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Tosi M, Ogilvie CM, Spagnoletti FN, Fournier S, Martin RC, Dunfield KE. Cover Crops Modulate the Response of Arbuscular Mycorrhizal Fungi to Water Supply: A Field Study in Corn. PLANTS (BASEL, SWITZERLAND) 2023; 12:plants12051015. [PMID: 36903877 PMCID: PMC10005079 DOI: 10.3390/plants12051015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Revised: 02/14/2023] [Accepted: 02/15/2023] [Indexed: 05/14/2023]
Abstract
Cover crops (CCs) were found to improve soil health by increasing plant diversity and ground cover. They may also improve water supply for cash crops by reducing evaporation and increasing soil water storage capacity. However, their influence on plant-associated microbial communities, including symbiotic arbuscular mycorrhizal fungi (AMF), is less well understood. In a corn field trial, we studied the response of AMF to a four-species winter CC, relative to a no-CC control, as well as to two contrasting water supply levels (i.e., drought and irrigated). We measured AMF colonization of corn roots and used Illumina MiSeq sequencing to study the composition and diversity of soil AMF communities at two depths (i.e., 0-10 and 10-20 cm). In this trial, AMF colonization was high (61-97%), and soil AMF communities were represented by 249 amplicon sequence variants (ASVs) belonging to 5 genera and 33 virtual taxa. Glomus, followed by Claroideoglomus and Diversispora (class Glomeromycetes), were the dominant genera. Our results showed interacting effects between CC treatments and water supply levels for most of the measured variables. The percentage of AMF colonization, arbuscules, and vesicles tended to be lower in irrigated than drought sites, with significant differences detected only under no-CC. Similarly, soil AMF phylogenetic composition was affected by water supply only in the no-CC treatment. Changes in the abundance of individual virtual taxa also showed strong interacting effects between CCs, irrigation, and sometimes soil depth, although CC effects were clearer than irrigation effects. An exception to these interactions was soil AMF evenness, which was higher in CC than no-CC, and higher under drought than irrigation. Soil AMF richness was not affected by the applied treatments. Our results suggest that CCs can affect the structure of soil AMF communities and modulate their response to water availability levels, although soil heterogeneity could influence the final outcome.
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Affiliation(s)
- Micaela Tosi
- School of Environmental Sciences, University of Guelph, 50 Stone Rd. E, Guelph, ON N1G 2W1, Canada
| | - Cameron M. Ogilvie
- Department of Plant Agriculture, University of Guelph, 50 Stone Rd. E, Guelph, ON N1G 2W1, Canada
| | - Federico N. Spagnoletti
- Instituto de Investigaciones en Biociencias Agrícolas y Ambientales (INBA), Consejo Nacional de Investigaciones Científicas (CONICET), Avda. San Martín 4453, Buenos Aires C1417DSE, Argentina
- Cátedra de Microbiología, Facultad de Agronomía, Universidad de Buenos Aires, Avda. San Martín 4453, Buenos Aires C1417DSE, Argentina
| | - Sarah Fournier
- School of Environmental Sciences, University of Guelph, 50 Stone Rd. E, Guelph, ON N1G 2W1, Canada
| | - Ralph C. Martin
- Department of Plant Agriculture, University of Guelph, 50 Stone Rd. E, Guelph, ON N1G 2W1, Canada
| | - Kari E. Dunfield
- School of Environmental Sciences, University of Guelph, 50 Stone Rd. E, Guelph, ON N1G 2W1, Canada
- Correspondence:
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Ducousso-Détrez A, Raveau R, Fontaine J, Hijri M, Lounès-Hadj Sahraoui A. Glomerales Dominate Arbuscular Mycorrhizal Fungal Communities Associated with Spontaneous Plants in Phosphate-Rich Soils of Former Rock Phosphate Mining Sites. Microorganisms 2022; 10:microorganisms10122406. [PMID: 36557659 PMCID: PMC9782746 DOI: 10.3390/microorganisms10122406] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2022] [Revised: 11/25/2022] [Accepted: 11/30/2022] [Indexed: 12/12/2022] Open
Abstract
