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Spectroscopy of structural isomers of pentanes: An experimental and theoretical study. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.131126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Bhattacharyya D, Zhang Y, Elles CG, Bradforth SE. Electronic Structure of Liquid Alkanes: A Representative Case of Liquid Hexanes and Cyclohexane Studied Using Polarization-Dependent Two-Photon Absorption Spectroscopy. J Phys Chem A 2021; 125:7988-7999. [PMID: 34478284 DOI: 10.1021/acs.jpca.1c06230] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Two-photon absorption (2PA) spectra of liquid cyclohexane and hexanes are reported for the energy range 6.4-8.5 eV (177-145 nm), providing detailed information about their electronic structures in bulk liquid. Using a broadband pump-probe fashion, we measured the continuous 2PA spectra by simultaneous absorption of a 266 nm (4.6 eV) pump photon and one UV-vis probe photon from the white-light continuum (1.8-3.9 eV). Theoretical one-photon absorption (1PA) and 2PA cross sections of isolated gas phase molecules are computed by the equation of motion coupled-cluster method with single and double substitutions (EOM-CCSD) to substantiate the assignment of the experimental spectra, and the natural transition orbital (NTO) analysis provides visualization of the participating orbitals in a transition. Our analysis suggests that upon solvation transitions at the lowest excitation energy involving promotion of electron to the 3s Rydberg orbitals are blue-shifted (∼0.55 eV for cyclohexane and ∼0.18 eV for hexanes) to a greater extent as compared to those involving other Rydberg orbitals, which is similar to the behavior observed for water and alcohols. All other transitions experience negligible (cyclohexane) or minor red-shift by ∼0.15-0.2 eV (hexane) upon solvation. In both alkanes, the spectra are entirely dominated by Rydberg transitions: the most intense bands in 1PA and 2PA spectra are due to the excitation of electrons to the Rydberg "p" and "d" type orbitals, respectively, although one transition terminating in the 3s Rydberg has significant 2PA strength. This work demonstrates that the gas phase electronic transition properties in alkanes are not significantly altered upon solvation. In addition, electronic structure calculations using an isolated-molecule framework appear to provide a reasonable starting point for a semiquantitative picture for spectral assignment and also to analyze the solvatochromic shifts for liquid phase absorption spectra.
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Affiliation(s)
- Dhritiman Bhattacharyya
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
| | - Yuyuan Zhang
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
| | - Christopher G Elles
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
| | - Stephen E Bradforth
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
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Galassi R, Contini C, Pucci M, Gambi E, Manca G. Odorant Monitoring in Natural Gas Pipelines Using Ultraviolet-Visible Spectroscopy. APPLIED SPECTROSCOPY 2021; 75:168-177. [PMID: 32880187 DOI: 10.1177/0003702820960737] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The remote, timely and in-field detection of sulfured additives in natural gas pipelines is a challenge for environmental, commercial and safety reasons. Moreover, the constant control of the level of odorants in a pipeline is required by law to prevent explosions and accidents. Currently, the detection of the most common odorants (THT = tetrahydrothiophane; TBM = tertiary butyl mercaptan) added to natural gas streams in pipelines is made in situ by using portable gas chromatography apparatuses. In this study, we report the analysis of the ultraviolet spectra obtained by a customized ultraviolet spectrophotometer, named Spectra, for the in-field detection of thiophane and tertiary butyl mercaptan. Spectra were conceived to accomplish the remote analysis of odorants in the pipelines of the natural gas stream through the adoption of technical solutions aimed to adapt a basic bench ultraviolet spectrophotometer to the in-field analysis of gases. The remotely controlled system acquires spectra continuously, performing the quantitative determination of odorants and catching systemic or accidental variations of the gaseous mixture in different sites of the pipeline. The analysis of the experimental spectra was carried out also through theoretical quantum mechanical approaches aimed to detect and to correctly assign the nature of the intrinsic electronic transitions of the two odorants, thiophane and tertiary butyl mercaptan, that cause the ultraviolet absorptions. So far, these theoretical aspects have never been studied before. The absorption maxima of thiophane and tertiary butyl mercaptan spectra were computationally simulated through the usage of selected molecular models with satisfactory results. The good matches between the experimental and theoretical datasets corroborate the reliability of the collected data. During the tests, unexpected pollutants and accidental malfunctions have been detected and also identified by Spectra, making this instrument suitable for many purposes.
