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Berg C, Sieber M, Sun J. Finishing the egg. Genetics 2024; 226:iyad183. [PMID: 38000906 PMCID: PMC10763546 DOI: 10.1093/genetics/iyad183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Accepted: 09/27/2023] [Indexed: 11/26/2023] Open
Abstract
Gamete development is a fundamental process that is highly conserved from early eukaryotes to mammals. As germ cells develop, they must coordinate a dynamic series of cellular processes that support growth, cell specification, patterning, the loading of maternal factors (RNAs, proteins, and nutrients), differentiation of structures to enable fertilization and ensure embryonic survival, and other processes that make a functional oocyte. To achieve these goals, germ cells integrate a complex milieu of environmental and developmental signals to produce fertilizable eggs. Over the past 50 years, Drosophila oogenesis has risen to the forefront as a system to interrogate the sophisticated mechanisms that drive oocyte development. Studies in Drosophila have defined mechanisms in germ cells that control meiosis, protect genome integrity, facilitate mRNA trafficking, and support the maternal loading of nutrients. Work in this system has provided key insights into the mechanisms that establish egg chamber polarity and patterning as well as the mechanisms that drive ovulation and egg activation. Using the power of Drosophila genetics, the field has begun to define the molecular mechanisms that coordinate environmental stresses and nutrient availability with oocyte development. Importantly, the majority of these reproductive mechanisms are highly conserved throughout evolution, and many play critical roles in the development of somatic tissues as well. In this chapter, we summarize the recent progress in several key areas that impact egg chamber development and ovulation. First, we discuss the mechanisms that drive nutrient storage and trafficking during oocyte maturation and vitellogenesis. Second, we examine the processes that regulate follicle cell patterning and how that patterning impacts the construction of the egg shell and the establishment of embryonic polarity. Finally, we examine regulatory factors that control ovulation, egg activation, and successful fertilization.
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Affiliation(s)
- Celeste Berg
- Department of Genome Sciences, University of Washington, Seattle, WA 98195-5065 USA
| | - Matthew Sieber
- Department of Physiology, UT Southwestern Medical Center, Dallas, TX 75390 USA
| | - Jianjun Sun
- Department of Physiology and Neurobiology, University of Connecticut, Storrs, CT 06269 USA
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2
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Du Y, Gupta P, Qin S, Sieber M. The role of metabolism in cellular quiescence. J Cell Sci 2023; 136:jcs260787. [PMID: 37589342 PMCID: PMC10445740 DOI: 10.1242/jcs.260787] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/18/2023] Open
Abstract
Cellular quiescence is a dormant, non-dividing cell state characterized by significant shifts in physiology and metabolism. Quiescence plays essential roles in a wide variety of biological processes, ranging from microbial sporulation to human reproduction and wound repair. Moreover, when the regulation of quiescence is disrupted, it can drive cancer growth and compromise tissue regeneration after injury. In this Review, we examine the dynamic changes in metabolism that drive and support dormant and transiently quiescent cells, including spores, oocytes and adult stem cells. We begin by defining quiescent cells and discussing their roles in key biological processes. We then examine metabolic factors that influence cellular quiescence in both healthy and disease contexts, and how these could be leveraged in the treatment of cancer.
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Affiliation(s)
- Yipeng Du
- UT Southwestern Medical Center, 5323 Harry Hines Blvd, MC9040 ND13.214, Dallas, TX 75390, USA
| | - Parul Gupta
- UT Southwestern Medical Center, 5323 Harry Hines Blvd, MC9040 ND13.214, Dallas, TX 75390, USA
| | - Shenlu Qin
- UT Southwestern Medical Center, 5323 Harry Hines Blvd, MC9040 ND13.214, Dallas, TX 75390, USA
| | - Matthew Sieber
- UT Southwestern Medical Center, 5323 Harry Hines Blvd, MC9040 ND13.214, Dallas, TX 75390, USA
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3
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Hocaoglu H, Sieber M. Mitochondrial respiratory quiescence: A new model for examining the role of mitochondrial metabolism in development. Semin Cell Dev Biol 2023; 138:94-103. [PMID: 35450766 PMCID: PMC9576824 DOI: 10.1016/j.semcdb.2022.03.040] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Revised: 03/30/2022] [Accepted: 03/30/2022] [Indexed: 12/20/2022]
Abstract
Mitochondria are vital organelles with a central role in all aspects of cellular metabolism. As a means to support the ever-changing demands of the cell, mitochondria produce energy, drive biosynthetic processes, maintain redox homeostasis, and function as a hub for cell signaling. While mitochondria have been widely studied for their role in disease and metabolic dysfunction, this organelle has a continually evolving role in the regulation of development, wound repair, and regeneration. Mitochondrial metabolism dynamically changes as tissues transition through distinct phases of development. These organelles support the energetic and biosynthetic demands of developing cells and function as key structures that coordinate the nutrient status of the organism with developmental progression. This review will examine the mechanisms that link mitochondria to developmental processes. We will also examine the process of mitochondrial respiratory quiescence (MRQ), a novel mechanism for regulating cellular metabolism through the biochemical and physiological remodeling of mitochondria. Lastly, we will examine MRQ as a system to discover the mechanisms that drive mitochondrial remodeling during development.