Arbuscular mycorrhizal fungi (AMF) are key drivers of soil functioning. They interact with multiple soil parameters, notably, phosphorus (P). In this work, AMF communities of native plants grown spontaneously on former mining sites either enriched (P sites) or not enriched with P (nP sites) by mining cuttings of rock phosphate (RP) were studied. No significant differences were observed in the root mycorrhizal rates of the plants when comparing P and nP sites. The assessment of AMF diversity and community structure using Illumina MiSeq metabarcoding and targeting 18S rDNA in roots and rhizospheric soils showed a total of 318 Amplicon Sequence Variants (ASVs) of Glomeromycota phylum. No significant difference in the diversity was found between P and nP sites. Glomeraceae species were largely dominant, formed a fungal core of 26 ASVs, and were persistent and abundant in all sites. In the P soils, eight ASVs were identified by indicator species analysis. A trend towards an increase in Diversisporaceae and Claroideoglomeraceae and a reduction in Paraglomeraceae and Glomeraceae were noticed. These results provide new insights into AMF ecology in former RP mining sites; they document that P concentration is a driver of AMF community structures in soils enriched in RP long term but also suggest an influence of land disturbance, ecosystem self-restoration, and AMF life history strategies as drivers of AMF community profiles.
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Affiliation(s)
- Amandine Ducousso-Détrez
- Unité de Chimie Environnementale et Interactions sur le Vivant (UCEIV), Université du Littoral Côte d’Opale, UR 4492, SFR Condorcet FR CNRS 3417, CEDEX, 62228 Calais, France
- Institut de Recherche en Biologie Végétale (IRBV), 3 AgroBioSciences, Université de Montréal, Montréal, QC H1X 2B2, Canada
| | - Robin Raveau
- INRAE, UMR SAVE, Bordeaux Science Agro, ISVV, 33882 Villenave d’Ornon, France
| | - Joël Fontaine
- Unité de Chimie Environnementale et Interactions sur le Vivant (UCEIV), Université du Littoral Côte d’Opale, UR 4492, SFR Condorcet FR CNRS 3417, CEDEX, 62228 Calais, France
| | - Mohamed Hijri
- Institut de Recherche en Biologie Végétale (IRBV), 3 AgroBioSciences, Université de Montréal, Montréal, QC H1X 2B2, Canada
- African Genome Center, Mohammed VI Polytechnic University (UM6P), Ben Guerir 43150, Morocco
| | - Anissa Lounès-Hadj Sahraoui
- Unité de Chimie Environnementale et Interactions sur le Vivant (UCEIV), Université du Littoral Côte d’Opale, UR 4492, SFR Condorcet FR CNRS 3417, CEDEX, 62228 Calais, France
- Correspondence:
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Baril X, Durand AA, Srei N, Lamothe S, Provost C, Martineau C, Dunfield K, Constant P. The biological sink of atmospheric H 2 is more sensitive to spatial variation of microbial diversity than N 2O and CO 2 emissions in a winter cover crop field trial. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 821:153420. [PMID: 35092770 DOI: 10.1016/j.scitotenv.2022.153420] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2021] [Revised: 01/21/2022] [Accepted: 01/21/2022] [Indexed: 06/14/2023]
Abstract
The integration of winter cover crop (WCC) in culture rotations promotes multiple ecosystem services, but concomitant microbial diversity and functioning responses in soil have received less attention. A field trial was established to test the hypothesis that enhanced crop diversity with the integration of WCC in a conventional maize-soy rotation promotes microbial diversity and the biological sink of H2 in soil, while reducing N2O emissions to the atmosphere. Vicia villosa (hairy vetch), Avena sativa (oat), and Raphanus sativus (Daikon radish) were cultivated alone or in combinations and flux measurements were performed throughout two subsequent growing seasons. Soil acted as a net sink for H2 and as a net source for CO2 and N2O. CO2 flux was the most sensitive to WCC whereas a significant spatial variation was observed for H2 flux with soil uptake rates observed in the most productive area two-fold greater than the baseline level. Sequencing and quantification of taxonomic and functional genes were integrated to explain variation in trace gas fluxes with compositional changes in soil microbial communities. Fungal communities were the most sensitive to WCC, but neither community abundance nor beta diversity were found to be indicative of fluxes. The alpha diversity of taxonomic and functional genes, expressed as the number of effective species, was integrated into composite variables extracted from multivariate analyses. Only the composite variable computed with the inverse Simpson's index displayed a reproducible pattern throughout both growing seasons, with functional genes and bacterial 16S rRNA gene defining the two most contrasting gradients. The composite variable was decoupled from WCC treatment and explained 19-20% spatial variation of H2 fluxes. The coupling of composite alpha diversity metrics derived from multiple genes with soil processes warrants further investigations to implement novel indicators of soil health in response to changing management practices at the local scale.