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Affiliation(s)
- Rossana Galassi
- School of Science and Technology, Chemistry Division, University of Camerino, Camerino, Italy
| | | | | | - Ennio Gambi
- Dipartimento di Ingegneria dell'Informazione, Università Politecnica delle Marche, Ancona, Italy
| | - Gabriele Manca
- Istituto di Chimica dei Composti Organo-Metallici, ICCOM-CNR, Sesto Fiorentino, Italy
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Röder A, de Oliveira N, Grollau F, Mestdagh JM, Gaveau MA, Briant M. Vacuum-Ultraviolet Absorption Spectrum of 3-Methoxyacrylonitrile. J Phys Chem A 2020; 124:9470-9477. [PMID: 33131274 DOI: 10.1021/acs.jpca.0c08974] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
The high-resolution absorption spectrum of 3-methoxyacrylonitrile (3MAN) was measured between 5.27 and 12.59 eV using a synchrotron-based Fourier-transform spectrometer. It was related to an absolute absorption cross-section scale. Complementary calculations at the DFT-MRCI/aug-cc-pVTZ level of theory document the vertical transition energies and oscillator strengths toward the first 19 states of both the E and Z geometrical isomers of 3MAN. Comparisons with the experimental absorption spectrum reveal the similarities and differences between 3MAN, a bifunctional molecule, with acrylonitrile and methylvinylether, where only one functional group is present. As in acrylonitrile, several broad valence transitions were observed up to the ionization limit. They are likely associated with the extended π-system induced by the nitrile group but might also involve σσ* transitions close to the ionization limit. As in methylvinylether, Rydberg series converging to the ionization limit are absent. This is attributed to a difference in neutral and cationic geometry due to a 60° rotation of the methyl group.
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Affiliation(s)
- Anja Röder
- Department of Chemistry, University of Ottawa, 10 Marie Curie, Ottawa, Ontario K1N 6N5, Canada.,Joint Centre for Extreme Photonics, National Research Council and University of Ottawa, Ottawa, Ontario K1A 0R6, Canada
| | - Nelson de Oliveira
- Synchrotron Soleil, Orme des Merisiers, St Aubin BP48, 91192 Gif-sur-Yvette Cedex, France
| | - Floriane Grollau
- Université Paris-Saclay, CEA, CNRS, LIDYL, 91191 Gif-sur-Yvette, France
| | | | - Marc-André Gaveau
- Université Paris-Saclay, CEA, CNRS, LIDYL, 91191 Gif-sur-Yvette, France
| | - Marc Briant
- Université Paris-Saclay, CEA, CNRS, LIDYL, 91191 Gif-sur-Yvette, France
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Thakkar AJ. Dipole oscillator strength distributions, sum rules, mean excitation energies, and isotropic van der Waals coefficients for benzene, pyridazine, pyrimidine, pyrazine, s-triazine, toluene, hexafluorobenzene, and nitrobenzene. J Chem Phys 2020; 153:124307. [PMID: 33003703 DOI: 10.1063/5.0025662] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
Experimental, theoretical, and additive-model photoabsorption cross sections combined with constraints provided by the Kuhn-Reiche-Thomas sum rule and the high-energy behavior of the dipole oscillator strength density are used to construct dipole oscillator strength distributions for benzene, pyridazine (1,2-diazine), pyrimidine (1,3-diazine), pyrazine (1,4-diazine), s-triazine (1,3,5-triazine), toluene (methylbenzene), hexafluorobenzene, and nitrobenzene. The distributions are used to predict dipole sum rules S(k) for -6 ≤ k ≤ 2, mean excitation energies I(k) for -2 ≤ k ≤ 2, and isotropic van der Waals C6 coefficients. A popular combination rule for estimating C6 coefficients for unlike interactions from the C6 coefficients of the like interactions is found to be accurate to better than 1% for 606 of 628 cases (96.4%) in the test set.
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Affiliation(s)
- Ajit J Thakkar
- Department of Chemistry, University of New Brunswick, Fredericton, New Brunswick E3B 5A3, Canada
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Ozaki Y. Recent Advances in Molecular Spectroscopy of Electronic and Vibrational Transitions in Condensed Phase and Its Application to Chemistry. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2019. [DOI: 10.1246/bcsj.20180319] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Yukihiro Ozaki
- School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
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Agúndez M, Roueff E, Le Petit F, Le Bourlot J. The chemistry of disks around T Tauri and Herbig Ae/Be stars. ASTRONOMY AND ASTROPHYSICS 2018; 616:A19. [PMID: 30185991 PMCID: PMC6120683 DOI: 10.1051/0004-6361/201732518] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
CONTEXT Infrared and (sub-)mm observations of disks around T Tauri and Herbig Ae/Be stars point to a chemical differentiation between both types of disks, with a lower detection rate of molecules in disks around hotter stars. AIMS To investigate the underlying causes of the chemical differentiation indicated by observations we perform a comparative study of the chemistry of T Tauri and Herbig Ae/Be disks. This is one of the first studies to compare chemistry in the outer regions of these two types of disks. METHODS We developed a model to compute the chemical composition of a generic protoplanetary disk, with particular attention to the photochemistry, and applied it to a T Tauri and a Herbig Ae/Be disk. We compiled cross sections and computed photodissociation and photoionization rates at each location in the disk by solving the FUV radiative transfer in a 1+1D approach using the Meudon PDR code and adopting observed stellar spectra. RESULTS The warmer disk temperatures and higher ultraviolet flux of Herbig stars compared to T Tauri stars induce some differences in the disk chemistry. In the hot inner regions, H2O, and simple organic molecules like C2H2, HCN, and CH4 are predicted to be very abundant in T Tauri disks and even more in Herbig Ae/Be disks, in contrast with infrared observations that find a much lower detection rate of water and simple organics toward disks around hotter stars. In the outer regions, the model indicates that the molecules typically observed in disks, like HCN, CN, C2H, H2CO, CS, SO, and HCO+, do not have drastic abundance differences between T Tauri and Herbig Ae disks. Some species produced under the action of photochemistry, like C2H and CN, are predicted to have slightly lower abundances around Herbig Ae stars due to a narrowing of the photochemically active layer. Observations indeed suggest that these radicals are somewhat less abundant in Herbig Ae disks, although in any case the inferred abundance differences are small, of a factor of a few at most. A clear chemical differentiation between both types of disks concerns ices. Owing to the warmer temperatures of Herbig Ae disks, one expects snowlines lying farther away from the star and a lower mass of ices compared to T Tauri disks. CONCLUSIONS The global chemical behavior of T Tauri and Herbig Ae/Be disks is quite similar. The main differences are driven by the warmer temperatures of the latter, which result in a larger reservoir or water and simple organics in the inner regions and a lower mass of ices in the outer disk.
