Identification and classification of brain tumor MRI images with feature extraction using DWT and probabilistic neural network

A novel approach to brain tumor detection using K-Means++, SGLDM, ResNet50, and synthetic data augmentation

Introduction: Brain tumors are abnormal cell growths in the brain, posing significant treatment challenges. Accurate early detection using non-invasive methods is crucial for effective treatment. This research focuses on improving the early detection of brain tumors in MRI images through advanced deep-learning techniques. The primary goal is to identify the most effective deep-learning model for classifying brain tumors from MRI data, enhancing diagnostic accuracy and reliability. Methods: The proposed method for brain tumor classification integrates segmentation using K-means++, feature extraction from the Spatial Gray Level Dependence Matrix (SGLDM), and classification with ResNet50, along with synthetic data augmentation to enhance model robustness. Segmentation isolates tumor regions, while SGLDM captures critical texture information. The ResNet50 model then classifies the tumors accurately. To further improve the interpretability of the classification results, Grad-CAM is employed, providing visual explanations by highlighting influential regions in the MRI images. Result: In terms of accuracy, sensitivity, and specificity, the evaluation on the Br35H::BrainTumorDetection2020 dataset showed superior performance of the suggested method compared to existing state-of-the-art approaches. This indicates its effectiveness in achieving higher precision in identifying and classifying brain tumors from MRI data, showcasing advancements in diagnostic reliability and efficacy. Discussion: The superior performance of the suggested method indicates its robustness in accurately classifying brain tumors from MRI images, achieving higher accuracy, sensitivity, and specificity compared to existing methods. The method's enhanced sensitivity ensures a greater detection rate of true positive cases, while its improved specificity reduces false positives, thereby optimizing clinical decision-making and patient care in neuro-oncology.

Enhancing Winter Wheat Soil-Plant Analysis Development Value Prediction through Evaluating Unmanned Aerial Vehicle Flight Altitudes, Predictor Variable Combinations, and Machine Learning Algorithms

Monitoring winter wheat Soil-Plant Analysis Development (SPAD) values using Unmanned Aerial Vehicles (UAVs) is an effective and non-destructive method. However, predicting SPAD values during the booting stage is less accurate than other growth stages. Existing research on UAV-based SPAD value prediction has mainly focused on low-altitude flights of 10-30 m, neglecting the potential benefits of higher-altitude flights. The study evaluates predictions of winter wheat SPAD values during the booting stage using Vegetation Indices (VIs) from UAV images at five different altitudes (i.e., 20, 40, 60, 80, 100, and 120 m, respectively, using a DJI P4-Multispectral UAV as an example, with a resolution from 1.06 to 6.35 cm/pixel). Additionally, we compare the predictive performance using various predictor variables (VIs, Texture Indices (TIs), Discrete Wavelet Transform (DWT)) individually and in combination. Four machine learning algorithms (Ridge, Random Forest, Support Vector Regression, and Back Propagation Neural Network) are employed. The results demonstrate a comparable prediction performance between using UAV images at 120 m (with a resolution of 6.35 cm/pixel) and using the images at 20 m (with a resolution of 1.06 cm/pixel). This finding significantly improves the efficiency of UAV monitoring since flying UAVs at higher altitudes results in greater coverage, thus reducing the time needed for scouting when using the same heading overlap and side overlap rates. The overall trend in prediction accuracy is as follows: VIs + TIs + DWT > VIs + TIs > VIs + DWT > TIs + DWT > TIs > VIs > DWT. The VIs + TIs + DWT set obtains frequency information (DWT), compensating for the limitations of the VIs + TIs set. This study enhances the effectiveness of using UAVs in agricultural research and practices.

An effective ensemble learning approach for classification of glioma grades based on novel MRI features

The preoperative diagnosis of brain tumors is important for therapeutic planning as it contributes to the tumors' prognosis. In the last few years, the development in the field of artificial intelligence and machine learning has contributed greatly to the medical area, especially the diagnosis of the grades of brain tumors through radiological images and magnetic resonance images. Due to the complexity of tumor descriptors in medical images, assessing the accurate grade of glioma is a major challenge for physicians. We have proposed a new classification system for glioma grading by integrating novel MRI features with an ensemble learning method, called Ensemble Learning based on Adaptive Power Mean Combiner (EL-APMC). We evaluate and compare the performance of the EL-APMC algorithm with twenty-one classifier models that represent state-of-the-art machine learning algorithms. Results show that the EL-APMC algorithm achieved the best performance in terms of classification accuracy (88.73%) and F1-score (93.12%) over the MRI Brain Tumor dataset called BRATS2015. In addition, we showed that the differences in classification results among twenty-two classifier models have statistical significance. We believe that the EL-APMC algorithm is an effective method for the classification in case of small-size datasets, which are common cases in medical fields. The proposed method provides an effective system for the classification of glioma with high reliability and accurate clinical findings.

AC, Vaishali D. Brain tumor classification: a novel approach integrating GLCM, LBP and composite features

Identifying and classifying tumors are critical in-patient care and treatment planning within the medical domain. Nevertheless, the conventional approach of manually examining tumor images is characterized by its lengthy duration and subjective nature. In response to this challenge, a novel method is proposed that integrates the capabilities of Gray-Level Co-Occurrence Matrix (GLCM) features and Local Binary Pattern (LBP) features to conduct a quantitative analysis of tumor images (Glioma, Meningioma, Pituitary Tumor). The key contribution of this study pertains to the development of interaction features, which are obtained through the outer product of the GLCM and LBP feature vectors. The utilization of this approach greatly enhances the discriminative capability of the extracted features. Furthermore, the methodology incorporates aggregated, statistical, and non-linear features in addition to the interaction features. The GLCM feature vectors are utilized to compute these values, encompassing a range of statistical characteristics and effectively modifying the feature space. The effectiveness of this methodology has been demonstrated on image datasets that include tumors. Integrating GLCM (Gray-Level Co-occurrence Matrix) and LBP (Local Binary Patterns) features offers a comprehensive representation of texture characteristics, enhancing tumor detection and classification precision. The introduced interaction features, a distinctive element of this methodology, provide enhanced discriminative capability, resulting in improved performance. Incorporating aggregated, statistical, and non-linear features enables a more precise representation of crucial tumor image characteristics. When utilized with a linear support vector machine classifier, the approach showcases a better accuracy rate of 99.84%, highlighting its efficacy and promising prospects. The proposed improvement in feature extraction techniques for brain tumor classification has the potential to enhance the precision of medical image processing significantly. The methodology exhibits substantial potential in facilitating clinicians to provide more accurate diagnoses and treatments for brain tumors in forthcoming times.

