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Scaife K, Taylor SL, Pařenicová L, Goodman RE, Vo TD, Leune E, Abdelmoteleb M, Dommels Y. In silico evaluation of the potential allergenicity of a fungal biomass from Rhizomucor pusillus for use as a novel food ingredient. Regul Toxicol Pharmacol 2024; 150:105629. [PMID: 38657894 DOI: 10.1016/j.yrtph.2024.105629] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Revised: 04/04/2024] [Accepted: 04/17/2024] [Indexed: 04/26/2024]
Abstract
The world's hunger for novel food ingredients drives the development of safe, sustainable, and nutritious novel food products. For foods containing novel proteins, potential allergenicity of the proteins is a key safety consideration. One such product is a fungal biomass obtained from the fermentation of Rhizomucor pusillus. The annotated whole genome sequence of this strain was subjected to sequence homology searches against the AllergenOnline database (sliding 80-amino acid windows and full sequence searches). In a stepwise manner, proteins were designated as potentially allergenic and were further compared to proteins from commonly consumed foods and from humans. From the sliding 80-mer searches, 356 proteins met the conservative >35% Codex Alimentarius threshold, 72 of which shared ≥50% identity over the full sequence. Although matches were identified between R. pusillus proteins and proteins from allergenic food sources, the matches were limited to minor allergens from these sources, and they shared a greater degree of sequence homology with those from commonly consumed foods and human proteins. Based on the in silico analysis and a literature review for the source organism, the risk of allergenic cross-reactivity of R. pusillus is low.
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Affiliation(s)
- Kevin Scaife
- Intertek Health Sciences Inc., 2233 Argentia Road, Suite 201, Mississauga, ON, L5N 2X7, Canada.
| | - Steve L Taylor
- Taylor Consulting LLC, 941 Evergreen Drive, Lincoln, NE, 68510, USA
| | - Lucie Pařenicová
- The Protein Brewery B.V., Goeseelsstraat 10, 4817 MV, Breda, the Netherlands; BioXact B.V., Böttgerwater 44, 2497 ZJ, Den Haag, the Netherlands
| | - Richard E Goodman
- RE Goodman Consulting LLC, 8110 Dougan Circle, Lincoln, NE, 68516, USA
| | - Trung D Vo
- Intertek Health Sciences Inc., 2233 Argentia Road, Suite 201, Mississauga, ON, L5N 2X7, Canada
| | - Elisa Leune
- The Protein Brewery B.V., Goeseelsstraat 10, 4817 MV, Breda, the Netherlands
| | - Mohamed Abdelmoteleb
- Mohamed Abdelmoteleb, Botany Department, Faculty of Science, Mansoura University, Mansoura, 35516, Egypt
| | - Yvonne Dommels
- The Protein Brewery B.V., Goeseelsstraat 10, 4817 MV, Breda, the Netherlands
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Aggarwal B, Rajora N, Raturi G, Dhar H, Kadam SB, Mundada PS, Shivaraj SM, Varshney V, Deshmukh R, Barvkar VT, Salvi P, Sonah H. Biotechnology and urban agriculture: A partnership for the future sustainability. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2024; 338:111903. [PMID: 37865210 DOI: 10.1016/j.plantsci.2023.111903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Accepted: 10/18/2023] [Indexed: 10/23/2023]
Abstract
The global population is growing rapidly, and with it, the demand for food. In the coming decades, more and more people will be living in urban areas, where land for traditional agriculture is scarce. Urban agriculture can help to meet this growing demand for food in a sustainable way. Urban agriculture is the practice of growing food in urban areas. It can be done on rooftops, balconies, vacant lots, and even in alleyways. Urban agriculture can produce a variety of crops, including fruits, vegetables, and herbs. It can also help to improve air quality, reduce stormwater runoff, and create jobs. Biotechnology can be used to improve the efficiency and sustainability of urban agriculture. Biotechnological tools can be used to develop crops that are resistant to pests and diseases, that are more tolerant of drought and heat, and that have higher yields. Biotechnology can also be used to improve the nutritional value of crops. This review article discusses the need for and importance of urban agriculture, biotechnology, and genome editing in meeting the growing demand for food in urban areas. It also discusses the potential of biotechnology to improve the sustainability of urban agriculture.
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Affiliation(s)
- Bharti Aggarwal
- National Agri-Food Biotechnology Institute (NABI), Mohali, India
| | - Nitika Rajora
- National Agri-Food Biotechnology Institute (NABI), Mohali, India
| | - Gaurav Raturi
- National Agri-Food Biotechnology Institute (NABI), Mohali, India
| | - Hena Dhar
- Department of Microbiology, School of Biosciences, RIMT University, Mandi Gobindgarh, India
| | - Swapnil B Kadam
- Department of Botany, Savitribai Phule Pune University, Pune, India
| | - Pankaj S Mundada
- Department of Biotechnology, Yashavantrao Chavan Institute of Science, Satara, India
| | - S M Shivaraj
- National Agri-Food Biotechnology Institute (NABI), Mohali, India; Department of Science, Alliance University, Bengaluru, Karnataka, India
| | - Vishal Varshney
- Govt. Shaheed Gend Singh College, Charama, Chhattisgarh, India
| | - Rupesh Deshmukh
- Department of Biotechnology, Central University of Haryana (CUH), Mahendergarh, India
| | | | - Prafull Salvi
- National Agri-Food Biotechnology Institute (NABI), Mohali, India.
| | - Humira Sonah
- Department of Biotechnology, Central University of Haryana (CUH), Mahendergarh, India.
