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Leon A. A synthesis of the evidence regarding the efficacy of alternative field management practices in rice cultivation using life cycle assessment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 926:171693. [PMID: 38485015 DOI: 10.1016/j.scitotenv.2024.171693] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2023] [Revised: 02/17/2024] [Accepted: 03/11/2024] [Indexed: 03/26/2024]
Abstract
Field management practices are an important factor in mitigating climate change and increasing agricultural production. However, no study has synthesized the evidence on the efficacy of alternative field management practices and reviewed life cycle assessments that consider all emissions over the entire or part of the life cycle of rice production. Thus, 68 papers were reviewed and grouped into 13 field management categories. The management practices were evaluated in terms of yield, area-scaled greenhouse gas (GHG) emissions, and yield-scaled GHG emissions against base management practices. The yield increase of these field management practices was between -6 % and 12 %, with some exceptions. It was only nonpuddling that simultaneously increased the yield and reduced both the area-scaled GHG and yield-scaled GHG emissions with respect to the base category. Water management, including alternate wetting and drying or single and multiple drainage and no-tillage, performed well in reducing the average area-scaled GHG and yield-scaled GHG emissions, although the average yield was reduced slightly. For the remaining many management practices, the increase in area-scaled GHG emissions was larger than the change in yield, so the yield change had little impact on yield-scaled GHG emissions. The higher increase in area-scaled GHG emissions than the change in yield requires innovative and new approaches, such as implementing alternative management together with water management, of which the effect was observed in some of the papers reviewed in this study. Therefore, this study recommends selecting nonpuddling, water management or no-tillage as climate mitigation management options. The evaluation of field management will be more robust if more impact categories are considered, including missing aspects (i.e., soil fertility).
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Affiliation(s)
- Ai Leon
- Japan International Research Center for Agricultural Sciences, 1-1Ohwashi, Tsukuba, Ibaraki 305-8686, Japan.
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Bista D, Sapkota S, Acharya P, Acharya R, Ghimire R. Reducing energy and carbon footprint in semi-arid irrigated cropping systems through crop diversification. Heliyon 2024; 10:e27904. [PMID: 38524585 PMCID: PMC10958362 DOI: 10.1016/j.heliyon.2024.e27904] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 03/07/2024] [Accepted: 03/07/2024] [Indexed: 03/26/2024] Open
Abstract
Energy and carbon (C) footprints of agricultural production practices have garnered high attention due to rising energy costs and increasing global warming. However, the contribution of conservation and regenerative farming practices, including cover cropping, on energy and C footprints have not yet been documented for cropping systems in arid and semi-arid regions. This study evaluated the energy and C footprint of cover crop integrated silage maize (Zea mays L.) and sorghum (Sorghum bicolor L. Moench) production systems in the semi-arid region of the southwestern US. The treatments were mixtures of winter cover crops: i) grasses and legumes (GL), ii) grasses, brassicas, and legumes (GBL), iii) grasses and brassicas (GB), and iv) no cover crops (NCC) control for each crop production system. Results showed cover crops had 24.1-24.5% greater energy input than NCC. In silage maize rotation, energy output was 17-22% greater in GBL and GL than in NCC. In silage sorghum rotation, the energy output was 15-24% greater in all cover crops than in NCC. The resulting net energy was 16-21% greater in GBL and GL than in NCC under silage maize, while it was 18-24% greater in GBL and GB than in NCC under silage sorghum. In the silage maize system, the C-footprint per kg yield was not different among treatments, whereas in silage sorghum, it was 58% greater in GBL than in NCC. The benefit-to-cost ratio was greater than one for all treatments, but the additional revenue through C credit programs could make cover cropping a more feasible and beneficial approach, improving economic and environmental sustainability while producing silage crops. While the C footprint was crop rotation specific, cover cropping should be encouraged over crop-fallow systems to producers in semi-arid environments to reduce energy usage and increase C-credit benefits. Clear national and state policy on the C credit program will also enhance economic and environmental benefits by adopting cover cropping and other regenerative farming practices.
