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Wang S, Liu J, Liu Y, Tian C. Application of rhizobium inoculation in regulating heavy metals in legumes: A meta-analysis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 945:173923. [PMID: 38880144 DOI: 10.1016/j.scitotenv.2024.173923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Revised: 05/21/2024] [Accepted: 06/09/2024] [Indexed: 06/18/2024]
Abstract
Rhizobium inoculation has been widely applied to alleviate heavy metal (HM) stress in legumes grown in contaminated soils, but it has generated inconsistent results with regard to HM accumulation in plant tissues. Here, we conducted a meta-analysis to assess the performance of Rhizobium inoculation for regulating HM in legumes and reveal the general influencing factors and processes. The meta-analysis showed that Rhizobium inoculation in legumes primarily increased the total HM uptake by stimulating plant biomass growth rather than HM phytoavailability. Inoculation had no significant effect on the average shoot HM concentration (p > 0.05); however, it significantly increased root HM uptake by 61 % and root HM concentration by 7 % (p < 0.05), indicating safe agricultural production while facilitating HM phytostabilisation. Inoculation decreased shoot HM concentrations and increased root HM uptake in Vicia, Medicago and Glycine, whereas it increased shoot HM concentrations in Sulla, Cicer and Vigna. The effects of inoculation on shoot biomass were suppressed by nitrogen fertiliser and native microorganisms, and the effect on shoot HM concentration was enhanced by high soil pH, organic matter content, and phosphorous content. Inoculation-boosted shoot nutrient concentration was positively correlated with increased shoot biomass, whereas the changes in pH and organic matter content were insufficient to significantly affect accumulation outcomes. Nitrogen content changes in the soil were positively correlated with changes in root HM concentration and uptake, whereas nitrogen translocation changes in the tissues were positively correlated with changes in HM translocation. Phosphorus solubilisation could improve HM phytoavailability at the expense of slight biomass promotion. These results suggest that the diverse growth-promoting characteristics of Rhizobia influence the trade-off between biomass-HM phytoavailability and HM translocation, impacting HM accumulation outcomes. Our findings can assist in optimising the utilisation of legume-Rhizobium systems in HM-contaminated soils.
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Affiliation(s)
- Shiqi Wang
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences (CAS), Urumqi 830011, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jinbiao Liu
- Agricultural College, Heilongjiang Bayi Agricultural University, Daqing 163317, China
| | - Yalan Liu
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences (CAS), Urumqi 830011, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Changyan Tian
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences (CAS), Urumqi 830011, China.
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Garneau L, Beauregard PB, Roy S. Deciphering the role of non- Frankia nodular endophytes in alder through in vitro and genomic characterization. Can J Microbiol 2023; 69:72-87. [PMID: 36288604 DOI: 10.1139/cjm-2022-0073] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Endophytic bacterial populations are well-positioned to provide benefits to their host plants such as nutrient acquisition and plant hormone level manipulation. Actinorhizal plants such as alders are well known for their microbial symbioses that allow them to colonize harsh environments whether natural or anthropized. Although the nitrogen-fixing actinobacterium Frankia sp. is the main endophyte found in alder root nodules, other bacterial genera, whose roles remain poorly defined, inhabit this niche. In this study, we isolated a diverse panel of non-Frankia nodular endophytes (NFNE). Some NFNE were isolated from alders grown from surface-sterilized seeds and maintained in sterile conditions, suggesting these may have been seed-borne. In vitro testing of 24 NFNE revealed some possessed putative plant growth promotion traits. Their genomes were also sequenced to identify genes related to plant growth promotion traits. This study highlights the complexity of the alder nodular microbial community. It paves the way for further understanding of the biology of nodules and could help improve land reclamation practices that involve alders.