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Affiliation(s)
- Helin Hocaoglu
- Department of Physiology, UT Southwestern Medical Center, 5323 Harry Hines Blvd, Dallas, TX 75390, USA
| | - Matthew Sieber
- Department of Physiology, UT Southwestern Medical Center, 5323 Harry Hines Blvd, Dallas, TX 75390, USA.
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4
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Yue S, Wang L, DeMartino GN, Zhao F, Liu Y, Sieber MH. Highly conserved shifts in ubiquitin-proteasome system (UPS) activity drive mitochondrial remodeling during quiescence. Nat Commun 2022; 13:4462. [PMID: 35915093 PMCID: PMC9343427 DOI: 10.1038/s41467-022-32206-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Accepted: 07/20/2022] [Indexed: 11/11/2022] Open
Abstract
Defects in cellular proteostasis and mitochondrial function drive many aspects of infertility, cancer, and other age-related diseases. All of these conditions rely on quiescent cells, such as oocytes and adult stem cells, that reduce their activity and remain dormant as part of their roles in tissue homeostasis, reproduction, and even cancer recurrence. Using a multi-organism approach, we show that dynamic shifts in the ubiquitin proteasome system drive mitochondrial remodeling during cellular quiescence. In contrast to the commonly held view that the ubiquitin-proteasome system (UPS) is primarily regulated by substrate ubiquitination, we find that increasing proteasome number and their recruitment to mitochondria support mitochondrial respiratory quiescence (MRQ). GSK3 triggers proteasome recruitment to the mitochondria by phosphorylating outer membrane proteins, such as VDAC, and suppressing mitochondrial fatty acid oxidation. This work defines a process that couples dynamic regulation of UPS activity to coordinated shifts in mitochondrial metabolism in fungi, Drosophila, and mammals during quiescence. Dynamic regulation of cellular proteostasis is linked to the metabolic state of quiescent cells in vivo. Here, the authors show, in multiple organisms, that shifts in the ubiquitin-proteome system are coupled to mitochondrial metabolic changes and subsequent respiratory quiescence.
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Affiliation(s)
- Sibiao Yue
- Department of Physiology, UT Southwestern Medical Center, 5323 Harry Hines Blvd, Dallas, 75390, TX, USA
| | - Lei Wang
- Department of Physiology, UT Southwestern Medical Center, 5323 Harry Hines Blvd, Dallas, 75390, TX, USA
| | - George N DeMartino
- Department of Physiology, UT Southwestern Medical Center, 5323 Harry Hines Blvd, Dallas, 75390, TX, USA
| | - FangZhou Zhao
- Department of Physiology, UT Southwestern Medical Center, 5323 Harry Hines Blvd, Dallas, 75390, TX, USA
| | - Yi Liu
- Department of Physiology, UT Southwestern Medical Center, 5323 Harry Hines Blvd, Dallas, 75390, TX, USA
| | - Matthew H Sieber
- Department of Physiology, UT Southwestern Medical Center, 5323 Harry Hines Blvd, Dallas, 75390, TX, USA.
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5
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Hocaoglu H, Wang L, Yang M, Yue S, Sieber M. Heritable shifts in redox metabolites during mitochondrial quiescence reprogramme progeny metabolism. Nat Metab 2021; 3:1259-1274. [PMID: 34545253 PMCID: PMC8462065 DOI: 10.1038/s42255-021-00450-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Accepted: 08/06/2021] [Indexed: 02/08/2023]
Abstract
Changes in maternal diet and metabolic defects in mothers can profoundly affect health and disease in their progeny. However, the biochemical mechanisms that induce the initial reprogramming events at the cellular level have remained largely unknown owing to limitations in obtaining pure populations of quiescent oocytes. Here, we show that the precocious onset of mitochondrial respiratory quiescence causes a reprogramming of progeny metabolic state. The premature onset of mitochondrial respiratory quiescence drives the lowering of Drosophila oocyte NAD+ levels. NAD+ depletion in the oocyte leads to reduced methionine cycle production of the methyl donor S-adenosylmethionine in embryos and lower levels of histone H3 lysine 27 trimethylation, resulting in enhanced intestinal lipid metabolism in progeny. In addition, we show that triggering cellular quiescence in mammalian cells and chemotherapy-resistant human cancer cell models induces cellular reprogramming events identical to those seen in Drosophila, suggesting a conserved metabolic mechanism in systems reliant on quiescent cells.
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Affiliation(s)
- Helin Hocaoglu
- Department of Physiology, UT Southwestern Medical Center, Dallas, TX, USA
| | - Lei Wang
- Department of Physiology, UT Southwestern Medical Center, Dallas, TX, USA
| | - Mengye Yang
- Department of Physiology, UT Southwestern Medical Center, Dallas, TX, USA
| | - Sibiao Yue
- Department of Physiology, UT Southwestern Medical Center, Dallas, TX, USA
| | - Matthew Sieber
- Department of Physiology, UT Southwestern Medical Center, Dallas, TX, USA.