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Affiliation(s)
- Dabit Bista
- New Mexico State University, Department of Agricultural Economics and Agricultural Business, Las Cruces, NM, USA
| | - Sushil Sapkota
- New Mexico State University, Department of Agricultural Economics and Agricultural Business, Las Cruces, NM, USA
| | - Pramod Acharya
- New Mexico State University, Agricultural Science Center, Clovis, NM, USA
| | - Ram Acharya
- New Mexico State University, Department of Agricultural Economics and Agricultural Business, Las Cruces, NM, USA
| | - Rajan Ghimire
- New Mexico State University, Agricultural Science Center, Clovis, NM, USA
- New Mexico State University, Department of Plant and Environmental Sciences, Las Cruces, NM, USA
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Prelac M, Major N, Cvitan D, Anđelini D, Repajić M, Ćurko J, Kovačević TK, Goreta Ban S, Užila Z, Ban D, Palčić I. Valorization of Olive Leaf Polyphenols by Green Extraction and Selective Adsorption on Biochar Derived from Grapevine Pruning Residues. Antioxidants (Basel) 2023; 13:1. [PMID: 38275621 PMCID: PMC10812658 DOI: 10.3390/antiox13010001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Revised: 12/15/2023] [Accepted: 12/15/2023] [Indexed: 01/27/2024] Open
Abstract
Given today's increasingly intensive agriculture, one key problem area considers the valorization and reuse of wastes from food and agricultural production with minimal impact on the environment. Due to its physicochemical characteristics, biochar (BC) derived from grapevine pruning residue has shown considerable potential for use as an adsorbent. High-value phytochemicals found in abundance in the olive leaf (OL) can be employed in many different industrial sectors. The potential application of BC in the removal of specific polyphenolic components from OL extracts has been investigated in the present study. Water, as the most available and greenest of solvents, was investigated as to its use in the extraction of polyphenols, which was carried out by comparing maceration, ultrasound-assisted extraction, and microwave-assisted extraction, considering different temperatures and solid-to-liquid (s/l) ratios. The BC adsorption capacity of selected polyphenols was fitted with both the Langmuir and Freundlich isotherm models. The Freundlich model fitted better relative to OL polyphenols adsorption. Oleuropein was the most abundant compound identified in the extracts, obtaining the highest Kf value (20.4 (mg/g) × (L/g)n) and R2 coefficient (0.9715) in the adsorption on the biochar's surface. The optimum conditions in the dosage experiment suggest the use of 0.5 g of BC using 3 g/L extracts, with an exception for oleuropein and hydroxytyrosol, for which the highest biochar dose (2.5 g) performed better. Considering the compounds' concentrations and the BC dose, BC from grapevine pruning residues demonstrated a potential use in the uptake of specific polyphenols from olive leaves, making it a promising adsorbent for such applications.
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Affiliation(s)
- Melissa Prelac
- Institute of Agriculture and Tourism, Karla Huguesa 8, 52440 Poreč, Croatia; (M.P.); (D.C.); (D.A.); (T.K.K.); (S.G.B.); (Z.U.); (D.B.); (I.P.)
| | - Nikola Major
- Institute of Agriculture and Tourism, Karla Huguesa 8, 52440 Poreč, Croatia; (M.P.); (D.C.); (D.A.); (T.K.K.); (S.G.B.); (Z.U.); (D.B.); (I.P.)
| | - Danko Cvitan
- Institute of Agriculture and Tourism, Karla Huguesa 8, 52440 Poreč, Croatia; (M.P.); (D.C.); (D.A.); (T.K.K.); (S.G.B.); (Z.U.); (D.B.); (I.P.)
| | - Dominik Anđelini
- Institute of Agriculture and Tourism, Karla Huguesa 8, 52440 Poreč, Croatia; (M.P.); (D.C.); (D.A.); (T.K.K.); (S.G.B.); (Z.U.); (D.B.); (I.P.)
| | - Maja Repajić
- Department of Food Engineering, University of Zagreb, Faculty of Food Technology and Biotechnology, Pierottijeva 6, 10000 Zagreb, Croatia; (M.R.); (J.Ć.)
| | - Josip Ćurko
- Department of Food Engineering, University of Zagreb, Faculty of Food Technology and Biotechnology, Pierottijeva 6, 10000 Zagreb, Croatia; (M.R.); (J.Ć.)