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Affiliation(s)
- Xavier Baril
- Institut national de la recherche scientifique, Centre Armand-Frappier Santé Biotechnologie, 531 boulevard des Prairies, Laval, Québec H7V 1B7, Canada
| | - Audrey-Anne Durand
- Institut national de la recherche scientifique, Centre Armand-Frappier Santé Biotechnologie, 531 boulevard des Prairies, Laval, Québec H7V 1B7, Canada
| | - Narin Srei
- Institut national de la recherche scientifique, Centre Armand-Frappier Santé Biotechnologie, 531 boulevard des Prairies, Laval, Québec H7V 1B7, Canada
| | - Steve Lamothe
- Centre de recherche agroalimentaire de Mirabel, 9850, rue de Belle-Rivière, Mirabel, Québec J7N 2X8, Canada
| | - Caroline Provost
- Centre de recherche agroalimentaire de Mirabel, 9850, rue de Belle-Rivière, Mirabel, Québec J7N 2X8, Canada
| | - Christine Martineau
- Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre, Sainte-Foy, Québec G1V 4C7, Canada
| | - Kari Dunfield
- School of Environmental Sciences, University of Guelph, Guelph, Ontario N1G 2W1, Canada
| | - Philippe Constant
- Institut national de la recherche scientifique, Centre Armand-Frappier Santé Biotechnologie, 531 boulevard des Prairies, Laval, Québec H7V 1B7, Canada.
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Cloutier ML, Murrell E, Barbercheck M, Kaye J, Finney D, García-González I, Bruns MA. Fungal community shifts in soils with varied cover crop treatments and edaphic properties. Sci Rep 2020; 10:6198. [PMID: 32277120 PMCID: PMC7148350 DOI: 10.1038/s41598-020-63173-7] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Accepted: 03/09/2020] [Indexed: 12/17/2022] Open
Abstract
Cover cropping is proposed to enhance soil microbial diversity and activity, with cover crop type affecting microbial groups in different ways. We compared fungal community compositions of bulk soils differing by cover crop treatment, season, and edaphic properties in the third year of an organic, conventionally tilled rotation of corn-soybean-wheat planted with winter cover crops. We used Illumina amplicon sequencing fungal assemblages to evaluate effects of nine treatments, each replicated four times, consisting of six single winter cover crop species, a three-species mixture, a six-species mixture, and fallow. Alpha-diversity of fungal communities was not affected by cover crop species identity, function, or diversity. Sampling season influenced community composition as well as genus-level abundances of arbuscular mycorrhizal (AM) fungi. Cover crop mixtures, specifically the three-species mixture, had distinct AM fungal community compositions, while cereal rye and forage radish monocultures had unique Core OTU compositions. Soil texture, pH, permanganate oxidizable carbon, and chemical properties including Cu, and P were important variables in models of fungal OTU distributions across groupings. These results showed how fungal composition and potential functions were shaped by cover crop treatment as well as soil heterogeneity.
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Affiliation(s)
- Mara L Cloutier
- Department of Ecosystem Science and Management, Pennsylvania State University, University Park, 16801, PA, USA.