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Papia F, Bellia C, Uasuf CG. Tropomyosin: A panallergen that causes a worldwide allergic problem. Allergy Asthma Proc 2021; 42:e145-e151. [PMID: 34474717 DOI: 10.2500/aap.2021.42.210057] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Background: Panallergens are proteins that take part in key processes of organisms and, therefore, are ubiquitously distributed with highly conserved sequences and structures. One class of these panallergens is composed of the tropomyosins. The highly heat-stable tropomyosins comprise the major allergens in crustaceans and mollusks, which make them important food allergens in exposed populations. Tropomyosins are responsible for a widespread immunoglobulin E cross-reactivity among allergens from different sources. Allergic tropomyosins are expressed in many species, including parasites and insects. Methods: This panallergen class is divided, according to it capacity of induced allergic symptoms, into allergenic or nonallergenic tropomyosin. Although vertebrate tropomyosins share ∼55% of sequence homology with invertebrate tropomyosins, it has been thought that the invertebrate tropomyosins would not have allergic properties. Nevertheless, in recent years, this opinion has been changed. In particular, tropomyosin has been recognized as a major allergen in many insects. Results: A high grade of homology has been shown among tropomyosins from different species, such as crustaceans and insects, which supports the hypothesis of cross-reactivity among tropomyosins from divergent species. Moreover, the emerging habit of consuming edible insects has drawn the attention of allergists to invertebrate tropomyosin protein due to its potential allergenic risk. Nevertheless, evidence about tropomyosin involvement in clinical allergic response is still scarce and deserves more investigation. Conclusion: This review intended to report allergic reactions associated with different tropomyosins when considering house dust mites, parasites, seafood, and insects, and to summarize our current knowledge about its cross-reactivity because this could help physicians to accurately diagnose patients with food allergy.
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Affiliation(s)
- Francesco Papia
- From the Allergy Diseases Center, “Prof. Giovanni Bonsignore” Institute for Biomedical Research and Innovation-National Research Council, Palermo, Italy; and
| | - Chiara Bellia
- Department of Biomedicine, Neuroscience and Advanced Diagnostics, University of Palermo, Palermo, Italy
| | - Carina Gabriela Uasuf
- From the Allergy Diseases Center, “Prof. Giovanni Bonsignore” Institute for Biomedical Research and Innovation-National Research Council, Palermo, Italy; and
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van Ree R, Sapiter Ballerda D, Berin MC, Beuf L, Chang A, Gadermaier G, Guevera PA, Hoffmann-Sommergruber K, Islamovic E, Koski L, Kough J, Ladics GS, McClain S, McKillop KA, Mitchell-Ryan S, Narrod CA, Pereira Mouriès L, Pettit S, Poulsen LK, Silvanovich A, Song P, Teuber SS, Bowman C. The COMPARE Database: A Public Resource for Allergen Identification, Adapted for Continuous Improvement. FRONTIERS IN ALLERGY 2021; 2:700533. [PMID: 35386979 PMCID: PMC8974746 DOI: 10.3389/falgy.2021.700533] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Accepted: 07/06/2021] [Indexed: 11/14/2022] Open
Abstract
Motivation: The availability of databases identifying allergenic proteins via a transparent and consensus-based scientific approach is of prime importance to support the safety review of genetically-modified foods and feeds, and public safety in general. Over recent years, screening for potential new allergens sequences has become more complex due to the exponential increase of genomic sequence information. To address these challenges, an international collaborative scientific group coordinated by the Health and Environmental Sciences Institute (HESI), was tasked to develop a contemporary, adaptable, high-throughput process to build the COMprehensive Protein Allergen REsource (COMPARE) database, a publicly accessible allergen sequence data resource along with bioinformatics analytical tools following guidelines of FAO/WHO and CODEX Alimentarius Commission. Results: The COMPARE process is novel in that it involves the identification of candidate sequences via automated keyword-based sorting algorithm and manual curation of the annotated sequence entries retrieved from public protein sequence databases on a yearly basis; its process is meant for continuous improvement, with updates being transparently documented with each version; as a complementary approach, a yearly key-word based search of literature databases is added to identify new allergen sequences that were not (yet) submitted to protein databases; in addition, comments from the independent peer-review panel are posted on the website to increase transparency of decision making; finally, sequence comparison capabilities associated with the COMPARE database was developed to evaluate the potential allergenicity of proteins, based on internationally recognized guidelines, FAO/WHO and CODEX Alimentarius Commission
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Affiliation(s)
- Ronald van Ree
- Departments of Experimental Immunology and of Otorhinolaryngology, Amsterdam University Medical Centers, Amsterdam, Netherlands
| | - Dexter Sapiter Ballerda
- Joint Institute for Food Safety and Applied Nutrition (JIFSAN), University of Maryland, College Park, MD, United States
| | - M. Cecilia Berin
- Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, United States
| | - Laurent Beuf
- Limagrain Field Seeds, Centre de Recherche, Route d'Ennezat, Chappes, France
| | - Alexander Chang
- Joint Institute for Food Safety and Applied Nutrition (JIFSAN), University of Maryland, College Park, MD, United States
| | - Gabriele Gadermaier
- Department of Biosciences, Paris Lodron University of Salzburg, Salzburg, Austria
| | - Paul A. Guevera
- Joint Institute for Food Safety and Applied Nutrition (JIFSAN), University of Maryland, College Park, MD, United States
| | | | - Emir Islamovic
- Regulatory Science Seeds and Traits, BASF Corporation, Morrisville, NC, United States
| | - Liisa Koski
- Health and Environmental Sciences Institute (HESI), Washington, DC, United States
| | - John Kough
- Office of Pesticide Programs, Microbial Pesticides Branch, US Environmental Protection Agency, Washington, DC, United States
| | | | - Scott McClain
- Syngenta Crop Protection LLC, Research Triangle Park, NC, United States
| | - Kyle A. McKillop
- Joint Institute for Food Safety and Applied Nutrition (JIFSAN), University of Maryland, College Park, MD, United States