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Affiliation(s)
- Louis Garneau
- Centre SÈVE, Département de biologie, Faculté des Sciences, Université de Sherbrooke, 2500 boulevard de l'Université, Sherbrooke, Québec, Canada, J1K 2R1
| | - Pascale B Beauregard
- Centre SÈVE, Département de biologie, Faculté des Sciences, Université de Sherbrooke, 2500 boulevard de l'Université, Sherbrooke, Québec, Canada, J1K 2R1
| | - Sébastien Roy
- Centre SÈVE, Département de biologie, Faculté des Sciences, Université de Sherbrooke, 2500 boulevard de l'Université, Sherbrooke, Québec, Canada, J1K 2R1
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Zharkova EK, Vankova AA, Selitskaya OV, Malankina EL, Drenova NV, Zhelezova AD, Khlyustov VK, Belopukhov SL, Zhevnerov AV, Sviridova LA, Fomina TN, Kozlov AV. Bacterial Communities of Lamiacea L. Medicinal Plants: Structural Features and Rhizosphere Effect. Microorganisms 2023; 11:microorganisms11010197. [PMID: 36677489 PMCID: PMC9865931 DOI: 10.3390/microorganisms11010197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2022] [Revised: 12/11/2022] [Accepted: 01/07/2023] [Indexed: 01/14/2023] Open
Abstract
Bacterial communities associated with medicinal plants are an essential part of ecosystems. The rhizosphere effect is rather important in the cultivation process. The purpose of the study was to analyze the rhizosphere effect of oregano (Origanum vulgare L.), peppermint (Mentha piperita L.), thyme (Thymus vulgaris L.), creeping thyme (Thymus serpillum L.) and sage (Salvia officinalis L.). To estimate the quantity of 16S bacteria ribosomal genes, qPCR assays were used. To compare bacterial communities' structure of medicinal plants rhizosphere with bulk soil high-throughput sequencing of the 16S rRNA targeting variable regions V3-V4 of bacteria was carried out. The highest bacterial abundance was associated with T. vulgaris L., M. piperita L. and S. officinalis L., and the lowest was associated with the O. vulgare L. rhizosphere. Phylum Actinobacteriota was predominant in all rhizosphere samples. The maximum bacterial α-diversity was found in S. officinalis L. rhizosphere. According to bacterial β-diversity calculated by the Bray-Curtis metric, T. vulgaris L. root zone significantly differed from bulk soil. The rhizosphere effect was positive to the Myxococcota, Bacteroidota, Verrucomicrobiota, Proteobacteria and Gemmatimonadota.
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Affiliation(s)
- Ekaterina K. Zharkova
- Russian State Agrarian University-Moscow Timiryazev Agricultural Academy, Moscow 127434, Russia
- Correspondence:
| | - Anna A. Vankova
- Russian State Agrarian University-Moscow Timiryazev Agricultural Academy, Moscow 127434, Russia
| | - Olga V. Selitskaya
- Russian State Agrarian University-Moscow Timiryazev Agricultural Academy, Moscow 127434, Russia
| | - Elena L. Malankina
- Russian State Agrarian University-Moscow Timiryazev Agricultural Academy, Moscow 127434, Russia
| | - Natalya V. Drenova
- All-Russian Plant Quarantine Center, Pogranichnaya St. 32, Bykovo, Ramensky District, Moscow 140150, Russia
| | - Alena D. Zhelezova
- V.V. Dokuchaev Soil Science Institute, Pyzhyovskiy Lane 7, Building 2, Moscow 119017, Russia
| | - Vitaliy K. Khlyustov
- Russian State Agrarian University-Moscow Timiryazev Agricultural Academy, Moscow 127434, Russia
| | - Sergey L. Belopukhov
- Russian State Agrarian University-Moscow Timiryazev Agricultural Academy, Moscow 127434, Russia
| | - Aleksey V. Zhevnerov
- Russian State Agrarian University-Moscow Timiryazev Agricultural Academy, Moscow 127434, Russia
| | - Ludmila A. Sviridova
- Russian State Agrarian University-Moscow Timiryazev Agricultural Academy, Moscow 127434, Russia
| | - Tatiana N. Fomina
- Russian State Agrarian University-Moscow Timiryazev Agricultural Academy, Moscow 127434, Russia
| | - Andrey V. Kozlov
- Russian State Agrarian University-Moscow Timiryazev Agricultural Academy, Moscow 127434, Russia
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Sharma JK, Kumar N, Singh NP, Santal AR. Phytoremediation technologies and their mechanism for removal of heavy metal from contaminated soil: An approach for a sustainable environment. FRONTIERS IN PLANT SCIENCE 2023; 14:1076876. [PMID: 36778693 PMCID: PMC9911669 DOI: 10.3389/fpls.2023.1076876] [Citation(s) in RCA: 48] [Impact Index Per Article: 48.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2022] [Accepted: 01/06/2023] [Indexed: 05/14/2023]
Abstract
The contamination of soils with heavy metals and its associated hazardous effects are a thrust area of today's research. Rapid industrialization, emissions from automobiles, agricultural inputs, improper disposal of waste, etc., are the major causes of soil contamination with heavy metals. These contaminants not only contaminate soil but also groundwater, reducing agricultural land and hence food quality. These contaminants enter the food chain and have a severe effect on human health. It is important to remove these contaminants from the soil. Various economic and ecological strategies are required to restore the soils contaminated with heavy metals. Phytoremediation is an emerging technology that is non-invasive, cost-effective, and aesthetically pleasing. Many metal-binding proteins (MBPs) of the plants are significantly involved in the phytoremediation of heavy metals; the MBPs include metallothioneins; phytochelatins; metalloenzymes; metal-activated enzymes; and many metal storage proteins, carrier proteins, and channel proteins. Plants are genetically modified to enhance their phytoremediation capacity. In Arabidopsis, the expression of the mercuric ion-binding protein in Bacillus megaterium improves the metal accumulation capacity. The phytoremediation efficiency of plants is also enhanced when assisted with microorganisms, biochar, and/or chemicals. Removing heavy metals from agricultural land without challenging food security is almost impossible. As a result, crop selections with the ability to sequester heavy metals and provide food security are in high demand. This paper summarizes the role of plant proteins and plant-microbe interaction in remediating soils contaminated with heavy metals. Biotechnological approaches or genetic engineering can also be used to tackle the problem of heavy metal contamination.