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6
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Greenblatt EJ, Obniski R, Mical C, Spradling AC. Prolonged ovarian storage of mature Drosophila oocytes dramatically increases meiotic spindle instability. eLife 2019; 8:49455. [PMID: 31755866 PMCID: PMC6905857 DOI: 10.7554/elife.49455] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Accepted: 11/17/2019] [Indexed: 12/21/2022] Open
Abstract
Human oocytes frequently generate aneuploid embryos that subsequently miscarry. In contrast, Drosophila oocytes from outbred laboratory stocks develop fully regardless of maternal age. Since mature Drosophila oocytes are not extensively stored in the ovary under laboratory conditions like they are in the wild, we developed a system to investigate how storage affects oocyte quality. The developmental capacity of stored mature Drosophila oocytes decays in a precise manner over 14 days at 25°C. These oocytes are transcriptionally inactive and persist using ongoing translation of stored mRNAs. Ribosome profiling revealed a progressive 2.3-fold decline in average translational efficiency during storage that correlates with oocyte functional decay. Although normal bipolar meiotic spindles predominate during the first week, oocytes stored for longer periods increasingly show tripolar, monopolar and other spindle defects, and give rise to embryos that fail to develop due to aneuploidy. Thus, meiotic chromosome segregation in mature Drosophila oocytes is uniquely sensitive to prolonged storage. Our work suggests the chromosome instability of human embryos could be mitigated by reducing the period of time mature human oocytes are stored in the ovary prior to ovulation.
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Affiliation(s)
- Ethan J Greenblatt
- Department of Embryology, Howard Hughes Medical Institute Research Laboratories, Carnegie Institution for Science, Baltimore, United States
| | - Rebecca Obniski
- Department of Embryology, Howard Hughes Medical Institute Research Laboratories, Carnegie Institution for Science, Baltimore, United States
| | - Claire Mical
- Department of Embryology, Howard Hughes Medical Institute Research Laboratories, Carnegie Institution for Science, Baltimore, United States
| | - Allan C Spradling
- Department of Embryology, Howard Hughes Medical Institute Research Laboratories, Carnegie Institution for Science, Baltimore, United States
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7
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Sieber MH, Spradling AC. The role of metabolic states in development and disease. Curr Opin Genet Dev 2017; 45:58-68. [PMID: 28347941 PMCID: PMC6894399 DOI: 10.1016/j.gde.2017.03.002] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2016] [Revised: 02/23/2017] [Accepted: 03/02/2017] [Indexed: 12/17/2022]
Abstract
During development, cells adopt distinct metabolic strategies to support growth, produce energy, and meet the demands of a mature tissue. Some of these metabolic states maintain a constrained program of nutrient utilization, while others providing metabolic flexibility as a means to couple developmental progression with nutrient availability. Here we discuss our understanding of metabolic programs, and how they support specific aspects of animal development. During phases of rapid proliferation a subset of metabolic programs provide the building blocks to support growth. During differentiation, metabolic programs shift to support the unique demands of each tissue. Finally, we discuss how a model system, such as Drosophila egg development, can provide a versatile platform to discover novel mechanisms controlling programmed shift in metabolism.
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Affiliation(s)
- Matthew H Sieber
- Department of Embryology, Howard Hughes Medical Institute Labs, Carnegie Institution for Science, Baltimore, MD 21218, United States
| | - Allan C Spradling
- Department of Embryology, Howard Hughes Medical Institute Labs, Carnegie Institution for Science, Baltimore, MD 21218, United States.
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8
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Sieber MH, Thomsen MB, Spradling AC. Electron Transport Chain Remodeling by GSK3 during Oogenesis Connects Nutrient State to Reproduction. Cell 2016; 164:420-32. [PMID: 26824655 PMCID: PMC6894174 DOI: 10.1016/j.cell.2015.12.020] [Citation(s) in RCA: 103] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2015] [Revised: 10/30/2015] [Accepted: 11/26/2015] [Indexed: 11/28/2022]
Abstract
Reproduction is heavily influenced by nutrition and metabolic state. Many common reproductive disorders in humans are associated with diabetes and metabolic syndrome. We characterized the metabolic mechanisms that support oogenesis and found that mitochondria in mature Drosophila oocytes enter a low-activity state of respiratory quiescence by remodeling the electron transport chain (ETC). This shift in mitochondrial function leads to extensive glycogen accumulation late in oogenesis and is required for the developmental competence of the oocyte. Decreased insulin signaling initiates ETC remodeling and mitochondrial respiratory quiescence through glycogen synthase kinase 3 (GSK3). Intriguingly, we observed similar ETC remodeling and glycogen uptake in maturing Xenopus oocytes, suggesting that these processes are evolutionarily conserved aspects of oocyte development. Our studies reveal an important link between metabolism and oocyte maturation.
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Affiliation(s)
- Matthew H Sieber
- Department of Embryology, Carnegie Institution of Washington, 3520 San Martin Drive, Baltimore, MD 21218, USA
| | - Michael B Thomsen
- Department of Biology, Johns Hopkins University, 3400 North Charles Street, Baltimore, MD 21218, USA
| | - Allan C Spradling
- Department of Embryology, Carnegie Institution of Washington, 3520 San Martin Drive, Baltimore, MD 21218, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA.
