Introduction to deep learning: minimum essence required to launch a research

Exploring the deep learning of artificial intelligence in nursing: a concept analysis with Walker and Avant's approach

BACKGROUND

In recent years, increased attention has been given to using deep learning (DL) of artificial intelligence (AI) in healthcare to address nursing challenges. The adoption of new technologies in nursing needs to be improved, and AI in nursing is still in its early stages. However, the current literature needs more clarity, which affects clinical practice, research, and theory development. This study aimed to clarify the meaning of deep learning and identify the defining attributes of artificial intelligence within nursing.

METHODS

We conducted a concept analysis of the deep learning of AI in nursing care using Walker and Avant's 8-step approach. Our search strategy employed Boolean techniques and MeSH terms across databases, including BMC, CINAHL, ClinicalKey for Nursing, Embase, Ovid, Scopus, SpringerLink and Spinger Nature, ProQuest, PubMed, and Web of Science. By focusing on relevant keywords in titles and abstracts from articles published between 2018 and 2024, we initially found 571 sources.

RESULTS

Thirty-seven articles that met the inclusion criteria were analyzed in this study. The attributes of evidence included four themes: focus and immersion, coding and understanding, arranging layers and algorithms, and implementing within the process of use cases to modify recommendations. Antecedents, unclear systems and communication, insufficient data management knowledge and support, and compound challenges can lead to suffering and risky caregiving tasks. Applying deep learning techniques enables nurses to simulate scenarios, predict outcomes, and plan care more precisely. Embracing deep learning equipment allows nurses to make better decisions. It empowers them with enhanced knowledge while ensuring adequate support and resources essential for caregiver and patient well-being. Access to necessary equipment is vital for high-quality home healthcare.

CONCLUSION

This study provides a clearer understanding of the use of deep learning in nursing and its implications for nursing practice. Future research should focus on exploring the impact of deep learning on healthcare operations management through quantitative and qualitative studies. Additionally, developing a framework to guide the integration of deep learning into nursing practice is recommended to facilitate its adoption and implementation.

Artificial Neural Network Prediction of Mortality in Cancer Patients Presenting for Radiation Therapy at a Multisite Institution

INTRODUCTION

For many decades, the management of cancer has utilized radiation therapy, which continues to evolve with technology to improve patient outcomes. However, despite the standardization of treatment plans and the establishment of best clinical practices based on prospective, randomized trials and adherence to National Comprehensive Cancer Network (NCCN) guidelines, the outcomes from radiation therapy are highly variable and dependent on a number of factors, including patient demographics, tumor characteristics/histology, and treatment parameters. In this study, we attempt to use available patient data and treatment parameters at the time of radiation therapy to predict future outcomes using artificial intelligence (AI).

METHODS

Six thousand five hundred ninety-five cases of patients who completed radiation treatment were selected retrospectively and used to train artificial neural networks (ANNs) and baseline models (i.e., logistic regression, random forest, support vector machines [SVMs], gradient boosting [XGBoost]) for binary classification of mortality at multiple time points ranging from six months to five years post-treatment. A hyperparameter grid search was used to identify the optimal network architecture for each time point, using sensitivity as the primary outcome metric.

RESULTS

The median age was 75 years (range: 2-102 years). There were 63.8% females and 36.1% males. The results indicate that ANNs were able to successfully perform binary mortality prediction with an accuracy greater than random chance and greater sensitivity than baseline models used. The best-performing algorithm was the ANN, which achieved a sensitivity of 83.00% ± 4.89% for five-year mortality.

CONCLUSION

The neural network was able to achieve higher sensitivity than Logistic Regression, SVM Random Forest, and XGBoost across all output target variables, demonstrating the utility of a neural network model for mortality prediction on the provided dataset.

Absolute ground truth-based validation of computer-aided nodule detection and volumetry in low-dose CT imaging

PURPOSE

To validate the performance of computer-aided detection (CAD) and volumetry software using an anthropomorphic phantom with a ground truth (GT) set of 3D-printed nodules.