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Affiliation(s)
| | - Nitish Kumar
- Department of Biotechnology, Central University of South Bihar, Gaya, Bihar, India
| | - N. P. Singh
- Centre for Biotechnology, M. D. University, Rohtak, India
- *Correspondence: Anita Rani Santal, ; N. P. Singh,
| | - Anita Rani Santal
- Department of Microbiology, M. D. University, Rohtak, India
- *Correspondence: Anita Rani Santal, ; N. P. Singh,
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Naing AH, Maung TT, Kim CK. The ACC deaminase-producing plant growth-promoting bacteria: Influences of bacterial strains and ACC deaminase activities in plant tolerance to abiotic stress. PHYSIOLOGIA PLANTARUM 2021; 173:1992-2012. [PMID: 34487352 DOI: 10.1111/ppl.13545] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2021] [Revised: 08/17/2021] [Accepted: 08/27/2021] [Indexed: 05/02/2023]
Abstract
Global climate change results in frequent occurrences and/or long durations of abiotic stress. Field grown plants are affected by abiotic stress, and they modulate ethylene in response to abiotic stress exposure and use it as a signaling molecule in stress tolerance mechanisms. However, frequent occurrences and/or long durations of stress conditions can cause plants to induce ethylene levels higher than their thresholds, resulting in a reduction of plant growth and crop productivity. The use of plant growth-promoting bacteria (PGPB) that produce 1-aminocyclopropane-1-carboxylate (ACC) deaminase has increased in various plant species to ameliorate the deleterious effects of stress-induced ethylene and promote plant growth despite abiotic stress conditions. Unfortunately, there are restrictions that limit the use of ACC deaminase-producing PGPB to protect plants from abiotic stresses. This review describes how abiotic stress induces ethylene and how stress-induced ethylene adversely affects plant growth. In addition, this review emphasizes the importance of the compatibility of PGPB strains and specific host plants and ACC deaminase activities in the reduction of stress ethylene and the promotion of plant growth, based on the research published in the last 10 years. Moreover, due to the restrictions in PGPB use, this review highlights the potential generation of transgenic plants expressing the AcdS gene that encodes the ACC deaminase enzyme as a substitute for PGPB in the future to support and uplift agricultural sustainability and food security globally.
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Affiliation(s)
- Aung Htay Naing
- Department of Horticulture, Kyungpook National University, Daegu, Korea
| | - The-Thiri Maung
- Department of Food Science and Technology, Kongju National University, Yesan, Korea
| | - Chang Kil Kim
- Department of Horticulture, Kyungpook National University, Daegu, Korea
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Kumawat KC, Sharma P, Nagpal S, Gupta RK, Sirari A, Nair RM, Bindumadhava H, Singh S. Dual Microbial Inoculation, a Game Changer? - Bacterial Biostimulants With Multifunctional Growth Promoting Traits to Mitigate Salinity Stress in Spring Mungbean. Front Microbiol 2021; 11:600576. [PMID: 33584566 PMCID: PMC7874087 DOI: 10.3389/fmicb.2020.600576] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2020] [Accepted: 12/16/2020] [Indexed: 11/13/2022] Open
Abstract
Soil microbes play a vital role in improving plant growth, soil health, ameliorate biotic/abiotic stress and enhance crop productivity. The present study was aimed to investigate a coordinated effect of compatible consortium [salt tolerating Rhizobium and rhizobacterium with 1-aminocyclopropane-1-carboxylate (ACC) deaminase] in enhancing plant growth promoting (PGP) traits, symbiotic efficiency, nutrient acquisition, anti-oxidative enzymes, grain yield and associated profitability in spring mungbean. We identified a non-pathogenic compatible Rhizobium sp. LSMR-32 (MH644039.1) and Enterococcus mundtii LSMRS-3 (MH644178.1) from salt affected areas of Punjab, India and the same were assessed to develop consortium biofertilizer based on salt tolerance, multifarious PGP traits, antagonistic defense activities and presence of nifH, acds, pqq, and ipdc genes. Indole Acetic acid (IAA), P-solubilization, biofilm formation, exo-polysaccharides, siderophore, salt tolerance, ACC deaminase activities were all found highly significant in dual inoculant (LSMR-32 + LSMRS-3) treatment compared to LSMR-32 alone. Under saline soil conditions, dual inoculant showed a higher seed germination, plant height, biomass, chlorophyll content and macro and micro-nutrient uptake, than un-inoculated control. However, symbiotic (nodulation, nodule biomass and leghaemoglobin content) and soil quality parameters (phosphatase and soil dehydrogenase enzymes) increased numerically with LSMR-32 + LSMRS-3 over Rhizobium sp. LSMR-32 alone. Dual bacterial inoculation (LSMR-32 + LSMRS-3) increased the proline content (2.05 fold), anti-oxidative enzymes viz., superoxide dismutase (1.50 fold), catalase (1.43 fold) and peroxidase (3.88 folds) in contrast to control treatment. Decreased Na+ accumulation and increased K+ uptake resulted in favorable K+/Na+ ratio through ion homeostasis. Co-inoculation of Rhizobium sp. LSMR-32 and Enterococcus mundtii LSMRS-3 significantly improved the grain yield by 8.92% and led to superior B: C ratio over Rhizobium sp. alone under salt stress. To best of our knowledge this is perhaps the first field report from Indian soils that largely describes dual inoculation of Rhizobium sp. LSMR-32 and Enterococcus mundtii LSMRS-3 and the same can be considered as a game-changer approach to simultaneously induce salt tolerance and improve productivity in spring mungbean under saline stress conditions.