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9
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Mateo Leach I, Hesseling A, Huibers WHC, Witsenboer H, Beukeboom LW, van de Zande L. Transcriptome and proteome analysis of ovaries of arrhenotokous and thelytokous Venturia canescens. INSECT MOLECULAR BIOLOGY 2009; 18:477-482. [PMID: 19453764 DOI: 10.1111/j.1365-2583.2009.00890.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Under arrhenotoky, unfertilized haploid eggs develop as males but under thelytoky they develop into diploid females after they have undergone diploidy restoration. In the parasitoid wasp Venturia canescens both reproductive modes occur. Thelytoky is genetically determined but the underlying genetics of diploidy restoration remain unknown. In this study we aim to identify the genes and/or proteins that control thelytoky. cDNA-amplified fragment length polymorphism (cDNA-AFLP) analysis of total ovarian RNA and two-dimensional protein electrophoresis in combination with mass spectrometry revealed putative transcripts and proteins involved in arrhenotokous and thelytokous development. The detected tubulin and actin protein differences are most likely functionally related to the two types of reproduction.
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Affiliation(s)
- I Mateo Leach
- Evolutionary Genetics, Center for Ecological and Evolutionary Studies, University of Groningen, NL-9750 AA Haren, The Netherlands.
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10
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The gene structure of the Drosophila melanogaster proto-oncogene, kayak, and its nested gene, fos-intronic gene. Gene 2008; 420:76-81. [PMID: 18571877 DOI: 10.1016/j.gene.2008.05.001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2007] [Revised: 05/02/2008] [Accepted: 05/03/2008] [Indexed: 11/22/2022]
Abstract
We present herein a new model for the structure of the Drosophila kayak gene as well as preliminary data on the functional differences of its various isoforms. kayak is a homolog of the human proto-oncogene, c-fos. kayak has three different starts of transcription, and therefore promoters (P)kay-alpha, (P)kay-beta and (P)kay-gamma. These three promoters lead to four different transcripts: kay-alpha, kay(sro), kay-beta and kay-gamma. (P)kay-alpha produces two different transcripts: kay-alpha and kay(sro) where the other two promoters, (P)kay-beta and (P)kay-gamma, produce a single transcript each. The transcripts kay-alpha, beta and gamma all splice into the mainbody of the kay gene, which codes for the DNA binding domain and leucine zipper; kay(sro) is not spliced. Also, within this region is a nested gene, fos-intronic gene (fig) which is transcribed in the opposite direction. fig codes for a predicted PP2C phosphatase. fig has two different promoters which produce two different transcripts, both in the same reading frame, fig-alpha and beta. This is an unusual gene structure for Drosophila. Only 13% of Drosophila genes have multiple promoters and only 7% have a nested gene. RT-PCR was performed on each transcript to determine the relative amounts of each RNA produced. All spliced kay transcripts appear to have equal abundance. The unspliced kay(sro) transcript has a lower abundance than kay-alpha. Both fig transcripts are also detected in all stages tested. Lethal phase analysis and complementation testing suggest that the three isoforms of kayak may have different functions.
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11
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Rousseau E, Goldstein ES. The gene structure of the Drosophila melanogaster homolog of the human proto-oncogene fos. Gene 2001; 272:315-22. [PMID: 11470538 DOI: 10.1016/s0378-1119(01)00514-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The Drosophila melanogaster homolog of the human proto-oncogene fos is Dfos. It is the only fos homolog in the Drosophila genome. Fos functions as a subunit of the heterodimeric transcription factor AP-1. There are two models of the Dfos gene. The first comes from a cDNA sequence of Dfos (Perkins et al., Genes Dev. 4 (1990) 822). The second is from the gene sequence published by the Drosophila genome project (Adams et al., Science 287 (2000) 2185), and there are notable contradictions between the two models. The promoter and the 5' end of the transcript sequence were not identified in either model. In this paper, we present the gene structure of Dfos and identify the promoter. This promoter has an initiator and a downstream promoter element sequence, but lacks a TATA box. Through comparison of the mRNA and genomic DNA sequences, three introns varying in length from 66 bp to 17.57 kb were found and verified by RT-PCR. The Dfos gene is 21.2 kb in length, giving a transcript of 3438 bp, coding for a predicted protein of 595 amino acids. The 3' untranslated region is confirmed to be 1092 bp in length.
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Affiliation(s)
- E Rousseau
- Biology Department, Molecular and Cellular Biology Program, Arizona State University, Tempe, AZ 85287-1501, USA
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12
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Wang GL, Goldstein ES. An AP-1 binding site in the upstream region of Deb-A is part of a developmentally regulated negative element. BIOCHIMICA ET BIOPHYSICA ACTA 1993; 1216:94-104. [PMID: 8218421 DOI: 10.1016/0167-4781(93)90041-b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
The Deb-A gene from Drosophila melanogaster encodes a small membrane-associated protein, regulated during development, with peak abundance at 12-15 h of embryogenesis. The cis-acting regulatory elements that control expression of Deb-A during embryogenesis were localized using a somatic transformation assay. The Adh gene of D. melanogaster was used as a 'reporter' gene. The promoterless ADH coding sequence was fused to the 5'-upstream control region of Deb-A. Deletions were introduced into the 5'-region using various restriction sites and Bal31 deletion mutagenesis. A negative regulatory element, or silencer, was localized to a segment 47 base pairs long, between -395 and -442. It is responsible for 80% of the repression of gene expression during late development and reduces levels of Deb-A RNA nearly 5-fold. This negative element is temporally functional. It becomes active after 15 h of embryogenesis and it has no effect on gene expression prior to that. Within this negative element of 47 base pairs, two footprint regions were protected from DNase I digestion by embryonic nuclear extracts: one region contains an AP-1 binding site, but the other footprint is due to unknown element(s). High molecular weight DNA-protein complexes on an oligonucleotide probe spanning the AP-1 binding site were identified in gel retardation assays using partially purified bacterially expressed Djun protein or nuclear extracts from Drosophila embryos. These data suggest that the AP-1 site may be partly responsible for decreasing Deb-A expression during the late embryonic developmental stages of D. melanogaster.