| | - Tvrtko Karlo Kovačević
- Institute of Agriculture and Tourism, Karla Huguesa 8, 52440 Poreč, Croatia; (M.P.); (D.C.); (D.A.); (T.K.K.); (S.G.B.); (Z.U.); (D.B.); (I.P.)
| | - Smiljana Goreta Ban
- Institute of Agriculture and Tourism, Karla Huguesa 8, 52440 Poreč, Croatia; (M.P.); (D.C.); (D.A.); (T.K.K.); (S.G.B.); (Z.U.); (D.B.); (I.P.)
| | - Zoran Užila
- Institute of Agriculture and Tourism, Karla Huguesa 8, 52440 Poreč, Croatia; (M.P.); (D.C.); (D.A.); (T.K.K.); (S.G.B.); (Z.U.); (D.B.); (I.P.)
| | - Dean Ban
- Institute of Agriculture and Tourism, Karla Huguesa 8, 52440 Poreč, Croatia; (M.P.); (D.C.); (D.A.); (T.K.K.); (S.G.B.); (Z.U.); (D.B.); (I.P.)
| | - Igor Palčić
- Institute of Agriculture and Tourism, Karla Huguesa 8, 52440 Poreč, Croatia; (M.P.); (D.C.); (D.A.); (T.K.K.); (S.G.B.); (Z.U.); (D.B.); (I.P.)
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Agache I, Laculiceanu A, Spanu D, Grigorescu D. The Concept of One Health for Allergic Diseases and Asthma. ALLERGY, ASTHMA & IMMUNOLOGY RESEARCH 2023; 15:290-302. [PMID: 37188486 DOI: 10.4168/aair.2023.15.3.290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Revised: 04/05/2023] [Accepted: 04/05/2023] [Indexed: 05/17/2023]
Abstract
The worldwide prevalence of allergic disease is rising as a result of complex gene-environment interactions that shape the immune system and host response. Climate change and loss of biodiversity are existential threats to humans, animals, plants, and ecosystems. While there is significant progress in the development of targeted therapeutic options to treat allergies and asthma, these approaches are inadequate to meet the challenges faced by climate change. The exposomic approach is needed with the recognition of the bidirectional effect between human beings and the environment. All stakeholders need to work together toward mitigating the effects of climate change and promoting a One Health concept in order to decrease the burden of asthma and allergy and to improve immune health. Healthcare professionals should strive to incorporate One Health counseling, environmental health precepts, and advocacy into their practice.
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Affiliation(s)
- Ioana Agache
- Faculty of Medicine, Transylvania University, Brasov, Romania.
| | | | - Daniela Spanu
- Faculty of Medicine, Transylvania University, Brasov, Romania
| | - Dan Grigorescu
- Faculty of Medicine, Transylvania University, Brasov, Romania
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Korasaki V, Carvalho SN, Correa CMA, Giestas PHC, Vaz‐de‐Mello F, Louzada J. Response of the dung beetle community to different climatic zones: Does the land use system matter? AUSTRAL ECOL 2022. [DOI: 10.1111/aec.13267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Vanesca Korasaki
- Departamento de Ciências Agrárias e Biológicas Universidade do Estado de Minas Gerais Frutal Brazil
| | - Sabrina N. Carvalho
- Departamento de Ecologia e Conservação Universidade Federal de Lavras Lavras Brazil
| | - César M. A. Correa
- Departamento de Ecologia e Conservação Universidade Federal de Lavras Lavras Brazil
- Universidade Estadual de Mato Grosso do Sul Aquidauana Brazil
| | - Pedro H. C. Giestas
- Centro de Ciências Exatas, Naturais e da Saúde, Universidade Federal do Espírito Santo Vitória Brazil
| | - Fernando Vaz‐de‐Mello
- Departamento de Biologia e Zoologia, Instituto de Biociências Universidade Federal de Mato Grosso Cuiabá Brazil
| | - Julio Louzada
- Departamento de Ecologia e Conservação Universidade Federal de Lavras Lavras Brazil
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6
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Konkol D, Popiela E, Skrzypczak D, Izydorczyk G, Mikula K, Moustakas K, Opaliński S, Korczyński M, Witek-Krowiak A, Chojnacka K. Recent innovations in various methods of harmful gases conversion and its mechanism in poultry farms. ENVIRONMENTAL RESEARCH 2022; 214:113825. [PMID: 35835164 DOI: 10.1016/j.envres.2022.113825] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 06/15/2022] [Accepted: 07/02/2022] [Indexed: 06/15/2023]
