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Chen JS, Tsai HC, Nagarajan V, Hsu BM. Adenovirus in fishery harbours and identification of contamination sources. WATER RESEARCH 2022; 219:118538. [PMID: 35526430 DOI: 10.1016/j.watres.2022.118538] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2021] [Revised: 04/29/2022] [Accepted: 04/30/2022] [Indexed: 06/14/2023]
Abstract
Adenoviruses (AdVs) are a major cause of clinical infections and have been proposed as indicators of water quality. However, quantitative data on the environmental prevalence of AdVs is lacking. We investigated the prevalence, distribution, seasonal occurrence, quantity, and genotype of AdVs in 13 fishing harbours in Taiwan. AdVs in the water samples were isolated by membrane filtration and the AdV DNA was extracted. Next, AdVs were detected using nested polymerase chain reaction. Genotyping and phylogenetic analysis were performed to identify various AdV genotypes present in the water samples. The F species human AdV (HAdV) serotype 41 (63.6%) and C species porcine AdV (PAdV) serotype 5 (33.3%) were more prevalent than the other serotypes. The prevalence of AdVs was highest in the fall, followed by in the spring and summer. Among the fishing harbours, the highest detection rate of AdVs was observed in Yenpudongang in all seasons. However, Puoziliao was the only site at which AdVs were not detected during the study period. AdV detection at sampling sites may be correlated with sewage and livestock wastewater discharge via outflow of nearby rivers to fishing ports. Statistical analysis (Mann-Whitney U test) based on data from water quality indicators revealed that the presence of AdVs was significantly associated with the heterotrophic plate count, pH, and salinity. Human and swine population data from nearby local townships and river/drainage basins were collected from the Taiwan Central Government's website. The data were analyzed using Spearman's rank correlation coefficient to determine the relationship between the prevalence of AdVs, HAdVs, and PAdVs in fishing harbours, and microbial water quality indicators. Statistical evidence indicated that the detection levels of HAdVs and PAdVs in fishing harbours were mainly associated with human and swine populations in the corresponding river/drainage basin, respectively. Additionally, the swine population in the river/drainage basin was positively correlated with microbial water quality indicators.
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Affiliation(s)
- Jung-Sheng Chen
- Department of Medical Research, E-Da Hospital, Kaohsiung, Taiwan
| | - Hsin-Chi Tsai
- Department of Psychiatry, School of Medicine, Tzu Chi University, Hualien, Taiwan; Department of Psychiatry, Tzu-Chi General Hospital, Hualien, Taiwan
| | - Viji Nagarajan
- Department of Earth and Environmental Sciences, National Chung Cheng University, 168 University Road, Minhsiung Township, Chiayi 62102, Taiwan
| | - Bing-Mu Hsu
- Department of Earth and Environmental Sciences, National Chung Cheng University, 168 University Road, Minhsiung Township, Chiayi 62102, Taiwan.
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Surveillance of Adenovirus and Norovirus Contaminants in the Water and Shellfish of Major Oyster Breeding Farms and Fishing Ports in Taiwan. Pathogens 2022; 11:pathogens11030316. [PMID: 35335640 PMCID: PMC8954279 DOI: 10.3390/pathogens11030316] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Revised: 02/26/2022] [Accepted: 02/28/2022] [Indexed: 02/04/2023] Open
Abstract
The enteric viruses, including adenovirus (AdVs) and norovirus (NoVs), in shellfish is a significant food safety risk. This study investigated the prevalence, seasonal occurrence, genetic diversity, and quantification of AdVs and NoVs in the water and cultured shellfish samples at the four major coastal oyster breeding farms (COBF), five major fishing ports (FP), and their markets in Taiwan. The AdVs/NoVs in the water and shellfish samples were isolated by the membrane filtration and direct elution methods. The RNA of NoVs was reverse-transcribed into complementary DNA through reverse transcription reaction. Further NoVs and AdVs were detected using nested PCR. A higher detection rate was recorded in the low-temperature period than high-temperature. Detection difference was noted between nested PCR and qPCR outcomes for AdVs. The total detection rate of AdVs was higher in the water samples (COBF-40.6%, FP 20%) than the shellfish samples (COBF-11.7% and FP 6.3%). The AdVs load in the water and shellfish samples ranged from 1.23 × 103 to 1.00 × 106 copies/L and 3.57 × 103 to 4.27 × 104 copies/100g, respectively. The total detection of NoVs was highest in the water samples of the FP and their market shellfish samples (11.1% and 3.2%, respectively). Genotyping and phylogenetic analysis were identified as the prevalent AdVs and NoVs genotypes in the water and shellfish samples: A species HAdVs serotype 12; F species HAdVs serotype 41; and C species PAdVs serotype 5 (NoVs GI.2, GI.3 and GII.2). No significant differences were observed between the presence of AdVs, and all of the water quality parameters evaluated (heterotrophic plate count, water temperature, turbidity, pH, salinity, and dissolved oxygen). The virus contamination occurs mainly due to the direct discharge of domestic sewage, livestock farm, and fishing market wastewater into the coastal environment. Thus, this study suggested framing better estuarine management to prevent AdVs/NoVs transmission in water and cultured/distributed shellfish.