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Affiliation(s)
- G L Wang
- Zoology Department, Arizona State University, Tempe 85287
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13
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Vincent WS, Goldstein ES, Allen SA. Sequence and expression of two regulated transcription units during Drosophila melanogaster development: Deb-A and Deb-B. BIOCHIMICA ET BIOPHYSICA ACTA 1990; 1049:59-68. [PMID: 1694092 DOI: 10.1016/0167-4781(90)90084-f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Two transcription units, Deb-A and Deb-B (developmental embryonic), are present in a recombinant bacteriophage clone containing a DNA insert from Drosophila melanogaster. The insert maps cytologically to chromosome 2R at 48EF. Sequence analysis of the open reading frames indicates that both are putative membrane proteins with similar hydropathy profiles. The expression of the encoded poly(A)+ RNAs is regulated during oocyte embryonic and larval development. The 600 base Deb-A RNA is present in oocytes and increases in abundance until 15 h of embryogenesis. Its abundance level drops dramatically between 15 and 19 h and is modulated at a low level in the three larval instars and pupae. The 525 base Deb-B RNA is present in oocytes at a 10-fold lower level than the Deb-A transcript. Its abundance increases until a maximum level is reached at 9-12 h. After this time the transcript is undetectable on Northern transfers. Both RNAs are present in greater than 95% polyadenylated form in the cytoplasm. Deb-B RNA is found on polysomes in proportions similar to the bulk of poly(A)+ RNA populations. Deb-A RNA, on the other hand is mostly nonpolysomal during embryogenesis. The RNAs from both Deb-A and Deb-B are found uniformly distributed throughout the embryo during development.
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Affiliation(s)
- W S Vincent
- Zoology Department, Arizona State University, Tempe 85287
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14
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Goldstein ES, Vincent WS, Schultz KA. The expression and genomic organization of randomly selected cloned Drosophila melanogaster genes. BIOCHIMICA ET BIOPHYSICA ACTA 1986; 867:209-19. [PMID: 3017431 DOI: 10.1016/0167-4781(86)90036-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
A lambda recombinant DNA library containing Drosophila melanogaster nuclear DNA inserts was screened with cDNA made from oocyte and gastrula poly(A)+ RNA. 124 clones were isolated which represented sequences complementary to a distribution of abundancies of their RNAs. The clone set was then used as probes to identify those whose RNA abundancies changed during embryonic development. The vast majority of clones showed little difference during development. Four different clones were identified whose poly(A)+ RNAs were quantitatively regulated; two were oocyte-specific, and two were embryonic-specific. 44 clones were chosen for in situ hybridization to salivary gland polytene chromosomes. The location and distribution of their sites are described. A class of clones, identified by in situ hybridization to the nucleolus, is further described. These clones contain a scrambled array of ribosomal intervening sequences.
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15
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Brogan KL, Goldstein ES. mRNA usage during Drosophila melanogaster embryonic development. Analysis of nine cloned DNA segments. Exp Cell Res 1985; 158:95-103. [PMID: 2581797 DOI: 10.1016/0014-4827(85)90434-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
A set of nine phage lambda clones containing inserts from Drosophila melanogaster which are complementary to cDNA made from oocyte poly(A)+ RNA were selected from a larger group. These cloned elements code for a range of middle abundant RNA sequences which show no appreciable change in abundance during Drosophila embryogenesis. Seven of the nine clones are complementary to two oocyte RNAs, one to three RNAs and one to four RNAs. This study describes the changes that occur in these RNAs during embryonic development in the polysomal and non-polysomal fraction, and in the poly(A)+ RNA and poly(A)- RNA fraction. In all nine of these clones, greater than 70% of the complementary RNA is found in the polysomal region of a sucrose gradient. This proportion increases somewhat during development. Specific changes have been found during development in the proportion of RNA that is poly(A)+. Depending to the cloned sequence, this proportion may increase, decrease, or remain unchanged. For those clones that show a change, most of this change occurs between 8 and 19 h of development. Our data suggest, furthermore, the presence of a class of non-adenylated RNA being utilized during embryogenesis.