- Biogeochemistry Dual Title PhD Program-Pennsylvania State University, University Park, 16801, PA, USA.
| | | | - Mary Barbercheck
- Department of Entomology, Pennsylvania State University, University Park, 16801, PA, USA
| | - Jason Kaye
- Department of Ecosystem Science and Management, Pennsylvania State University, University Park, 16801, PA, USA
- Biogeochemistry Dual Title PhD Program-Pennsylvania State University, University Park, 16801, PA, USA
| | - Denise Finney
- Department of Biology, Ursinus College, Collegeville, 19426, PA, USA
| | - Irene García-González
- Departamento de Producción Agraria, Universidad Politécnica de Madrid, Avda. Complutense s/n, 28040, Madrid, Spain
| | - Mary Ann Bruns
- Department of Ecosystem Science and Management, Pennsylvania State University, University Park, 16801, PA, USA
- Biogeochemistry Dual Title PhD Program-Pennsylvania State University, University Park, 16801, PA, USA
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Higo M, Azuma M, Kamiyoshihara Y, Kanda A, Tatewaki Y, Isobe K. Impact of Phosphorus Fertilization on Tomato Growth and Arbuscular Mycorrhizal Fungal Communities. Microorganisms 2020; 8:E178. [PMID: 31991824 PMCID: PMC7074694 DOI: 10.3390/microorganisms8020178] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2019] [Revised: 01/22/2020] [Accepted: 01/23/2020] [Indexed: 11/16/2022] Open
Abstract
Understanding the impact of phosphorus (P) addition on arbuscular mycorrhizal fungi (AMF) is crucial to understanding tomato (Solanum lycopersicum L.) P nutrition. However, it remains unknown how P fertilization is associated with the structure of AMF communities on tomato plants. Thus, we investigated whether levels of P fertilizer interacted with the colonization and structure of AMF in tomato roots in a field trial. In this study, we established three different amounts of P fertilizer treatments (0 kg ha-1, 50 kg ha-1, and 100 kg ha-1). We investigated AMF root colonization and community structure, as well as plant growth in tomatoes at seven weeks following transplantation. The structure of the AMF communities in the roots of tomato were determined by MiSeq amplicon sequencing. As expected, P fertilizer input enhanced the P uptake and plant biomass. In contrast, the P fertilizer level did not affect the AMF root colonization and diversity or the structure of the AMF communities in the tomato. However, we found a negative correlation between AMF colonization and richness in the roots of the tomato plants. Therefore, we need to investigate whether and how AMF communities and P fertilization develop more effective P management for tomato plants.
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Affiliation(s)
- Masao Higo
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, 1866 Kameino, Fujisawa, Kanagawa 252-0880, Japan; (M.A.); (Y.K.); (A.K.); (Y.T.); (K.I.)
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6
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Higo M, Kang DJ, Isobe K. First report of community dynamics of arbuscular mycorrhizal fungi in radiocesium degradation lands after the Fukushima-Daiichi Nuclear disaster in Japan. Sci Rep 2019; 9:8240. [PMID: 31160630 PMCID: PMC6546702 DOI: 10.1038/s41598-019-44665-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2018] [Accepted: 05/22/2019] [Indexed: 11/10/2022] Open
Abstract
Arbuscular mycorrhizal fungi (AMF) can be beneficial for improving restoration of radioactive-cesium (137Cs)-contaminated soils through soil remediation. However, there has been no information on species diversity and the composition of AMF communities in 137Cs-contaminated soil after the Fukushima-Daiichi Nuclear Power Plant (NPP) disaster. We examined the community dynamics of indigenous AMF colonizing roots of napiergrass (Pennisetum purpureum) in two different 137Cs-contaminated land-use fields (grassland and paddy field) by an Illumina MiSeq sequencing investigation within a 30-km radius around the Fukushima-Daiichi NPP in 2013 (sampling year 1) and 2014 (sampling year 2). We found nine AMF families, including Glomeraceae, Gigasporaceae, Paraglomeraceae, Claroideoglomeraceae, Acaulosporaceae, Archeosporaceae, Ambisporaceae, Diversisporaceae and uncultured Glomeromycotina in roots. Glomeraceae was the most abundant in both grassland and paddy field, followed by Paraglomeraceae. The diversity of AMF in grassland and paddy field was higher in 2014 than in 2013. Furthermore, the AMF community structure was impacted by sampling year and land-use type. The AMF community structures colonizing napiergrass roots were also significantly impacted by land-use type and year throughout the 2-year investigation. To our knowledge, our results are the first report to reveal the community dynamics of indigenous AMF in the 137Cs-contaminated fields around NPP.