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Seasonal Patterns of Enteric Pathogens in Colombian Indigenous People—A More Pronounced Effect on Bacteria Than on Parasites. Pathogens 2022; 11:pathogens11020214. [PMID: 35215157 PMCID: PMC8875320 DOI: 10.3390/pathogens11020214] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Revised: 02/04/2022] [Accepted: 02/04/2022] [Indexed: 11/20/2022] Open
Abstract
Enteric pathogens, which are frequently food- and waterborne transmitted, are highly abundant in Indigenous people living in remote rural areas of Colombia. As the frequency of gastroenteritis in the tropics shows seasonal differences, we analyzed variations of pathogen patterns in the stool samples of a Colombian Indigenous tribe called Wiwa during the dry (n = 105) and the rainy (n = 227) season, applying real-time PCR from stool samples and statistical analysis based on a multi-variable model. Focusing on bacterial pathogens, increased detection rates could be confirmed for enteropathogenic, enterotoxigenic and enteroaggregative Escherichia coli with a tendency for an increase in Campylobacter jejuni detections during the rainy season, while there was no seasonal effect on the carriage of Tropheryma whipplei. Salmonellae were recorded during the rainy season only. A differentiated pattern was seen for the assessed parasites. Entamoeba histolytica, Necator americanus and Trichuris trichiura were increasingly detected during the rainy season, but not Ascaris lumbricoides, Giardia duodenalis, Hymenolepis nana, Strongyloides stercoralis, and Taenia solium, respectively. Increased detection rates during the dry season were not recorded. Negative associations were found for Campylobacter jejuni and Giardia duodenalis with age and for Tropheryma whipplei with the body mass index, respectively. Positive associations of enteropathogenic Escherichia coli and Taenia solium detections were observed with age. In conclusion, facilitating effects of the tropical rainy season were more pronounced on bacterial enteric pathogens compared to enteropathogenic parasites.
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Nagarajan V, Chen J, Hsu B, Hsu G, Wang J, Hussain B. Prevalence, Distribution, and Genotypes of Adenovirus and Norovirus in the Puzi River and Its Tributaries and the Surrounding Areas in Taiwan. GEOHEALTH 2021; 5:e2021GH000465. [PMID: 34977444 PMCID: PMC8686652 DOI: 10.1029/2021gh000465] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Revised: 11/18/2021] [Accepted: 11/27/2021] [Indexed: 05/04/2023]
Abstract
This study investigated the prevalence, distribution, and genotypes of adenoviruses (AdVs) and noroviruses (NoVs) in the Puzi River and surrounding areas in Taiwan. The viruses in the water samples were isolated using the membrane filtration method and the viral nucleic acids were extracted. The RNA of NoVs was reverse-transcribed into complementary DNA using reverse transcriptase-polymerase chain reaction. AdVs and NoVs were detected using nested PCR. Genotyping and phylogenetic analyses were performed to identify the various viral genotypes in the water samples. Human adenovirus (HAdVs) and porcine adenovirus (PAdVs) were the predominant genotypes in the water samples. The prevalence of F species HAdVs serotype 41 (79.2%) and C species PAdVs serotype 5 (18.1%) was higher than that of other serotypes. Among NoVs, genogroup GII was more prevalent than GI. In particular, GII.4 (21.2%) and GII.17 (18.2%) were the predominant genotypes, which was consistent with the clinical findings. The prevalence of both AdVs and NoVs was higher in the winter than spring, summer and autumn seasons. AdVs and NoVs detection results were statistically analyzed by investigating their association with water quality indicators. The results revealed that the presence of AdVs was significantly correlated with the heterotrophic bacterial count, total coliform Escherichia coli, turbidity, salinity, and dissolved oxygen. Meanwhile, the presence of NoVs was only significantly correlated with temperature, pH, and dissolved oxygen. Microbial pollution sources may include urban runoff and discharge of water from livestock farms situated near the river and tributaries within this region of Taiwan. Future studies should include comparisons of the presence of AdVs and NoVs in these known pollution sources and water quality monitoring of these watersheds, as this will allow potential identification of pollution sources. Additionally, remediation strategies must be developed to minimize viral contamination in the river ecosystem.
