Assessments for Agro-products on Environmental Factors (Beijing), Ministry of Agriculture and Rural Affairs, 100029, China; Beijing Municipal Station of Agro-Environmental Monitoring, 100029, China
| | - Jiang Sun
- Laboratory of Quality and Safety Risk Assessments for Agro-products on Environmental Factors (Beijing), Ministry of Agriculture and Rural Affairs, 100029, China; Beijing Municipal Station of Agro-Environmental Monitoring, 100029, China
| | - Xihui Oyang
- Laboratory of Quality and Safety Risk Assessments for Agro-products on Environmental Factors (Beijing), Ministry of Agriculture and Rural Affairs, 100029, China; Beijing Municipal Station of Agro-Environmental Monitoring, 100029, China
| | - Xiaocan Xie
- Department of Vegetable Science, Beijing Key laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, College of Horticulture, China Agricultural University, Beijing 100193, China
| | - Zhifang Li
- Department of Vegetable Science, Beijing Key laboratory of Growth and Developmental Regulation for Protected Vegetable Crops, College of Horticulture, China Agricultural University, Beijing 100193, China
| | - Xiujun Tian
- Department of Municipal and Environmental Engineering, Beijing Jiaotong University, Beijing 100044, China
| | - Jiuyi Li
- Department of Municipal and Environmental Engineering, Beijing Jiaotong University, Beijing 100044, China.
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13
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Perlikowski D, Augustyniak A, Skirycz A, Pawłowicz I, Masajada K, Michaelis ÏN, Kosmala A. Efficient root metabolism improves drought resistance of Festuca arundinacea. Plant Cell Physiol 2020; 61:492-504. [PMID: 31738419 DOI: 10.1093/pcp/pcz215] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2019] [Accepted: 11/13/2019] [Indexed: 05/20/2023]
Abstract
Festuca arundinacea is a model to work on the mechanisms of drought resistance in grasses. The crucial components of that resistance still remain not fully recognized. It was suggested that deep root system could be a crucial trait for drought avoidance strategy but the other components of root performance under water deficit have not paid much attention of scientists. In this study, two genotypes of F. arundinacea with a different ability to withstand soil water deficit were selected to perform comprehensive research, including analysis of root architecture, phytohormones, proteome, primary metabolome and lipidome under progressive stress conditions, followed by a rewatering period. The experiments were performed in tubes, thus enabling undisturbed development of root systems. We demonstrated that long roots are not sufficient to perfectly avoid drought damage in F. arundinacea and to withstand adverse environmental conditions without a disturbed cellular metabolism (with respect to leaf relative water potential and cellular membrane integrity). Furthermore, we proved that metabolic performance of roots is as crucial as its architecture under water deficit, to cope with drought stress via avoidance, tolerance and regeneration strategies. We believe that the presented studies could be a good reference for the other, more applied experiments, in closely related species.
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Affiliation(s)
- Dawid Perlikowski
- Department of Environmental Stress Biology, Institute of Plant Genetics, Polish Academy of Sciences, Strzeszyńska 34, Poznan 60-479, Poland
| | - Adam Augustyniak
- Department of Environmental Stress Biology, Institute of Plant Genetics, Polish Academy of Sciences, Strzeszyńska 34, Poznan 60-479, Poland
| | - Aleksandra Skirycz
- Department of Molecular Physiology, Max-Planck Institute of Molecular Plant Physiology, Am M�hlenberg 1, Potsdam-Golm 14476, Germany
| | - Izabela Pawłowicz
- Department of Environmental Stress Biology, Institute of Plant Genetics, Polish Academy of Sciences, Strzeszyńska 34, Poznan 60-479, Poland
| | - Katarzyna Masajada
- Department of Environmental Stress Biology, Institute of Plant Genetics, Polish Academy of Sciences, Strzeszyńska 34, Poznan 60-479, Poland
| | - Ï Nne Michaelis
- Department of Molecular Physiology, Max-Planck Institute of Molecular Plant Physiology, Am M�hlenberg 1, Potsdam-Golm 14476, Germany
| | - Arkadiusz Kosmala
- Department of Environmental Stress Biology, Institute of Plant Genetics, Polish Academy of Sciences, Strzeszyńska 34, Poznan 60-479, Poland
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14
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Ruiz S, Koebernick N, Duncan S, Fletcher DM, Scotson C, Boghi A, Marin M, Bengough AG, George TS, Brown LK, Hallett PD, Roose T. Significance of root hairs at the field scale - modelling root water and phosphorus uptake under different field conditions. Plant Soil 2019; 447:281-304. [PMID: 32214504 PMCID: PMC7062663 DOI: 10.1007/s11104-019-04308-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Accepted: 09/13/2019] [Indexed: 05/22/2023]
Abstract