Abstract
Poultry breeding takes place in intensive, high-production systems characterized by high animal density, which is a source of harmful emission of odorous volatile organic compounds (VOCs), ammonia (NH3), hydrogen sulfide (H2S) and greenhouse gases, which in turn sustain animal welfare. This study identified and examined the characteristics of chemical compounds emitted in intensive poultry farming (laying hens, broilers) and their toxicity, which led to recommending methods of deodorization. Emphasis was placed on the law relative to air purification in poultry farms. Various methods of air treatment in poultry farms have been described: the modification of animal diet to improve nutrient retention and decrease the amount of their excrement; chemical oxidation technologies (ozonation, photocatalysis, Fenton reaction); various types/brands of biofilters, bioscrubbers and membrane reactors. Numerous studies show that biofilters can reduce ammonia emissions by 51%, hydrogen sulfide by 80%, odors by 67%, while scrubbers brings down ammonia emissions by 77% and odors by 42%, and the application of UV light lowers ammonia emissions by 28%, hydrogen sulfide by 55%, odors by 69% and VOCs by 52%. The paper presents both the solutions currently used in poultry farming and those which are currently in the research and development phase and, as innovative solutions, could be implemented in the near future.
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Affiliation(s)
- Damian Konkol
- Department of Animal Nutrition and Feed Management, Faculty of Biology and Animal Science, Wrocław University of Environmental and Life Sciences, Chełmońskiego 38C, 51-630, Wrocław, Poland
| | - Ewa Popiela
- Department of Environment Hygiene and Animal Welfare, Faculty of Biology and Animal Science, Wrocław University of Environmental and Life Sciences, Chełmońskiego 38C, 51-630, Wrocław, Poland
| | - Dawid Skrzypczak
- Department of Advanced Material Technologies, Faculty of Chemistry, Wroclaw University of Science and Technology, Wroclaw, Poland.
| | - Grzegorz Izydorczyk
- Department of Advanced Material Technologies, Faculty of Chemistry, Wroclaw University of Science and Technology, Wroclaw, Poland
| | - Katarzyna Mikula
- Department of Advanced Material Technologies, Faculty of Chemistry, Wroclaw University of Science and Technology, Wroclaw, Poland
| | - Konstantinos Moustakas
- School of Chemical Engineering, National Technical University of Athens, 9 Iroon Polytechniou Str., Zographou Campus, GR-15780, Athens, Greece
| | - Sebastian Opaliński
- Department of Environment Hygiene and Animal Welfare, Faculty of Biology and Animal Science, Wrocław University of Environmental and Life Sciences, Chełmońskiego 38C, 51-630, Wrocław, Poland
| | - Mariusz Korczyński
- Department of Animal Nutrition and Feed Management, Faculty of Biology and Animal Science, Wrocław University of Environmental and Life Sciences, Chełmońskiego 38C, 51-630, Wrocław, Poland
| | - Anna Witek-Krowiak
- Department of Advanced Material Technologies, Faculty of Chemistry, Wroclaw University of Science and Technology, Wroclaw, Poland
| | - Katarzyna Chojnacka
- Department of Advanced Material Technologies, Faculty of Chemistry, Wroclaw University of Science and Technology, Wroclaw, Poland
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Synthesis of Iron, Zinc, and Manganese Nanofertilizers, Using Andean Blueberry Extract, and Their Effect in the Growth of Cabbage and Lupin Plants. NANOMATERIALS 2022; 12:nano12111921. [PMID: 35683776 PMCID: PMC9182584 DOI: 10.3390/nano12111921] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Revised: 05/26/2022] [Accepted: 05/27/2022] [Indexed: 11/16/2022]
Abstract