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Affiliation(s)
- Masao Higo
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Kameino 1866, 252-0880, Fujisawa, Kanagawa, Japan.
| | - Dong-Jin Kang
- Teaching and Research Center for Bio-coexistence, Faculty of Agriculture and Life Science, Hirosaki University, 037-0202, Gosyogawara, Aomori, Japan
| | - Katsunori Isobe
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Kameino 1866, 252-0880, Fujisawa, Kanagawa, Japan
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Hontoria C, García-González I, Quemada M, Roldán A, Alguacil MM. The cover crop determines the AMF community composition in soil and in roots of maize after a ten-year continuous crop rotation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 660:913-922. [PMID: 30743976 DOI: 10.1016/j.scitotenv.2019.01.095] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2018] [Revised: 01/09/2019] [Accepted: 01/09/2019] [Indexed: 05/06/2023]
Abstract
Intensive agricultural practices are responsible for soil biological degradation. By stimulating indigenous arbuscular mycorrhizal fungi (AMF), cover cropping enhances soil health and promotes agroecosystem sustainability. Still, the legacy effects of cover crops (CCs) and the major factors driving the AM fungal community are not well known; neither is the influence of the specific CC. This work describes a field experiment established in Central Spain to test the effect of replacing winter fallow by barley (Hordeum vulgare L.) or vetch (Vicia sativa L.) during the intercropping of maize (Zea mays L.). We examined the community composition of the AMF in the roots and rhizosphere soil associated with the subsequent cash crop after 10 years of cover cropping, using Illumina technology. The multivariate analysis showed that the AMF communities under the barley treatment differed significantly from those under fallow, whereas no legacy effect of the vetch CC was detected. Soil organic carbon, electrical conductivity, pH, Ca and microbial biomass carbon were identified as major factors shaping soil AMF communities. Specific AMF taxa were found to play a role in plant uptake of P, Fe, Zn, Mn, and Cd, which may shed light on the functionality of these taxa. In our conditions, the use of barley as a winter CC appears to be an appropriate choice with respect to promotion of AMF populations and biological activity in agricultural soils with intercropping systems. However, more research on CC species and their legacy effect on the microbial community composition and functionality are needed to guide decisions in knowledge-based agriculture.
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Affiliation(s)
- C Hontoria
- Department of Agricultural Production, Universidad Politécnica de Madrid, Avda. Puerta de Hierro, n° 2-4, 28040 Madrid, Spain
| | - I García-González
- Department of Agricultural Production, Universidad Politécnica de Madrid, Avda. Puerta de Hierro, n° 2-4, 28040 Madrid, Spain
| | - M Quemada
- Department of Agricultural Production, Universidad Politécnica de Madrid, Avda. Puerta de Hierro, n° 2-4, 28040 Madrid, Spain; Centro de Estudios e Investigación para la Gestión de Riesgos Agrarios y Medioambientales, CEIGRAM-UPM, Senda del Rey 13, 28040 Madrid, Spain
| | - A Roldán
- Department of Soil and Water Conservation, CSIC-Centro de Edafología y Biología Aplicada del Segura, P.O. Box 164, Campus de Espinardo, 30100 Murcia, Spain
| | - M M Alguacil
- Soil Microbiology and Symbiotic Systems Department, Estación Experimental del Zaidín, CSIC, Profesor Albareda 1, Granada 18008, Spain; Department of Soil and Water Conservation, CSIC-Centro de Edafología y Biología Aplicada del Segura, P.O. Box 164, Campus de Espinardo, 30100 Murcia, Spain.