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Affiliation(s)
- Marcelino Agúndez
- Instituto de Física Fundamental, CSIC, C/ Serrano 123, E-28006 Madrid, Spain
| | - Evelyne Roueff
- Sorbonne Université, Observatoire de Paris, Université PSL, CNRS, LERMA, F-92190 Meudon, France
| | - Franck Le Petit
- Sorbonne Université, Observatoire de Paris, Université PSL, CNRS, LERMA, F-92190 Meudon, France
| | - Jacques Le Bourlot
- Sorbonne Université, Observatoire de Paris, Université PSL, CNRS, LERMA, F-92190 Meudon, France
- Université Paris-Diderot, Sorbonne Paris-Cité, F-75013 Paris, France
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Rauta AK, Maiti B. Trajectory surface hopping study of propane photodissociation dynamics at 157 nm. J Chem Phys 2018; 149:044308. [PMID: 30068164 DOI: 10.1063/1.5037676] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The photodissociation dynamics of propane molecules has been studied using the quasiclassical trajectory surface hopping (TSH) method in conjunction with Tully's fewest switches algorithm. The trajectories are propagated on potential energy surfaces computed on-the-fly using the multiconfiguration and multireference ab initio method starting in the lowest excited singlet state (HOMO → 3s Rydberg state) of propane at 157 nm with the emphasis on the site specificity of atomic hydrogen elimination, molecular hydrogen elimination, and their product branching ratios. Our dynamics simulation revealed that there are three primary dissociation channels: the atomic hydrogen elimination, the molecular hydrogen elimination, and the C-C bond scission. The trajectories indicate that the H2 elimination from the internal carbon atom (2,2-H2 elimination) and terminal carbon atom (1,1-H2 elimination) is the major process and follows a three centred synchronous concerted mechanism. 1,2-H2 and 1,3-H2 eliminations on the other hand are minor processes and exclusively follow the roaming mediated nonadiabatic dynamics. The probability of elimination of the hydrogen atom from two terminal groups (terminal hydrogen elimination) is greater than that from the internal CH2 group (internal hydrogen elimination). Almost 83% of atomic hydrogen elimination occurs through the asynchronous concerted mechanism from the terminal carbon atom via triple dissociation leading to CH3 + C2H4 + H products. This finding is in good agreement with a recent experimental observation. The present TSH study indicates that approximately one-third of the trajectories those resulted in a triple dissociation channel, CH3 + C2H4 + H completed in the ground singlet state following a nonadiabatic path (hopping from the first excited singlet S1 to the ground state S0) via the C-C and C-H dissociation coordinate conical intersection S1/S0. The products CH3(1 2A2″) + C2H4(1Ag) + H, obtained are ground state methyl radicals and ground state ethylene. The trajectories those ended in a triple dissociation channel CH3 + C2H4 + H adiabatically in the S1 state lead to CH3(1 2A2″) + C2H4 (1 3B1) + H, where singlet methyl radicals and triplet ethylene are formed in their corresponding lowest electronic state via a spin conserving route. Two channels, CH4 + CH3CH and C2H6 + CH2, are found to have minor contributions. In the case of methane elimination, the trajectories that follow an adiabatic path lead to CH3CH(1 1A″) + CH4,(1 1A1), where ethylidene is in the excited state and methane is in the ground state. Methane elimination via nonadiabatic path leads to CH3CH(11A') + CH4(1 1A1), where both ethylidene and methane are in the ground electronic state. Ethane eliminations follow the adiabatic path leading to C2H6(1 1A1g) + CH2(1 1B1) where ethane is in the ground state and methylene is in the first excited state.