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16
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Wadsworth SC, Madhavan K, Bilodeau-Wentworth D. Maternal inheritance of transcripts from three Drosophila src-related genes. Nucleic Acids Res 1985; 13:2153-70. [PMID: 3923437 PMCID: PMC341142 DOI: 10.1093/nar/13.6.2153] [Citation(s) in RCA: 30] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
The Drosophila genome contains three major sequences related to the v-src gene. Previously published molecular studies have confirmed the structural homology between v-src and two of the Drosophila sequences. We have sequenced a portion of the third v-src-related Drosophila gene and found that it also shares structural homology with vertebrate and Drosophila src-family genes. RNA sequences from each of the src genes are present in pre-blastoderm embryos indicating that they are of maternal origin. As embryogenesis proceeds, the levels of each of the src RNA sequences decline. The pre-blastoderm src gene transcripts contain poly(A) and are present on polyribosomes suggesting that they are functional mRNAs. Since the Drosophila src transcripts were maternally inherited, we also investigated their distribution in adult females. The majority of the src transcripts in adult females were contained in ovaries. Only low levels of the transcripts were detected in males. These results strongly suggest that an abundant supply of src protein is required during early embryogenesis, perhaps at the time of cellularization of the blastoderm nuclei.
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17
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KAULENAS MINDAUGASS. Molecular Biology: Protein Synthesis. Biochemistry 1985. [DOI: 10.1016/b978-0-08-030811-1.50014-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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18
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Delaigue M, Poulain T, Durand B. Phytohormone control of translatable RNA populations in sexual organogenesis of the dioecious plant Mercurialis annua L. (2n = 16). PLANT MOLECULAR BIOLOGY 1984; 3:419-429. [PMID: 24310576 DOI: 10.1007/bf00033390] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/1983] [Revised: 02/07/1984] [Accepted: 02/21/1984] [Indexed: 06/02/2023]
Abstract
A cell-free translation system was programmed with total, poly(A), non poly(A) and polysomal RNAs from male and female flowers of this plant with separated sexes. The peptide patterns obtained reflected differences in corresponding translatable RNAs. In total RNA products, three peptides were specific for males, two for females. One of the two male-specific polypeptides of high molecular weight was obtained from poly(A) RNAs and a female-specific one from non poly(A) RNAs. Differences between peptides common to both sexes reflected different concentrations of corresponding messengers. Similar results were obtained with polysomal RNAs. The male-specific RNAs were depending on high endogenous auxin concentrations while the female on active cytokinins. Cytokinin feminization of males induced the female-specific RNAs showing cytokinin action at pretranslational stages. Phytohormone roles are discussed.
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Affiliation(s)
- M Delaigue
- Laboratoire de Biologie Végétale, Université d'Orléans, F.45046, Orléans Cedex, France
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Wahba AJ, Woodley CL. Molecular aspects of development in the brine shrimp Artemia. PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY 1984; 31:221-65. [PMID: 6397772 DOI: 10.1016/s0079-6603(08)60379-7] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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20
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Abstract
We have mapped transcripts arising from 315,000 base-pairs of DNA from chromosome region 87D,E of Drosophila melanogaster. The DNA is represented in a series of overlapping recombinant phages; it constitutes about 14 bands in the polytene chromosome from 87D5,6 to 87E5,6 and contains the essential sequences for at least 12 complementation groups. We have defined 20 discrete polyadenylated RNA species transcribed from non-repetitive DNA in the region at various developmental stages. There is a generally good correlation between the position of transcription units, chromomeric units and complementation groups but with some significant exceptions. In particular, the two large bands in the region (E1,2 and E5,6) each contain several transcription units. We also find that a major part of a large band (E1,2) has no detectable transcripts and is apparently genetically silent.
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Abstract
Mature ovarian eggs of Drosophila can be activated by treatment with hypotonic buffers. Well-fed, 4-day-old virgin flies contain large numbers of partially dehydrated mature eggs. When these eggs are transferred to a hypotonic culture medium, the ovarian eggs swell immediately and within minutes up to 70% become impermeable. The following cellular events ensue: meiosis, which had been arrested at metaphase I, is completed and the "polar body" nuclei fuse; cortical multivesicular bodies with acid phosphatase activity appear within minutes; polar granules fragment, dissociate from mitochondria, and become associated with polysomes; finally, monosomal ribosomes move to the polysomal region of a sucrose gradient. Each of these events corresponds to the normal in vivo effects of ovulation of oocytes, whether or not they are fertilized. When ovarian eggs of a parthenogenetic strain of D. mercatorum were activated by hypotonic treatment, some eggs developed into normal embryos. The presence of high potassium, low pH, and polyethylene glycol enhanced the frequency of normal development. Thus, we suggest that the rehydration of mature oocytes, as they move from the ovary to the uterus, activates the maternal program of the oocyte.
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Abstract
Drosophila preblastoderm (0 - 2.5 hr post-oviposition) embryos incorporate [32P] phosphate into newly synthesized RNA. A fraction of this RNA can be ascribed to nuclear transcription by virtue of its hybridization to nuclear DNA. This confirms the electron microscopic observation of McKnight and Miller (1) that nuclear transcription takes place at a low level in preblastoderm embryos. These nuclear transcripts are relatively small (7 - 12S), poly A(+) and appear on polysomes. Translation of newly synthesized nuclear transcripts during preblastoderm indicates that a zygotic genome contribution to embryonic phenotype may occur earlier in development than previously thought.