Detection and classification of brain tumor using hybrid deep learning models

Accurately classifying brain tumor types is critical for timely diagnosis and potentially saving lives. Magnetic Resonance Imaging (MRI) is a widely used non-invasive method for obtaining high-contrast grayscale brain images, primarily for tumor diagnosis. The application of Convolutional Neural Networks (CNNs) in deep learning has revolutionized diagnostic systems, leading to significant advancements in medical imaging interpretation. In this study, we employ a transfer learning-based fine-tuning approach using EfficientNets to classify brain tumors into three categories: glioma, meningioma, and pituitary tumors. We utilize the publicly accessible CE-MRI Figshare dataset to fine-tune five pre-trained models from the EfficientNets family, ranging from EfficientNetB0 to EfficientNetB4. Our approach involves a two-step process to refine the pre-trained EfficientNet model. First, we initialize the model with weights from the ImageNet dataset. Then, we add additional layers, including top layers and a fully connected layer, to enable tumor classification. We conduct various tests to assess the robustness of our fine-tuned EfficientNets in comparison to other pre-trained models. Additionally, we analyze the impact of data augmentation on the model's test accuracy. To gain insights into the model's decision-making, we employ Grad-CAM visualization to examine the attention maps generated by the most optimal model, effectively highlighting tumor locations within brain images. Our results reveal that using EfficientNetB2 as the underlying framework yields significant performance improvements. Specifically, the overall test accuracy, precision, recall, and F1-score were found to be 99.06%, 98.73%, 99.13%, and 98.79%, respectively.

Computational workflow for discovering small molecular binders for shallow binding sites by integrating molecular dynamics simulation, pharmacophore modeling, and machine learning: STAT3 as case study

STAT3 belongs to a family of seven transcription factors. It plays an important role in activating the transcription of various genes involved in a variety of cellular processes. High levels of STAT3 are detected in several types of cancer. Hence, STAT3 inhibition is considered a promising therapeutic anti-cancer strategy. However, since STAT3 inhibitors bind to the shallow SH2 domain of the protein, it is expected that hydration water molecules play significant role in ligand-binding complicating the discovery of potent binders. To remedy this issue, we herein propose to extract pharmacophores from molecular dynamics (MD) frames of a potent co-crystallized ligand complexed within STAT3 SH2 domain. Subsequently, we employ genetic function algorithm coupled with machine learning (GFA-ML) to explore the optimal combination of MD-derived pharmacophores that can account for the variations in bioactivity among a list of inhibitors. To enhance the dataset, the training and testing lists were augmented nearly a 100-fold by considering multiple conformers of the ligands. A single significant pharmacophore emerged after 188 ns of MD simulation to represent STAT3-ligand binding. Screening the National Cancer Institute (NCI) database with this model identified one low micromolar inhibitor most likely binds to the SH2 domain of STAT3 and inhibits this pathway.

AI Deployment on GBM Diagnosis: A Novel Approach to Analyze Histopathological Images Using Image Feature-Based Analysis

BACKGROUND

Glioblastoma (GBM) is one of the most common malignant primary brain tumors, which accounts for 60-70% of all gliomas. Conventional diagnosis and the decision of post-operation treatment plan for glioblastoma is mainly based on the feature-based qualitative analysis of hematoxylin and eosin-stained (H&E) histopathological slides by both an experienced medical technologist and a pathologist. The recent development of digital whole slide scanners makes AI-based histopathological image analysis feasible and helps to diagnose cancer by accurately counting cell types and/or quantitative analysis. However, the technology available for digital slide image analysis is still very limited. This study aimed to build an image feature-based computer model using histopathology whole slide images to differentiate patients with glioblastoma (GBM) from healthy control (HC).

METHOD

Two independent cohorts of patients were used. The first cohort was composed of 262 GBM patients of the Cancer Genome Atlas Glioblastoma Multiform Collection (TCGA-GBM) dataset from the cancer imaging archive (TCIA) database. The second cohort was composed of 60 GBM patients collected from a local hospital. Also, a group of 60 participants with no known brain disease were collected. All the H&E slides were collected. Thirty-three image features (22 GLCM and 11 GLRLM) were retrieved from the tumor volume delineated by medical technologist on H&E slides. Five machine-learning algorithms including decision-tree (DT), extreme-boost (EB), support vector machine (SVM), random forest (RF), and linear model (LM) were used to build five models using the image features extracted from the first cohort of patients. Models built were deployed using the selected key image features for GBM diagnosis from the second cohort (local patients) as model testing, to identify and verify key image features for GBM diagnosis.

RESULTS

All five machine learning algorithms demonstrated excellent performance in GBM diagnosis and achieved an overall accuracy of 100% in the training and validation stage. A total of 12 GLCM and 3 GLRLM image features were identified and they showed a significant difference between the normal and the GBM image. However, only the SVM model maintained its excellent performance in the deployment of the models using the independent local cohort, with an accuracy of 93.5%, sensitivity of 86.95%, and specificity of 99.73%.

CONCLUSION

In this study, we have identified 12 GLCM and 3 GLRLM image features which can aid the GBM diagnosis. Among the five models built, the SVM model proposed in this study demonstrated excellent accuracy with very good sensitivity and specificity. It could potentially be used for GBM diagnosis and future clinical application.

Brain tumor detection and screening using artificial intelligence techniques: Current trends and future perspectives

A brain tumor is an abnormal mass of tissue located inside the skull. In addition to putting pressure on the healthy parts of the brain, it can lead to significant health problems. Depending on the region of the brain tumor, it can cause a wide range of health issues. As malignant brain tumors grow rapidly, the mortality rate of individuals with this cancer can increase substantially with each passing week. Hence it is vital to detect these tumors early so that preventive measures can be taken at the initial stages. Computer-aided diagnostic (CAD) systems, in coordination with artificial intelligence (AI) techniques, have a vital role in the early detection of this disorder. In this review, we studied 124 research articles published from 2000 to 2022. Here, the challenges faced by CAD systems based on different modalities are highlighted along with the current requirements of this domain and future prospects in this area of research.

Autoencoder and restricted Boltzmann machine for transfer learning in functional magnetic resonance imaging task classification

Deep neural networks (DNNs) have been adopted widely as classifiers for functional magnetic resonance imaging (fMRI) data, advancing beyond traditional machine learning models. Consequently, transfer learning of the pre-trained DNN becomes crucial to enhance DNN classification performance, specifically by alleviating an overfitting issue that occurs when a substantial number of DNN parameters are fitted to a relatively small number of fMRI samples. In this study, we first systematically compared the two most popularly used, unsupervised pretraining models for resting-state fMRI (rfMRI) volume data to pre-train the DNNs, namely autoencoder (AE) and restricted Boltzmann machine (RBM). The group in-brain mask used when training AE and RBM displayed a sizable overlap ratio with Yeo's seven functional brain networks (FNs). The parcellated FNs obtained from the RBM were fine-grained compared to those from the AE. The pre-trained AE and RBM served as the weight parameters of the first of the two hidden DNN layers, and the DNN fulfilled the task classifier role for fMRI (tfMRI) data in the Human Connectome Project (HCP). We tested two transfer learning schemes: (1) fixing and (2) fine-tuning the DNN's pre-trained AE or RBM weights. The DNN with transfer learning was compared to a baseline DNN, trained using random initial weights. Overall, DNN classification performance from the transfer learning proved superior when the pre-trained RBM weights were fixed and when the pre-trained AE weights were fine-tuned (average error rates: 14.8% for fixed RBM, 15.1% fine-tuned AE, and 15.5% for the baseline model) compared to the alternative scenarios of DNN transfer learning schemes. Moreover, the optimal transfer learning scheme between the fixed RBM and fine-tuned AE varied according to seven task conditions in the HCP. Nonetheless, the computational load reduced substantially for the fixed-weight-based transfer learning compared to the fine-tuning-based transfer learning (e.g., the number of weight parameters for the fixed-weight-based DNN model reduced to 1.9% compared with a baseline/fine-tuned DNN model). Our findings suggest that weight initialization at the DNN's first layer using RBM-based pre-trained weights provides the most promising approach when the whole-brain fMRI volume supports associated task classification. We believe that our proposed scheme could be applied to a variety of task conditions to improve their classification performance and to utilize computational resources efficiently using our AE/RBM-based pre-trained weights compared to random initial weights for DNN training.