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Affiliation(s)
- Akshaya Kumar Rauta
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
| | - Biswajit Maiti
- Department of Chemistry, Institute of Science, Banaras Hindu University, Varanasi 221005, India
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Xu WQ, Xu LQ, Qi DG, Chen T, Liu YW, Zhu LF. Investigations of the valence-shell excitations of molecular ethane by high-energy electron scattering. J Chem Phys 2018; 148:144313. [PMID: 29655330 DOI: 10.1063/1.5021695] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The differential cross sections and generalized oscillator strengths for the low-lying excitations of the valence-shell 1eg orbital electron in ethane have been measured for the first time at a high incident electron energy of 1500 eV and a scattering angular range of 1.5°-10°. A weak feature, termed X here, with a band center of about 7.5 eV has been observed, which was also announced by the previous experimental and theoretical studies. The dynamic behaviors of the generalized oscillator strengths for the 3s (8.7 eV), 3s+3p (9.31 eV, 9.41 eV), and X (∼7.5 eV) transitions on the momentum transfer squared have been obtained. The integral cross sections of these transitions from their thresholds to 5000 eV have been obtained with the aid of the BE-scaling (B is the binding energy and E is the excitation energy) method. The optical oscillator strengths of the above transitions determined by extrapolating their generalized oscillator strengths to the limit of the squared momentum transfer K2 → 0 are in good agreement with the ones from the photoabsorption spectrum [J. W. Au et al., Chem. Phys. 173, 209 (1993)], which indicates that the present differential cross sections, generalized oscillator strengths, and integral cross sections can serve as benchmark data.
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Affiliation(s)
- Wei-Qing Xu
- School of Science, Bengbu University, Bengbu 233030, Anhui, China
| | - Long-Quan Xu
- Hefei National Laboratory for Physical Sciences at Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - De-Guang Qi
- Hefei National Laboratory for Physical Sciences at Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Tao Chen
- Hefei National Laboratory for Physical Sciences at Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Ya-Wei Liu
- Hefei National Laboratory for Physical Sciences at Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Lin-Fan Zhu
- Hefei National Laboratory for Physical Sciences at Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
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Ranjan S, Wordsworth R, Sasselov DD. Atmospheric Constraints on the Surface UV Environment of Mars at 3.9 Ga Relevant to Prebiotic Chemistry. ASTROBIOLOGY 2017; 17:687-708. [PMID: 28537771 DOI: 10.1089/ast.2016.1596] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Recent findings suggest that Mars may have been a clement environment for the emergence of life and may even have compared favorably to Earth in this regard. These findings have revived interest in the hypothesis that prebiotically important molecules or even nascent life may have formed on Mars and been transferred to Earth. UV light plays a key role in prebiotic chemistry. Characterizing the early martian surface UV environment is key to understanding how Mars compares to Earth as a venue for prebiotic chemistry. Here, we present two-stream, multilayer calculations of the UV surface radiance on Mars at 3.9 Ga to constrain the surface UV environment as a function of atmospheric state. We explore a wide range of atmospheric pressures, temperatures, and compositions that correspond to the diversity of martian atmospheric states consistent with available constraints. We include the effects of clouds and dust. We calculate dose rates to quantify the effect of different atmospheric states on UV-sensitive prebiotic chemistry. We find that, for normative clear-sky CO2-H2O atmospheres, the UV environment on young Mars is comparable to young Earth. This similarity is robust to moderate cloud cover; thick clouds (τcloud ≥ 100) are required to significantly affect the martian UV environment, because cloud absorption is degenerate with atmospheric CO2. On the other hand, absorption from SO2, H2S, and dust is nondegenerate with CO2, meaning that, if these constituents build up to significant levels, surface UV fluence can be suppressed. These absorbers have spectrally variable absorption, meaning that their presence affects prebiotic pathways in different ways. In particular, high SO2 environments may admit UV fluence that favors pathways conducive to abiogenesis over pathways unfavorable to it. However, better measurements of the spectral quantum yields of these pathways are required to evaluate this hypothesis definitively. Key Words: Radiative transfer-Origin of life-Mars-UV radiation-Prebiotic chemistry. Astrobiology 17, 687-708.
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Affiliation(s)
- Sukrit Ranjan
- 1 Harvard-Smithsonian Center for Astrophysics , Cambridge, Massachusetts
| | - Robin Wordsworth
- 2 Harvard Paulson School of Engineering and Applied Sciences, Harvard University , Cambridge, Massachusetts
- 3 Department of Earth and Planetary Sciences, Harvard University , Cambridge, Massachusetts
| | - Dimitar D Sasselov
- 1 Harvard-Smithsonian Center for Astrophysics , Cambridge, Massachusetts
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Closser KD, Ogletree DF, Naulleau P, Prendergast D. The importance of inner-shell electronic structure for enhancing the EUV absorption of photoresist materials. J Chem Phys 2017; 146:164106. [DOI: 10.1063/1.4981815] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Kristina D. Closser
- The Molecular Foundry, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, USA
| | - D. Frank Ogletree
- The Molecular Foundry, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, USA
| | - Patrick Naulleau
- Center for X-Ray Optics (CXRO), Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, USA
| | - David Prendergast
- The Molecular Foundry, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, USA
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Ranjan S, Sasselov DD. Constraints on the Early Terrestrial Surface UV Environment Relevant to Prebiotic Chemistry. ASTROBIOLOGY 2017; 17:169-204. [PMID: 28323482 DOI: 10.1089/ast.2016.1519] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
The UV environment is a key boundary condition to abiogenesis. However, considerable uncertainty exists as to planetary conditions and hence surface UV at abiogenesis. Here, we present two-stream multilayer clear-sky calculations of the UV surface radiance on Earth at 3.9 Ga to constrain the UV surface fluence as a function of albedo, solar zenith angle (SZA), and atmospheric composition. Variation in albedo and latitude (through SZA) can affect maximum photoreaction rates by a factor of >10.4; for the same atmosphere, photoreactions can proceed an order of magnitude faster at the equator of a snowball Earth than at the poles of a warmer world. Hence, surface conditions are important considerations when computing prebiotic UV fluences. For climatically reasonable levels of CO2, fluence shortward of 189 nm is screened out, meaning that prebiotic chemistry is robustly shielded from variations in UV fluence due to solar flares or variability. Strong shielding from CO2 also means that the UV surface fluence is insensitive to plausible levels of CH4, O2, and O3. At scattering wavelengths, UV fluence drops off comparatively slowly with increasing CO2 levels. However, if SO2 and/or H2S can build up to the ≥1-100 ppm level as hypothesized by some workers, then they can dramatically suppress surface fluence and hence prebiotic photoprocesses. H2O is a robust UV shield for λ < 198 nm. This means that regardless of the levels of other atmospheric gases, fluence ≲198 nm is only available for cold, dry atmospheres, meaning sources with emission ≲198 (e.g., ArF excimer lasers) can only be used in simulations of cold environments with low abundance of volcanogenic gases. On the other hand, fluence at 254 nm is unshielded by H2O and is available across a broad range of [Formula: see text], meaning that mercury lamps are suitable for initial studies regardless of the uncertainty in primordial H2O and CO2 levels. Key Words: Radiative transfer-Origin of life-Planetary environments-UV radiation-Prebiotic chemistry. Astrobiology 17, 169-204.