| | | | - Clare A. Narrod
- Joint Institute for Food Safety and Applied Nutrition (JIFSAN), University of Maryland, College Park, MD, United States
| | - Lucilia Pereira Mouriès
- Health and Environmental Sciences Institute (HESI), Washington, DC, United States
- *Correspondence: Lucilia Pereira Mouriès
| | - Syril Pettit
- Health and Environmental Sciences Institute (HESI), Washington, DC, United States
| | - Lars K. Poulsen
- Allergy Clinic, Department of Dermatology and Allergy, Gentofte Hospital, University of Copenhagen, Copenhagen, Denmark
| | - Andre Silvanovich
- Bayer U.S., Crop Science Regulatory Science Building FF4, Chesterfield, MO, United States
| | - Ping Song
- Seeds Regulatory Science, Corteva Agriscience LLC, Indianapolis, IN, United States
| | - Suzanne S. Teuber
- Department of Internal Medicine, School of Medicine, University of California, Davis, Davis, CA, United States
- Division of Rheumatology, Allergy, and Clinical Immunology, Davis, CA, United States
- Veterans Affairs Northern California Healthcare System, Mather, CA, United States
| | - Christal Bowman
- Formerly: Human Safety Regulatory Toxicology, Bayer CropScience LP, Research Triangle Park, NC, United States
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Evaluating the potential allergenicity of dietary proteins using model strong to non-allergenic proteins in germ-free mice. Food Chem Toxicol 2020; 141:111398. [PMID: 32437892 DOI: 10.1016/j.fct.2020.111398] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 04/29/2020] [Accepted: 04/30/2020] [Indexed: 11/22/2022]
Abstract
Currently no validated animal model is predictive of human responses in ranking purified dietary proteins in the prevalence or potency of food allergy in humans. Since the gastrointestinal microbiota is thought to influence oral tolerance, we hypothesize that a germ-free mouse model will more accurately predict atopic human responses than conventional mice. Germ-free C3H/HeN mice were immunized with 60 μg Ara h 2, BLG, or LOX by three weekly intraperitoneal (IP) injections with alum adjuvant. One week following the final immunization an IP challenge of 500 μg of Ara h 2, BLG, or LOX was administered. Thirty minutes post-challenge clinical scores were graded and body temperatures recorded. The presence of protein-specific IgE and mast cell protease concentrations in mouse sera were determined using ELISA. Upon challenge germ-free mice sensitized with Ara h 2 and BLG exhibited significantly more severe clinical scores compared to germ-free mice immunized with LOX. Hypothermic responses in challenged mice differed between the three proteins post-challenge. Results indicate that this model can differentiate between potent and non-allergens based on temperature drop, clinical scores, and biomarkers. Additional proteins with known human exposure and allergenicity are needed to confirm the predictive accuracy.
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Bublin M, Breiteneder H. Cross-reactivities of non-homologous allergens. Allergy 2020; 75:1019-1022. [PMID: 31745998 DOI: 10.1111/all.14120] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2019] [Revised: 11/06/2019] [Accepted: 11/12/2019] [Indexed: 01/03/2023]
Affiliation(s)
- Merima Bublin
- Institute of Pathophysiology and Allergy Research Medical University of Vienna Vienna Austria
| | - Heimo Breiteneder
- Institute of Pathophysiology and Allergy Research Medical University of Vienna Vienna Austria
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Garino C, Zagon J, Braeuning A. Insects in food and feed - allergenicity risk assessment and analytical detection. EFSA J 2019; 17:e170907. [PMID: 32626465 PMCID: PMC7015479 DOI: 10.2903/j.efsa.2019.e170907] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
Insects and insect‐based food products have entered in the European market, carrying along issues of safety and the need of establishing a new legal framework. The consumption of massively reared insects can pose chemical and microbiological risks, and insect proteins are likely to represent a hazard for a subpopulation of allergic individuals. All insect‐based products are considered ‘Novel Food’ and fall under EU regulation 2015/2283, according to which a specific application to the European Commission, followed by EFSA scientific evaluation, is needed before the product is put on the market. The recent EU Regulation 2017/893, entered into force on 1 July 2017, allowed a shortlist of seven insect species to be included in the formulation of feeds for aquaculture. Previously, the addition of any insect to any feed for farmed animals was not allowed, due to the risk of prion‐derived diseases. The introduction of this new Regulation raises the issue to switch from a classical detection method based on microscopy to a more sophisticated and species‐specific method. The overall aims of this EU‐FORA project were (i) to set up a new next generation sequencing (NGS)‐based molecular method for the identification of insect DNA in feeds for aquaculture; and (ii) to carry out a conceptual work on a probabilistic quantitative risk assessment focused on the allergenicity of yellow mealworm (Tenebrio molitor) employed in foods.
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8
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Ladics GS. Assessment of the potential allergenicity of genetically-engineered food crops. J Immunotoxicol 2018; 16:43-53. [PMID: 30409058 DOI: 10.1080/1547691x.2018.1533904] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
An extensive safety assessment process exists for genetically-engineered (GE) crops. The assessment includes an evaluation of the introduced protein as well as the crop containing the protein with the goal of demonstrating the GE crop is "as-safe-as" non-GE crops in the food supply. One of the evaluations for GE crops is to assess the expressed protein for allergenic potential. Currently, no single factor is recognized as a predictor for protein allergenicity. Therefore, a weight-of-the-evidence approach, which accounts for a variety of factors and approaches for an overall assessment of allergenic potential, is conducted. This assessment includes an evaluation of the history of exposure and safety of the gene(s) source; protein structure (e.g. amino acid sequence identity to human allergens); stability of the protein to pepsin digestion in vitro; heat stability of the protein; glycosylation status; and when appropriate, specific IgE binding studies with sera from relevant clinically allergic subjects. Since GE crops were first commercialized over 20 years ago, there is no proof that the introduced novel protein(s) in any commercialized GE food crop has caused food allergy.
