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Duncan D, Garner R, Zrantchev I, Ard T, Newman B, Saslow A, Wanserski E, Toga AW. Using Virtual Reality to Improve Performance and User Experience in Manual Correction of MRI Segmentation Errors by Non-experts. J Digit Imaging 2020; 32:97-104. [PMID: 30030766 DOI: 10.1007/s10278-018-0108-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
Segmentation of MRI scans is a critical part of the workflow process before we can further analyze neuroimaging data. Although there are several automatic tools for segmentation, no segmentation software is perfectly accurate, and manual correction by visually inspecting the segmentation errors is required. The process of correcting these errors is tedious and time-consuming, so we present a novel method of performing this task in a head-mounted virtual reality interactive system with a new software, Virtual Brain Segmenter (VBS). We provide the results of user testing on 30 volunteers to show the benefits of our tool as a more efficient, intuitive, and engaging alternative compared with the current method of correcting segmentation errors.
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Affiliation(s)
- Dominique Duncan
- Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Ave., Los Angeles, CA, 90033, USA.
| | - Rachael Garner
- Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Ave., Los Angeles, CA, 90033, USA
| | - Ivan Zrantchev
- Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Ave., Los Angeles, CA, 90033, USA
| | - Tyler Ard
- Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Ave., Los Angeles, CA, 90033, USA
| | - Bradley Newman
- RareFaction Interactive, 1725 Camino Palmero Street, 410, Los Angeles, CA, 90046, USA
| | - Adam Saslow
- RareFaction Interactive, 1725 Camino Palmero Street, 410, Los Angeles, CA, 90046, USA
| | - Emily Wanserski
- RareFaction Interactive, 1725 Camino Palmero Street, 410, Los Angeles, CA, 90046, USA
| | - Arthur W Toga
- Laboratory of Neuro Imaging, USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, 2025 Zonal Ave., Los Angeles, CA, 90033, USA
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Keshavan A, Poline JB. From the Wet Lab to the Web Lab: A Paradigm Shift in Brain Imaging Research. Front Neuroinform 2019; 13:3. [PMID: 30881299 PMCID: PMC6405692 DOI: 10.3389/fninf.2019.00003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2018] [Accepted: 01/22/2019] [Indexed: 01/08/2023] Open
Abstract
Web technology has transformed our lives, and has led to a paradigm shift in the computational sciences. As the neuroimaging informatics research community amasses large datasets to answer complex neuroscience questions, we find that the web is the best medium to facilitate novel insights by way of improved collaboration and communication. Here, we review the landscape of web technologies used in neuroimaging research, and discuss future applications, areas for improvement, and the limitations of using web technology in research. Fully incorporating web technology in our research lifecycle requires not only technical skill, but a widespread culture change; a shift from the small, focused "wet lab" to a multidisciplinary and largely collaborative "web lab."
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Affiliation(s)
- Anisha Keshavan
- Department of Speech and Hearing, Institute for Neuroengineering, eScience Institute, University of Washington, Seattle, WA, United States
| | - Jean-Baptiste Poline
- Faculty of Medicine, McConnell Brain Imaging Centre, Ludmer Centre for Neuroinformatics and Mental Health, Montreal Neurological Institute and Hospital, McGill University, Montreal, QC, Canada
- Henry H. Wheeler Jr. Brain Imaging Center, Helen Wills Neuroscience Institute, University of California, Berkeley, Berkeley, CA, United States
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