Brain tumor detection and segmentation: Interactive framework with a visual interface and feedback facility for dynamically improved accuracy and trust

Brain cancers caused by malignant brain tumors are one of the most fatal cancer types with a low survival rate mostly due to the difficulties in early detection. Medical professionals therefore use various invasive and non-invasive methods for detecting and treating brain tumors at the earlier stages thus enabling early treatment. The main non-invasive methods for brain tumor diagnosis and assessment are brain imaging like computed tomography (CT), positron emission tomography (PET) and magnetic resonance imaging (MRI) scans. In this paper, the focus is on detection and segmentation of brain tumors from 2D and 3D brain MRIs. For this purpose, a complete automated system with a web application user interface is described which detects and segments brain tumors with more than 90% accuracy and Dice scores. The user can upload brain MRIs or can access brain images from hospital databases to check presence or absence of brain tumor, to check the existence of brain tumor from brain MRI features and to extract the tumor region precisely from the brain MRI using deep neural networks like CNN, U-Net and U-Net++. The web application also provides an option for entering feedbacks on the results of the detection and segmentation to allow healthcare professionals to add more precise information on the results that can be used to train the model for better future predictions and segmentations.

An Intelligent System to Enhance the Performance of Brain Tumor Diagnosis from MR Images

In the human body, cancer is caused by aberrant cell proliferation. Brain tumors are created when cells in the human brain proliferate out of control. Brain tumors consist of two types: benign and malignant. The aberrant parts of benign tumors, which contain dormant tumor cells, can be cured with the appropriate medication. On the other hand, malignant tumors are tumors that contain abnormal cells and an unorganized area of these abnormal cells that cannot be treated with medication. Therefore, surgery is required to remove these brain tumors. Brain cancers are manually identified and diagnosed by a skilled radiologist using traditional procedures. It's a lengthy and error-prone procedure. As a result, it is unsuitable for emerging countries with large populations. So computer-assisted automatic identification and diagnosis of brain tumors are recommended. This work proposes and implements a CAD system for the diagnosis of brain cancers using magnetic resonance imaging (MRI). Preprocessing, segmentation, feature extraction, and classification are the stages of automatic brain MRI processing that necessitate software based on a sophisticated algorithm. Image normalization with contourlet transform (INCT) is used in the preprocessing step to remove undesirable or noisy data. The performance metrics such as PSNR, MSE, and RMSE are computed. Then, the modified hierarchical k-means with firefly clustering (MHKFC) technique is used in the segmentation step to precisely recover the afflicted (tumor) area from the preprocessed image. The enhanced monarch butterfly optimization (EMBO) is used to select and then extract the most important gray-level co-occurrence matrix feature from the segmented image. The classification task was finally completed using the adaptive neuro-fuzzy inference system (ANFIS). The overall classification accuracy is 95.4% ( BRATS 2015), 96.6% ( BRATS 2021), and 93.7% (clinical data) is obtained.

Interpretable features fusion with precision MRI images deep hashing for brain tumor detection

BACKGROUND AND OBJECTIVE

Brain tumor is a deadly disease that can affect people of all ages. Radiologists play a critical role in the early diagnosis and treatment of the 14,000 persons diagnosed with brain tumors on average each year. The best method for tumor detection with computer-aided diagnosis systems (CADs) is Magnetic Resonance Imaging (MRI). However, manual evaluation using conventional approaches may result in a number of inaccuracies due to the complicated tissue properties of a large number of images. Therefore a precision medical image hashing approach is proposed that combines interpretability and feature fusion using MRI images of brain tumors, to address the issue of medical image retrieval.

METHODS

A precision hashing method combining interpretability and feature fusion is proposed to recover the problem of low image resolutions in brain tumor detection on the Brain-Tumor-MRI (BT-MRI) dataset. First, the dataset is pre-trained with the DenseNet201 network using the Comparison-to-Learn method. Then, a global network is created that generates the salience map to yield a mask crop with local region discrimination. Finally, the local network features inputs and public features expressing the local discriminant regions are concatenated for the pooling layer. A hash layer is added between the fully connected layer and the classification layer of the backbone network to generate high-quality hash codes. The final result is obtained by calculating the hash codes with the similarity metric.

RESULTS

Experimental results with the BT-MRI dataset showed that the proposed method can effectively identify tumor regions and more accurate hash codes can be generated by using the three loss functions in feature fusion. It has been demonstrated that the accuracy of medical image retrieval is effectively increased when our method is compared with existing image retrieval approaches.

CONCLUSIONS

Our method has demonstrated that the accuracy of medical image retrieval can be effectively increased and potentially applied to CADs.

Nonlinear Feature Extraction Methods Based on Dual-Tree Complex Wavelet Transform Subimages of Brain Magnetic Resonance Imaging for the Classification of Multiple Diseases

It has been a long time since we use magnetic resonance imaging (MRI) to detect brain diseases and many useful techniques have been developed for this task. However, there is still a potential for further improvement of classification of brain diseases in order to be sure of the results. In this research we presented, for the first time, a non-linear feature extraction method from the MRI sub-images that are obtained from the three levels of the two-dimensional Dual tree complex wavelet transform (2D DT-CWT) in order to classify multiple brain disease. After extracting the non-linear features from the sub-images, we used the spectral regression discriminant analysis (SRDA) algorithm to reduce the classifying features. Instead of using the deep neural networks that are computationally expensive, we proposed the Hybrid RBF network that uses the k-means and recursive least squares (RLS) algorithm simultaneously in its structure for classification. To evaluate the performance of RBF networks with hybrid learning algorithms, we classify nine brain diseases based on MRI processing using these networks, and compare the results with the previously presented classifiers including, supporting vector machines (SVM) and K-nearest neighbour (KNN). Comprehensive comparisons are made with the recently proposed cases by extracting various types and numbers of features. Our aim in this paper is to reduce the complexity and improve the classifying results with the hybrid RBF classifier and the results showed 100 percent classification accuracy in both the two class and the multiple classification of brain diseases in 8 and 10 classes. In this paper, we provided a low computational and precise method for brain MRI disease classification. the results show that the proposed method is not only accurate but also computationally reasonable.