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Affiliation(s)
- Viji Nagarajan
- Department of Earth and Environmental SciencesNational Chung Cheng UniversityChiayi CountyTaiwan
| | | | - Bing‐Mu Hsu
- Department of Earth and Environmental SciencesNational Chung Cheng UniversityChiayi CountyTaiwan
| | - Gwo‐Jong Hsu
- Division of Infectious DiseasesDitmanson Medical FoundationChia‐Yi Christian HospitalChiayi CountyTaiwan
| | - Jiun‐Ling Wang
- Department of Internal MedicineNational Cheng Kung University HospitalTainanTaiwan
| | - Bashir Hussain
- Department of Earth and Environmental SciencesNational Chung Cheng UniversityChiayi CountyTaiwan
- Department of Biomedical SciencesNational Chung Cheng UniversityChiayi CountyTaiwan
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Chen L, Deng Y, Dong S, Wang H, Li P, Zhang H, Chu W. The occurrence and control of waterborne viruses in drinking water treatment: A review. CHEMOSPHERE 2021; 281:130728. [PMID: 34010719 PMCID: PMC8084847 DOI: 10.1016/j.chemosphere.2021.130728] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Revised: 04/21/2021] [Accepted: 04/25/2021] [Indexed: 05/04/2023]
Abstract
As the coronavirus disease 2019 continues to spread globally, its culprit, the severe acute respiratory syndrome coronavirus 2 has been brought under scrutiny. In addition to inhalation transmission, the possible fecal-oral viral transmission via water/wastewater has also been brought under the spotlight, necessitating a timely global review on the current knowledge about waterborne viruses in drinking water treatment system - the very barrier that intercepts waterborne pathogens to terminal water users. In this article we reviewed the occurrence, concentration methods, and control strategies, also, treatment performance on waterborne viruses during drinking water treatment were summarized. Additionally, we emphasized the potential of applying the quantitative microbial risk assessment to guide drinking water treatment to mitigate the viral exposure risks, especially when the unregulated novel viral pathogens are of concern. This review paves road for better control of viruses at drinking water treatment plants to protect public health.
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Affiliation(s)
- Li Chen
- State Key Laboratory of Pollution Control and Resources Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai, China; Ministry of Education Key Laboratory of Yangtze River Water Environment, Tongji University, Shanghai, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai, China
| | - Yang Deng
- Department of Earth and Environmental Studies, Montclair State University, Montclair, NJ, USA
| | - Shengkun Dong
- Key LLaboratory of Water Cycle and Water Security in Southern China of Guangdong Higher Education Institute, School of Civil Engineering, Sun Yat-sen University, Guangdong, China
| | - Hong Wang
- State Key Laboratory of Pollution Control and Resources Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai, China; Ministry of Education Key Laboratory of Yangtze River Water Environment, Tongji University, Shanghai, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai, China
| | - Pan Li
- State Key Laboratory of Pollution Control and Resources Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai, China; Ministry of Education Key Laboratory of Yangtze River Water Environment, Tongji University, Shanghai, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai, China
| | - Huaiyu Zhang
- Central and Southern China Institute of Municipal Engineering Design and Research, Hubei, China
| | - Wenhai Chu
- State Key Laboratory of Pollution Control and Resources Reuse, College of Environmental Science and Engineering, Tongji University, Shanghai, China; Ministry of Education Key Laboratory of Yangtze River Water Environment, Tongji University, Shanghai, China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai, China.
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Shih YJ, Chen JS, Chen YJ, Yang PY, Kuo YJ, Chen TH, Hsu BM. Impact of heavy precipitation events on pathogen occurrence in estuarine areas of the Puzi River in Taiwan. PLoS One 2021; 16:e0256266. [PMID: 34398929 PMCID: PMC8366992 DOI: 10.1371/journal.pone.0256266] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2020] [Accepted: 08/03/2021] [Indexed: 12/03/2022] Open
Abstract
Pathogen populations in estuarine areas are dynamic, as they are subject to multiple natural and anthropogenic challenges. Heavy rainfall events bring instability to the aquatic environment in estuaries, causing changes in pathogen populations and increased environmental sanitation and public health concerns. In this study, we investigated the effects of heavy precipitation on the occurrence of pathogens in the Puzi River estuary, which is adjacent to the largest inshore oyster farming area in Taiwan. Our results indicated that Vibrio parahaemolyticus and adenovirus were the most frequently detected pathogens in the area. There was a significant difference (Mann-Whitney U test, p < 0.01) in water quality parameters, including total coliform, Escherichia coli, water temperature, turbidity, salinity, and dissolved oxygen, between groups with and without V. parahaemolyticus. In addition, the detection rate was negatively correlated with the average daily rainfall (r2 > 0.8). There was no significant difference between water quality parameters and the presence/absence of adenovirus, but a positive correlation was observed between the average daily rainfall and the detection rate of adenovirus (r2 ≥ 0.75). We conclude that heavy precipitation changes estuarine water quality, causing variations in microbial composition, including pathogens. As extreme weather events become more frequent due to climate change, the potential impacts of severe weather events on estuarine environments require further investigation.