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Delaney B, Goodman RE, Ladics GS. Food and Feed Safety of Genetically Engineered Food Crops. Toxicol Sci 2017; 162:361-371. [DOI: 10.1093/toxsci/kfx249] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Affiliation(s)
- Bryan Delaney
- DuPont Pioneer, International, Inc, 8325 N 62nd Avenue, Johnston, IA 50131, USA
| | - Richard E Goodman
- Food Science & Technology, University of Nebraska, 1901 North 21St Street, Lincoln Nebraska, Lincoln, NE 68588, USA
| | - Gregory S Ladics
- DuPont Haskell Laboratory, 1090 Elkton Road, Newark, DE, 19711, USA
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Goodman RE, Ebisawa M, Ferreira F, Sampson HA, van Ree R, Vieths S, Baumert JL, Bohle B, Lalithambika S, Wise J, Taylor SL. AllergenOnline: A peer-reviewed, curated allergen database to assess novel food proteins for potential cross-reactivity. Mol Nutr Food Res 2016; 60:1183-98. [PMID: 26887584 DOI: 10.1002/mnfr.201500769] [Citation(s) in RCA: 98] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2016] [Revised: 02/04/2016] [Accepted: 02/09/2016] [Indexed: 01/15/2023]
Abstract
SCOPE Increasingly regulators are demanding evaluation of potential allergenicity of foods prior to marketing. Primary risks are the transfer of allergens or potentially cross-reactive proteins into new foods. AllergenOnline was developed in 2005 as a peer-reviewed bioinformatics platform to evaluate risks of new dietary proteins in genetically modified organisms (GMO) and novel foods. METHODS AND RESULTS The process used to identify suspected allergens and evaluate the evidence of allergenicity was refined between 2010 and 2015. Candidate proteins are identified from the NCBI database using keyword searches, the WHO/IUIS nomenclature database and peer reviewed publications. Criteria to classify proteins as allergens are described. Characteristics of the protein, the source and human subjects, test methods and results are evaluated by our expert panel and archived. Food, inhalant, salivary, venom, and contact allergens are included. Users access allergen sequences through links to the NCBI database and relevant references are listed online. Version 16 includes 1956 sequences from 778 taxonomic-protein groups that are accepted with evidence of allergic serum IgE-binding and/or biological activity. CONCLUSION AllergenOnline provides a useful peer-reviewed tool for identifying the primary potential risks of allergy for GMOs and novel foods based on criteria described by the Codex Alimentarius Commission (2003).
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Affiliation(s)
- Richard E Goodman
- Food Allergy Research and Resource Program, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA
| | - Motohiro Ebisawa
- Department of Allergy, Sagamihara National Hospital, Sagamihara, Japan
| | - Fatima Ferreira
- Department of Molecular Biology, University of Salzburg, Salzburg, Austria
| | - Hugh A Sampson
- Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY, USA
| | - Ronald van Ree
- Departments of Experimental Immunology and of Otorhinolaryngology, Academic Medical Center, Amsterdam, The Netherlands
| | - Stefan Vieths
- Department of Allergology, Paul-Ehrlich-Institut, Langen, Germany
| | - Joseph L Baumert
- Food Allergy Research and Resource Program, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA
| | - Barbara Bohle
- Department of Pathophysiology and Allergy Research, Medical University of Vienna, Vienna, Austria
| | - Sreedevi Lalithambika
- Food Allergy Research and Resource Program, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA
| | - John Wise
- Food Allergy Research and Resource Program, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA
| | - Steve L Taylor
- Food Allergy Research and Resource Program, Department of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, USA
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Hirano K, Hino S, Oshima K, Nadano D, Urisu A, Takaiwa F, Matsuda T. Evaluation of allergenic potential for rice seed protein components utilizing a rice proteome database and an allergen database in combination with IgE-binding of recombinant proteins. Biosci Biotechnol Biochem 2016; 80:564-73. [DOI: 10.1080/09168451.2015.1116927] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
Abstract
Among 131 rice endosperm proteins previously identified by MS-based proteomics, most of the proteins showed low or almost no sequence similarity to known allergens in databases, whereas nine proteins did it significantly. The sequence of two proteins showed high overall identity with Hsp70-like hazel tree pollen allergen (Cor a 10) and barley α-amylase (Hor v 16), respectively, whereas the others showed low identity (28–58%) with lemon germin-like protein (Cit l 1), corn zein (Zea m 50 K), wheat chitinase-like xylanase inhibitor (Tri a XI), and kinase-like pollen allergen of Russian thistle (Sal k 1). Immuno-dot blot analysis showed that recombinant proteins for these rice seed homologs were positive in the IgE-binding, but not necessarily similarity dependent, from some allergic patients. These results suggest that utilization of proteome and sequence databases in combination with IgE-binding analysis was effective to screen and evaluate allergenic potential of rice seed protein components.
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Affiliation(s)
- Kana Hirano
- Department of Applied Molecular Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
- Department of Food and Nutritional Environment, College of Human Life Environment, Kinjo Gakuin University, Nagoya, Japan
| | - Shingo Hino
- Department of Applied Molecular Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
- Faculty of Agriculture, Department of Applied Biological Chemistry, Shizuoka University, Shizuoka, Japan
| | - Kenzi Oshima
- Department of Applied Molecular Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
| | - Daita Nadano
- Department of Applied Molecular Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
| | - Atsuo Urisu
- Department of Pediatrics, Fujita Health University, The Second Teaching Hospital, Nagoya, Japan
| | - Fumio Takaiwa
- Transgenic Crop Research and Development Center, National Institute of Agrobiological Sciences, Tsukuba, Japan
| | - Tsukasa Matsuda
- Department of Applied Molecular Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan
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12
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Food safety assessment of Cry8Ka5 mutant protein using Cry1Ac as a control Bt protein. Food Chem Toxicol 2015; 81:81-91. [DOI: 10.1016/j.fct.2015.04.008] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2014] [Revised: 02/01/2015] [Accepted: 04/03/2015] [Indexed: 12/22/2022]
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Araki M, Ishii T. Towards social acceptance of plant breeding by genome editing. TRENDS IN PLANT SCIENCE 2015; 20:145-9. [PMID: 25726138 DOI: 10.1016/j.tplants.2015.01.010] [Citation(s) in RCA: 99] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/21/2014] [Revised: 12/05/2014] [Accepted: 01/19/2015] [Indexed: 05/20/2023]
Abstract
Although genome-editing technologies facilitate efficient plant breeding without introducing a transgene, it is creating indistinct boundaries in the regulation of genetically modified organisms (GMOs). Rapid advances in plant breeding by genome-editing require the establishment of a new global policy for the new biotechnology, while filling the gap between process-based and product-based GMO regulations. In this Opinion article we review recent developments in producing major crops using genome-editing, and we propose a regulatory model that takes into account the various methodologies to achieve genetic modifications as well as the resulting types of mutation. Moreover, we discuss the future integration of genome-editing crops into society, specifically a possible response to the 'Right to Know' movement which demands labeling of food that contains genetically engineered ingredients.