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Affiliation(s)
| | - Poonam Sharma
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
| | - Sharon Nagpal
- Department of Microbiology, Punjab Agricultural University, Ludhiana, India
| | - R K Gupta
- Department of Soil Science, Punjab Agricultural University, Ludhiana, India
| | - Asmita Sirari
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
| | | | | | - Sudeep Singh
- Regional Research Station, Punjab Agricultural University, Bathinda, India
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Paço A, da-Silva JR, Torres DP, Glick BR, Brígido C. Exogenous ACC Deaminase Is Key to Improving the Performance of Pasture Legume-Rhizobial Symbioses in the Presence of a High Manganese Concentration. PLANTS 2020; 9:plants9121630. [PMID: 33255180 PMCID: PMC7760732 DOI: 10.3390/plants9121630] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Revised: 11/20/2020] [Accepted: 11/22/2020] [Indexed: 02/06/2023]
Abstract
Manganese (Mn) toxicity is a very common soil stress around the world, which is responsible for low soil fertility. This manuscript evaluates the effect of the endophytic bacterium Pseudomonas sp. Q1 on different rhizobial-legume symbioses in the absence and presence of Mn toxicity. Three legume species, Cicer arietinum (chickpea), Trifolium subterraneum (subterranean clover), and Medicago polymorpha (burr medic) were used. To evaluate the role of 1-aminocyclopropane-1-carboxylate (ACC) deaminase produced by strain Q1 in these interactions, an ACC deaminase knockout mutant of this strain was constructed and used in those trials. The Q1 strain only promoted the symbiotic performance of Rhizobium leguminosarum bv. trifolii ATCC 14480T and Ensifer meliloti ATCC 9930T, leading to an increase of the growth of their hosts in both conditions. Notably, the acdS gene disruption of strain Q1 abolished the beneficial effect of this bacterium as well as causing this mutant strain to act deleteriously in those specific symbioses. This study suggests that the addition of non-rhizobia with functional ACC deaminase may be a strategy to improve the pasture legume–rhizobial symbioses, particularly when the use of rhizobial strains alone does not yield the expected results due to their difficulty in competing with native strains or in adapting to inhibitory soil conditions.
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Affiliation(s)
- Ana Paço
- MED—Mediterranean Institute for Agriculture, Environment and Development, Instituto de Investigação e Formação Avançada, Universidade de Évora, Pólo da Mitra, Ap. 94, 7006-554 Évora, Portugal; (A.P.); (J.R.d.-S.); (D.P.T.)
| | - José Rodrigo da-Silva
- MED—Mediterranean Institute for Agriculture, Environment and Development, Instituto de Investigação e Formação Avançada, Universidade de Évora, Pólo da Mitra, Ap. 94, 7006-554 Évora, Portugal; (A.P.); (J.R.d.-S.); (D.P.T.)
| | - Denise Pereira Torres
- MED—Mediterranean Institute for Agriculture, Environment and Development, Instituto de Investigação e Formação Avançada, Universidade de Évora, Pólo da Mitra, Ap. 94, 7006-554 Évora, Portugal; (A.P.); (J.R.d.-S.); (D.P.T.)
| | - Bernard R. Glick
- Department of Biology, University of Waterloo, Waterloo, ON N2L 3G1, Canada;
| | - Clarisse Brígido
- MED—Mediterranean Institute for Agriculture, Environment and Development, Instituto de Investigação e Formação Avançada, Universidade de Évora, Pólo da Mitra, Ap. 94, 7006-554 Évora, Portugal; (A.P.); (J.R.d.-S.); (D.P.T.)