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Affiliation(s)
- Yi-Jia Shih
- Fujian Provincial Key Laboratory of Marine Fishery Resources and Eco-environment, Fisheries College, Jimei University, Xiamen, China
- Department of Earth and Environmental Sciences, National Chung Cheng University, Chiayi, Taiwan
| | - Jung-Sheng Chen
- Department of Earth and Environmental Sciences, National Chung Cheng University, Chiayi, Taiwan
- Department of Medical Research, E-Da Hospital, Kaohsiung, Taiwan
| | - Yi-Jen Chen
- Department of Chest Division, Internal Medicine, Ditmanson Medical Foundation Chiayi Christian Hospital, Chiayi, Taiwan
| | - Pei-Yu Yang
- Department of Laboratory, Show Chwan Memorial Hospital, Changhua, Taiwan
- Department of Kinesiology, Health and Leisure, Chienkuo Technology University, Changhua City, Taiwan
| | - Yi-Jie Kuo
- Department of Orthopedic Surgery, Wan Fang Hospital, Taipei Medical University, Taipei, Taiwan
| | - Tsung-Hsien Chen
- Department of Internal Medicine, Ditmanson Medical Foundation Chiayi Christian Hospital, Chiayi, Taiwan
| | - Bing-Mu Hsu
- Department of Earth and Environmental Sciences, National Chung Cheng University, Chiayi, Taiwan
- Center for Innovative on Aging Society (CIRAS), National Chung Cheng University, Chiayi, Taiwan
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7
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Rosiles-González G, Ávila-Torres G, Moreno-Valenzuela OA, Cháidez-Quiroz C, Hernández-Flores CI, Acosta-González G, Brown JK, Betancourt WQ, Gerba CP, Hernández-Zepeda C. Norovirus and human adenovirus occurrence and diversity in recreational water in a karst aquifer in the Yucatan Peninsula, Mexico. J Appl Microbiol 2019; 127:1255-1269. [PMID: 31309647 DOI: 10.1111/jam.14385] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2019] [Revised: 06/17/2019] [Accepted: 07/01/2019] [Indexed: 11/29/2022]
Abstract
AIMS To determine the seasonal occurrence and diversity of norovirus (NoV) and human adenovirus (HAdV) in groundwater from sinkholes, and brackish water used for recreational activities in the karst aquifer of the Yucatan Peninsula, Mexico. METHODS AND RESULTS Hollow fibre ultrafiltration was used to concentrate viruses and standard plaque assay methods were used to enumerate somatic and F+ specific coliphages as viral indicators. Real-time quantitative polymerase chain reaction assays were used to estimate the number of genome copies for NoV strains GI, and GII, and HAdVs. The predominant NoV genotypes and HAdV serotypes were identified by comparative sequence analysis. Somatic and male F+ specific coliphages were detected at concentrations up to 94 and 60 plaque-forming units per 100 ml respectively. The NoV genogroup I (GI) was associated with 50% of the sampled sites during the rainy season only, at concentrations ranging from 120 to 1600 genome copies per litre (GC l-1 ). The NoV genogroup II (GII) was detected in 30 and 40% of the sampled sites during the rainy and dry seasons, respectively, at concentrations ranging from 10 to 290 GC l-1 . During the rainy and dry seasons, HAdVs were detected in 20% of the sites, at concentrations ranging from 24 to 690 GC l-1 . Identification of viral types revealed the presence of NoV GI.2, GII.Pe, GII.P16 and GII.P17, and HAdV F serotypes 40 and 41. CONCLUSIONS These findings demonstrate that NoVs and HAdVs are prevalent as virus contaminants in the karst aquifer, representing potential health risks particularly during the rainy season, in one of the most important areas used for tourism in Mexico. SIGNIFICANCE AND IMPACT OF THE STUDY This is one of the few studies conducted in karst aquifers that provide a foundational baseline of the distribution, concentrations and diversity of NoVs and HadVs in these particular environments.