ABSTRACT BACKGROUND AND AIMS Root hairs play a significant role in phosphorus (P) extraction at the pore scale. However, their importance at the field scale remains poorly understood. METHODS This study uses a continuum model to explore the impact of root hairs on the large-scale uptake of P, comparing root hair influence under different agricultural scenarios. High vs low and constant vs decaying P concentrations down the soil profile are considered, along with early vs late precipitation scenarios. RESULTS Simulation results suggest root hairs accounted for 50% of total P uptake by plants. Furthermore, a delayed initiation time of precipitation potentially limits the P uptake rate by over 50% depending on the growth period. Despite the large differences in the uptake rate, changes in the soil P concentration in the domain due to root solute uptake remains marginal when considering a single growth season. However, over the duration of 6 years, simulation results showed that noticeable differences arise over time. CONCLUSION Root hairs are critical to P capture, with uptake efficiency potentially enhanced by coordinating irrigation with P application during earlier growth stages of crops.
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Affiliation(s)
- S Ruiz
- 1Bioengineering Science Research Group, Department of Mechanical Engineering, School of Engineering, Faculty of Engineering and Physical Science, University of Southampton, Southampton, SO17 1BJ UK
| | - N Koebernick
- 1Bioengineering Science Research Group, Department of Mechanical Engineering, School of Engineering, Faculty of Engineering and Physical Science, University of Southampton, Southampton, SO17 1BJ UK
- 5Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Universitaetplatz 10, 06108 Halle (Saale), Germany
| | - S Duncan
- 1Bioengineering Science Research Group, Department of Mechanical Engineering, School of Engineering, Faculty of Engineering and Physical Science, University of Southampton, Southampton, SO17 1BJ UK
| | - D McKay Fletcher
- 1Bioengineering Science Research Group, Department of Mechanical Engineering, School of Engineering, Faculty of Engineering and Physical Science, University of Southampton, Southampton, SO17 1BJ UK
| | - C Scotson
- 1Bioengineering Science Research Group, Department of Mechanical Engineering, School of Engineering, Faculty of Engineering and Physical Science, University of Southampton, Southampton, SO17 1BJ UK
| | - A Boghi
- 1Bioengineering Science Research Group, Department of Mechanical Engineering, School of Engineering, Faculty of Engineering and Physical Science, University of Southampton, Southampton, SO17 1BJ UK
| | - M Marin
- 2School of Biological Sciences, University of Aberdeen, Aberdeen, AB24 3UU UK
| | - A G Bengough
- 3Ecological Sciences Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA UK
- 4School of Science and Engineering, University of Dundee, Dundee, DD1 4HN UK
| | - T S George
- 3Ecological Sciences Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA UK
| | - L K Brown
- 3Ecological Sciences Group, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA UK
| | - P D Hallett
- 2School of Biological Sciences, University of Aberdeen, Aberdeen, AB24 3UU UK
| | - T Roose
- 1Bioengineering Science Research Group, Department of Mechanical Engineering, School of Engineering, Faculty of Engineering and Physical Science, University of Southampton, Southampton, SO17 1BJ UK
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15
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Bi Y, Zhang J, Song Z, Wang Z, Qiu L, Hu J, Gong Y. Arbuscular mycorrhizal fungi alleviate root damage stress induced by simulated coal mining subsidence ground fissures. Sci Total Environ 2019; 652:398-405. [PMID: 30366339 DOI: 10.1016/j.scitotenv.2018.10.249] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2018] [Revised: 10/09/2018] [Accepted: 10/18/2018] [Indexed: 05/29/2023]
Abstract
Coal mining results in surface subsidence and induces the development of ground fissures that damage surrounding plant roots. Very few studies have explored the stress of root damage caused by ground fissures and whether arbuscular mycorrhizal fungi (AMF) can relieve root damage stress induced by ground fissures. In the present study we simulated ground fissure induced root damage, examined the resultant changes in endogenous hormones, root system morphology, leaf area, leaf chlorophyll content, nutrient content and biomass of maize, and examined the ameliorative effects of AMF on maize with root damage. Ground fissures led to significantly higher levels of endogenous abscisic acid (ABA) but significantly reduced levels of indole-3-acetic acid (IAA), gibberellins (GA) and cytokinin (CTK). In addition, ground fissures led to significantly reduced root biomass, total root length, root tip number, total root volume, plant nutrient content, leaf chlorophyll content and leaf area. The shoot biomass of root damaged maize decreased significantly by 46%. By contrast, AMF increased IAA and CTK levels in maize roots, reduced ABA levels, improved the hormone balance of damaged plants, increased total root length, root tip number, total root volume, leaf area and leaf chlorophyll content, increased nutrient content and increased shoot biomass by 34%. Overall, by simulating coal mining subsidence ground fissures, the study investigated the effects of root damage stress on plant biomass, found that AMF can alleviate the mechanical damages to the root system, and provided a theoretical basis for microbial remediation in areas subject to subsidence due to coal mining.