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Affiliation(s)
- Sukrit Ranjan
- Harvard-Smithsonian Center for Astrophysics , Cambridge, Massachusetts
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Morisawa Y, Tachibana S, Ikehata A, Yang T, Ehara M, Ozaki Y. Changes in the Electronic States of Low-Temperature Solid n-Tetradecane: Decrease in the HOMO-LUMO Gap. ACS OMEGA 2017; 2:618-625. [PMID: 31457459 PMCID: PMC6641071 DOI: 10.1021/acsomega.6b00539] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2016] [Accepted: 01/30/2017] [Indexed: 06/07/2023]
Abstract
Intermolecular interactions between alkyl chains such as CH···HC should be reflected in the phase behavior of organic compounds. We measured the attenuated total reflectance spectra in the far-UV region (145-300 nm) of n-tetradecane (T m = 5.9 °C), through both cooling and heating, from 15 to -38 °C, to determine its temperature dependency. The chosen temperature range, with the minimum temperature much lower than the melting point of n-tetradecane, allowed for a detailed examination of the liquid-solid phase transition. With decreasing temperature, the absorption band at 153 nm in the liquid phase becomes weaker, and new bands appear at around 200 and 230 nm. Because the observed variations in the band intensities are reversible during both cooling and heating processes and the conversion from the 153 nm band to 200 and 230 nm bands takes place at the melting temperature, we concluded that these spectral changes are caused by changes in the electronic states because of the phase change. To understand the origin of this drastic change observed experimentally, we carried out time-dependent density functional theory calculations using a model dimer structure of n-pentane and periodic density functional theory calculations of the polyethylene crystal structure. Although the simulated absorption spectra of both the optimized and crystal structures did not explain the changes observed experimentally in the absorption spectra, compressed structures were found to be a potential explanation for the experimental findings. These results suggest that an unusually compressed structure might be generated on the surface at low temperatures, and this phase change, which is reversible, is responsible for the unusual absorption observed in the attenuated total reflection-far ultraviolet spectra.
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Affiliation(s)
- Yusuke Morisawa
- Department
of Chemistry, School of Science and Engineering, Kindai University, 3-4-1 Kowakae, 577-8502 Higashi-Osaka, Japan
| | - Shin Tachibana
- Department
of Chemistry, School of Science and Technology, Kwansei-Gakuin University, 2-1 Gakuen, 669-1337 Sanda, Japan
| | - Akifumi Ikehata
- Food
Research Institute, National Agriculture
and Food Research Organization, 2-1-12 Kannondai, 305-8642 Tsukuba, Japan
| | - Tao Yang
- Research
Center for Computational Science, Institute
of Molecular Science, 38 Nishigo-Naka, Myodaiji, 444-8585 Okazaki, Japan
| | - Masahiro Ehara
- Research
Center for Computational Science, Institute
of Molecular Science, 38 Nishigo-Naka, Myodaiji, 444-8585 Okazaki, Japan
| | - Yukihiro Ozaki
- Department
of Chemistry, School of Science and Technology, Kwansei-Gakuin University, 2-1 Gakuen, 669-1337 Sanda, Japan
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Lee KLK, Rabidoux SM, Stanton JF. Cation States of Ethane: HEAT Calculations and Vibronic Simulations of the Photoelectron Spectrum of Ethane. J Phys Chem A 2016; 120:7548-53. [PMID: 27636321 DOI: 10.1021/acs.jpca.6b07516] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
High-accuracy ab initio calculations have been carried out on ethane and its radical cation. With the HEAT-345(Q) scheme, adiabatic ionization potentials of 11.52 and 11.57 eV are determined for the X̃ (2)Eg and à (2)A1g states, respectively, with an uncertainty of ±0.015 eV. Also considered in this report are linear and quadratic vibronic coupling involving both states. With this simple vibronic model, the photoelectron spectrum of ethane was simulated in the 11-15 eV region using linear and full quadratic Jahn-Teller coupling Hamiltonians, and with up to 70 billion direct product basis functions in a high-performance computing environment. Although the linear vibronic coupling model adequately reproduces the spectral envelope, the quadratic vibronic treatment results in much better agreement with the observed spectrum.