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Affiliation(s)
- G Rosiles-González
- Centro de Investigación Científica de Yucatán, A.C., Unidad de Ciencias del Agua, Cancún, Quintana Roo, México
| | - G Ávila-Torres
- Centro de Investigación Científica de Yucatán, A.C., Unidad de Ciencias del Agua, Cancún, Quintana Roo, México
| | - O A Moreno-Valenzuela
- Centro de Investigación Científica de Yucatán, A.C., Unidad de Bioquímica y Biología Molecular de Plantas, Mérida, Yucatán, México
| | - C Cháidez-Quiroz
- Centro de Investigación en Alimentación y Desarrollo A.C., Laboratorio Nacional para la Investigación en Inocuidad Alimentaria, Culiacán, Sinaloa, México
| | - C I Hernández-Flores
- Centro de Investigación Científica de Yucatán, A.C., Unidad de Ciencias del Agua, Cancún, Quintana Roo, México
| | - G Acosta-González
- Centro de Investigación Científica de Yucatán, A.C., Unidad de Ciencias del Agua, Cancún, Quintana Roo, México
| | - J K Brown
- School of Plant Sciences, The University of Arizona, Tucson, AZ, USA
| | - W Q Betancourt
- Water and Energy Sustainable Technology (WEST) Center, The University of Arizona, Tucson, AZ, USA
| | - C P Gerba
- Water and Energy Sustainable Technology (WEST) Center, The University of Arizona, Tucson, AZ, USA
| | - C Hernández-Zepeda
- Centro de Investigación Científica de Yucatán, A.C., Unidad de Ciencias del Agua, Cancún, Quintana Roo, México
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Pang X, Qiu Y, Gao T, Zurawell R, Neumann NF, Craik S, Lee BE. Prevalence, levels and seasonal variations of human enteric viruses in six major rivers in Alberta, Canada. WATER RESEARCH 2019; 153:349-356. [PMID: 30743085 DOI: 10.1016/j.watres.2019.01.034] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2018] [Revised: 12/21/2018] [Accepted: 01/12/2019] [Indexed: 06/09/2023]
Abstract
The prevalence and seasonal variation of 7 viruses in 6 major rivers in Alberta were assessed using a combination of qPCR, cell culture and integrated cell culture with qPCR (ICC-qPCR). Water samples were collected monthly from rivers at different sites upstream and downstream of major urban centers. Seven viruses including rotavirus, adenovirus, astrovirus, norovirus, sapovirus, JC virus and enterovirus, were detected in at least one of the water samples at each site using qPCR. Rotavirus was most common with concentration ranging from 2.3 to 4.5 log10 genomic equivalent (GE) copies/L. Norovirus, sapovirus, astrovirus, adenoviruses and JC virus peaked during the winter (November to March). Viruses were most prevalent at the Bow River sampling site downstream of the City of Calgary, followed by the North Saskatchewan River site downstream of the City of Edmonton and the Red Deer River site downstream of the City of Red Deer. The detection rates and quantity of viruses had significant difference in the sampling sites between upstream and downstream of major urban centers (p < 0.001). 14% of the samples tested positive using viral culture indicating the presence of infectious viruses in river. Sequencing analysis identified human rotavirus in 75% of the samples collected from downstream versus 37% of the samples collected from upstream sites (p < 0.02). Multivariate binary regression showed that human activity in watersheds is a significant determinant of viruses in Alberta's Rivers. The discharge from wastewater treatment plants may be the possible sources of viral contamination. Seasonal coincidence of acute viral gastroenteritis outbreaks and monthly peak occurrence of enteric viruses in river water implies potential impact of waterborne viruses on human health.
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Affiliation(s)
- Xiaoli Pang
- Department of Laboratory Medicine and Pathology, University of Alberta, 116st & 85 Ave, Edmonton, AB, T6G 2R3, Canada; Provincial Laboratory for Public Health, 8440-112st, Edmonton, AB, T6G 2J2, Canada.
| | - Yuanyuan Qiu
- Department of Laboratory Medicine and Pathology, University of Alberta, 116st & 85 Ave, Edmonton, AB, T6G 2R3, Canada
| | - Tiejun Gao
- Department of Laboratory Medicine and Pathology, University of Alberta, 116st & 85 Ave, Edmonton, AB, T6G 2R3, Canada
| | - Ron Zurawell
- Environmental Monitoring and Science Division, Alberta Environment and Parks, Edmonton, AB, T5J 5C6, Canada
| | - Norman F Neumann
- School of Public Health, University of Alberta, 1405-87 Ave, Edmonton, AB, T6G 1C9, Canada
| | - Stephen Craik
- EPCOR Water, 9469 Rossdale Rd NW, Edmonton, AB, T5K 2E9, Canada
| | - Bonita E Lee
- Department of Paediatrics, University of Alberta, 1405-87 Ave, Edmonton, AB, T6G 1C9, Canada
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9
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Gamazo P, Victoria M, Schijven JF, Alvareda E, Tort LFL, Ramos J, Burutaran L, Olivera M, Lizasoain A, Sapriza G, Castells M, Colina R. Evaluation of Bacterial Contamination as an Indicator of Viral Contamination in a Sedimentary Aquifer in Uruguay. FOOD AND ENVIRONMENTAL VIROLOGY 2018; 10:305-315. [PMID: 29564721 DOI: 10.1007/s12560-018-9341-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2017] [Accepted: 12/22/2017] [Indexed: 06/08/2023]
Abstract
In Uruguay, groundwater is frequently used for agricultural activities, as well as for human consumption in urban and rural areas. As in many countries worldwide, drinking water microbiological quality is evaluated only according to bacteriological standards and virological analyses are not mentioned in the legislation. In this work, the incidence of human viral (Rotavirus A, Norovirus GII, and human Adenovirus) and bacterial (total and thermotolerant coliform and Pseudomonas aeruginosa) contamination in groundwater in the Salto district, Uruguay, as well as the possible correlation between these groups of microorganisms, was studied. From a total of 134 groundwater samples, 42 (32.1%) were positive for Rotavirus, only 1 (0.7%) for both Rotavirus and Adenovirus, and 96 (72.6%) samples were positive for bacterial indicators. Results also show that Rotavirus presence was not associated with changes in chemical composition of the aquifer water. Bacteriological indicators were not adequate to predict the presence of viruses in individual groundwater samples (well scale), but a deeper spatial-temporal analysis showed that they are promising candidates to assess the viral contamination degree at aquifer scale, since from the number of wells with bacterial contamination the number of wells with viral contamination could be estimated.