- Correspondence: ; Tel.: +351-266-760-878
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Belimov AA, Shaposhnikov AI, Azarova TS, Makarova NM, Safronova VI, Litvinskiy VA, Nosikov VV, Zavalin AA, Tikhonovich IA. Microbial Consortium of PGPR, Rhizobia and Arbuscular Mycorrhizal Fungus Makes Pea Mutant SGECd t Comparable with Indian Mustard in Cadmium Tolerance and Accumulation. PLANTS (BASEL, SWITZERLAND) 2020; 9:E975. [PMID: 32752090 PMCID: PMC7464992 DOI: 10.3390/plants9080975] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Revised: 07/25/2020] [Accepted: 07/28/2020] [Indexed: 11/17/2022]
Abstract
Cadmium (Cd) is one of the most widespread and toxic soil pollutants that inhibits plant growth and microbial activity. Polluted soils can be remediated using plants that either accumulate metals (phytoextraction) or convert them to biologically inaccessible forms (phytostabilization). The phytoremediation potential of a symbiotic system comprising the Cd-tolerant pea (Pisum sativum L.) mutant SGECdt and selected Cd-tolerant microorganisms, such as plant growth-promoting rhizobacterium Variovorax paradoxus 5C-2, nodule bacterium Rhizobium leguminosarum bv. viciae RCAM1066, and arbuscular mycorrhizal fungus Glomus sp. 1Fo, was evaluated in comparison with wild-type pea SGE and the Cd-accumulating plant Indian mustard (Brassica juncea L. Czern.) VIR263. Plants were grown in pots in sterilized uncontaminated or Cd-supplemented (15 mg Cd kg-1) soil and inoculated or not with the microbial consortium. Cadmium significantly inhibited growth of uninoculated and particularly inoculated SGE plants, but had no effect on SGECdt and decreased shoot biomass of B. juncea. Inoculation with the microbial consortium more than doubled pea biomass (both genotypes) irrespective of Cd contamination, but had little effect on B. juncea biomass. Cadmium decreased nodule number and acetylene reduction activity of SGE by 5.6 and 10.8 times, whereas this decrease in SGECdt was 2.1 and 2.8 times only, and the frequency of mycorrhizal structures decreased only in SGE roots. Inoculation decreased shoot Cd concentration and increased seed Cd concentration of both pea genotypes, but had little effect on Cd concentration of B. juncea. Inoculation also significantly increased concentration and/or accumulation of nutrients (Ca, Fe, K, Mg, Mn, N, P, S, and Zn) by Cd-treated pea plants, particularly by the SGECdt mutant. Shoot Cd concentration of SGECdt was twice that of SGE, and the inoculated SGECdt had approximately similar Cd accumulation capacity as compared with B. juncea. Thus, plant-microbe systems based on Cd-tolerant micro-symbionts and plant genotypes offer considerable opportunities to increase plant HM tolerance and accumulation.
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Affiliation(s)
- Andrey A Belimov
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, 196608 Saint-Petersburg, Russia
| | - Alexander I Shaposhnikov
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, 196608 Saint-Petersburg, Russia
| | - Tatiana S Azarova
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, 196608 Saint-Petersburg, Russia
| | - Natalia M Makarova
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, 196608 Saint-Petersburg, Russia
| | - Vera I Safronova
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, 196608 Saint-Petersburg, Russia
| | - Vladimir A Litvinskiy
- Pryanishnikov Institute of Agrochemisty, Pryanishnikova str. 31A, 127434 Moscow, Russia
| | - Vladimir V Nosikov
- Pryanishnikov Institute of Agrochemisty, Pryanishnikova str. 31A, 127434 Moscow, Russia
| | - Aleksey A Zavalin
- Pryanishnikov Institute of Agrochemisty, Pryanishnikova str. 31A, 127434 Moscow, Russia
| | - Igor A Tikhonovich
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, 196608 Saint-Petersburg, Russia
- Saint-Petersburg State University, University Embankment, 199034 Saint-Petersburg, Russia
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9
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Alemneh AA, Zhou Y, Ryder MH, Denton MD. Mechanisms in plant growth-promoting rhizobacteria that enhance legume-rhizobial symbioses. J Appl Microbiol 2020; 129:1133-1156. [PMID: 32592603 DOI: 10.1111/jam.14754] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Revised: 06/07/2020] [Accepted: 06/20/2020] [Indexed: 12/21/2022]
Abstract
Nitrogen fixation is an important biological process in terrestrial ecosystems and for global crop production. Legume nodulation and N2 fixation have been improved using nodule-enhancing rhizobacteria (NER) under both regular and stressed conditions. The positive effect of NER on legume-rhizobia symbiosis can be facilitated by plant growth-promoting (PGP) mechanisms, some of which remain to be identified. NER that produce aminocyclopropane-1-carboxylic acid deaminase and indole acetic acid enhance the legume-rhizobia symbiosis through (i) enhancing the nodule induction, (ii) improving the competitiveness of rhizobia for nodulation, (iii) prolonging functional nodules by suppressing nodule senescence and (iv) upregulating genes associated with legume-rhizobia symbiosis. The means by which these processes enhance the legume-rhizobia symbiosis is the focus of this review. A better understanding of the mechanisms by which PGP rhizobacteria operate, and how they can be altered, will provide opportunities to enhance legume-rhizobial interactions, to provide new advances in plant growth promotion and N2 fixation.