Deep learning automates bidimensional and volumetric tumor burden measurement from MRI in pre- and post-operative glioblastoma patients

Tumor burden assessment by magnetic resonance imaging (MRI) is central to the evaluation of treatment response for glioblastoma. This assessment is, however, complex to perform and associated with high variability due to the high heterogeneity and complexity of the disease. In this work, we tackle this issue and propose a deep learning pipeline for the fully automated end-to-end analysis of glioblastoma patients. Our approach simultaneously identifies tumor sub-regions, including the enhancing tumor, peritumoral edema and surgical cavity in the first step, and then calculates the volumetric and bidimensional measurements that follow the current Response Assessment in Neuro-Oncology (RANO) criteria. Also, we introduce a rigorous manual annotation process which was followed to delineate the tumor sub-regions by the human experts, and to capture their segmentation confidences that are later used while training deep learning models. The results of our extensive experimental study performed over 760 pre-operative and 504 post-operative adult patients with glioma obtained from the public database (acquired at 19 sites in years 2021-2020) and from a clinical treatment trial (47 and 69 sites for pre-/post-operative patients, 2009-2011) and backed up with thorough quantitative, qualitative and statistical analysis revealed that our pipeline performs accurate segmentation of pre- and post-operative MRIs in a fraction of the manual delineation time (up to 20 times faster than humans). Volumetric measurements were in strong agreement with experts with the Intraclass Correlation Coefficient (ICC): 0.959, 0.703, 0.960 for ET, ED, and cavity. Similarly, automated RANO compared favorably with experienced readers (ICC: 0.681 and 0.866) producing consistent and accurate results. Additionally, we showed that RANO measurements are not always sufficient to quantify tumor burden. The high performance of the automated tumor burden measurement highlights the potential of the tool for considerably improving and simplifying radiological evaluation of glioblastoma in clinical trials and clinical practice.

Discovery of new STAT3 inhibitors as anticancer agents using ligand-receptor contact fingerprints and docking-augmented machine learning

STAT3 belongs to a family of seven vital transcription factors. High levels of STAT3 are detected in several types of cancer. Hence, STAT3 inhibition is considered a promising therapeutic anti-cancer strategy. In this work, we used multiple docked poses of STAT3 inhibitors to augment training data for machine learning QSAR modeling. Ligand-Receptor Contact Fingerprints and scoring values were implemented as descriptor variables. Escalating docking-scoring consensus levels were scanned against orthogonal machine learners, and the best learners (Random Forests and XGBoost) were coupled with genetic algorithm and Shapley additive explanations (SHAP) to identify critical descriptors that determine anti-STAT3 bioactivity to be translated into pharmacophore model(s). Two successful pharmacophores were deduced and subsequently used for in silico screening against the National Cancer Institute (NCI) database. A total of 26 hits were evaluated in vitro for their anti-STAT3 bioactivities. Out of which, three hits of novel chemotypes, showed cytotoxic IC50 values in the nanomolar range (35 nM to 6.7 μM). However, two are potent dihydrofolate reductase (DHFR) inhibitors and therefore should have significant indirect STAT3 inhibitory effects. The third hit (cytotoxic IC50 = 0.44 μM) is purely direct STAT3 inhibitor (devoid of DHFR activity) and caused, at its cytotoxic IC50, more than two-fold reduction in the expression of STAT3 downstream genes (c-Myc and Bcl-xL). The presented work indicates that the concept of data augmentation using multiple docked poses is a promising strategy for generating valid machine learning models capable of discriminating active from inactive compounds.

Multi-layer perceptron classification & quantification of neuronal survival in hypoxic-ischemic brain image slices using a novel gradient direction, grey level co-occurrence matrix image training

Hypoxic ischemic encephalopathy (HIE) is a major global cause of neonatal death and lifelong disability. Large animal translational studies of hypoxic ischemic brain injury, such as those conducted in fetal sheep, have and continue to play a key role in furthering our understanding of the cellular and molecular mechanisms of injury and developing new treatment strategies for clinical translation. At present, the quantification of neurons in histological images consists of slow, manually intensive morphological assessment, requiring many repeats by an expert, which can prove to be time-consuming and prone to human error. Hence, there is an urgent need to automate the neuron classification and quantification process. In this article, we present a 'Gradient Direction, Grey level Co-occurrence Matrix' (GD-GLCM) image training method which outperforms and simplifies the standard training methodology using texture analysis to cell-classification. This is achieved by determining the Grey level Co-occurrence Matrix of the gradient direction of a cell image followed by direct passing to a classifier in the form of a Multilayer Perceptron (MLP). Hence, avoiding all texture feature computation steps. The proposed MLP is trained on both healthy and dying neurons that are manually identified by an expert and validated on unseen hypoxic-ischemic brain slice images from the fetal sheep in utero model. We compared the performance of our classifier using the gradient magnitude dataset as well as the gradient direction dataset. We also compare the performance of a perceptron, a 1-layer MLP, and a 2-layer MLP to each other. We demonstrate here a way of accurately identifying both healthy and dying cortical neurons obtained from brain slice images of the fetal sheep model under global hypoxia to high precision by identifying the most minimised MLP architecture, minimised input space (GLCM size) and minimised training data (GLCM representations) to achieve the highest performance over the standard methodology.

Clinical Decision Support Framework for Segmentation and Classification of Brain Tumor MRIs Using a U-Net and DCNN Cascaded Learning Algorithm

Brain tumors (BTs) are an uncommon but fatal kind of cancer. Therefore, the development of computer-aided diagnosis (CAD) systems for classifying brain tumors in magnetic resonance imaging (MRI) has been the subject of many research papers so far. However, research in this sector is still in its early stage. The ultimate goal of this research is to develop a lightweight effective implementation of the U-Net deep network for use in performing exact real-time segmentation. Moreover, a simplified deep convolutional neural network (DCNN) architecture for the BT classification is presented for automatic feature extraction and classification of the segmented regions of interest (ROIs). Five convolutional layers, rectified linear unit, normalization, and max-pooling layers make up the DCNN's proposed simplified architecture. The introduced method was verified on multimodal brain tumor segmentation (BRATS 2015) datasets. Our experimental results on BRATS 2015 acquired Dice similarity coefficient (DSC) scores, sensitivity, and classification accuracy of 88.8%, 89.4%, and 88.6% for high-grade gliomas. When it comes to segmenting BRATS 2015 BT images, the performance of our proposed CAD framework is on par with existing state-of-the-art methods. However, the accuracy achieved in this study for the classification of BT images has improved upon the accuracy reported in prior studies. Image classification accuracy for BRATS 2015 BT has been improved from 88% to 88.6%.