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Affiliation(s)
- P Gamazo
- Departamento del Agua (Water Department), CENUR LN (North Littoral Regional University Center), Universidad de la República, Gral. Rivera 1350, Salto, CP: 50.000, Uruguay
| | - M Victoria
- Laboratorio de Virología Molecular, (Molecular Virology Laboratory), CENUR LN (North Littoral Regional University Center), Universidad de la República, Gral. Rivera 1350, Salto, CP: 50.000, Uruguay
| | - J F Schijven
- Department of Earth Sciences, Utrecht University, Budapestlaan 4, P.O. Box 80021, 3508 TA, Utrecht, The Netherlands
- Department of Statistics, Informatics and Modelling, National Institute of Public Health and the Environment (RIVM), P.O. Box 1, 3720 BA, Bilthoven, The Netherlands
| | - E Alvareda
- Departamento del Agua (Water Department), CENUR LN (North Littoral Regional University Center), Universidad de la República, Gral. Rivera 1350, Salto, CP: 50.000, Uruguay
| | - L F L Tort
- Laboratorio de Virología Molecular, (Molecular Virology Laboratory), CENUR LN (North Littoral Regional University Center), Universidad de la República, Gral. Rivera 1350, Salto, CP: 50.000, Uruguay
| | - J Ramos
- Departamento del Agua (Water Department), CENUR LN (North Littoral Regional University Center), Universidad de la República, Gral. Rivera 1350, Salto, CP: 50.000, Uruguay
| | - L Burutaran
- Laboratorio de Virología Molecular, (Molecular Virology Laboratory), CENUR LN (North Littoral Regional University Center), Universidad de la República, Gral. Rivera 1350, Salto, CP: 50.000, Uruguay
| | - M Olivera
- Departamento del Agua (Water Department), CENUR LN (North Littoral Regional University Center), Universidad de la República, Gral. Rivera 1350, Salto, CP: 50.000, Uruguay
| | - A Lizasoain
- Laboratorio de Virología Molecular, (Molecular Virology Laboratory), CENUR LN (North Littoral Regional University Center), Universidad de la República, Gral. Rivera 1350, Salto, CP: 50.000, Uruguay
| | - G Sapriza
- Departamento del Agua (Water Department), CENUR LN (North Littoral Regional University Center), Universidad de la República, Gral. Rivera 1350, Salto, CP: 50.000, Uruguay
| | - M Castells
- Laboratorio de Virología Molecular, (Molecular Virology Laboratory), CENUR LN (North Littoral Regional University Center), Universidad de la República, Gral. Rivera 1350, Salto, CP: 50.000, Uruguay
| | - R Colina
- Laboratorio de Virología Molecular, (Molecular Virology Laboratory), CENUR LN (North Littoral Regional University Center), Universidad de la República, Gral. Rivera 1350, Salto, CP: 50.000, Uruguay.