The predominant aim of the current study was to synthesize the nanofertilizer nanoparticles ZnO_MnO-NPs and FeO_ZnO-NPs using Andean blueberry extract and determine the effect of NPs in the growth promotion of cabbage (Brassica oleracea var. capitata) and Andean lupin (Lupinus mutabilis sweet) crops. The nanoparticles were analyzed by visible spectrophotometry, size distribution (DLS), scanning electron microscopy (SEM), and transmission electron microscopy (TEM). Solutions of nanoparticle concentrations were applied to cabbage, with solutions of 270 and 540 ppm of ZnO_MnO-NPs and 270 and 540 ppm of FeO_ZnO-NPs applied to Andean lupin. Zinc was used in both plants to take advantage of its beneficial properties for plant growth. Foliar NPs sprays were applied at the phenological stage of vegetative growth of the cabbage or Andean lupin plants grown under greenhouse conditions. The diameter of the NPs was 9.5 nm for ZnO, 7.8 nm for FeO, and 10.5 nm for MnO, which facilitate the adsorption of NPs by the stomata of plants. In Andean lupin, treatment with 270 ppm of iron and zinc indicated increases of 6% in height, 19% in root size, 3.5% in chlorophyll content index, and 300% in leaf area, while treatment with 540 ppm of iron and zinc yielded no apparent increases in any variable. In cabbage, the ZnO_MnO-NPs indicate, at a concentration of 270 ppm, increases of 10.3% in root size, 55.1% in dry biomass, 7.1% in chlorophyll content, and 25.6% in leaf area. Cabbage plants treated at a concentration of 540 ppm produced increases of 1.3% in root size and 1.8% in chlorophyll content, compared to the control, which was sprayed with distilled water. Therefore, the spray application of nanofertilizers at 270 ppm indicated an important improvement in both plants’ growth.
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Yu D, Chen Y. The knowledge dissemination trajectory research of the carbon footprint domain: a main path analysis. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:34119-34136. [PMID: 35034300 DOI: 10.1007/s11356-021-18026-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Accepted: 12/06/2021] [Indexed: 06/14/2023]
Abstract
The global warming caused by greenhouse gas emissions has received widespread attention from all around the world. In this regard, how to calculate the carbon footprint (CF) scientifically and accurately produced by human activities to achieve emission reduction goals has been widely discussed by scholars. In recent years, related research on this issue has increased, leading to a significant expand in the number of publications. It is necessary to excavate and summarize the current development status and possible future trends of this field based on quantitative methods. To achieve this goal, this paper develops a main path analysis (MPA) of the entire field and three research sub-topics (agriculture, energy fuels, and business economic) based on the 4973 papers extracted from Web of Science (WoS) database. The results show that the CF domain mainly focuses on optimizing the CF calculation methods from a theoretical perspective to improve the accuracy of estimation. Furthermore, scholars engaged in the agricultural research mainly focus on adjusting the life cycle assessment (LCA) model, which has advantage on microlevel CF accounting, according to actual needs to achieve more accurate predictions, while researchers who pay attention to the topic of business economic are committed to improving the input-output model, which is suitable for meso and macro analysis, to enhance accounting accuracy. In general, this article is beneficial for presenting the intellectual structure and knowledge diffusion trajectories of the CF domain from horizontal and vertical perspectives.
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Affiliation(s)
- Dejian Yu
- Business School, Nanjing Audit University, Nanjing, 211815, Jiangsu, China
| | - Yitong Chen
- School of Information Management, Nanjing University, Nanjing, 210023, Jiangsu, China.