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Affiliation(s)
- Motoko Araki
- Office of Health and Safety, Hokkaido University, Sapporo 060-0808, Hokkaido, Japan
| | - Tetsuya Ishii
- Office of Health and Safety, Hokkaido University, Sapporo 060-0808, Hokkaido, Japan.
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14
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Mathur C, Kathuria PC, Dahiya P, Singh AB. Lack of detectable allergenicity in genetically modified maize containing "Cry" proteins as compared to native maize based on in silico & in vitro analysis. PLoS One 2015; 10:e0117340. [PMID: 25706412 PMCID: PMC4338076 DOI: 10.1371/journal.pone.0117340] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2014] [Accepted: 12/23/2014] [Indexed: 12/26/2022] Open
Abstract
Background Genetically modified, (GM) crops with potential allergens must be evaluated for safety and endogenous IgE binding pattern compared to native variety, prior to market release. Objective To compare endogenous IgE binding proteins of three GM maize seeds containing Cry 1Ab,1Ac,1C transgenic proteins with non GM maize. Methods An integrated approach of in silico & in vitro methods was employed. Cry proteins were tested for presence of allergen sequence by FASTA in allergen databases. Biochemical assays for maize extracts were performed. Specific IgE (sIgE) and Immunoblot using food sensitized patients sera (n = 39) to non GM and GM maize antigens was performed. Results In silico approaches, confirmed for non sequence similarity of stated transgenic proteins in allergen databases. An insignificant (p> 0.05) variation in protein content between GM and non GM maize was observed. Simulated Gastric Fluid (SGF) revealed reduced number of stable protein fractions in GM then non GM maize which might be due to shift of constituent protein expression. Specific IgE values from patients showed insignificant difference in non GM and GM maize extracts. Five maize sensitized cases, recognized same 7 protein fractions of 88-28 kD as IgE bindng in both GM and non-GM maize, signifying absence of variation. Four of the reported IgE binding proteins were also found to be stable by SGF. Conclusion Cry proteins did not indicate any significant similarity of >35% in allergen databases. Immunoassays also did not identify appreciable differences in endogenous IgE binding in GM and non GM maize.
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Affiliation(s)
- Chandni Mathur
- CSIR-Institute of Genomics & Integrative Biology, Delhi University Campus, Delhi, India
| | | | - Pushpa Dahiya
- Maharishi Dayanand University, Rohtak, Haryana, India
| | - Anand B. Singh
- CSIR-Institute of Genomics & Integrative Biology, Delhi University Campus, Delhi, India
- * E-mail:
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15
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Graf L, Hayder H, Mueller U. Endogenous allergens in the regulatory assessment of genetically engineered crops. Food Chem Toxicol 2014; 73:17-20. [PMID: 25128445 DOI: 10.1016/j.fct.2014.08.001] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2014] [Revised: 08/01/2014] [Accepted: 08/01/2014] [Indexed: 10/24/2022]
Abstract
A scientific approach to the assessment of foods derived from genetically engineered (GE) crops is critical to maintaining objectivity and public confidence in regulatory decisions. Principles developed at the international level support regulators and enable robust and transparent safety assessments. A comparison of key constituents in the GE crop with a suitable comparator is an important element of an assessment. In Europe, endogenous allergens would be included in the comparative analysis, however this approach has been hindered by technical limitations on the ability to accurately measure identified allergenic proteins. Over recent years, improved proteomic methods have enabled researchers to focus on major allergenic proteins in conventional food crops, as information on natural variability is largely lacking. Emerging data for soybean indicate that variability in levels of major allergens already in the food supply is broad. This raises questions about the biological interpretation of differences between a GE plant and its conventional counterpart, in particular, whether any conclusions about altered allergenicity could be inferred. This paper discusses the scientific justification for requiring proteomic analysis of endogenous allergens as part of the evaluation. Ongoing scientific review and corresponding international discussion are integral to ensuring that data requirements address legitimate risk assessment questions.
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Affiliation(s)
- Lynda Graf
- Risk Assessment Branch, Food Standards Australia New Zealand, Canberra, Australia.