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10
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Tsai HC, Chou MY, Wu CC, Wan MT, Kuo YJ, Chen JS, Huang TY, Hsu BM. Seasonal Distribution and Genotyping of Antibiotic Resistant Strains of ListeriaInnocua Isolated from A River Basin Categorized by ERIC-PCR. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2018; 15:E1559. [PMID: 30041470 PMCID: PMC6068817 DOI: 10.3390/ijerph15071559] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/25/2018] [Revised: 07/18/2018] [Accepted: 07/20/2018] [Indexed: 11/17/2022]
Abstract
Listeria innocua retains many conserved homologous domains with Listeria monocytogenes, which is a food-borne and water-borne diarrhea-causing bacterium. Studies of antimicrobial resistance in L. innocua showed that this microbe is more prone to acquire resistance than other bacteria in the genus Listeria. However, little is known about the seasonal population distribution and antimicrobial resistance patterns of L. innocua in natural water environments. The aims of the study were: (1) to investigate the occurrence of L. innocua isolates in a subtropical watershed and reconstruct the population structure and (2) to analyze the antibacterial resistance patterns of the identified L. innocua isolates according to ERIC type. A total of 288 water samples was collected from the Puzi River basin (23°28' N, 120°13' E) between March 2014 and March 2015, and 36 L. innocua isolates were recovered from 15 positive water samples. With regard to seasonal variation, L. innocua was only detected in the spring and summer. Eighteen enterobacterial repetitive intergenic consensus (ERIC)-PCR types were identified, and two genogroups with four subgroups were reconstructed in a minimum spanning tree. Isolates from different sampling areas that were located near each other were genetically different. All L. innocua isolates (including 41.7% of the multidrug-resistant (MDR) isolates) were resistant to oxacillin and showed high minimum inhibitory concentrations of tetracycline. These findings demonstrate the seasonal variations and differing geographical distributions of L. innocua in this subtropical water environment, as well as the existence of strong population structures and MDR and antimicrobial resistance patterns. Phylogenetic analysis based on ERIC-type showed that the Cluster A isolates were resistant to more antibiotics, and two types, ERIC8 and ERIC15 were multidrug resistant. The more commonly detected types, such as ERIC1 and ERIC12, were also more likely to be resistant to two or more antibiotics. Close monitoring of drug resistance in environmental L. innocua is warranted due to its potential for transferring antimicrobial resistance determinants to pathogenic Listeria.
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Affiliation(s)
- Hsin-Chi Tsai
- Department of Psychiatry, School of Medicine, Tzu Chi University, Hualien 970, Taiwan.
- Department of Psychiatry, Tzu-Chi General Hospital, Hualien 970, Taiwan.
| | - Ming-Yuan Chou
- Department of Internal Medicine, Cheng Hsin General Hospital, Taipei 112, Taiwan.
| | - Cheng-Chun Wu
- Department of Orthopedic Surgery, Wan Fang Hospital, Taipei Medical University, Taipei 116, Taiwan.
| | - Min-Tao Wan
- Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan.
- EcoHealth Microbiology Laboratory, WanYu Co., Ltd., Chiayi 600, Taiwan.
| | - Yi-Jie Kuo
- Department of Orthopedic Surgery, Wan Fang Hospital, Taipei Medical University, Taipei 116, Taiwan.
| | - Jung-Sheng Chen
- Department of Earth and Environmental Sciences, National Chung Cheng University, Chiayi 621, Taiwan.
| | - Tung-Yi Huang
- Department of Earth and Environmental Sciences, National Chung Cheng University, Chiayi 621, Taiwan.
| | - Bing-Mu Hsu
- Department of Earth and Environmental Sciences, National Chung Cheng University, Chiayi 621, Taiwan.
- Center for Innovative on Aging Society (CIRAS), National Chung Cheng University, Chiayi 621, Taiwan.
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11
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Shih YJ, Tao CW, Tsai HC, Huang WC, Huang TY, Chen JS, Chiu YC, Hsu TK, Hsu BM. First detection of enteric adenoviruses genotype 41 in recreation spring areas of Taiwan. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017. [PMID: 28639027 DOI: 10.1007/s11356-017-9513-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/16/2023]
Abstract
Human adenoviruses (HAdVs) are DNA viruses found in recreational water, such as water parks and swimming pools. Human adenovirus 41 (HAdV-41) is the most common serotype detected and is a leading cause of acute diarrheal disease. The focus of this study is to determine the prevalence of HAdVs in hot springs. Of 57 samples collected from four different geological sites, 16 samples have shown evidence of HAdVs (28.1%). HAdV-41 and porcine adenovirus 5 (PAdV-5) were the two types isolated, with a greater frequency of HAdV-41, which in other settings has been associated with acute diarrhea. The highest occurrence was found in private hot tubs/Yuya (37.5%), followed by an outlet of hot springs (30.8%); public pools and foot pools shared the same detection rate of 21.4% (3/14). However, there was no evidence supporting a link between water quality indicators and HAdV detection rate. From a phylogenic analysis and BLAST against the NCBI database, it was concluded that HAdV-41 obtained from hot spring areas are closely related to global environmental genotypes.