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Affiliation(s)
- Yinli Bi
- State Key Laboratory of Coal Resources and Safe Mining, China University of Mining and Technology (Beijing), Beijing 100083, China.
| | - Jian Zhang
- State Key Laboratory of Coal Resources and Safe Mining, China University of Mining and Technology (Beijing), Beijing 100083, China
| | - Ziheng Song
- State Key Laboratory of Coal Resources and Safe Mining, China University of Mining and Technology (Beijing), Beijing 100083, China
| | - Zhigang Wang
- State Key Laboratory of Coal Resources and Safe Mining, China University of Mining and Technology (Beijing), Beijing 100083, China
| | - Lang Qiu
- State Key Laboratory of Coal Resources and Safe Mining, China University of Mining and Technology (Beijing), Beijing 100083, China
| | - Jingjing Hu
- State Key Laboratory of Coal Resources and Safe Mining, China University of Mining and Technology (Beijing), Beijing 100083, China
| | - Yunli Gong
- State Key Laboratory of Coal Resources and Safe Mining, China University of Mining and Technology (Beijing), Beijing 100083, China
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16
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Adamatzky A, Sirakoulis GC, Martínez GJ, Baluška F, Mancuso S. On plant roots logical gates. Biosystems 2017; 156-157:40-45. [PMID: 28428118 DOI: 10.1016/j.biosystems.2017.04.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2016] [Revised: 04/03/2017] [Accepted: 04/06/2017] [Indexed: 12/23/2022]
Abstract
Theoretical constructs of logical gates implemented with plant roots are morphological computing asynchronous devices. Values of Boolean variables are represented by plant roots. A presence of a plant root at a given site symbolises the logical True, an absence the logical False. Logical functions are calculated via interaction between roots. Two types of two-inputs-two-outputs gates are proposed: a gate 〈x, y〉→〈xy, x+y〉 where root apexes are guided by gravity and a gate 〈x,y〉→〈x¯y,x〉 where root apexes are guided by humidity. We propose a design of binary half-adder based on the gates.