| | - Hikmat Hayder
- Risk Assessment Branch, Food Standards Australia New Zealand, Canberra, Australia
| | - Utz Mueller
- Risk Assessment Branch, Food Standards Australia New Zealand, Canberra, Australia
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16
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Affiliation(s)
- R. E. Goodman
- Department of Food Science and Technology, University of Nebraska–Lincoln, Lincoln, NE, U.S.A
- Corresponding author. Food Allergy Research and Resource Program, Department of Food Science and Technology, University of Nebraska–Lincoln, 143 Food Industry Complex, Lincoln, NE 68583-0955.Tel: +1.402.472.0452; Fax: +1.402.472.1693
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17
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Lupi R, Masci S, Rogniaux H, Tranquet O, Brossard C, Lafiandra D, Moneret-Vautrin D, Denery-Papini S, Larré C. Assessment of the allergenicity of soluble fractions from GM and commercial genotypes of wheats. J Cereal Sci 2014. [DOI: 10.1016/j.jcs.2014.02.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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18
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Moran DL, Tetteh AO, Goodman RE, Underwood MY. Safety assessment of the calcium-binding protein, apoaequorin, expressed by Escherichia coli. Regul Toxicol Pharmacol 2014; 69:243-9. [DOI: 10.1016/j.yrtph.2014.04.004] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2014] [Revised: 04/11/2014] [Accepted: 04/12/2014] [Indexed: 10/25/2022]
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19
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Ladics GS, Fry J, Goodman R, Herouet-Guicheney C, Hoffmann-Sommergruber K, Madsen CB, Penninks A, Pomés A, Roggen EL, Smit J, Wal JM. Allergic sensitization: screening methods. Clin Transl Allergy 2014; 4:13. [PMID: 24739743 PMCID: PMC3990213 DOI: 10.1186/2045-7022-4-13] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2013] [Accepted: 03/09/2014] [Indexed: 11/10/2022] Open
Abstract
Experimental in silico, in vitro, and rodent models for screening and predicting protein sensitizing potential are discussed, including whether there is evidence of new sensitizations and allergies since the introduction of genetically modified crops in 1996, the importance of linear versus conformational epitopes, and protein families that become allergens. Some common challenges for predicting protein sensitization are addressed: (a) exposure routes; (b) frequency and dose of exposure; (c) dose-response relationships; (d) role of digestion, food processing, and the food matrix; (e) role of infection; (f) role of the gut microbiota; (g) influence of the structure and physicochemical properties of the protein; and (h) the genetic background and physiology of consumers. The consensus view is that sensitization screening models are not yet validated to definitively predict the de novo sensitizing potential of a novel protein. However, they would be extremely useful in the discovery and research phases of understanding the mechanisms of food allergy development, and may prove fruitful to provide information regarding potential allergenicity risk assessment of future products on a case by case basis. These data and findings were presented at a 2012 international symposium in Prague organized by the Protein Allergenicity Technical Committee of the International Life Sciences Institute's Health and Environmental Sciences Institute.
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Affiliation(s)
- Gregory S Ladics
- DuPont Pioneer Agricultural Biotechnology, DuPont Experimental Station, 200 Powder Mill Road, Wilmington, DE 19880-0400, USA
| | - Jeremy Fry
- ProImmune Limited, The Magdalen Centre, The Oxford Science Park, Robert Robinson Avenue, Oxford OX4 4GA, United Kingdom
| | - Richard Goodman
- Department of Food Science & Technology, Food Allergy Research and Resource Program, University of Nebraska–Lincoln, 143 Food Industry Complex, Lincoln, Nebraska, USA
| | | | - Karin Hoffmann-Sommergruber
- Department of Pathophysiology and Allergy Research, Medical University of Vienna, Waehringer Guertel 18-20, A-1090 Vienna, Austria
| | - Charlotte B Madsen
- Department of Toxicology and Risk Assessment, National Food Institute, Technical University of Denmark, 19, Mørkhøj Bygade, DK-2860 Søborg, Denmark
| | - André Penninks
- TNO Triskelion BV, Utrechtseweg 48, 3700 AV Zeist, Netherlands
| | - Anna Pomés
- Indoor Biotechnologies, Inc, 1216 Harris Street, Charlottesville, Virginia, USA
| | - Erwin L Roggen
- Novozymes AS and 3Rs Management and Consultancy, Krogshoejvej 36, 2880 Bagsvaerd, Denmark
| | - Joost Smit
- Institute for Risk Assessment Sciences, Utrecht University, Yalelaan 104, 3508 TD Utrecht, Netherlands
| | - Jean-Michel Wal
- AgroParisTech, Department SVS, 16 rue Claude Bernard, F-75231, Paris Cedex 05, France
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20
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Goodman RE, Panda R, Ariyarathna H. Evaluation of endogenous allergens for the safety evaluation of genetically engineered food crops: review of potential risks, test methods, examples and relevance. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2013; 61:8317-32. [PMID: 23848840 DOI: 10.1021/jf400952y] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
The safety of food produced from genetically engineered (GE) crops is assessed for potential risks of food allergy on the basis of an international consensus guideline outlined by the Codex Alimentarius Commission (2003). The assessment focuses on evaluation of the potential allergenicity of the newly expressed protein(s) as the primary potential risk using a process that markedly limits risks to allergic consumers. However, Codex also recommended evaluating a second concern, potential increases in endogenous allergens of commonly allergenic food crops that might occur due to insertion of the gene. Unfortunately, potential risks and natural variation of endogenous allergens in non-GE varieties are not understood, and risks from increases have not been demonstrated. Because regulatory approvals in some countries are delayed due to increasing demands for measuring endogenous allergens, we present a review of the potential risks of food allergy, risk management for food allergy, and test methods that may be used in these evaluations. We also present new data from our laboratory studies on the variation of the allergenic lipid transfer protein in non-GE maize hybrids as well as data from two studies of endogenous allergen comparisons for three GE soybean lines, their nearest genetic soy lines, and other commercial lines. We conclude that scientifically based limits of acceptable variation cannot been established without an understanding of natural variation in non-GE crops. Furthermore, the risks from increased allergen expression are minimal as the risk management strategy for food allergy is for allergic individuals to avoid consuming any food containing their allergenic source, regardless of the crop variety.