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Levy LS, Ganguly R, Ganguly N, Manning JE. The selection, expression, and organization of a set of head-specific genes in Drosophila. Dev Biol 1982; 94:451-64. [PMID: 6818066 DOI: 10.1016/0012-1606(82)90362-1] [Citation(s) in RCA: 39] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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Kastern WH, Swindlehurst M, Aaron C, Hooper J, Berry SJ. Control of mRNA translation in oocytes and developing embryos of giant moths. I. Function of the 5' terminal "Cap"in the tobacco hornworm, Manduca sexta. Dev Biol 1982; 89:437-49. [PMID: 6173276 DOI: 10.1016/0012-1606(82)90332-3] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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Loyd JE, Raff EC, Raff RA. Site and timing of synthesis of tubulin and other proteins during oogenesis in Drosophila melanogaster. Dev Biol 1981; 86:272-84. [PMID: 6793425 DOI: 10.1016/0012-1606(81)90185-8] [Citation(s) in RCA: 33] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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28
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Santon JB, Pellegrini M. Rates of ribosomal protein and total protein synthesis during Drosophila early embryogenesis. Dev Biol 1981; 85:252-7. [PMID: 7250514 DOI: 10.1016/0012-1606(81)90255-4] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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29
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Mulligan PK. Characterization of the female sterile (1) 1304 mutant of Drosophila melanogaster: pattern of RNA metabolism in the ovary. THE JOURNAL OF EXPERIMENTAL ZOOLOGY 1981; 217:109-18. [PMID: 6167658 DOI: 10.1002/jez.1402170112] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
The female sterile mutant of Drosophila melanogaster, fs(1)1304 (1-19 +/- 2), has been characterized. Our studies show that the mutation affects the organization of nucleolar material in the ovarian nurse cells and the pattern of RNA metabolism in the ovary. Autoradiographic analysis of incorporation of 3H-uridine in vivo and analysis of 3H-uridine incorporation into high molecular weight RNA in vitro suggest that RNA from the ovaries of homozygous fs flies is degraded at a higher rate than that from heterozygous fs and wild-type ovaries. It is likely that the RNA class affected is ribosomal RNA. These data are discussed in the context of the functional role for the wild-type gene allelic to fs(1)1304, and it is suggested that one of the effects of the mutation may be on the biogenesis of ribosomes that are to be stored in the oocyte.
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Electrophoretic analysis of newly synthesized and stored maternal RNA during oogenesis ofCalliphora erythrocephala (Dipt.). ACTA ACUST UNITED AC 1981; 190:331-338. [DOI: 10.1007/bf00863270] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/1981] [Accepted: 11/10/1981] [Indexed: 10/26/2022]
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Weide CM, Vincent WS, Goldstein ES. Isolation and characterization of complementary deoxyribonucleic acid complementary to the highly abundant class of poly(adenylic acid)-containing ribonucleic acid from oocytes of Drosophila melanogaster. Biochemistry 1980; 19:5092-8. [PMID: 6161639 DOI: 10.1021/bi00563a024] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
The complementary deoxyribonucleic acid (cDNA) complementary to the highly abundant class of poly(adenylic acid)-containing ribonucleic acid [poly(A+) RNA] from Drosophila melanogaster oocytes has been isolated and characterized. Analysis of the kinetics of hybridization of this cDNA (cDNAHA) to total poly(A+) RNA of oocytes indicates this class contains approximately 86 different sequences. Hybridization kinetics of cDNAHA annealed to poly(A+) RNA from 19-old embryos is essentially the same as that of oocyte poly(A+) RNA. This suggests the highly abundant class of poly(A+) RNA persists in approximately the same frequency through early development. Analysis of the hybridization of cDNAHA to genomic DNA suggests that the highly abundant poly(A+) RNA from oocytes is not enriched for transcripts from repetitive sequences of the genome.
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Bernstein SI, Donady JJ. RNA synthesis and coding capacity of polyadenylated and nonpolyadenylated mRNA from cultures of differentiating Drosophila melanogaster myoblasts. Dev Biol 1980; 79:388-98. [PMID: 6775993 DOI: 10.1016/0012-1606(80)90124-4] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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34
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Burns DK, Chooi WY. Differential localization of ribosomal proteins S14 and 7/8 in egg chambers of D. melanogaster. ACTA ACUST UNITED AC 1980. [DOI: 10.1007/bf00425457] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Arking R, Parente A. Effects of RNA inhibitors on the development of Drosophila embryos permeabilized by a new technique. THE JOURNAL OF EXPERIMENTAL ZOOLOGY 1980; 212:183-94. [PMID: 6156991 DOI: 10.1002/jez.1402120205] [Citation(s) in RCA: 23] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
The molecular analysis of Drosophila embryogenesis has been hindered by the impermeable nature of the vitelline membrane, which has made it difficult to introduce exogenous substances into the developing embryo. We have developed a modification of the permeabilization technique of Limbourg and Zalokar ('73) in which octane is used to permeabilize the vitelline membrane and dimethylsulfoxide is used to facilitate the transport of exogenous substance across the cell membranes. The procedure is highly effective (ca. 95%) and is consistent with a high frequency of normal development. We have used this technique to analyze the effect in vivo of four inhibitors of RNA synthesis (alpha-amanitin, actinomycin-D, rifampin, and rifamycin SV) on the embryogenesis of Drosophila. We have found that there are characteristic stage-specific alterations in the sensitivity of the embryo to these inhibitors which is reflected both by changes in the ID50 dosages and by changes in the developmental abnormalities caused by the drugs. Embryos aged 2-12 hours old undergo a developmental arrest within 30 minutes after application of the inhibitors. Embryos older than 12 hours are able to develop for 140+ minutes after treatment before arresting. The effects of these drugs are consistent with the idea that there exists a definite sequential program of gene activity that is necessary to the normal embryonic development of Drosophila.