METHODS

The Kyoto Kaguku Lungman phantom, containing 3D-printed solid nodules including six diameters (4 to 9 mm) and three morphologies (smooth, lobulated, spiculated), was scanned at varying CTDIvol levels (6.04, 1.54 and 0.20 mGy). Combinations of reconstruction algorithms (iterative and deep learning image reconstruction) and kernels (soft and hard) were applied. Detection, volumetry and density results recorded by a commercially available AI-based algorithm (AVIEW LCS + ) were compared to the absolute GT, which was determined through µCT scanning at 50 µm resolution. The associations between image acquisition parameters or nodule characteristics and accuracy of nodule detection and characterization were analyzed with chi square tests and multiple linear regression.

RESULTS

High levels of detection sensitivity and precision (minimal 83 % and 91 % respectively) were observed across all acquisitions. Neither reconstruction algorithm nor radiation dose showed significant associations with detection. Nodule diameter however showed a highly significant association with detection (p < 0.0001). Volumetric measurements for nodules > 6 mm were accurate within 10 % absolute range from volumeGT, regardless of dose and reconstruction. Nodule diameter and morphology are major determinants of volumetric accuracy (p < 0.001). Density assignment was not significantly influenced by any parameters.

CONCLUSIONS

Our study confirms the software's accurate performance in nodule volumetry, detection and density characterization with robustness for variations in CT imaging protocols. This study suggests the incorporation of similar phantom setups in quality assurance of CAD tools.

From big data to big insights: statistical and bioinformatic approaches for exploring the lipidome

The goal of lipidomic studies is to provide a broad characterization of cellular lipids present and changing in a sample of interest. Recent lipidomic research has significantly contributed to revealing the multifaceted roles that lipids play in fundamental cellular processes, including signaling, energy storage, and structural support. Furthermore, these findings have shed light on how lipids dynamically respond to various perturbations. Continued advancement in analytical techniques has also led to improved abilities to detect and identify novel lipid species, resulting in increasingly large datasets. Statistical analysis of these datasets can be challenging not only because of their vast size, but also because of the highly correlated data structure that exists due to many lipids belonging to the same metabolic or regulatory pathways. Interpretation of these lipidomic datasets is also hindered by a lack of current biological knowledge for the individual lipids. These limitations can therefore make lipidomic data analysis a daunting task. To address these difficulties and shed light on opportunities and also weaknesses in current tools, we have assembled this review. Here, we illustrate common statistical approaches for finding patterns in lipidomic datasets, including univariate hypothesis testing, unsupervised clustering, supervised classification modeling, and deep learning approaches. We then describe various bioinformatic tools often used to biologically contextualize results of interest. Overall, this review provides a framework for guiding lipidomic data analysis to promote a greater assessment of lipidomic results, while understanding potential advantages and weaknesses along the way.

Denoising approach with deep learning-based reconstruction for neuromelanin-sensitive MRI: image quality and diagnostic performance

PURPOSE

Neuromelanin-sensitive MRI (NM-MRI) has proven useful for diagnosing Parkinson's disease (PD) by showing reduced signals in the substantia nigra (SN) and locus coeruleus (LC), but requires a long scan time. The aim of this study was to assess the image quality and diagnostic performance of NM-MRI with a shortened scan time using a denoising approach with deep learning-based reconstruction (dDLR).

MATERIALS AND METHODS

We enrolled 22 healthy volunteers, 22 non-PD patients and 22 patients with PD who underwent NM-MRI, and performed manual ROI-based analysis. Signal-to-noise ratio (SNR) and contrast-to-noise ratio (CNR) in ten healthy volunteers were compared among images with a number of excitations (NEX) of 1 (NEX1), NEX1 images with dDLR (NEX1 + dDLR) and 5-NEX images (NEX5). Acquisition times for NEX1 and NEX5 were 3 min 12 s and 15 min 58 s, respectively. Diagnostic performances using the contrast ratio (CR) of the SN (CR_SN) and LC (CR_LC) and those by visual assessment for differentiating PD from non-PD were also compared between NEX1 and NEX1 + dDLR.