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9
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Demirtas M. Evaluation of energy use and carbon dioxide emissions from the consumption of fossil fuels and agricultural chemicals for paste tomato cultivation in the Bursa region of Turkey. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:27132-27146. [PMID: 33502709 DOI: 10.1007/s11356-021-12593-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2020] [Accepted: 01/18/2021] [Indexed: 06/12/2023]
Abstract
This study was aimed to determine the fossil fuel consumption, energy use, and carbon dioxide (CO2) emissions in per unit production area (ha) considering the petroleum products (PP) directly used and the chemical fertilizers and pesticides for the cultivation of paste tomatoes in open-field conditions in Bursa region of Turkey. The primary data of the study consisted of data collected by making face-to-face surveys with the producers of paste tomatoes in the Bursa region. The direct energy inputs and CO2 emissions related to diesel fuel and lubricant oil consumptions of engines of agricultural tractors for cultivation operations and the indirect energy inputs and CO2 emissions related to the manufacturing of chemical fertilizers and plant growth regulators used for plant nutrition and pesticides used for plant protection were determined for paste tomato cultivation. A total of 288.6 L diesel fuel and 0.067 L lubrication oil are consumed per hectare when using tools and machinery in paste tomato production. A total of 408 kg of chemical fertilizers and 15.5 kg of pesticides are used per hectare in paste tomato production in the Bursa region of Turkey. A total of 2343.45 MJ/ha and 2700.5 MJ/ha indirect energy is used in the application of chemical fertilizers and pesticides, respectively. A total of 792.43 kg and 0.189 kg CO2 is released as a result of diesel fuel and lubricant oil consumptions. For the production of one kilogram of paste tomato, 2.68 grams (g) diesel fuel and lubricating oil, 175.02 kilojoules (kJ) of energy is consumed, and 15.88 g CO2 is released in the Bursa region of Turkey.
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Affiliation(s)
- Muhammet Demirtas
- General Directorate of Agricultural Research and Policies, Universities district, Dumlupınar avenue, Eskisehir road 10. km, Cankaya, 06800, Ankara, Turkey.
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Gervais O, Barria A, Papadopoulou A, Gratacap RL, Hillestad B, Tinch AE, Martin SAM, Robledo D, Houston RD. Exploring genetic resistance to infectious salmon anaemia virus in Atlantic salmon by genome-wide association and RNA sequencing. BMC Genomics 2021; 22:345. [PMID: 33985436 PMCID: PMC8117317 DOI: 10.1186/s12864-021-07671-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 04/30/2021] [Indexed: 01/16/2023] Open
Abstract
Background Infectious Salmonid Anaemia Virus (ISAV) causes a notifiable disease that poses a large threat for Atlantic salmon (Salmo salar) aquaculture worldwide. There is no fully effective treatment or vaccine, and therefore selective breeding to increase resistance to ISAV is a promising avenue for disease prevention. Genomic selection and potentially genome editing can be applied to enhance host resistance, and these approaches benefit from improved knowledge of the genetic and functional basis of the target trait. The aim of this study was to characterise the genetic architecture of resistance to ISAV in a commercial Atlantic salmon population and study its underlying functional genomic basis using RNA Sequencing. Results A total of 2833 Atlantic salmon parr belonging to 194 families were exposed to ISAV in a cohabitation challenge in which cumulative mortality reached 63% over 55 days. A total of 1353 animals were genotyped using a 55 K SNP array, and the estimate of heritability for the trait of binary survival was 0.13–0.33 (pedigree-genomic). A genome-wide association analysis confirmed that resistance to ISAV was a polygenic trait, albeit a genomic region in chromosome Ssa13 was significantly associated with resistance and explained 3% of the genetic variance. RNA sequencing of the heart of 16 infected (7 and 14 days post infection) and 8 control fish highlighted 4927 and 2437 differentially expressed genes at 7 and 14 days post infection respectively. The complement and coagulation pathway was down-regulated in infected fish, while several metabolic pathways were up-regulated. The interferon pathway showed little evidence of up-regulation at 7 days post infection but was mildly activated at 14 days, suggesting a potential crosstalk between host and virus. Comparison of the transcriptomic response of fish with high and low breeding values for resistance highlighted TRIM25 as being up-regulated in resistant fish. Conclusions ISAV resistance shows moderate heritability with a polygenic architecture, but a significant QTL was detected on chromosome 13. A mild up-regulation of the interferon pathway characterises the response to the virus in heart samples from this population of Atlantic salmon, and candidate genes showing differential expression between samples with high and low breeding values for resistance were identified. Supplementary Information The online version contains supplementary material available at 10.1186/s12864-021-07671-6.