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Mermod JJ, Schatz G, Crippa M. Specific control of messenger translation in Drosophila oocytes and embryos. Dev Biol 1980; 75:177-86. [PMID: 6768627 DOI: 10.1016/0012-1606(80)90153-0] [Citation(s) in RCA: 30] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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37
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Actin messenger in maternal RNP particles from an insect embryo (Smittia spec., Chironomidae, Diptera). ACTA ACUST UNITED AC 1980; 188:225-233. [DOI: 10.1007/bf00849052] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/1979] [Accepted: 03/26/1980] [Indexed: 10/26/2022]
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Goldstein ES, Arthur CG. Isolation and characterization of cDNA complementary to transient maternal poly(A)+ RNA from the Drosophila oocyte. BIOCHIMICA ET BIOPHYSICA ACTA 1979; 565:265-74. [PMID: 117835 DOI: 10.1016/0005-2787(79)90204-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
cDNA complementary to total oocyte poly(A)+ RNA from Drosophila melanogaster was enriched for sequences complementary to transient maternal sequences; that is, those sequences which disappear from the oocyte during subsequent. A seven- to ten-fold enrichment factor was obtained, from 5.3% to about 50% of the total cDNA. Kinetic analysis of this enriched fraction indicates that the transient maternal sequences include 44 +/- 14 different sequences.
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39
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Arthur CG, Weide CM, Vincent WS, Goldstein ES. mRNA sequence diversity during early embryogenesis in Drosophila melanogaster. Exp Cell Res 1979; 121:87-94. [PMID: 109299 DOI: 10.1016/0014-4827(79)90447-6] [Citation(s) in RCA: 30] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Peters C, Jeffery WR. Postfertilization poly(A) . protein complex formation on sea urchin maternal messenger RNA. Differentiation 1979; 12:91-7. [PMID: 750268 DOI: 10.1111/j.1432-0436.1979.tb00994.x] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
A two-fold increase in polyadenylate [poly(A)] content occurs between fertilization and the two-cell stage in sea urchin zygotes. In this report the role of this cytoplasmic polyadenylation process in the provision of binding sites for poly(A)-associated proteins during early development of Lytechinus pictus is evaluated. Protein-associated poly(A) sequences, from ribonuclease-treated, post-mitochondrial supernatants of various developmental stages, were collected by nitrocellulose filtration and quantified by 3H-poly(U) complex formation. The proportion of protein-associated poly(A) rose from about 27% to about 60% of the total poly(A), on a nucleotide basis, during the period between fertilization and the eight-cell stage. However, the actual increase in number of poly(A) sequences associated with protein was more extensive, about 2.5-fold, since protein-associated poly(A) sequences average about 45 nucleotides longer than free poly(A). The protein-associated poly(A) of eggs and zygotes is found in two types of protease-sensitive complexes which sediment at 8--12 S and 15--20 S. The 8--12 S complex appears to be selectively increased in amount following fertilization. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis of the poly(A) protein complex fraction indicates the presence of 87,000 and 130,000 molecular weight polypeptides in both eggs and zygotes. It is concluded that quantitative, but not qualitative, alterations in the proportion of protein-associated poly(A) accompanies post-fertilization cytoplasmic polyadenylation in sea urchin zygotes. The attachment of specific proteins to the 3' terminus of maternal RNA's may be involved in their subsequent activities during early embryogenesis.
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Degradation of maternal poly(A)-containing RNA during early embryogenesis of an insect (Smittia spec., chironomidae, diptera). ACTA ACUST UNITED AC 1979; 187:179-193. [DOI: 10.1007/bf00848270] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/1979] [Accepted: 07/06/1979] [Indexed: 10/26/2022]
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RNA and protein synthesis in developing embryos ofSmittia spec. (Chironomidae, Diptera). ACTA ACUST UNITED AC 1979; 187:283-305. [DOI: 10.1007/bf00848465] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/1979] [Accepted: 09/14/1979] [Indexed: 11/25/2022]
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Capco DG, Jeffery WR. Differential distribution of poly(A)-containing RNA in the embryonic cells of Oncopeltus fasciatus. Analysis by in situ hybridization with a [3H]poly(U) probe. Dev Biol 1978; 67:137-51. [PMID: 720750 DOI: 10.1016/0012-1606(78)90305-6] [Citation(s) in RCA: 51] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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45
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Mermod JJ, Crippa M. Variations in the amount of polysomes in mature oocytes of Drosophila melanogaster. Dev Biol 1978; 66:586-92. [PMID: 100363 DOI: 10.1016/0012-1606(78)90264-6] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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46
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Goldstein ES. Translated and sequestered untranslated message sequences in Drosophila oocytes and embryos. Dev Biol 1978; 63:59-66. [PMID: 415916 DOI: 10.1016/0012-1606(78)90113-6] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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