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Affiliation(s)
- Kin Long Kelvin Lee
- School of Chemistry, University of New South Wales , Kensington, NSW 2052, Australia
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Roaming mediated nonadiabatic dynamics in molecular hydrogen elimination from propane at 157 nm. Chem Phys Lett 2016. [DOI: 10.1016/j.cplett.2016.08.057] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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18
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Tenorio BNC, Nascimento MAC, Coriani S, Rocha AB. Coupled Cluster Study of Photoionization and Photodetachment Cross Sections. J Chem Theory Comput 2016; 12:4440-59. [DOI: 10.1021/acs.jctc.6b00524] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Bruno Nunes Cabral Tenorio
- Universidade Federal do Rio de Janeiro, Instituto de Quı́mica, Av. Athos da Silveira Ramos, 149, Rio de Janeiro - RJ, 21941-909, Brazil
| | - Marco Antonio Chaer Nascimento
- Universidade Federal do Rio de Janeiro, Instituto de Quı́mica, Av. Athos da Silveira Ramos, 149, Rio de Janeiro - RJ, 21941-909, Brazil
| | - Sonia Coriani
- Dipartimento
di Scienze Chimiche e Farmaceutiche, Università degli Studi di Trieste, via L. Giorgieri 1, I-34127, Trieste, Italy
- Aarhus
Institute of Advanced Studies, Aarhus University, 8000 Aarhus C, Denmark
| | - Alexandre Braga Rocha
- Universidade Federal do Rio de Janeiro, Instituto de Quı́mica, Av. Athos da Silveira Ramos, 149, Rio de Janeiro - RJ, 21941-909, Brazil
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19
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Ozaki Y, Tanabe I. Far-ultraviolet spectroscopy of solid and liquid states: characteristics, instrumentation, and applications. Analyst 2016; 141:3962-81. [DOI: 10.1039/c6an00522e] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Far-ultraviolet spectroscopy (≥200 nm) can greatly contribute to the basic science of electronic structures for almost all materials and their applications.
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Affiliation(s)
- Yukihiro Ozaki
- School of Science and Technology
- Kwansei Gakuin University
- Sanda
- Japan
| | - Ichiro Tanabe
- School of Science and Technology
- Kwansei Gakuin University
- Sanda
- Japan
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20
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Ranjan S, Sasselov DD. Influence of the UV Environment on the Synthesis of Prebiotic Molecules. ASTROBIOLOGY 2016; 16:68-88. [PMID: 26789356 DOI: 10.1089/ast.2015.1359] [Citation(s) in RCA: 77] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Ultraviolet radiation is common to most planetary environments and could play a key role in the chemistry of molecules relevant to abiogenesis (prebiotic chemistry). In this work, we explore the impact of UV light on prebiotic chemistry that might occur in liquid water on the surface of a planet with an atmosphere. We consider effects including atmospheric absorption, attenuation by water, and stellar variability to constrain the UV input as a function of wavelength. We conclude that the UV environment would be characterized by broadband input, and wavelengths below 204 nm and 168 nm would be shielded out by atmospheric CO2 and water, respectively. We compare this broadband prebiotic UV input to the narrowband UV sources (e.g., mercury lamps) often used in laboratory studies of prebiotic chemistry and explore the implications for the conclusions drawn from these experiments. We consider as case studies the ribonucleotide synthesis pathway of Powner et al. (2009) and the sugar synthesis pathway of Ritson and Sutherland (2012). Irradiation by narrowband UV light from a mercury lamp formed an integral component of these studies; we quantitatively explore the impact of more realistic UV input on the conclusions that can be drawn from these experiments. Finally, we explore the constraints solar UV input places on the buildup of prebiotically important feedstock gasses like CH4 and HCN. Our results demonstrate the importance of characterizing the wavelength dependence (action spectra) of prebiotic synthesis pathways to determine how pathways derived under laboratory irradiation conditions will function under planetary prebiotic conditions.
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Affiliation(s)
- Sukrit Ranjan
- Harvard-Smithsonian Center for Astrophysics , Cambridge, Massachusetts
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21
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Davari N, Haghdani S, Åstrand PO, Schatz GC. Local electric field factors by a combined charge-transfer and point–dipole interaction model. RSC Adv 2015. [DOI: 10.1039/c5ra04183j] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A model for the local electric field as a linear response to a frequency-dependent external electric field is presented based on a combined charge-transfer and point–dipole interaction force-field model.