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Higo M, Tatewaki Y, Gunji K, Kaseda A, Isobe K. Cover cropping can be a stronger determinant than host crop identity for arbuscular mycorrhizal fungal communities colonizing maize and soybean. PeerJ 2019; 7:e6403. [PMID: 30775179 PMCID: PMC6369830 DOI: 10.7717/peerj.6403] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2018] [Accepted: 01/07/2019] [Indexed: 11/20/2022] Open
Abstract
Background Understanding the role of communities of arbuscular mycorrhizal fungi (AMF) in agricultural systems is imperative for enhancing crop production. The key variables influencing change in AMF communities are the type of cover crop species or the type of subsequent host crop species. However, how maize and soybean performance is related to the diversity of AMF communities in cover cropping systems remains unclear. We therefore investigated which cover cropping or host identity is the most important factor in shaping AMF community structure in subsequent crop roots using an Illumina Miseq platform amplicon sequencing. Methods In this study, we established three cover crop systems (Italian ryegrass, hairy vetch, and brown mustard) or bare fallow prior to planting maize and soybean as cash crops. After cover cropping, we divided the cover crop experimental plots into two subsequent crop plots (maize and soybean) to understand which cover cropping or host crop identity is an important factor for determining the AMF communities and diversity both in maize and soybeans. Results We found that most of the operational taxonomic units (OTUs) in root samples were common in both maize and soybean, and the proportion of common generalists in this experiment for maize and soybean roots was 79.5% according to the multinomial species classification method (CLAM test). The proportion of OTUs specifically detected in only maize and soybean was 9.6% and 10.8%, respectively. Additionally, the cover cropping noticeably altered the AMF community structure in the maize and soybean roots. However, the differentiation of AMF communities between maize and soybean was not significantly different. Discussion Our results suggest cover cropping prior to planting maize and soybean may be a strong factor for shaping AMF community structure in subsequent maize and soybean roots rather than two host crop identities. Additionally, we could not determine the suitable rotational combination for cover crops and subsequent maize and soybean crops to improve the diversity of the AMF communities in their roots. However, our findings may have implications for understanding suitable rotational combinations between cover crops and subsequent cash crops and further research should investigate in-depth the benefit of AMF on cash crop performances in cover crop rotational systems.
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Affiliation(s)
- Masao Higo
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa, Japan
| | - Yuya Tatewaki
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa, Japan
| | - Kento Gunji
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa, Japan
| | - Akari Kaseda
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa, Japan
| | - Katsunori Isobe
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa, Japan
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9
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Mycorrhizal fungal community structure in tropical humid soils under fallow and cropping conditions. Sci Rep 2018; 8:17061. [PMID: 30459316 PMCID: PMC6244078 DOI: 10.1038/s41598-018-34736-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2017] [Accepted: 10/23/2018] [Indexed: 11/08/2022] Open
Abstract
Little is known to what extent soil biota, in particular, the mycorrhizae are altered through different fallow durations/types in tropical soils. We found that soil-N, -C, -Al, -K and -Ca contents significantly differed due to the fallow durations/types. Subsequently, the effects of fallow types and soil depths on the diversity, species richness and community structure of arbuscular mycorrhizal (AM) fungi were examined. A higher AM species richness was identified in the cropping than in forest fallow fields, suggesting a positive cropping feedback on the AM community composition. Distribution of the AM species was positively related to soil properties, specifically soil-pH, and soil-Pi, -Ca and -Mg contents. The soil properties conjointly accounted for 78.5% of explained variation in the AM community composition, signifying that the main factors altering the community structure under different fallow and cropping systems were the soil properties. Among the soil chemical characteristics, the soil-pH disclosed a significant explained variation in the AM community composition in the topsoil layer under the short fallow. Structural modeling equation to understand multiple predictive pathways that connect soil properties, fallow practices and AM community structures indicated that soil-C, -N and -Ca contents were highlighted as important factors influencing the AM community compositions.