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Affiliation(s)
| | - Georgios Ch Sirakoulis
- Department of Electrical & Computer Engineering, Democritus University of Thrace, Xanthi, Greece; Unconventional Computing Laboratory, UWE, Bristol, UK
| | - Genaro J Martínez
- Superior School of Computer Sciences, National Polytechnic Institute, Mexico; Unconventional Computing Laboratory, UWE, Bristol, UK
| | - Frantisek Baluška
- Institute of Cellular and Molecular Botany, University of Bonn, Germany
| | - Stefano Mancuso
- International Laboratory of Plant Neurobiology, University of Florence, Italy
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17
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Xia B, Sun Z, Wang L, Zhou Q, Huang X. Analysis of the combined effects of lanthanum and acid rain, and their mechanisms, on nitrate reductase transcription in plants. Ecotoxicol Environ Saf 2017; 138:170-178. [PMID: 28056417 DOI: 10.1016/j.ecoenv.2016.12.034] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2016] [Revised: 12/24/2016] [Accepted: 12/27/2016] [Indexed: 06/06/2023]
Abstract
Rare earth element (REE) pollution and acid rain are major global environmental concerns, and their spatial distributions overlap. Thus, both forms of pollution combine to act on plants. Nitrogen is important for plant growth, and nitrate reductase (NR) is a key plant enzyme that catalyzes nitrogen assimilation. Studying the combined effects of REEs and acid rain on plant nitrogen-based nutrients has important environmental significance. Here, soybean (Glycine max) plants, commonly used for toxicological studies, were exposed to lanthanum (La), a REE, and acid rain to study the NR activities and NR transcriptional levels in the roots. To explain how the pollution affected the NR transcriptional level, we simultaneously observed the contents of intracellular La and nutrient elements, protoplast morphology, membrane lipid peroxidation and intracellular pH. A combined treatment of 0.08mmol/L La and pH 4.5 acid rain increased the NR activity, decreased the NR transcriptional level, increased the intracellular nutrient elements' contents and caused deformations in membrane structures. Other combined treatments significantly decreased the aforementioned parameters and caused serious damage to the membrane structures. The variation in the amplitudes of combined treatments was greater than those of individual treatments. Compared with the control and individual treatments, combined treatments increased membrane permeability, the malondialdehyde content, and intracellular H+ and La contents, and with an increasing La concentration or acid strength, the change in amplitude increased. Thus, the combined effects on NR gene transcription in soybean seedling roots were related to the intracellular nutrient elements' contents, protoplast morphology, membranous lipid peroxidation, intracellular pH and La content.
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Affiliation(s)
- Binxin Xia
- State Key Laboratory of Food Science and Technology, Jiangsu Key Laboratory of Anaerobic Biotechnology, College of Environment and Civil Engineering, Jiangnan University, Wuxi 214122, China; Jiangsu Cooperative Innovation Center of Water Treatment Technology and Materials, Suzhou University of Science and Technology, Suzhou 215009, China
| | - Zhaoguo Sun
- State Key Laboratory of Food Science and Technology, Jiangsu Key Laboratory of Anaerobic Biotechnology, College of Environment and Civil Engineering, Jiangnan University, Wuxi 214122, China; Jiangsu Cooperative Innovation Center of Water Treatment Technology and Materials, Suzhou University of Science and Technology, Suzhou 215009, China
| | - Lihong Wang
- State Key Laboratory of Food Science and Technology, Jiangsu Key Laboratory of Anaerobic Biotechnology, College of Environment and Civil Engineering, Jiangnan University, Wuxi 214122, China; Jiangsu Cooperative Innovation Center of Water Treatment Technology and Materials, Suzhou University of Science and Technology, Suzhou 215009, China
| | - Qing Zhou
- State Key Laboratory of Food Science and Technology, Jiangsu Key Laboratory of Anaerobic Biotechnology, College of Environment and Civil Engineering, Jiangnan University, Wuxi 214122, China; Jiangsu Cooperative Innovation Center of Water Treatment Technology and Materials, Suzhou University of Science and Technology, Suzhou 215009, China.
| | - Xiaohua Huang
- Jiangsu Collaborative Innovation Center of Biomedical Functional Materials, Jiangsu Key Laboratory of Biomedical Materials, College of Chemistry and Materials Science, Nanjing Normal University, Nanjing 210046, China.