RESULTS

Image quality analyses revealed that SNRs and CNRs of the SN and LC in NEX1 + dDLR were significantly higher than in NEX1, and comparable to those in NEX5. In diagnostic performance analysis, areas under the receiver operating characteristic curve (AUC) using CR_SN and CR_LC of NEX1 + dDLR were 0.87 and 0.75, respectively, which had no significant difference with those of NEX1. Visual assessment showed improvement of diagnostic performance by applying dDLR.

CONCLUSION

Image quality for NEX1 + dDLR was comparable to that of NEX5. dDLR has the potential to reduce scan time of NM-MRI without degrading image quality. Both 1-NEX NM-MRI with and without dDLR showed high AUCs for diagnosing PD by CR. The results of visual assessment suggest advantages of dDLR. Further tuning of dDLR would be expected to provide clinical merits in diagnosing PD.

Applications, functions, and accuracy of artificial intelligence in restorative dentistry: A literature review

OBJECTIVE

The applications of artificial intelligence (AI) are increasing in restorative dentistry; however, the AI performance is unclear for dental professionals. The purpose of this narrative review was to evaluate the applications, functions, and accuracy of AI in diverse aspects of restorative dentistry including caries detection, tooth preparation margin detection, tooth restoration design, metal structure casting, dental restoration/implant detection, removable partial denture design, and tooth shade determination.

OVERVIEW

An electronic search was performed on Medline/PubMed, Embase, Web of Science, Cochrane, Scopus, and Google Scholar databases. English-language articles, published from January 1, 2000, to March 1, 2022, relevant to the aforementioned aspects were selected using the key terms of artificial intelligence, machine learning, deep learning, artificial neural networks, convolutional neural networks, clustering, soft computing, automated planning, computational learning, computer vision, and automated reasoning as inclusion criteria. A manual search was also performed. Therefore, 157 articles were included, reviewed, and discussed.

CONCLUSIONS

Based on the current literature, the AI models have shown promising performance in the mentioned aspects when being compared with traditional approaches in terms of accuracy; however, as these models are still in development, more studies are required to validate their accuracy and apply them to routine clinical practice.

CLINICAL SIGNIFICANCE

AI with its specific functions has shown successful applications with acceptable accuracy in diverse aspects of restorative dentistry. The understanding of these functions may lead to novel applications with optimal accuracy for AI in restorative dentistry.

Automatic dental biofilm detection based on deep learning

AIM

To estimate the automated biofilm detection capacity of the U-Net neural network on tooth images.

MATERIALS AND METHODS

Two datasets of intra-oral photographs taken in the frontal and lateral views of permanent and deciduous dentitions were employed. The first dataset consisted of 96 photographs taken before and after applying a disclosing agent and was used to validate the domain's expert biofilm annotation (intra-class correlation coefficient = .93). The second dataset comprised 480 photos, with or without orthodontic appliances, and without disclosing agents, and was used to train the neural network to segment the biofilm. Dental biofilm labelled by the dentist (without disclosing agents) was considered the ground truth. Segmentation performance was measured using accuracy, F1 score, sensitivity, and specificity.

RESULTS

The U-Net model achieved an accuracy of 91.8%, F1 score of 60.6%, specificity of 94.4%, and sensitivity of 67.2%. The accuracy was higher in the presence of orthodontic appliances (92.6%).

CONCLUSIONS

Visually segmenting dental biofilm employing a U-Net is feasible and can assist professionals and patients in identifying dental biofilm, thus improving oral hygiene and health.