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Affiliation(s)
- Yi-Jia Shih
- Department of Earth and Environmental Sciences, National Chung Cheng University, Chiayi, Taiwan, Republic of China
| | - Chi-Wei Tao
- Section of Respiratory Therapy, Cheng Hsin General Hospital, Taipei, Taiwan, Republic of China
| | - Hsin-Chi Tsai
- School of Medicine, Tzu-Chi University, Hualien, Taiwan, Republic of China
- Department of Psychiatry, Tzu-Chi General Hospital, Hualien, Taiwan, Republic of China
| | - Wen-Chien Huang
- Department of Medicine, Mackay Medicine College, Taipei, Taiwan, Republic of China
- Department of Thoracic Surgery, Mackay Memorial Hospital, Taipei, Taiwan, Republic of China
- Mackay Junior College of Medicine, Nursing, and Management, Taipei, Taiwan, Republic of China
| | - Tung-Yi Huang
- Department of Earth and Environmental Sciences, National Chung Cheng University, Chiayi, Taiwan, Republic of China
| | - Jung-Sheng Chen
- Graduate Institute of Life Sciences, National Defense Medical Center, Taipei, Taiwan, Republic of China
| | - Yi-Chou Chiu
- General Surgery, Surgical Department, Cheng Hsin General Hospital, Taipei, Taiwan, Republic of China
| | - Tsui-Kang Hsu
- Department of Ophthalmology, Cheng Hsin General Hospital, Taipei, Taiwan, Republic of China
| | - Bing-Mu Hsu
- Department of Earth and Environmental Sciences, National Chung Cheng University, Chiayi, Taiwan, Republic of China.
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12
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Pimenta AI, Guerreiro D, Madureira J, Margaça FMA, Cabo Verde S. Tracking Human Adenovirus Inactivation by Gamma Radiation under Different Environmental Conditions. Appl Environ Microbiol 2016; 82:5166-73. [PMID: 27316961 PMCID: PMC4988180 DOI: 10.1128/aem.01229-16] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2016] [Accepted: 06/09/2016] [Indexed: 02/04/2023] Open
Abstract
UNLABELLED Adenovirus is the most prevalent enteric virus in waters worldwide due to its environmental stability, which leads to public health concerns. Mitigation strategies are therefore required. The aim of this study was to assess the inactivation of human adenovirus type 5 (HAdV-5) by gamma radiation in aqueous environments. Various substrates with different organic loads, including domestic wastewater, were inoculated with HAdV-5 either individually or in a viral pool (with murine norovirus type 1 [MNV-1]) and were irradiated in a Cobalt-60 irradiator at several gamma radiation doses (0.9 to 10.8 kGy). The infectivity of viral particles, before and after irradiation, was tested by plaque assay using A549 cells. D10 values (dose required to inactivate 90% of a population or the dose of irradiation needed to produce a 1 log10 reduction in the population) were estimated for each substrate based on virus infectivity inactivation exponential kinetics. The capability of two detection methods, nested PCR and enzyme-linked immunosorbent assay (ELISA), to track inactivated viral particles was also assessed. After irradiation at 3.5 kGy, a reduction of the HAdV-5 titer of 4 log PFU/ml on substrates with lower organic loads was obtained, but in highly organic matrixes, the virus titer reduction was only 1 log PFU/ml. The D10 values of HAdV-5 in high organic substrates were significantly higher than in water suspensions. The obtained results point out some discrepancies between nested PCR, ELISA, and plaque assay on the assessments of HAdV-5 inactivation. These results suggest that the inactivation of HAdV-5 by gamma radiation, in aqueous environments, is significantly affected by substrate composition. This study highlights the virucidal potential of gamma radiation that may be used as a disinfection treatment for sustainable water supplies. IMPORTANCE Human adenovirus (HAdV) is the most prevalent of the enteric viruses in environmental waters worldwide. The purposes of this study are to provide new insights on the inactivation of enteric virus by gamma irradiation and to introduce new concepts and reinforce the benefits and utility of radiation technologies as disinfection processes. This may be an effective tool to guarantee the reduction of viral pathogens and to contribute to public health and sustainable water supplies.
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Affiliation(s)
- Andreia I Pimenta
- Centro de Ciências e Tecnologias Nucleares (C2TN), Instituto Superior Técnico, Universidade de Lisboa, Bobadela, Loures, Portugal
| | - Duarte Guerreiro
- Centro de Ciências e Tecnologias Nucleares (C2TN), Instituto Superior Técnico, Universidade de Lisboa, Bobadela, Loures, Portugal
| | - Joana Madureira
- Centro de Ciências e Tecnologias Nucleares (C2TN), Instituto Superior Técnico, Universidade de Lisboa, Bobadela, Loures, Portugal
| | - Fernanda M A Margaça
- Centro de Ciências e Tecnologias Nucleares (C2TN), Instituto Superior Técnico, Universidade de Lisboa, Bobadela, Loures, Portugal
| | - Sandra Cabo Verde
- Centro de Ciências e Tecnologias Nucleares (C2TN), Instituto Superior Técnico, Universidade de Lisboa, Bobadela, Loures, Portugal
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