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18
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Jeudy C, Adrian M, Baussard C, Bernard C, Bernaud E, Bourion V, Busset H, Cabrera-Bosquet L, Cointault F, Han S, Lamboeuf M, Moreau D, Pivato B, Prudent M, Trouvelot S, Truong HN, Vernoud V, Voisin AS, Wipf D, Salon C. RhizoTubes as a new tool for high throughput imaging of plant root development and architecture: test, comparison with pot grown plants and validation. Plant Methods 2016; 12:31. [PMID: 27279895 PMCID: PMC4897935 DOI: 10.1186/s13007-016-0131-9] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2016] [Accepted: 05/31/2016] [Indexed: 05/19/2023]
Abstract
BACKGROUND In order to maintain high yields while saving water and preserving non-renewable resources and thus limiting the use of chemical fertilizer, it is crucial to select plants with more efficient root systems. This could be achieved through an optimization of both root architecture and root uptake ability and/or through the improvement of positive plant interactions with microorganisms in the rhizosphere. The development of devices suitable for high-throughput phenotyping of root structures remains a major bottleneck. RESULTS Rhizotrons suitable for plant growth in controlled conditions and non-invasive image acquisition of plant shoot and root systems (RhizoTubes) are described. These RhizoTubes allow growing one to six plants simultaneously, having a maximum height of 1.1 m, up to 8 weeks, depending on plant species. Both shoot and root compartment can be imaged automatically and non-destructively throughout the experiment thanks to an imaging cabin (RhizoCab). RhizoCab contains robots and imaging equipment for obtaining high-resolution pictures of plant roots. Using this versatile experimental setup, we illustrate how some morphometric root traits can be determined for various species including model (Medicago truncatula), crops (Pisum sativum, Brassica napus, Vitis vinifera, Triticum aestivum) and weed (Vulpia myuros) species grown under non-limiting conditions or submitted to various abiotic and biotic constraints. The measurement of the root phenotypic traits using this system was compared to that obtained using "classic" growth conditions in pots. CONCLUSIONS This integrated system, to include 1200 Rhizotubes, will allow high-throughput phenotyping of plant shoots and roots under various abiotic and biotic environmental conditions. Our system allows an easy visualization or extraction of roots and measurement of root traits for high-throughput or kinetic analyses. The utility of this system for studying root system architecture will greatly facilitate the identification of genetic and environmental determinants of key root traits involved in crop responses to stresses, including interactions with soil microorganisms.
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Affiliation(s)
- Christian Jeudy
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | - Marielle Adrian
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | | | - Céline Bernard
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | - Eric Bernaud
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | - Virginie Bourion
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | - Hughes Busset
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | | | - Frédéric Cointault
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | - Simeng Han
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | - Mickael Lamboeuf
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | - Delphine Moreau
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | - Barbara Pivato
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | - Marion Prudent
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | - Sophie Trouvelot
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | - Hoai Nam Truong
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | - Vanessa Vernoud
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | - Anne-Sophie Voisin
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | - Daniel Wipf
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
| | - Christophe Salon
- />UMR 1347 Agroécologie AgroSup/INRA/uB, 17 Rue Sully, BP 86510, 21065 Dijon Cedex, France
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19
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Horn IR, van Rijn M, Zwetsloot TJJ, Basmagi S, Dirks-Mulder A, van Leeuwen WB, Ravensberg WJ, Gravendeel B. Development of a multiplex Q-PCR to detect Trichoderma harzianum Rifai strain T22 in plant roots. J Microbiol Methods 2016; 121:44-9. [PMID: 26747625 DOI: 10.1016/j.mimet.2015.12.014] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2015] [Revised: 12/17/2015] [Accepted: 12/17/2015] [Indexed: 11/16/2022]
Abstract
The fungal species Trichoderma harzianum is widely used as a biological agent in crop protection. To verify the continued presence of this fungus on plant roots manually inoculated with T. harzianum strain T22, a Q-PCR was designed using specific probes for this particular strain. To develop these molecular diagnostic tools, genome mining was first carried out to retrieve putative new regions by which different strains of T. harzianum could be distinguished. Subsequently, Sanger sequencing of the L-aminoacid oxidase gene (aox1) in T. harzianum was applied to determine the mutations differing between various strains isolated from the Trichoderma collection of Koppert Biological Systems. Based on the sequence information obtained, a set of hydrolysis probes was subsequently developed which discriminated T. harzianum T22 strains varying in only a single nucleotide. Probes designed for two strains uniquely recognized the respective strains in Q-PCR with a detection limit of 12,5ng DNA. Titration assays in which T. harzianum DNA from distinct strains was varied further underscored the specificity of the probes. Lastly, fungal DNA extracted from roots of greenhouse cultured tomato plants was analyzed using the probe-based assay. DNA from T. harzianum strain T22 could readily be identified on roots of greenhouse reared tomato plants inoculated with varying concentrations up to one week after treatment with a detection limit of 3e6 colony forming units of T. harzianum T22. We conclude that the Q-PCR method is a reliable and robust method for assessing the presence and quantity of T. harzianum strain T22 in manually inoculated plant material. Our method provides scope for the development of DNA based strain specific identification of additional strains of Trichoderma and other fungal biological control agents.