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Campos P, Borie F, Cornejo P, López-Ráez JA, López-García Á, Seguel A. Phosphorus Acquisition Efficiency Related to Root Traits: Is Mycorrhizal Symbiosis a Key Factor to Wheat and Barley Cropping? FRONTIERS IN PLANT SCIENCE 2018; 9:752. [PMID: 29922321 PMCID: PMC5996197 DOI: 10.3389/fpls.2018.00752] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2018] [Accepted: 05/16/2018] [Indexed: 05/20/2023]
Abstract
Wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.) are major crops cultivated around the world, thus playing a crucial role on human diet. Remarkably, the growing human population requires a significant increase in agricultural production in order to feed everybody. In this context, phosphorus (P) management is a key factor as it is component of organic molecules such as nucleic acids, ATP and phospholipids, and it is the most abundant macronutrient in biomass after nitrogen (N), although being one of the scarcest elements in the lithosphere. In general, P fertilization has low efficiency, as only a fraction of the applied P is acquired by roots, leaving a substantial amount to be accumulated in soil as not readily available P. Breeding for P-efficient cultivars is a relatively low cost alternative and can be done through two mechanisms: i) improving P use efficiency (PUE), and/or ii) P acquisition efficiency (PAE). PUE is related to the internal allocation/mobilization of P, and is usually represented by the amount of P accumulated per biomass. PAE relies on roots ability to acquire P from the soil, and is commonly expressed as the relative difference of P acquired under low and high P availability conditions. In this review, plant adaptations related to improved PAE are described, with emphasis on arbuscular mycorrhizal (AM) symbiosis, which is generally accepted to enhance plant P acquisition. A state of the art (1980-2018) of AM growth responses and P uptake in wheat and barley is made to discuss about the commonly accepted growth promoting effect and P increased uptake by AM fungi and the contrasting evidence about the generally accepted lack of positive responses in both plant species. Finally, the mechanisms by which AM symbiosis can affect wheat and barley PAE are discussed, highlighting the importance of considering AM functional diversity on future studies and the necessity to improve PAE definition by considering the carbon trading between all the directly related PAE traits and its return to the host plant.
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Affiliation(s)
- Pedro Campos
- Scientific and Technological Bioresource Nucleus BIOREN-UFRO, Universidad de La Frontera, Temuco, Chile
- Department of Soil Microbiology and Symbiotic Systems, Estación Experimental del Zaidín-Consejo Superior de Investigaciones Científicas, Granada, Spain
| | - Fernando Borie
- Scientific and Technological Bioresource Nucleus BIOREN-UFRO, Universidad de La Frontera, Temuco, Chile
- Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Temuco, Chile
| | - Pablo Cornejo
- Scientific and Technological Bioresource Nucleus BIOREN-UFRO, Universidad de La Frontera, Temuco, Chile
- Departamento de Ciencias Químicas y Recursos Naturales, Universidad de La Frontera, Temuco, Chile
| | - Juan A. López-Ráez
- Department of Soil Microbiology and Symbiotic Systems, Estación Experimental del Zaidín-Consejo Superior de Investigaciones Científicas, Granada, Spain
| | - Álvaro López-García
- Section Ecology and Evolution, Biological Institute, University of Copenhagen, Copenhagen, Denmark
| | - Alex Seguel
- Scientific and Technological Bioresource Nucleus BIOREN-UFRO, Universidad de La Frontera, Temuco, Chile
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Higo M, Sato R, Serizawa A, Takahashi Y, Gunji K, Tatewaki Y, Isobe K. Can phosphorus application and cover cropping alter arbuscular mycorrhizal fungal communities and soybean performance after a five-year phosphorus-unfertilized crop rotational system? PeerJ 2018; 6:e4606. [PMID: 29682413 PMCID: PMC5910793 DOI: 10.7717/peerj.4606] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2017] [Accepted: 03/22/2018] [Indexed: 11/20/2022] Open
Abstract