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Affiliation(s)
- O Gervais
- The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, UK
| | - A Barria
- The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, UK
| | - A Papadopoulou
- The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, UK
| | - R L Gratacap
- The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, UK
| | - B Hillestad
- Benchmark Genetics Norway, Sandviksboder 3A, N-5035, Bergen, AS, Norway
| | - A E Tinch
- Benchmark Genetics Ltd, Benchmark House, 8 Smithy Wood Drive, Sheffield, S35 1QN, UK
| | - S A M Martin
- School of Biological Sciences, University of Aberdeen, Aberdeen, UK
| | - D Robledo
- The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, UK.
| | - R D Houston
- The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Edinburgh, UK.
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11
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Binns CW, Lee MK, Maycock B, Torheim LE, Nanishi K, Duong DTT. Climate Change, Food Supply, and Dietary Guidelines. Annu Rev Public Health 2021; 42:233-255. [PMID: 33497266 DOI: 10.1146/annurev-publhealth-012420-105044] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Food production is affected by climate change, and, in turn, food production is responsible for 20-30% of greenhouse gases. The food system must increase output as the population increases and must meet nutrition and health needs while simultaneously assisting in achieving the Sustainable Development Goals. Good nutrition is important for combatting infection, reducing child mortality, and controlling obesity and chronic disease throughout the life course. Dietary guidelines provide advice for a healthy diet, and the main principles are now well established and compatible with sustainable development. Climate change will have a significant effect on food supply; however, with political commitment and substantial investment, projected improvements will be sufficient to provide food for the healthy diets needed to achieve the Sustainable Development Goals. Some changes will need to be made to food production, nutrient content will need monitoring, and more equitable distribution is required to meet the dietary guidelines. Increased breastfeeding rates will improve infant and adult health while helping to reduce greenhouse gases.
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Affiliation(s)
- Colin W Binns
- School of Public Health, Curtin University, Perth, Western Australia 6845, Australia;
| | - Mi Kyung Lee
- College of Science, Health, Engineering and Education, Murdoch University, Murdoch, Western Australia 6150, Australia;
| | - Bruce Maycock
- College of Medicine and Health, University of Exeter, Exeter EX1 2LU, United Kingdom.,Asia-Pacific Academic Consortium of Public Health (APACPH), APACPH KL Secretariat Office, Department of Social and Preventive Medicine, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia;
| | - Liv Elin Torheim
- Faculty of Health Sciences, Department of Nursing and Health Promotion, Oslo Metropolitan University, NO-0130 Oslo, Norway,
| | - Keiko Nanishi
- Office of International Academic Affairs, Graduate School of Medicine, The University of Tokyo, Bunkyo-Ku, Tokyo 113-0033, Japan;
| | - Doan Thi Thuy Duong
- Faculty of Social Sciences, Behavior and Health Education, Hanoi University of Public Health, Bac Tu Liem District, Hanoi 100000, Vietnam;
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Fiorella KJ, Okronipa H, Baker K, Heilpern S. Contemporary aquaculture: implications for human nutrition. Curr Opin Biotechnol 2021; 70:83-90. [PMID: 33445136 DOI: 10.1016/j.copbio.2020.11.014] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Revised: 11/11/2020] [Accepted: 11/30/2020] [Indexed: 01/09/2023]
Abstract
Aquaculture is increasing the global supply of foods, and holds tremendous potential to address malnutrition and diet-related diseases. The species selected and feeds used affects the nutrients available from aquaculture. Progress in the development of novel and sustainable aquaculture feeds to reduce reliance on wild fisheries, feed fortification to increase nutrient content, and expansion of the diversity of aquatic species produced are key areas for continued research and development. Ultimately, the degree to which aquaculture will contribute to nutrition depends largely on who can access the fish produced, which will be shaped by production technology as well as trade and price dynamics. Finally, the contribution of aquaculture expansion to improving nutrition will be bounded by aquaculture's environmental sustainability.
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Affiliation(s)
- Kathryn J Fiorella
- Master of Public Health Program & Department of Population Medicine and Diagnostic Sciences, Cornell University, United States.
| | - Harriet Okronipa
- Master of Public Health Program & Department of Population Medicine and Diagnostic Sciences, Cornell University, United States
| | - Katherine Baker
- Division of Nutritional Sciences, Cornell University, United States
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