X-Ray Lung Image Classification Using a Canny Edge Detector

The medical imaging technique is used in order to obtain a tissue image of a specific part of the human body without any surgical intervention. The presence of differences in the clinical experiences of a section of doctors or doctors in general can lead to discrepancies in the analysis and understanding of medical images and thus affects the accuracy of the diagnosis for the patient’s condition. The use of a medical imaging system for reliable diagnosis through the use of the computer will lead to high accuracy in diagnosis. For this reason, the need to improve the special performance of systems that perform computer-aided diagnosis used in the medical imaging process has increased special performance of the computer-aided diagnostic systems used in the medical imaging process. The medical image classification technique has the ability to perform a preliminary analysis as well as an understanding of medical images and also can identify the affected parts of the human body, which leads to helping doctors in the process of optimal diagnosis. The process of classifying medical images needs to extract the features of the image so that the classification process is carried out with high accuracy, and one of these features is detecting the edges of the image using a Canny edge detector. This is what the author performed in the research, and the experimental results show the effectiveness and goodness of this method.

Classification Framework for Medical Diagnosis of Brain Tumor with an Effective Hybrid Transfer Learning Model

Brain tumors (BTs) are deadly diseases that can strike people of every age, all over the world. Every year, thousands of people die of brain tumors. Brain-related diagnoses require caution, and even the smallest error in diagnosis can have negative repercussions. Medical errors in brain tumor diagnosis are common and frequently result in higher patient mortality rates. Magnetic resonance imaging (MRI) is widely used for tumor evaluation and detection. However, MRI generates large amounts of data, making manual segmentation difficult and laborious work, limiting the use of accurate measurements in clinical practice. As a result, automated and dependable segmentation methods are required. Automatic segmentation and early detection of brain tumors are difficult tasks in computer vision due to their high spatial and structural variability. Therefore, early diagnosis or detection and treatment are critical. Various traditional Machine learning (ML) techniques have been used to detect various types of brain tumors. The main issue with these models is that the features were manually extracted. To address the aforementioned insightful issues, this paper presents a hybrid deep transfer learning (GN-AlexNet) model of BT tri-classification (pituitary, meningioma, and glioma). The proposed model combines GoogleNet architecture with the AlexNet model by removing the five layers of GoogleNet and adding ten layers of the AlexNet model, which extracts features and classifies them automatically. On the same CE-MRI dataset, the proposed model was compared to transfer learning techniques (VGG-16, AlexNet, SqeezNet, ResNet, and MobileNet-V2) and ML/DL. The proposed model outperformed the current methods in terms of accuracy and sensitivity (accuracy of 99.51% and sensitivity of 98.90%).

BLCov: A novel collaborative-competitive broad learning system for COVID-19 detection from radiology images

With the global outbreak of COVID-19, there is an urgent need to develop an effective and automated detection approach as a faster diagnostic alternative to avoid the spread of COVID-19. Recently, broad learning system (BLS) has been viewed as an alternative method of deep learning which has been applied to many areas. Nevertheless, the sparse autoencoder in classical BLS just considers the representations to reconstruct the input data but ignores the relationship among the extracted features. In this paper, inspired by the effectiveness of the collaborative-competitive representation (CCR) mechanism, a novel collaborative-competitive representation-based autoencoder (CCRAE) is first proposed, and then collaborative-competitive broad learning system (CCBLS) is proposed based on CCRAE to effectively address the issues mentioned above. Moreover, an automated CCBLS-based approach is proposed for COVID-19 detection from radiology images such as CT scans and chest X-ray images. In the proposed approach, a feature extraction module is utilized to extract features from CT scans or chest X-ray images, then we use these features for COVID-19 detection with CCBLS. The experimental results demonstrated that our proposed approach can achieve superior or comparable performance in comparison with ten other state-of-the-art methods.

Application of Genetic Algorithm and U-Net in Brain Tumor Segmentation and Classification: A Deep Learning Approach

The development of unusual cells in the cerebrum causes brain cancer. It is classified primarily into two classes: a noncarcinogenic (benign) type of growth and cancerous (malignant) growth. Early detection of this disease is a quintessential task for all medical practice professionals. For traditional approaches of tumor detections, certain limitations exist. They include less effectiveness, inability to detect due to low-quality processing of images, less dataset for training and testing, less predictive nature to models, and skipping of quintessential stages. All these lead to inaccurate results of tumor detections. To overcome this issue, this paper brings an effective deep learning technique for brain tumor detection with the following stages: (a) data collection from REMBRANDT dataset containing multisequence MRI of 130 patients; (b) preprocessing using conversion to greyscale, skull stripping, and histogram equalization; (c) segmentation uses genetic algorithm; (d) feature extraction using discrete wavelet transform (DWT); (e) particle swarm optimization technique for feature selection; (f) classification using U-Net. Experiment evaluation states that the proposed model (GA-UNET) outperforms (accuracy: 0.97, sensitivity: 0.98, specificity: 0.98) compared to other advanced models.

Probabilistic, Recurrent, Fuzzy Neural Network for Processing Noisy Time-Series Data

The rapidly increasing volumes of data and the need for big data analytics have emphasized the need for algorithms that can accommodate incomplete or noisy data. The concept of recurrency is an important aspect of signal processing, providing greater robustness and accuracy in many situations, such as biological signal processing. Probabilistic fuzzy neural networks (PFNN) have shown potential in dealing with uncertainties associated with both stochastic and nonstochastic noise simultaneously. Previous research work on this topic has addressed either the fuzzy-neural aspects or alternatively the probabilistic aspects, but currently a probabilistic fuzzy neural algorithm with recurrent feedback does not exist. In this article, a PFNN with a recurrent probabilistic generation module (designated PFNN-R) is proposed to enhance and extend the ability of the PFNN to accommodate noisy data. A back-propagation-based mechanism, which is used to shape the distribution of the probabilistic density function of the fuzzy membership, is also developed. The objective of the work was to develop an approach that provides an enhanced capability to accommodate various types of noisy data. We apply the algorithm to a number of benchmark problems and demonstrate through simulation results that the proposed technique incorporating recurrency advances the ability of PFNNs to model time-series data with high intensity, random noise.

Study and analysis of different segmentation methods for brain tumor MRI application

Medical Resonance Imaging (MRI) is one of the preferred imaging methods for brain tumor diagnosis and getting detailed information on tumor type, location, size, identification, and detection. Segmentation divides an image into multiple segments and describes the separation of the suspicious region from pre-processed MRI images to make the simpler image that is more meaningful and easier to examine. There are many segmentation methods, embedded with detection devices, and the response of each method is different. The study article focuses on comparing the performance of several image segmentation algorithms for brain tumor diagnosis, such as Otsu's, watershed, level set, K-means, HAAR Discrete Wavelet Transform (DWT), and Convolutional Neural Network (CNN). All of the techniques are simulated in MATLAB using online images from the Brain Tumor Image Segmentation Benchmark (BRATS) dataset-2018. The performance of these methods is analyzed based on response time and measures such as recall, precision, F-measures, and accuracy. The measured accuracy of Otsu's, watershed, level set, K-means, DWT, and CNN methods is 71.42%, 78.26%, 80.45%, 84.34%, 86.95%, and 91.39 respectively. The response time of CNN is 2.519 s in the MATLAB simulation environment for the designed algorithm. The novelty of the work is that CNN has been proven the best algorithm in comparison to all other methods for brain tumor image segmentation. The simulated and estimated parameters provide the direction to researchers to choose the specific algorithm for embedded hardware solutions and develop the optimal machine-learning models, as the industries are looking for the optimal solutions of CNN and deep learning-based hardware models for the brain tumor.