Detection of intracranial aneurysms using deep learning-based CAD system: usefulness of the scores of CNN's final layer for distinguishing between aneurysm and infundibular dilatation

PURPOSE

We evaluated the diagnostic performance of a clinically available deep learning-based computer-assisted diagnosis software for detecting unruptured aneurysms (UANs) using magnetic resonance angiography and assessed the functionality of the convolutional neural network (CNN) final layer score for distinguishing between UAN and infundibular dilatation (ID).

MATERIALS AND METHODS

EIRL brain aneurysm (EIRL_BA) was used in this study. The subjects were 117 UAN and/or ID cases including 100 UAN lesions (average sizes of 2.56 ± 1.45 mm) and 40 ID lesions (average sizes of 1.75 ± 0.41 mm) in any of internal carotid artery, middle cerebral artery, and anterior communicating artery, and 123 normal controls. The sensitivity, specificity, and accuracy of EIRL_BA were determined for UAN and ID or UAN only. Furthermore, the relationship between the lesion category and score was examined using a linear regression analysis model, and the receiver operating characteristic (ROC) analysis was used to assess whether the scores represent UAN-like characteristics.

RESULTS

EIRL_BA showed a total of 203 candidates (an average of 1.73/case) in UAN and/or ID cases and 98 candidates (an average of 0.80/case) in normal controls. For diagnosing either UAN/ID, EIRL_BA showed an overall sensitivity of 80%, specificity of 84.2%, and accuracy of 83.7%, resulting in the positive likelihood ratio of 5.0. For diagnosing UAN only, the overall sensitivity of 89.0, specificity of 82.6%, and accuracy of 83.2% resulting in the positive likelihood ratio of 5.1. In a linear regression analysis, the scores significantly increased in the candidates' first and second ranks in UAN (p < 0.05) but not in ID. An ROC analysis using the score for diagnosing UAN showed an area under the curve of 0.836.

CONCLUSION

EIRL_BA is applicable for detecting small UAN, and the CNN's final layer scores may be an effective index for discriminating UAN and ID and representing the likelihood of UAN.

Deep Learning Models to Predict Fatal Pneumonia Using Chest X-Ray Images

Background and Aims. Chest X-ray (CXR) is indispensable to the assessment of severity, diagnosis, and management of pneumonia. Deep learning is an artificial intelligence (AI) technology that has been applied to the interpretation of medical images. This study investigated the feasibility of classifying fatal pneumonia based on CXR images using deep learning models on publicly available platforms. Methods. CXR images of patients with pneumonia at diagnosis were labeled as fatal or nonfatal based on medical records. We applied CXR images from 1031 patients with nonfatal pneumonia and 243 patients with fatal pneumonia for training and self-evaluation of the deep learning models. All labeled CXR images were randomly allocated to the training, validation, and test datasets of deep learning models. Data augmentation techniques were not used in this study. We created two deep learning models using two publicly available platforms. Results. The first model showed an area under the precision-recall curve of 0.929 with a sensitivity of 50.0% and a specificity of 92.4% for classifying fatal pneumonia. We evaluated the performance of our deep learning models using sensitivity, specificity, PPV, negative predictive value (NPV), accuracy, and F1 score. Using the external validation test dataset of 100 CXR images, the sensitivity, specificity, accuracy, and F1 score were 68.0%, 86.0%, 77.0%, and 74.7%, respectively. In the original dataset, the performance of the second model showed a sensitivity, specificity, and accuracy of 39.6%, 92.8%, and 82.7%, respectively, while external validation showed values of 38.0%, 92.0%, and 65.0%, respectively. The F1 score was 52.1%. These results were comparable to those obtained by respiratory physicians and residents. Conclusions. The deep learning models yielded good accuracy in classifying fatal pneumonia. By further improving the performance, AI could assist physicians in the severity assessment of patients with pneumonia.