Background Understanding diversity of arbuscular mycorrhizal fungi (AMF) is important for optimizing their role for phosphorus (P) nutrition of soybeans (Glycine max (L.) Merr.) in P-limited soils. However, it is not clear how soybean growth and P nutrition is related to AMF colonization and diversity of AMF communities in a continuous P-unfertilized cover cropping system. Thus, we investigated the impact of P-application and cover cropping on the interaction among AMF colonization, AMF diversity in soybean roots, soybean growth and P nutrition under a five-year P-unfertilized crop rotation. Methods In this study, we established three cover crop systems (wheat, red clover and oilseed rape) or bare fallow in rotation with soybean. The P-application rates before the seeding of soybeans were 52.5 and 157.5 kg ha-1 in 2014 and 2015, respectively. We measured AMF colonization in soybean roots, soybean growth parameters such as aboveground plant biomass, P uptake at the flowering stage and grain yields at the maturity stage in both years. AMF community structure in soybean roots was characterized by specific amplification of small subunit rDNA. Results The increase in the root colonization at the flowering stage was small as a result of P-application. Cover cropping did not affect the aboveground biomass and P uptake of soybean in both years, but the P-application had positive effects on the soybean performance such as plant P uptake, biomass and grain yield in 2015. AMF communities colonizing soybean roots were also significantly influenced by P-application throughout the two years. Moreover, the diversity of AMF communities in roots was significantly influenced by P-application and cover cropping in both years, and was positively correlated with the soybean biomass, P uptake and grain yield throughout the two years. Discussion Our results indicated that P-application rather than cover cropping may be a key factor for improving soybean growth performance with respect to AMF diversity in P-limited cover cropping systems. Additionally, AMF diversity in roots can potentially contribute to soybean P nutrition even in the P-fertilized cover crop rotational system. Therefore, further investigation into the interaction of AMF diversity, P-application and cover cropping is required for the development of more effective P management practices on soybean growth performance.
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Affiliation(s)
- Masao Higo
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Kanagawa, Japan
| | - Ryohei Sato
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Kanagawa, Japan
| | - Ayu Serizawa
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Kanagawa, Japan
| | - Yuichi Takahashi
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Kanagawa, Japan
| | - Kento Gunji
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Kanagawa, Japan
| | - Yuya Tatewaki
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Kanagawa, Japan
| | - Katsunori Isobe
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Kanagawa, Japan
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Higo M, Takahashi Y, Gunji K, Isobe K. How are arbuscular mycorrhizal associations related to maize growth performance during short-term cover crop rotation? JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2018; 98:1388-1396. [PMID: 28759105 DOI: 10.1002/jsfa.8606] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2017] [Revised: 07/22/2017] [Accepted: 07/27/2017] [Indexed: 06/07/2023]
Abstract
BACKGROUND Better cover crop management options aiming to maximize the benefits of arbuscular mycorrhizal fungi (AMF) to subsequent crops are largely unknown. We investigated the impact of cover crop management methods on maize growth performance and assemblages of AMF colonizing maize roots in a field trial. The cover crop treatments comprised Italian ryegrass, wheat, brown mustard and fallow in rotation with maize. RESULTS The diversity of AMF communities among cover crops used for maize management was significantly influenced by the cover crop and time course. Cover crops did not affect grain yield and aboveground biomass of subsequent maize but affected early growth. A structural equation model indicated that the root colonization, AMF diversity and maize phosphorus uptake had direct strong positive effects on yield performance. CONCLUSION AMF variables and maize performance were related directly or indirectly to maize grain yield, whereas root colonization had a positive effect on maize performance. AMF may be an essential factor that determines the success of cover crop rotational systems. Encouraging AMF associations can potentially benefit cover cropping systems. Therefore, it is imperative to consider AMF associations and crop phenology when making management decisions. © 2017 Society of Chemical Industry.
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Affiliation(s)
- Masao Higo
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa, Japan
| | - Yuichi Takahashi
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa, Japan
| | - Kento Gunji
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa, Japan
| | - Katsunori Isobe
- Department of Agricultural Bioscience, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa, Japan
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Dean SL, Billingsley Tobias T, Phippen WB, Clayton AW, Gruver J, Porras-Alfaro A. A study of Glycine max (soybean) fungal communities under different agricultural practices. ACTA ACUST UNITED AC 2017. [DOI: 10.1016/j.plgene.2016.11.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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