Confidence Region Identification and Contour Detection in MRI Image

Tumour region extraction (RE) method identifies the area of interest in MR imaging as it also highlights tumour boundaries. Some other intensities are existing, they are not visible but have their existence in region, and this region is called growing region. Such region is to be tumour region. Due to the variation of intensities in MRI images, tumour visibility becomes uncleared. Tumour intensity variations (tumour tissues) mix with normal brain tissues. In the light of above circumstance, tumour growing region becomes challenge. The goal of work is to extract the region of interest with confidence. The objective of the study is to develop the region of interest of brain tumour MRI image method by using confidence score for identifying the variation of intensity. The significance of work is based on identification of region of interest (tumour region). Confidence score is measured through pattern of intensities of MRI image. Similar patterns of brain tumour intensities are identified. Each pattern of intensities is adjusted with certain scale, and then biggest blob is analysed. Various biggest area blobs are combined, and resultant biggest blob is formed. In fact, resultant area blob is a combination of different patterns. Each pattern is assigned with particular colour. These colours highlight the growing region. Further, a contour is detected around the tumour boundaries. With combination of region scale fitting and contour detection (CD), tumour boundaries are further separated from normal tissues. Hence, the confidence score (CS) is formed from CD. CS is further converted to confidence region (CR). Conversion to CR is performed though confidence interval (CI). CI is based on defined conditions. In such conditions, different probabilities are considered. Probability identifies the region. Source of region formation is pixels; these pixels highlight tumour core significantly. This CR is obtained through checking standard deviation and statistical evaluation using confidence interval. Hence, region-of-interest pixels are identifying the CR. CR is evaluated through 97% Dice over index (DOI), 94% Jacquard, MSE 1.24, and PSNR 17.45. Value of testing parameter from benchmark study was JI, DOI, and MSE, PSNR : JI was 31.5%, DOI was 47.3%, MSE was 2.5 dB, and PSNR was 40 dB. The parameters are measured for the complex images; contribution parameter classifies the mean pixel values and deviating pixel values, and the classification of the pixel value is like to be termed as intensities. Mentioned classification extracts the variation of intensity pixels accurately; then, algorithm is highlighting the region as compared to the normal tumour cells.

Segmentation and Classification of Encephalon Tumor by Applying Improved Fast and Robust FCM Algorithm with PSO-Based ELM Technique

Nowadays, so many people are living in world. If so many people are living, then the diseases are also increasing day by day due to adulterated and chemical content food. The people may suffer either from a small disease such as cold and cough or from a big disease such as cancer. In this work, we have discussed on the encephalon tumor or cancer which is a big problem nowadays. If we will consider about the whole world, then there are deficiency of clinical experts or doctors as compared to the encephalon tumor affected person. So, here, we have used an automatic classification of tumor by the help of particle swarm optimization (PSO)-based extreme learning machine (ELM) technique with the segmentation process by the help of improved fast and robust fuzzy C mean (IFRFCM) algorithm and most commonly feature reduction method used gray level co-occurrence matrix (GLCM) that may helpful to the clinical experts. Here, we have used the BraTs (“Multimodal Brain Tumor Segmentation Challenge 2020”) dataset for both the training and testing purpose. It has been monitored that our system has given better classification accuracy as an approximation of 99.47% which can be observed as a good outcome.

An Efficient Multi-Scale Convolutional Neural Network Based Multi-Class Brain MRI Classification for SaMD

A brain tumor is the growth of abnormal cells in certain brain tissues with a high mortality rate; therefore, it requires high precision in diagnosis, as a minor human judgment can eventually cause severe consequences. Magnetic Resonance Image (MRI) serves as a non-invasive tool to detect the presence of a tumor. However, Rician noise is inevitably instilled during the image acquisition process, which leads to poor observation and interferes with the treatment. Computer-Aided Diagnosis (CAD) systems can perform early diagnosis of the disease, potentially increasing the chances of survival, and lessening the need for an expert to analyze the MRIs. Convolutional Neural Networks (CNN) have proven to be very effective in tumor detection in brain MRIs. There have been multiple studies dedicated to brain tumor classification; however, these techniques lack the evaluation of the impact of the Rician noise on state-of-the-art deep learning techniques and the consideration of the scaling impact on the performance of the deep learning as the size and location of tumors vary from image to image with irregular shape and boundaries. Moreover, transfer learning-based pre-trained models such as AlexNet and ResNet have been used for brain tumor detection. However, these architectures have many trainable parameters and hence have a high computational cost. This study proposes a two-fold solution: (a) Multi-Scale CNN (MSCNN) architecture to develop a robust classification model for brain tumor diagnosis, and (b) minimizing the impact of Rician noise on the performance of the MSCNN. The proposed model is a multi-class classification solution that classifies MRIs into glioma, meningioma, pituitary, and non-tumor. The core objective is to develop a robust model for enhancing the performance of the existing tumor detection systems in terms of accuracy and efficiency. Furthermore, MRIs are denoised using a Fuzzy Similarity-based Non-Local Means (FSNLM) filter to improve the classification results. Different evaluation metrics are employed, such as accuracy, precision, recall, specificity, and F1-score, to evaluate and compare the performance of the proposed multi-scale CNN and other state-of-the-art techniques, such as AlexNet and ResNet. In addition, trainable and non-trainable parameters of the proposed model and the existing techniques are also compared to evaluate the computational efficiency. The experimental results show that the proposed multi-scale CNN model outperforms AlexNet and ResNet in terms of accuracy and efficiency at a lower computational cost. Based on experimental results, it is found that our proposed MCNN2 achieved accuracy and F1-score of 91.2% and 91%, respectively, which is significantly higher than the existing AlexNet and ResNet techniques. Moreover, our findings suggest that the proposed model is more effective and efficient in facilitating clinical research and practice for MRI classification.

Review on Hybrid Segmentation Methods for Identification of Brain Tumor in MRI

Modalities like MRI give information about organs and highlight diseases. Organ information is visualized in intensities. The segmentation method plays an important role in the identification of the region of interest (ROI). The ROI can be segmented from the image using clustering, features, and region extraction. Segmentation can be performed in steps; firstly, the region is extracted from the image. Secondly, feature extraction performed, and better features are selected. They can be shape, texture, or intensity. Thirdly, clustering segments the shape of tumor, tumor has specified shape, and shape is detected by feature. Clustering consists of FCM, K-means, FKM, and their hybrid. To support the segmentation, we conducted three studies (region extraction, feature, and clustering) which are discussed in the first line of this review paper. All these studies are targeting MRI as a modality. MRI visualization proved to be more accurate for the identification of diseases compared with other modalities. Information of the modality is compromised due to low pass image. In MRI Images, the tumor intensities are variable in tumor areas as well as in tumor boundaries.