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Affiliation(s)
- Richard E Goodman
- Food Allergy Research and Resource Program, University of Nebraska-Lincoln , 143 Food Industry Complex, Lincoln, Nebraska 68583-0955, United States
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21
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Mirsky HP, Cressman RF, Ladics GS. Comparative assessment of multiple criteria for the in silico prediction of cross-reactivity of proteins to known allergens. Regul Toxicol Pharmacol 2013; 67:232-9. [PMID: 23933007 DOI: 10.1016/j.yrtph.2013.08.001] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2013] [Revised: 07/31/2013] [Accepted: 08/01/2013] [Indexed: 10/26/2022]
Abstract
Genetically modified crops are becoming important components of a sustainable food supply and must be brought to market efficiently while also safeguarding the public from cross-reactivity of novel proteins to known allergens. Bioinformatic assessments can help to identify proteins warranting further experimental checks for cross-reactivity. This study is a large-scale in silico evaluation of assessment criteria, including searches for: alignments between a query and an allergen having ≥ 35% identity over a length ≥ 80; any sequence (of some minimum length) found in both a query and an allergen; any alignment between a query and an allergen with an E-value below some threshold. The criteria and an allergen database (AllergenOnline) are used to assess 27,243 Viridiplantae proteins for potential allergenicity. (A protein is classed as a "real allergen" if it exceeds a test-specific level of identity to an AllergenOnline entry; assessment of real allergens in the query set is against a reduced database from which the identifying allergen has been removed.) Each criterion's ability to minimize false positives without increasing false negative levels of current methods is determined. At best, the data show a reduction in false positives to ∼6% (from ∼10% under current methods) without any increase in false negatives.
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Affiliation(s)
- Henry P Mirsky
- DuPont Pioneer, Route 141, Henry Clay Bldg, #400, Wilmington, DE 19880-0400, USA.
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22
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Dearman RJ, Beresford L, Foster ES, McClain S, Kimber I. Characterization of the allergenic potential of proteins: an assessment of the kiwifruit allergen actinidin. J Appl Toxicol 2013; 34:489-97. [PMID: 23754484 DOI: 10.1002/jat.2897] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2013] [Revised: 04/18/2013] [Accepted: 04/18/2013] [Indexed: 12/29/2022]
Abstract
Assessment of the potential allergenicity (IgE-inducing properties) of novel proteins is an important challenge in the overall safety assessment of foods. Resistance to digestion with pepsin is commonly measured to characterize allergenicity, although the association is not absolute. We have previously shown that specific IgE antibody production induced by systemic [intraperitoneal (i.p.)] exposure of BALB/c strain mice to a range of proteins correlates with allergenic potential for known allergens. The purpose of the present study was to explore further the utility of these approaches using the food allergen, actinidin. Recently, kiwifruit has become an important allergenic foodstuff, coincident with its increased consumption, particularly as a weaning food. The ability of the kiwifruit allergen actinidin to stimulate antibody responses has been compared with the reference allergen ovalbumin, and with the non-allergen bovine haemoglobin. Haemoglobin was rapidly digested by pepsin whereas actinidin was resistant unless subjected to prior chemical reduction (reflecting intracellular digestion conditions). Haemoglobin stimulated detectable IgG antibody production at relatively high doses (10%), but failed to provoke detectable IgE. In contrast, actinidin was both immunogenic and allergenic at relatively low doses (0.25% to 1%). Vigorous IgG and IgG1 antibody and high titre IgE antibody responses were recorded, similar to those provoked by ovalbumin. Thus, actinidin displays a marked ability to provoke IgE, consistent with allergenic potential. These data provide further encouragement that in tandem with analysis of pepsin stability, the induction of IgE after systemic exposure of BALB/c strain mice provides a useful approach for the prospective identification of protein allergens.
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Affiliation(s)
- Rebecca J Dearman
- Faculty of Life Sciences, The University of Manchester, Michael Smith Building, Oxford Road, Manchester, M13 9PT, UK
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23
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Genetically modified crops: detection strategies and biosafety issues. Gene 2013; 522:123-32. [PMID: 23566850 DOI: 10.1016/j.gene.2013.03.107] [Citation(s) in RCA: 79] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2012] [Revised: 01/19/2013] [Accepted: 03/10/2013] [Indexed: 11/23/2022]
Abstract
Genetically modified (GM) crops are increasingly gaining acceptance but concurrently consumers' concerns are also increasing. The introduction of Bacillus thuringiensis (Bt) genes into the plants has raised issues related to its risk assessment and biosafety. The International Regulations and the Codex guidelines regulate the biosafety requirements of the GM crops. In addition, these bodies synergize and harmonize the ethical issues related to the release and use of GM products. The labeling of GM crops and their products are mandatory if the genetically modified organism (GMO) content exceeds the levels of a recommended threshold. The new and upcoming GM crops carrying multiple stacked traits likely to be commercialized soon warrant sensitive detection methods both at the DNA and protein levels. Therefore, traceability of the transgene and its protein expression in GM crops is an important issue that needs to be addressed on a priority basis. The advancement in the area of molecular biology has made available several bioanalytical options for the detection of GM crops based on DNA and protein markers. Since the insertion of a gene into the host genome may even cause copy number variation, this may be uncovered using real time PCR. Besides, assessing the exact number of mRNA transcripts of a gene, correlation between the template activity and expressed protein may be established. Here, we present an overview on the production of GM crops, their acceptabilities, detection strategies, biosafety issues and potential impact on society. Further, overall future prospects are also highlighted.
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Panda R, Ariyarathna H, Amnuaycheewa P, Tetteh A, Pramod SN, Taylor SL, Ballmer-Weber BK, Goodman RE. Challenges in testing genetically modified crops for potential increases in endogenous allergen expression for safety. Allergy 2013; 68:142-51. [PMID: 23205714 DOI: 10.1111/all.12076] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/14/2012] [Indexed: 11/29/2022]
Abstract
Premarket, genetically modified (GM) plants are assessed for potential risks of food allergy. The major risk would be transfer of a gene encoding an allergen or protein nearly identical to an allergen into a different food source, which can be assessed by specific serum testing. The potential that a newly expressed protein might become an allergen is evaluated based on resistance to digestion in pepsin and abundance in food fractions. If the modified plant is a common allergenic source (e.g. soybean), regulatory guidelines suggest testing for increases in the expression of endogenous allergens. Some regulators request evaluating endogenous allergens for rarely allergenic plants (e.g. maize and rice). Since allergic individuals must avoid foods containing their allergen (e.g. peanut, soybean, maize, or rice), the relevance of the tests is unclear. Furthermore, no acceptance criteria are established and little is known about the natural variation in allergen concentrations in these crops. Our results demonstrate a 15-fold difference in the major maize allergen, lipid transfer protein between nine varieties, and complex variation in IgE binding to various soybean varieties. We question the value of evaluating endogenous allergens in GM plants unless the intent of the modification was production of a hypoallergenic crop.