Three-dimensional conditional generative adversarial network-based virtual thin-slice technique for the morphological evaluation of the spine

Virtual thin-slice (VTS) technique is a generative adversarial network-based algorithm that can generate virtual 1-mm-thick CT images from images of 3–10-mm thickness. We evaluated the performance of VTS technique for assessment of the spine. VTS was applied to 4-mm-thick CT images of 73 patients, and the visibility of intervertebral spaces was evaluated on the 4-mm-thick and VTS images. The heights of vertebrae measured on sagittal images reconstructed from the 4-mm-thick images and VTS images were compared with those measured on images reconstructed from 1-mm-thick images. Diagnostic performance for the detection of compression fractures was also compared. The intervertebral spaces were significantly more visible on the VTS images than on the 4-mm-thick images (P < 0.001). The absolute value of the measured difference in mean vertebral height between the VTS and 1-mm-thick images was smaller than that between the 4-mm-thick and 1-mm-thick images (P < 0.01–0.54). The diagnostic performance of the VTS images for detecting compression fracture was significantly lower than that of the 4-mm-thick images for one reader (P = 0.02). VTS technique enabled the identification of each vertebral body, and enabled accurate measurement of vertebral height. However, this technique is not suitable for diagnosing compression fractures.

Psychological Mobilization of Innovative Teaching Methods for Students' Basic Educational Curriculum Reform Under Deep Learning

Educational innovation reform is used as the background. In response to the need to propose innovative educational programs, the concepts of Distributed Deep Neural Network (DDNN) and deep learning under edge computing are used as the basis. A teaching program for Science Technology Engineering Mathematics (STEM) is proposed. The average training method is used to verify the performance of the model. Sampling rate means the number of samples per second taken from a continuous signal to form a discrete signal. The accuracy and sample ratio obtained are higher than 95%. The communication volume is 309 bytes, which is in a good range. On this basis, a university uses STEM teaching plans and questionnaires to influence the psychological mobilization factors of students' deep learning effects. Challenging learning tasks and learning motivation have the greatest impact on deep learning, and conclusions that both are positive effects are obtained. Therefore, STEM innovative teaching programs can be widely used. The plan provides a reference theory for improving teaching innovation in the context of the basic educational curriculum reform in China. STEM curriculum is the dual subject of teachers and students, and the learning community includes multi-stakeholders. There are hierarchical relationships among the subjects. In terms of financial support, the first two funds come from the school. Learning communities have dedicated sponsorship partners complemented by clear financial planning. There is not much difference in course resources. Still, the learning community will provide more diversified media forms and special websites, and other auxiliary resources are open to all users. They can obtain first-hand resources without applying. In terms of project form, in addition to the core classroom teaching, the latter two can provide richer activities and realize the diversity of time, space, and information exchange.

Radiologists with and without deep learning-based computer-aided diagnosis: comparison of performance and interobserver agreement for characterizing and diagnosing pulmonary nodules/masses

OBJECTIVES

To compare the performance of radiologists in characterizing and diagnosing pulmonary nodules/masses with and without deep learning (DL)-based computer-aided diagnosis (CAD).

METHODS

We studied a total of 101 nodules/masses detected on CT performed between January and March 2018 at Osaka University Hospital (malignancy: 55 cases). SYNAPSE SAI Viewer V1.4 was used to analyze the nodules/masses. In total, 15 independent radiologists were grouped (n = 5 each) according to their experience: L (< 3 years), M (3-5 years), and H (> 5 years). The likelihoods of 15 characteristics, such as cavitation and calcification, and the diagnosis (malignancy) were evaluated by each radiologist with and without CAD, and the assessment time was recorded. The AUCs compared with the reference standard set by two board-certified chest radiologists were analyzed following the multi-reader multi-case method. Furthermore, interobserver agreement was compared using intraclass correlation coefficients (ICCs).

RESULTS

The AUCs for ill-defined boundary, irregular margin, irregular shape, calcification, pleural contact, and malignancy in all 15 radiologists, irregular margin and irregular shape in L and ill-defined boundary and irregular margin in M improved significantly (p < 0.05); no significant improvements were found in H. L showed the greatest increase in the AUC for malignancy (not significant). The ICCs improved in all groups and for nearly all items. The median assessment time was not prolonged by CAD.