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Affiliation(s)
- A A Alemneh
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, SA, Australia.,China-Australia Joint Laboratory for Soil Ecological Health and Remediation, The University of Adelaide, Glen Osmond, SA, Australia
| | - Y Zhou
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, SA, Australia.,China-Australia Joint Laboratory for Soil Ecological Health and Remediation, The University of Adelaide, Glen Osmond, SA, Australia
| | - M H Ryder
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, SA, Australia.,China-Australia Joint Laboratory for Soil Ecological Health and Remediation, The University of Adelaide, Glen Osmond, SA, Australia
| | - M D Denton
- School of Agriculture, Food and Wine, The University of Adelaide, Glen Osmond, SA, Australia.,China-Australia Joint Laboratory for Soil Ecological Health and Remediation, The University of Adelaide, Glen Osmond, SA, Australia
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10
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ACC deaminase plays a major role in Pseudomonas fluorescens YsS6 ability to promote the nodulation of Alpha- and Betaproteobacteria rhizobial strains. Arch Microbiol 2019; 201:817-822. [DOI: 10.1007/s00203-019-01649-5] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Revised: 03/06/2019] [Accepted: 03/07/2019] [Indexed: 01/07/2023]
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11
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Majeed A, Muhammad Z, Ahmad H. Plant growth promoting bacteria: role in soil improvement, abiotic and biotic stress management of crops. PLANT CELL REPORTS 2018; 37:1599-1609. [PMID: 30178214 DOI: 10.1007/s00299-018-2341-2] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2018] [Accepted: 08/29/2018] [Indexed: 06/08/2023]
Abstract
Agricultural production-a major contributing factor towards global food supply-is highly reliant on field crops which are under severe threats ranging from poor soil quality, biotic, abiotic stresses and changing climatic conditions. To overcome these challenges, larger exertions are required to boost production of agricultural crops in a defensible mode. Since the evolution of fertilizers and pesticides, global crop productivity has experienced an unprecedented elevation, but at the cost of environmental and ecological unsustainability. To enhance the agricultural outputs in a sustainable way, the novel and eco-friendly strategies must be employed in agriculture, which would lead to reduced use of hazardous chemicals. Thus, the utilization of our knowledge about natural growth stimulators can lead to decrease reliance on fertilizers and pesticide which are widely used for increasing crop productivity. Among beneficial microbes, plant growth promoting bacteria offers excellent opportunities for their wide utilization in agriculture to manage soil quality and other factors which correspond to limited growth and yield output of major field crops. The aim of this review is to examine the potential role of plant growth stimulating bacteria in soil fertility and enabling crops to cope with biotic and abiotic challenges.
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Affiliation(s)
- Abdul Majeed
- Department of Botany, Government Degree College Naguman Peshawar, Peshawar, Khyber Pakhtunkhwa, Pakistan.
| | - Zahir Muhammad
- Department of Botany, University of Peshawar, Peshawar, Khyber Pakhtunkhwa, Pakistan
| | - Habib Ahmad
- Islamia College University Peshawar, Peshawar, Khyber Pakhtunkhwa, Pakistan
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Wang Q, Dodd IC, Belimov AA, Jiang F. Rhizosphere bacteria containing 1-aminocyclopropane-1- carboxylate deaminase increase growth and photosynthesis of pea plants under salt stress by limiting Na + accumulation. FUNCTIONAL PLANT BIOLOGY : FPB 2016; 43:161-172. [PMID: 32480450 DOI: 10.1071/fp15200] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2015] [Accepted: 11/05/2015] [Indexed: 06/11/2023]
Abstract
Although plant salt tolerance has been improved by soil inoculation with rhizobacteria containing the enzyme 1-aminocyclopropane-1-carboxylate (ACC) deaminase (which metabolises ACC, the immediate precursor of the phytohormone ethylene), it is not always clear whether ion homeostasis and plant water relations are affected. When pea (Pisum sativum L. cv. Alderman) was grown with 70 and 130mM NaCl, the ACC-deaminase containing rhizobacterium Variovorax paradoxus 5C-2 increased total biomass by 25 and 54% respectively. Nutrient flow modelling showed that V. paradoxus 5C-2 increased K uptake and root to shoot K flow, but decreased Na flow and increased Na deposition in roots. Thus, shoot K+:Na+ ratio increased following V. paradoxus 5C-2 inoculation. At 70 and 130mM NaCl, rhizobacterial inoculation decreased stomatal resistance by 14 and 31% and decreased xylem balancing pressure by 7 and 21% respectively. Furthermore, rhizobacterial inoculation improved photosynthetic efficiency (Fv/Fm) by 12 and 19% and increased maximal electron transport rate (ETR) by 18 and 22% at 70 and 130mM NaCl respectively. Thus V. paradoxus 5C-2 mitigates salt stress by improving water relations, ion homeostasis and photosynthesis of pea plants, and may provide an economic means of promoting growth of plants exposed to salt stress.