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Affiliation(s)
- Nazanin Davari
- Department of Chemistry
- Norwegian University of Science and Technology (NTNU)
- Trondheim
- Norway
| | - Shokouh Haghdani
- Department of Chemistry
- Norwegian University of Science and Technology (NTNU)
- Trondheim
- Norway
| | - Per-Olof Åstrand
- Department of Chemistry
- Norwegian University of Science and Technology (NTNU)
- Trondheim
- Norway
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22
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Ruberti M, Yun R, Gokhberg K, Kopelke S, Cederbaum LS, Tarantelli F, Averbukh V. Total photoionization cross-sections of excited electronic states by the algebraic diagrammatic construction-Stieltjes-Lanczos method. J Chem Phys 2014; 140:184107. [DOI: 10.1063/1.4874269] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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23
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Abstract
Electrons have so little mass that in less than a second they can tunnel through potential energy barriers that are several electron-volts high and several nanometers wide. Electron tunneling is a critical functional element in a broad spectrum of applications, ranging from semiconductor diodes to the photosynthetic and respiratory charge transport chains. Prior to the 1970s, chemists generally believed that reactants had to collide in order to effect a transformation. Experimental demonstrations that electrons can transfer between reactants separated by several nanometers led to a revision of the chemical reaction paradigm. Experimental investigations of electron exchange between redox partners separated by molecular bridges have elucidated many fundamental properties of these reactions, particularly the variation of rate constants with distance. Theoretical work has provided critical insights into the superexchange mechanism of electronic coupling between distant redox centers. Kinetics measurements have shown that electrons can tunnel about 2.5 nm through proteins on biologically relevant time scales. Longer-distance biological charge flow requires multiple electron tunneling steps through chains of redox cofactors. The range of phenomena that depends on long-range electron tunneling continues to expand, providing new challenges for both theory and experiment.
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Affiliation(s)
- Jay R. Winkler
- Beckman Institute, California
Institute of Technology, 1200 East California Boulevard, Pasadena, California 91125, United States
| | - Harry B. Gray
- Beckman Institute, California
Institute of Technology, 1200 East California Boulevard, Pasadena, California 91125, United States
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24
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Ruberti M, Yun R, Gokhberg K, Kopelke S, Cederbaum LS, Tarantelli F, Averbukh V. Total molecular photoionization cross-sections by algebraic diagrammatic construction-Stieltjes-Lanczos method: Benchmark calculations. J Chem Phys 2013; 139:144107. [DOI: 10.1063/1.4824431] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
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25
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Koseki S, Shimakura N, Teranishi Y, Lin SH, Fujimura Y. Neutral-fragmentation paths of methane induced by intense ultrashort IR laser pulses: ab initio molecular orbital approach. J Phys Chem A 2013; 117:333-41. [PMID: 23231683 DOI: 10.1021/jp309931c] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Instantaneous (laser-field-dependent) potential energy curves leading to neutral fragmentations of methane were calculated at several laser intensities from 1.4 × 10(13) to 1.2 × 10(14) W/cm(2) (from 1.0 × 10(10) to 3.0 × 10(10) V/m) using ab initio molecular orbital (MO) methods to validate the observation of neutral fragmentations induced by intense femtosecond IR pulses (Kong et al. J. Chem. Phys. 2006, 125, 133320). Two fragmentation paths, CH(2) + 2H and CH(2) + H(2), in (1)T(2) superexcited states that are located in the energy range of 12-16 eV were considered as the reaction paths because these states are responsible for Jahn-Teller distortion opening up reaction paths during ultrashort pulses. As field intensity increased, the low-lying excited (1)A(1) states originated from the Jahn-Teller (1)T(2) states were substantially stabilized along the neutral-fragment path CH(4) → CH(2) + 2H and were located below the ionization threshold. On the other hand, the low-lying excited (1)B(1) states, which also originate from the Jahn-Teller (1)T(2) states, were embedded on the ionized state along the dissociation path to CH(2) + H(2). This indicates that ionic fragments, rather than neutral ones, are produced along the CH(2) + H(2) path. The computational results support neutral fragmentations through superexcited states proposed by Kong et al.