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Affiliation(s)
- Ivo R Horn
- University of Applied Sciences Leiden, Zernikedreef 11, 2333, CK, Leiden, The Netherlands
| | - Menno van Rijn
- Koppert Biological Systems, Veilingweg 14, 2651, BE, Berkel en Rodenrijs, The Netherlands
| | - Tom J J Zwetsloot
- University of Applied Sciences Leiden, Zernikedreef 11, 2333, CK, Leiden, The Netherlands
| | - Said Basmagi
- University of Applied Sciences Leiden, Zernikedreef 11, 2333, CK, Leiden, The Netherlands
| | - Anita Dirks-Mulder
- University of Applied Sciences Leiden, Zernikedreef 11, 2333, CK, Leiden, The Netherlands
| | - Willem B van Leeuwen
- University of Applied Sciences Leiden, Zernikedreef 11, 2333, CK, Leiden, The Netherlands
| | - Willem J Ravensberg
- Koppert Biological Systems, Veilingweg 14, 2651, BE, Berkel en Rodenrijs, The Netherlands
| | - Barbara Gravendeel
- University of Applied Sciences Leiden, Zernikedreef 11, 2333, CK, Leiden, The Netherlands; Naturalis Biodiversity Center, Darwinweg 2, 2333, CR Leiden, The Netherlands; Institute Biology Leiden, Leiden University, Sylviusweg 72, 2333, BE, Leiden, The Netherlands.
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20
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Cardi M, Castiglia D, Ferrara M, Guerriero G, Chiurazzi M, Esposito S. The effects of salt stress cause a diversion of basal metabolism in barley roots: possible different roles for glucose-6-phosphate dehydrogenase isoforms. Plant Physiol Biochem 2015; 86:44-54. [PMID: 25461699 DOI: 10.1016/j.plaphy.2014.11.001] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2014] [Accepted: 11/02/2014] [Indexed: 05/03/2023]
Abstract
In this study the effects of salt stress and nitrogen assimilation have been investigated in roots of hydroponically-grown barley plants exposed to 150 mM NaCl, in presence or absence of ammonium as the sole nitrogen source. Salt stress determines a diversion of root metabolism towards the synthesis of osmolytes, such as glycine betaine and proline, and increased levels of reduced glutathione. The metabolic changes triggered by salt stress result in a decrease in both activities and protein abundance of key enzymes, namely GOGAT and PEP carboxylase, and in a slight increase in HSP70. These variations would enhance the requirement for reductants supplied by the OPPP, consistently with the observed increase in total G6PDH activity. The involvement and occurrence of the different G6PDH isoforms have been investigated, and the kinetic properties of partially purified cytosolic and plastidial G6PDHs determined. Bioinformatic analyses examining co-expression profiles of G6PDHs in Arabidopsis and barley corroborate the data presented. Moreover, the gene coding for the root P2-G6PDH isoform was fully sequenced; the biochemical properties of the corresponding protein were examined experimentally. The results are discussed in the light of the possible distinct roles and regulation of the different G6PDH isoforms during salt stress in barley roots.
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Affiliation(s)
- Manuela Cardi
- Università di Napoli Federico II, Dipartimento di Biologia, Via Cinthia, 6, I-80126 Napoli, Italy
| | - Daniela Castiglia
- Università di Napoli Federico II, Dipartimento di Biologia, Via Cinthia, 6, I-80126 Napoli, Italy
| | - Myriam Ferrara
- Università di Napoli Federico II, Dipartimento di Biologia, Via Cinthia, 6, I-80126 Napoli, Italy
| | - Gea Guerriero
- Università di Napoli Federico II, Dipartimento di Biologia, Via Cinthia, 6, I-80126 Napoli, Italy
| | - Maurizio Chiurazzi
- Institute of Biosciences and BioResources - CNR, Via P. Castellino 111, I-80128 Napoli, Italy
| | - Sergio Esposito
- Università di Napoli Federico II, Dipartimento di Biologia, Via Cinthia, 6, I-80126 Napoli, Italy.