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Affiliation(s)
- Qiyuan Wang
- Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University, Beijing, 100875, China
| | - Ian C Dodd
- The Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, UK
| | - Andrey A Belimov
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo Sh. 3, Pushkin-8, 196608, Saint Petersburg, Russian Federation
| | - Fan Jiang
- Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University, Beijing, 100875, China
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13
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Genualdo V, Perucatti A, Pauciullo A, Iannuzzi A, Incarnato D, Spagnuolo MS, Solinas N, Bullitta S, Iannuzzi L. Analysis of chromosome damage by sister chromatid exchange (SCE) and redox homeostasis characterization on sheep flocks from Sardinian pasturelands. THE SCIENCE OF THE TOTAL ENVIRONMENT 2015; 527-528:393-400. [PMID: 25984702 DOI: 10.1016/j.scitotenv.2015.05.021] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2015] [Revised: 04/23/2015] [Accepted: 05/06/2015] [Indexed: 06/04/2023]
Abstract
Over the last decades, an increase of pollutants of diverse origin (industrial, military, mining, etc.) was recorded in several areas of Sardinia Island. We report the results of a multidisciplinary and complementary study based on cytogenetic and physiological analyses. The data obtained show the effects of the environmental impact on six sheep flocks (Sardinian breed) grazing on natural pasturelands next to possible polluted areas and compared to three herds grazing in different areas far from those potentially contaminated and used as control. Sister chromatid exchange (SCE) test was used as cytogenetic test to analyze chromosomal damages and it was performed on peripheral blood samples collected from 129 adult sheep (age > 4 years) randomly selected from polluted (92 animals) and control (37 animals) areas. Two types of cell cultures were performed: without (normal cultures) and with the addition of 5-BrdU. SCE-mean values estimated over 35 cells counted for each animal were 8.65 ± 3.40, 8.10 ± 3.50, 8.05 ± 3.08, 7.42 ± 3.34, 9.28 ± 3.56 and 8.38 ± 3.29 in the exposed areas, whereas the average values were 7.86 ± 3.31 in the control group. Significant increases (P < 0.01) of SCEs were found in three investigated areas of Southern Sardinia. Furthermore, sheep of the same flocks were characterized for blood redox homeostasis in order to define the potential targets of oxidative damage and to identify biomarkers of the extent of animal exposure to environmental contaminants. The plasma levels of Asc, Toc and Ret were found to be significantly lower (P < 0.001) in exposed sheep (I, II, IV and V) than in the control group. TAC as well as GPx and SOD activities were higher in control than in the exposed groups (P < 0.001). Finally, plasma levels of N-Tyr, PC, and LPO were significantly lower (P < 0.001) in the control group than in the exposed groups.
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Affiliation(s)
- Viviana Genualdo
- National Research Council (CNR), Institute of Animal Production Systems in Mediterranean Environments (ISPAAM), Laboratory of Animal Cytogenetics and Gene Mapping, via Argine, 1085, 80147 Naples, Italy.