Intelligent Diagnosis and Classification of Keratitis

A corneal ulcer is an open sore that forms on the cornea; it is usually caused by an infection or injury and can result in ocular morbidity. Early detection and discrimination between different ulcer diseases reduces the chances of visual disability. Traditional clinical methods that use slit-lamp images can be tiresome, expensive, and time-consuming. Instead, this paper proposes a deep learning approach to diagnose corneal ulcers, enabling better, improved treatment. This paper suggests two modes to classify corneal images using manual and automatic deep learning feature extraction. Different dimensionality reduction techniques are utilized to uncover the most significant features that give the best results. Experimental results show that manual and automatic feature extraction techniques succeeded in discriminating ulcers from a general grading perspective, with ~93% accuracy using the 30 most significant features extracted using various dimensionality reduction techniques. On the other hand, automatic deep learning feature extraction discriminated severity grading with a higher accuracy than type grading regardless of the number of features used. To the best of our knowledge, this is the first report to ever attempt to distinguish corneal ulcers based on their grade grading, type grading, ulcer shape, and distribution. Identifying corneal ulcers at an early stage is a preventive measure that reduces aggravation and helps track the efficacy of adapted medical treatment, improving the general public health in remote, underserved areas.

A Hybrid Deep Learning-Based Approach for Brain Tumor Classification

Brain tumors (BTs) are spreading very rapidly across the world. Every year, thousands of people die due to deadly brain tumors. Therefore, accurate detection and classification are essential in the treatment of brain tumors. Numerous research techniques have been introduced for BT detection as well as classification based on traditional machine learning (ML) and deep learning (DL). The traditional ML classifiers require hand-crafted features, which is very time-consuming. On the contrary, DL is very robust in feature extraction and has recently been widely used for classification and detection purposes. Therefore, in this work, we propose a hybrid deep learning model called DeepTumorNet for three types of brain tumors (BTs)—glioma, meningioma, and pituitary tumor classification—by adopting a basic convolutional neural network (CNN) architecture. The GoogLeNet architecture of the CNN model was used as a base. While developing the hybrid DeepTumorNet approach, the last 5 layers of GoogLeNet were removed, and 15 new layers were added instead of these 5 layers. Furthermore, we also utilized a leaky ReLU activation function in the feature map to increase the expressiveness of the model. The proposed model was tested on a publicly available research dataset for evaluation purposes, and it obtained 99.67% accuracy, 99.6% precision, 100% recall, and a 99.66% F1-score. The proposed methodology obtained the highest accuracy compared with the state-of-the-art classification results obtained with Alex net, Resnet50, darknet53, Shufflenet, GoogLeNet, SqueezeNet, ResNet101, Exception Net, and MobileNetv2. The proposed model showed its superiority over the existing models for BT classification from the MRI images.

Human–Machine Interaction Using Probabilistic Neural Network for Light Communication Systems

Hand gestures are a natural and efficient means to control systems and are one of the promising but challenging areas of human–machine interaction (HMI). We propose a system to recognize gestures by processing interrupted patterns of light in a visible light communications (VLC) system. Our solution is aimed at the emerging light communication systems and can facilitate the human–computer interaction for services in health-care, robot systems, commerce and the home. The system exploits existing light communications infrastructure using low-cost and readily available components. Different finger sequences are detected using a probabilistic neural network (PNN) trained on light transitions between fingers. A novel pre-processing of the sampled light on a photodiode is described to facilitate the use of the PNN with limited complexity. The contributions of this work include the development of a sensing technique for light communication systems, a novel PNN pre-processing methodology to convert the light sequences into manageable size matrices along with hardware implementation showing the proof of concept under natural lighting conditions. Despite the modest complexity our system could correctly recognize gestures with an accuracy of 73%, demonstrating the potential of this technology. We show that the accuracy depends on the PNN pre-processing matrix size and the Gaussian spread function. The emerging IEEE 802.11bb ‘Li-Fi’ standard is expected to bring the light communications infrastructure into virtually every room across the world and a methodology to exploit a system for gesture sensing is expected to be of considerable interest and value to society.

An Efficient Method for Diagnosing Brain Tumors Based on MRI Images Using Deep Convolutional Neural Networks

This paper proposes a system to effectively identify brain tumors on MRI images using artificial intelligence algorithms and ADAS optimization function. This system is developed with the aim of assisting doctors in diagnosing one of the most dangerous diseases for humans. The data used in the study is patient image data collected from Bach Mai Hospital, Vietnam. The proposed approach includes two main steps. First, we propose the normalization method for brain MRI images to remove unnecessary components without affecting their information content. In the next step, Deep Convolutional Neural Networks are used and then we propose to apply ADAS optimization function to build predictive models based on that normalized dataset. From there, the results will be compared to choose the most optimal method. Those results of the evaluated algorithms through the coefficient F1-score are greater than 94% and the highest value is 97.65%.

Recent Applications of Artificial Intelligence in Early Cancer Detection

Cancer is a deadly disease often caused by the accumulation of various genetic mutations and pathological alterations. The death rate can only be reduced when it is detected in the early stages because treatment of cancer when the tumor has not metastasized in many regions of the body is more effective. However, early cancer detection is fraught with difficulties. Advances in artificial intelligence (AI) have developed a new scope for efficient and early detection of such a fatal disease. AI algorithms have a remarkable ability to perform well on a variety of tasks that are presented or fed to the system. Numerous studies have produced machine learning and deep learning-assisted cancer prediction models to detect cancer from previously accessible data with better accuracy, sensitivity, and specificity. It has been observed that the accuracy of prediction models in classifying fed data as benign, malignant, or normal is improved by implementing efficient image processing techniques and data segmentation augmentation methodologies, along with advanced algorithms. In this review, recent AI-based models for the diagnosis of the most prevalent cancers in the breast, lung, brain, and skin have been analysed. Available AI techniques, data preparation, modeling processes, and performance assessments have been included in the review.