CONCLUSIONS

DL-based CAD helps radiologists, particularly those with < 5 years of experience, to accurately characterize and diagnose pulmonary nodules/masses, and improves the reproducibility of findings among radiologists.

KEY POINTS

• Deep learning-based computer-aided diagnosis improves the accuracy of characterizing nodules/masses and diagnosing malignancy, particularly by radiologists with < 5 years of experience. • Computer-aided diagnosis increases not only the accuracy but also the reproducibility of the findings across radiologists.

Introduction to Deep Learning in Clinical Neuroscience

The use of deep learning (DL) is rapidly increasing in clinical neuroscience. The term denotes models with multiple sequential layers of learning algorithms, architecturally similar to neural networks of the brain. We provide examples of DL in analyzing MRI data and discuss potential applications and methodological caveats.Important aspects are data pre-processing, volumetric segmentation, and specific task-performing DL methods, such as CNNs and AEs. Additionally, GAN-expansion and domain mapping are useful DL techniques for generating artificial data and combining several smaller datasets.We present results of DL-based segmentation and accuracy in predicting glioma subtypes based on MRI features. Dice scores range from 0.77 to 0.89. In mixed glioma cohorts, IDH mutation can be predicted with a sensitivity of 0.98 and specificity of 0.97. Results in test cohorts have shown improvements of 5-7% in accuracy, following GAN-expansion of data and domain mapping of smaller datasets.The provided DL examples are promising, although not yet in clinical practice. DL has demonstrated usefulness in data augmentation and for overcoming data variability. DL methods should be further studied, developed, and validated for broader clinical use. Ultimately, DL models can serve as effective decision support systems, and are especially well-suited for time-consuming, detail-focused, and data-ample tasks.

Convolutional neural networks (CNNs): concepts and applications in pharmacogenomics

Convolutional neural networks (CNNs) have been used to extract information from various datasets of different dimensions. This approach has led to accurate interpretations in several subfields of biological research, like pharmacogenomics, addressing issues previously faced by other computational methods. With the rising attention for personalized and precision medicine, scientists and clinicians have now turned to artificial intelligence systems to provide them with solutions for therapeutics development. CNNs have already provided valuable insights into biological data transformation. Due to the rise of interest in precision and personalized medicine, in this review, we have provided a brief overview of the possibilities of implementing CNNs as an effective tool for analyzing one-dimensional biological data, such as nucleotide and protein sequences, as well as small molecular data, e.g., simplified molecular-input line-entry specification, InChI, binary fingerprints, etc., to categorize the models based on their objective and also highlight various challenges. The review is organized into specific research domains that participate in pharmacogenomics for a more comprehensive understanding. Furthermore, the future intentions of deep learning are outlined.

The emerging role of deep learning in cytology

Deep learning (DL) is a component or subset of artificial intelligence. DL has contributed significant change in feature extraction and image classification. Various algorithmic models are used in DL such as a convolutional neural network (CNN), recurrent neural network, restricted Boltzmann machine, deep belief network and autoencoders. Of these, CNN is the most commonly used algorithm in the field of pathology for feature extraction and building neural network models. DL may be useful for tumour diagnosis, classification of the tumour and grading of the tumour in cytology. In this brief review, the basic concept of the DL and CNN are described. The application, prospects and challenges of the DL in the cytology are also discussed.

A primer for understanding radiology articles about machine learning and deep learning

The application of machine learning and deep learning in the field of imaging is rapidly growing. Although the principles of machine and deep learning are unfamiliar to the majority of clinicians, the basics are not so complicated. One of the major issues is that commentaries written by experts are difficult to understand, and are not primarily written for clinicians. The purpose of this article was to describe the different concepts behind machine learning, radiomics, and deep learning to make clinicians more familiar with these techniques.