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Scholl P, Leitner D, Kammerer G, Loiskandl W, Kaul HP, Bodner G. Root induced changes of effective 1D hydraulic properties in a soil column. Plant Soil 2014; 381:193-213. [PMID: 25834290 PMCID: PMC4372835 DOI: 10.1007/s11104-014-2121-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2013] [Accepted: 04/11/2014] [Indexed: 05/04/2023]
Abstract
AIMS Roots are essential drivers of soil structure and pore formation. This study aimed at quantifying root induced changes of the pore size distribution (PSD). The focus was on the extent of clogging vs. formation of pores during active root growth. METHODS Parameters of Kosugi's lognormal PSD model were determined by inverse estimation in a column experiment with two cover crops (mustard, rye) and an unplanted control. Pore dynamics were described using a convection-dispersion like pore evolution model. RESULTS Rooted treatments showed a wider range of pore radii with increasing volumes of large macropores >500 μm and micropores <2.5 μm, while fine macropores, mesopores and larger micropores decreased. The non-rooted control showed narrowing of the PSD and reduced porosity over all radius classes. The pore evolution model accurately described root induced changes, while structure degradation in the non-rooted control was not captured properly. Our study demonstrated significant short term root effects with heterogenization of the pore system as dominant process of root induced structure formation. CONCLUSIONS Pore clogging is suggested as a partial cause for reduced pore volume. The important change in micro- and large macropores however indicates that multiple mechanic and biochemical processes are involved in root-pore interactions.
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Affiliation(s)
- P. Scholl
- Department of Crop Sciences, Division of Agronomy, University of Natural Resources and Life Sciences, Konrad-Lorenz-Strasse 24, 3430 Tulln, Austria
- Institute of Hydraulics and Rural Water Management, University of Natural Resources and Life Sciences, Muthgasse 18, 1190 Vienna, Austria
| | - D. Leitner
- Computational Science Center, University of Vienna, Oskar Morgenstern-Platz 1, 1090 Vienna, Austria
| | - G. Kammerer
- Institute of Hydraulics and Rural Water Management, University of Natural Resources and Life Sciences, Muthgasse 18, 1190 Vienna, Austria
| | - W. Loiskandl
- Institute of Hydraulics and Rural Water Management, University of Natural Resources and Life Sciences, Muthgasse 18, 1190 Vienna, Austria
| | - H.-P. Kaul
- Department of Crop Sciences, Division of Agronomy, University of Natural Resources and Life Sciences, Konrad-Lorenz-Strasse 24, 3430 Tulln, Austria
| | - G. Bodner
- Department of Crop Sciences, Division of Agronomy, University of Natural Resources and Life Sciences, Konrad-Lorenz-Strasse 24, 3430 Tulln, Austria
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22
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Burgess SSO, Adams MA, Turner NC, White DA, Ong CK. Tree roots: conduits for deep recharge of soil water. Oecologia 2001; 126:158-165. [PMID: 28547613 DOI: 10.1007/s004420000501] [Citation(s) in RCA: 126] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/1999] [Accepted: 07/19/2000] [Indexed: 10/27/2022]
Abstract
In previous work, we provided evidence from sap flow measurements that when root systems span soil layers of different moisture content, water is redistributed by roots in the direction of the difference in water potential. In addition to the phenomenon termed "hydraulic lift", where water is redistributed from depth to dry topsoil, the process of "hydraulic redistribution" includes downward transfer of water when the surface layers of soils with low permeability become wet after rainfall. In this paper, we support our previous findings with evidence from measurements of soil water and estimate the quantities of water transferred to depth following rain. Amounts of water stored at depth are not likely to be significant for drought avoidance by plants. However, downward transfer of water may be important to plant establishment and the reduction of waterlogging in certain soil types.
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Affiliation(s)
- Stephen S O Burgess
- Department of Botany, University of Western Australia, 6907, Nedlands, WA, Australia
| | - Mark A Adams
- Department of Botany, University of Western Australia, 6907, Nedlands, WA, Australia
| | - Neil C Turner
- CSIRO Plant Industry, 6014, Private Bag, P.O., Wembley, WA, Australia
| | - Don A White
- CSIRO Forestry and Forest Products, Private Bag, P.O., 6014, Wembley, WA, Australia
| | - Chin K Ong
- International Centre for Research in Agroforestry (ICRAF), PO Box 30677, Nairobi, Kenya
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