Brain Tumor Classification Using a Combination of Variational Autoencoders and Generative Adversarial Networks

Brain tumors are a pernicious cancer with one of the lowest five-year survival rates. Neurologists often use magnetic resonance imaging (MRI) to diagnose the type of brain tumor. Automated computer-assisted tools can help them speed up the diagnosis process and reduce the burden on the health care systems. Recent advances in deep learning for medical imaging have shown remarkable results, especially in the automatic and instant diagnosis of various cancers. However, we need a large amount of data (images) to train the deep learning models in order to obtain good results. Large public datasets are rare in medicine. This paper proposes a framework based on unsupervised deep generative neural networks to solve this limitation. We combine two generative models in the proposed framework: variational autoencoders (VAEs) and generative adversarial networks (GANs). We swap the encoder–decoder network after initially training it on the training set of available MR images. The output of this swapped network is a noise vector that has information of the image manifold, and the cascaded generative adversarial network samples the input from this informative noise vector instead of random Gaussian noise. The proposed method helps the GAN to avoid mode collapse and generate realistic-looking brain tumor magnetic resonance images. These artificially generated images could solve the limitation of small medical datasets up to a reasonable extent and help the deep learning models perform acceptably. We used the ResNet50 as a classifier, and the artificially generated brain tumor images are used to augment the real and available images during the classifier training. We compared the classification results with several existing studies and state-of-the-art machine learning models. Our proposed methodology noticeably achieved better results. By using brain tumor images generated artificially by our proposed method, the classification average accuracy improved from 72.63% to 96.25%. For the most severe class of brain tumor, glioma, we achieved 0.769, 0.837, 0.833, and 0.80 values for recall, specificity, precision, and F1-score, respectively. The proposed generative model framework could be used to generate medical images in any domain, including PET (positron emission tomography) and MRI scans of various parts of the body, and the results show that it could be a useful clinical tool for medical experts.

A Survey of Brain Tumor Segmentation and Classification Algorithms

A brain Magnetic resonance imaging (MRI) scan of a single individual consists of several slices across the 3D anatomical view. Therefore, manual segmentation of brain tumors from magnetic resonance (MR) images is a challenging and time-consuming task. In addition, an automated brain tumor classification from an MRI scan is non-invasive so that it avoids biopsy and make the diagnosis process safer. Since the beginning of this millennia and late nineties, the effort of the research community to come-up with automatic brain tumor segmentation and classification method has been tremendous. As a result, there are ample literature on the area focusing on segmentation using region growing, traditional machine learning and deep learning methods. Similarly, a number of tasks have been performed in the area of brain tumor classification into their respective histological type, and an impressive performance results have been obtained. Considering state of-the-art methods and their performance, the purpose of this paper is to provide a comprehensive survey of three, recently proposed, major brain tumor segmentation and classification model techniques, namely, region growing, shallow machine learning and deep learning. The established works included in this survey also covers technical aspects such as the strengths and weaknesses of different approaches, pre- and post-processing techniques, feature extraction, datasets, and models' performance evaluation metrics.

Self-Learning Network-based segmentation for real-time brain M.R. images through HARIS

In recent years in medical imaging technology, the advancement for medical diagnosis, the initial assessment of the ailment, and the abnormality have become challenging for radiologists. Magnetic resonance imaging is one such predominant technology used extensively for the initial evaluation of ailments. The primary goal is to mechanizean approach that can accurately assess the damaged region of the human brain throughan automated segmentation process that requires minimal training and can learn by itself from the previous experimental outcomes. It is computationally more efficient than other supervised learning strategies such as CNN deep learning models. As a result, the process of investigation and statistical analysis of the abnormality would be made much more comfortable and convenient. The proposed approach's performance seems to be much better compared to its counterparts, with an accuracy of 77% with minimal training of the model. Furthermore, the performance of the proposed training model is evaluated through various performance evaluation metrics like sensitivity, specificity, the Jaccard Similarity Index, and the Matthews correlation coefficient, where the proposed model is productive with minimal training.

An assessment of noise variance estimations in Bayes threshold denoising under stationary wavelet domain on brain lesions and tumor MRIs

Purpose

A major key success factor regarding proficient Bayes threshold denoising refers to noise variance estimation. This paper focuses on assessing different noise variance estimations in three Bayes threshold models on two different characteristic brain lesions/tumor magnetic resonance imaging (MRIs).

Design/methodology/approach

Here, three Bayes threshold denoising models based on different noise variance estimations under the stationary wavelet transforms (SWT) domain are mainly assessed, compared to state-of-the-art non-local means (NLMs). Each of those three models, namely D1, GB and DR models, respectively, depends on the most detail wavelet subband at the first resolution level, on the entirely global detail subbands and on the detail subband in each direction/resolution. Explicit and implicit denoising performance are consecutively assessed by threshold denoising and segmentation identification results.

Findings

Implicit performance assessment points the first–second best accuracy, 0.9181 and 0.9048 Dice similarity coefficient (Dice), sequentially yielded by GB and DR; reliability is indicated by 45.66% Dice dropping of DR, compared against 53.38, 61.03 and 35.48% of D1 GB and NLMs, when increasing 0.2 to 0.9 noise level on brain lesions MRI. For brain tumor MRI under 0.2 noise level, it denotes the best accuracy of 0.9592 Dice, resulted by DR; however, 8.09% Dice dropping of DR, relative to 6.72%, 8.85 and 39.36% of D1, GB and NLMs is denoted. The lowest explicit and implicit denoising performances of NLMs are obviously pointed.

Research limitations/implications

A future improvement of denoising performance possibly refers to creating a semi-supervised denoising conjunction model. Such model utilizes the denoised MRIs, resulted by DR and D1 thresholding model as uncorrupted image version along with the noisy MRIs, representing corrupted version ones during autoencoder training phase, to reconstruct the original clean image.

Practical implications

This paper should be of interest to readers in the areas of technologies of computing and information science, including data science and applications, computational health informatics, especially applied as a decision support tool for medical image processing.

Originality/value

In most cases, DR and D1 provide the first–second best implicit performances in terms of accuracy and reliability on both simulated, low-detail small-size region-of-interest (ROI) brain lesions and realistic, high-detail large-size ROI brain tumor MRIs.

Correlation between Stage and Histopathological Features and Clinical Outcomes in Patients with Glioma Tumors

BACKGROUND: Brain tumor incidence continues to increase during the last decade in several countries. Determining the response of intracranial tumors to treatment remains a major challenge in the field of neuro-oncology. Karnofsky Performance Status Scale (KPS) is a widely used method for assessing the functional status of a patient. AIM: This study aims to determine the relationship between stadium and histopathological features with clinical outcomes in patients with glioma tumors. METHODS: This was an observational analytic study with a retrospective approach at the H. Adam Malik General Hospital in Medan from September 2019 to September 2020. The study population was glioma patients. The research sample was 36 subjects taken consecutively. The independent variables of the study were stage and histopathological features, while the dependent variable of the study was KPS. Statistical analysis with Gamma test. RESULTS: Mean age was 38.11 ± 13.86 years. Most subjects were male, amounting to 20 subjects (55.6%). The most common type of glioma tumor was anaplastic astrocytoma, amounting to 8 subjects (22.2%). The highest tumor stage was a high-grade glioma, amounting to 19 subjects (52.8%), and the most histopathological features based on WHO criteria were WHO grade 3, totaling 13 subjects (36.1%). Most KPS is 80–100 with 19 subjects (52.8%). There is a significant correlation between the stage and histopathological features with KPS with a moderate correlation strength (p = 0.036; r = 0.598) (p = 0.024; r = 0.508) CONCLUSION: There is a significant correlation between stage and histopathological features with KPS with moderate correlation strength