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Affiliation(s)
- R Panda
- Food Allergy Research and Resource Program, University of Nebraska, Lincoln, NE 68583, USA
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25
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Almond RJ, Flanagan BF, Antonopoulos A, Haslam SM, Dell A, Kimber I, Dearman RJ. Differential immunogenicity and allergenicity of native and recombinant human lactoferrins: role of glycosylation. Eur J Immunol 2012; 43:170-81. [PMID: 23012214 DOI: 10.1002/eji.201142345] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2011] [Revised: 09/14/2012] [Accepted: 09/21/2012] [Indexed: 11/07/2022]
Abstract
Human native milk lactoferrin (LF) and recombinant forms of lactoferrin (rLF) are available with identical aa sequences, but different glycosylation patterns. Native lactoferrin (NLF) possesses the intrinsic ability to stimulate vigorous IgG and IgE antibody responses in BALB/c mice, whereas recombinant forms (Aspergillus or rice) are 40-fold less immunogenic and 200-fold less allergenic. Such differences are independent of endotoxin or iron content and the glycans do not contribute to epitope formation. A complex glycoprofile is observed for NLF, including sialic acid, fucose, mannose, and Lewis (Le)(x) structures, whereas both rLF species display a simpler glycoprofile rich in mannose. Although Le(x) type sugars play a Th2-type adjuvant role, endogenous expression of Le(x) on NLF did not completely account for the more vigorous IgE responses it provoked. Furthermore, coadminstration of rLF downregulated IgE and upregulated IgG2a antibody responses provoked by NLF, but was without effect on responses to unrelated peanut and chicken egg allergens. These results suggest glycans on rLF impact the induction phase to selectively inhibit IgE responses and that differential glycosylation patterns may impact on antigen uptake, processing and/or presentation, and the balance between Th1 and Th2 responses.
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Affiliation(s)
- Rachael J Almond
- Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom.
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26
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Boschetti E, Righetti PG. Breakfast at Tiffany's? Only with a low-abundance proteomic signature! Electrophoresis 2012; 33:2228-39. [DOI: 10.1002/elps.201200003] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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27
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Almond RJ, Flanagan BF, Kimber I, Dearman RJ. Influence of protein expression system on elicitation of IgE antibody responses: experience with lactoferrin. Toxicology 2012; 301:50-7. [PMID: 22813905 DOI: 10.1016/j.tox.2012.06.018] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2012] [Revised: 06/11/2012] [Accepted: 06/25/2012] [Indexed: 12/21/2022]
Abstract
With increased interest in genetically modified (GM) crop plants there is an important need to understand the properties that contribute to the ability of such novel proteins to provoke immune and/or allergic responses. One characteristic that may be relevant is glycosylation, particularly as novel expression systems (e.g. bacterial to plant) will impact on the protein glycoprofile. The allergenicity (IgE inducing) and immunogenicity (IgG inducing) properties of wild type native human lactoferrin (NLF) from human milk (hm) and neutrophil granules (n) and a recombinant molecule produced in rice (RLF) have been assessed. These forms of lactoferrin have identical amino acid sequences, but different glycosylation patterns: hmNLF and nNLF have complex glycoprofiles including Lewis (Le)(x) structures, with particularly high levels of Le(x) expressed by nNLF, whereas RLF is simpler and rich in mannose residues. Antibody responses induced in BALB/c strain mice by intraperitoneal exposure to the different forms of lactoferrin were characterised. Immunisation with both forms of NLF stimulated substantial IgG and IgE antibody responses. In contrast, the recombinant molecule was considerably less immunogenic and failed to stimulate detectable IgE, irrespective of endotoxin and iron content. The glycans did not contribute to epitope formation, with equivalent IgE and IgG binding recorded for high titre anti-NLF antisera regardless of whether the immunising NLF or the recombinant molecule were used substrates in the analyses. These data demonstrate that differential glycosylation profiles can have a profound impact on protein allergenicity and immunogenicity, with mannose and Le(x) exhibiting opposing effects. These results have clear relevance for characterising the allergenic hazards of novel proteins in GM crops.
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28
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Harper B, McClain S, Ganko EW. Interpreting the biological relevance of bioinformatic analyses with T-DNA sequence for protein allergenicity. Regul Toxicol Pharmacol 2012; 63:426-32. [PMID: 22668749 DOI: 10.1016/j.yrtph.2012.05.014] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2012] [Revised: 05/25/2012] [Accepted: 05/27/2012] [Indexed: 10/28/2022]
Abstract
Global regulatory agencies require bioinformatic sequence analysis as part of their safety evaluation for transgenic crops. Analysis typically focuses on encoded proteins and adjacent endogenous flanking sequences. Recently, regulatory expectations have expanded to include all reading frames of the inserted DNA. The intent is to provide biologically relevant results that can be used in the overall assessment of safety. This paper evaluates the relevance of assessing the allergenic potential of all DNA reading frames found in common food genes using methods considered for the analysis of T-DNA sequences used in transgenic crops. FASTA and BLASTX algorithms were used to compare genes from maize, rice, soybean, cucumber, melon, watermelon, and tomato using international regulatory guidance. Results show that BLASTX for maize yielded 7254 alignments that exceeded allergen similarity thresholds and 210,772 alignments that matched eight or more consecutive amino acids with an allergen; other crops produced similar results. This analysis suggests that each nontransgenic crop has a much greater potential for allergenic risk than what has been observed clinically. We demonstrate that a meaningful safety assessment is unlikely to be provided by using methods with inherently high frequencies of false positive alignments when broadly applied to all reading frames of DNA sequence.
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Affiliation(s)
- B Harper
- Syngenta Crop Protection, LLC, Research Triangle Park, NC 27709, USA.
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