| | - Angela Perucatti
- National Research Council (CNR), Institute of Animal Production Systems in Mediterranean Environments (ISPAAM), Laboratory of Animal Cytogenetics and Gene Mapping, via Argine, 1085, 80147 Naples, Italy
| | - Alfredo Pauciullo
- National Research Council (CNR), Institute of Animal Production Systems in Mediterranean Environments (ISPAAM), Laboratory of Animal Cytogenetics and Gene Mapping, via Argine, 1085, 80147 Naples, Italy; University of Torino, Department of Agricultural, Forest and Food Sciences (DISAFA), Largo P. Braccini, 2, 10095 Grugliasco (TO), Italy
| | - Alessandra Iannuzzi
- National Research Council (CNR), Institute of Animal Production Systems in Mediterranean Environments (ISPAAM), Laboratory of Animal Cytogenetics and Gene Mapping, via Argine, 1085, 80147 Naples, Italy
| | - Domenico Incarnato
- National Research Council (CNR), Institute of Animal Production Systems in Mediterranean Environments (ISPAAM), Laboratory of Animal Cytogenetics and Gene Mapping, via Argine, 1085, 80147 Naples, Italy
| | - Maria Stefania Spagnuolo
- National Research Council (CNR), Institute of Animal Production Systems in Mediterranean Environments (ISPAAM), Laboratory of Animal Physiology, via Argine, 1085, 80147 Naples, Italy
| | - Nicolina Solinas
- Italian Local Health Authority (ASL) n. 1, Ospedale di Thiesi, viale Madonna di Seunis, 07047 Thiesi, Sassari, Italy
| | - Simonetta Bullitta
- National Research Council (CNR), Institute of Animal Production Systems in Mediterranean Environments (ISPAAM), Traversa La Crucca, 3, Località Baldinca, 07040 Li Punti, Sassari, Italy
| | - Leopoldo Iannuzzi
- National Research Council (CNR), Institute of Animal Production Systems in Mediterranean Environments (ISPAAM), Laboratory of Animal Cytogenetics and Gene Mapping, via Argine, 1085, 80147 Naples, Italy
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14
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Kidd P, Mench M, Álvarez-López V, Bert V, Dimitriou I, Friesl-Hanl W, Herzig R, Janssen JO, Kolbas A, Müller I, Neu S, Renella G, Ruttens A, Vangronsveld J, Puschenreiter M. Agronomic Practices for Improving Gentle Remediation of Trace Element-Contaminated Soils. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2015; 17:1005-1037. [PMID: 25581041 DOI: 10.1080/15226514.2014.1003788] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The last few decades have seen the rise of Gentle soil Remediation Options (GRO), which notably include in situ contaminant stabilization ("inactivation") and plant-based (generally termed "phytoremediation") options. For trace element (TE)-contaminated sites, GRO aim to either decrease their labile pool and/or total content in the soil, thereby reducing related pollutant linkages. Much research has been dedicated to the screening and selection of TE-tolerant plant species and genotypes for application in GRO. However, the number of field trials demonstrating successful GRO remains well below the number of studies carried out at a greenhouse level. The move from greenhouse to field conditions requires incorporating agronomical knowledge into the remediation process and the ecological restoration of ecosystem services. This review summarizes agronomic practices against their demonstrated or potential positive effect on GRO performance, including plant selection, soil management practices, crop rotation, short rotation coppice, intercropping/row cropping, planting methods and plant densities, harvest and fertilization management, pest and weed control and irrigation management. Potentially negative effects of GRO, e.g., the introduction of potentially invasive species, are also discussed. Lessons learnt from long-term European field case sites are given for aiding the choice of appropriate management practices and plant species.
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Affiliation(s)
- Petra Kidd
- a Instituto de Investigaciones Agrobiológicas de Galicia (IIAG) , Consejo Superior de Investigaciones Científicas (CSIC) , Santiago de Compostela , Spain
| | - Michel Mench
- b INRA, UMR BIOGECO, Cestas , France; University of Bordeaux, UMR BIOGECO , Pessac , France , France
| | - Vanessa Álvarez-López
- a Instituto de Investigaciones Agrobiológicas de Galicia (IIAG) , Consejo Superior de Investigaciones Científicas (CSIC) , Santiago de Compostela , Spain
| | - Valérie Bert
- c INERIS, Technologies and Sustainable and Clean Processes , Verneuil en Halatte , France
| | - Ioannis Dimitriou
- d Swedish University of Agriculture Sciences , Department of Crop Production Ecology , Uppsala , Sweden
| | - Wolfgang Friesl-Hanl
- e AIT Austrian Institute of Technology GmbH , Health and Environment Department , Tulln , Austria
| | - Rolf Herzig
- f Phytotech Foundation (PT-F), and AGB-Bioindikation , Umweltbeobachtung und oekologische Planung Quartiergasse , Bern , Switzerland
| | - Jolien Olga Janssen
- g Hasselt University , Centre for Environmental Sciences , Diepenbeek , Belgium
| | - Aliaksandr Kolbas
- b INRA, UMR BIOGECO, Cestas , France; University of Bordeaux, UMR BIOGECO , Pessac , France , France
- h Brest State University named after A.S. Pushkin , Brest , Belarus
| | - Ingo Müller
- i Saxon State Office for Environment , Agriculture and Geology , Dresden , Germany
| | - Silke Neu
- i Saxon State Office for Environment , Agriculture and Geology , Dresden , Germany
| | - Giancarlo Renella
- j University of Florence , Department of Agrifood Production and Environmental Sciences , Florence , Italy
| | - Ann Ruttens
- g Hasselt University , Centre for Environmental Sciences , Diepenbeek , Belgium
| | - Jaco Vangronsveld
- g Hasselt University , Centre for Environmental Sciences , Diepenbeek , Belgium
| | - Markus Puschenreiter
- k University of Natural Resources and Life Sciences Vienna - BOKU , Department of Forest and Soil Sciences , Tulln , Austria
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