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Affiliation(s)
- Shiro Koseki
- Department of Chemistry, Graduate School of Science, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai 599-8531, Japan
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26
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Morisawa Y, Tachibana S, Ehara M, Ozaki Y. Elucidating Electronic Transitions from σ Orbitals of Liquid n- and Branched Alkanes by Far-Ultraviolet Spectroscopy and Quantum Chemical Calculations. J Phys Chem A 2012; 116:11957-64. [DOI: 10.1021/jp307634m] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Yusuke Morisawa
- Department of Chemistry, School
of Science and Engineering, Kinki University, 3-4-1 Kowakae, Higashi-Osaka City, Osaka 577-8502, Japan
| | - Shin Tachibana
- Department of Chemistry, School
of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
| | - Masahiro Ehara
- Research Center for Computational
Science, Institute of Molecular Science, 38 Nishigo-Naka, Myodaiji, Okazaki 444-8585, Japan
| | - Yukihiro Ozaki
- Department of Chemistry, School
of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
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27
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Simpson MJ, Tuckett RP. Vacuum-UV negative photoion spectroscopy of gas-phase polyatomic molecules. INT REV PHYS CHEM 2011. [DOI: 10.1080/0144235x.2011.581000] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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28
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Rogers N, Simpson M, Tuckett R, Dunn K, Latimer C. Vacuum-UV negative photoion spectroscopy of CH4. Mol Phys 2010. [DOI: 10.1080/00268970903535483] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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29
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Costner EA, Long BK, Navar C, Jockusch S, Lei X, Zimmerman P, Campion A, Turro NJ, Willson CG. Fundamental Optical Properties of Linear and Cyclic Alkanes: VUV Absorbance and Index of Refraction. J Phys Chem A 2009; 113:9337-47. [DOI: 10.1021/jp903435c] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Elizabeth A. Costner
- Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, Department of Chemistry, The University of Texas at Austin, Austin, Texas, Department of Chemistry, Columbia Univeristy, New York, New York, and SEMATECH, Austin, Texas
| | - Brian K. Long
- Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, Department of Chemistry, The University of Texas at Austin, Austin, Texas, Department of Chemistry, Columbia Univeristy, New York, New York, and SEMATECH, Austin, Texas
| | - Carlos Navar
- Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, Department of Chemistry, The University of Texas at Austin, Austin, Texas, Department of Chemistry, Columbia Univeristy, New York, New York, and SEMATECH, Austin, Texas
| | - Steffen Jockusch
- Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, Department of Chemistry, The University of Texas at Austin, Austin, Texas, Department of Chemistry, Columbia Univeristy, New York, New York, and SEMATECH, Austin, Texas
| | - Xuegong Lei
- Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, Department of Chemistry, The University of Texas at Austin, Austin, Texas, Department of Chemistry, Columbia Univeristy, New York, New York, and SEMATECH, Austin, Texas
| | - Paul Zimmerman
- Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, Department of Chemistry, The University of Texas at Austin, Austin, Texas, Department of Chemistry, Columbia Univeristy, New York, New York, and SEMATECH, Austin, Texas
| | - Alan Campion
- Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, Department of Chemistry, The University of Texas at Austin, Austin, Texas, Department of Chemistry, Columbia Univeristy, New York, New York, and SEMATECH, Austin, Texas
| | - Nicholas J. Turro
- Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, Department of Chemistry, The University of Texas at Austin, Austin, Texas, Department of Chemistry, Columbia Univeristy, New York, New York, and SEMATECH, Austin, Texas
| | - C. Grant Willson
- Department of Chemical Engineering, The University of Texas at Austin, Austin, Texas, Department of Chemistry, The University of Texas at Austin, Austin, Texas, Department of Chemistry, Columbia Univeristy, New York, New York, and SEMATECH, Austin, Texas
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30
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Silva R, Gichuhi WK, Doyle MB, Winney AH, Suits AG. Photodissociation of heptane isomers and relative ionization efficiencies of butyl and propyl radicals at 157 nm. Phys Chem Chem Phys 2009; 11:4777-81. [PMID: 19492132 DOI: 10.1039/b823505h] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report an ion imaging and time-of-flight mass spectroscopy study of the photodissociation of a variety of heptane isomers using 157 nm dissociation and ionization. Time-of-flight mass spectra show that C(3)H(7) + C(4)H(9) is the dominant detected product channel following one-color 157 nm dissociation/ionization of heptanes. The results further allow determination of the relative ionization efficiencies of 1- and 2-butyl and propyl radicals at 157 nm. Momentum matching for the two radical products indicates that, for the C3-C4 products, neutral dissociation followed by ionization is the main source of the detected signals. The images show isotropic angular distributions and the translational energy distributions peak at very low energy, with only approximately 0.3 eV or 8% of the available energy appearing in translation. This is consistent with dissociation from the ground state or low-lying triplet states following non-radiative electronic relaxation.
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Affiliation(s)
- Ruchira Silva
- Department of Chemistry, Wayne State University, Detroit, MI 48202, USA
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31
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Linares EM, Leite CAP, Valadares LF, Silva CA, Rezende CA, Galembeck F. Molecular Mapping by Low-Energy-Loss Energy-Filtered Transmission Electron Microscopy Imaging. Anal Chem 2009; 81:2317-24. [DOI: 10.1021/ac8024834] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Elisângela M. Linares
- Institute of Chemistry, Universidade Estadual de Campinas, Caixa Postal 6154, 13083-970, Campinas, SP, Brazil
| | - Carlos A. P. Leite
- Institute of Chemistry, Universidade Estadual de Campinas, Caixa Postal 6154, 13083-970, Campinas, SP, Brazil
| | - Leonardo F. Valadares
- Institute of Chemistry, Universidade Estadual de Campinas, Caixa Postal 6154, 13083-970, Campinas, SP, Brazil
| | - Cristiane A. Silva
- Institute of Chemistry, Universidade Estadual de Campinas, Caixa Postal 6154, 13083-970, Campinas, SP, Brazil
| | - Camila A. Rezende
- Institute of Chemistry, Universidade Estadual de Campinas, Caixa Postal 6154, 13083-970, Campinas, SP, Brazil
| | - Fernando Galembeck
- Institute of Chemistry, Universidade Estadual de Campinas, Caixa Postal 6154, 13083-970, Campinas, SP, Brazil
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32
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Sanii B, Parikh AN. Patterning Fluid and Elastomeric Surfaces Using Short-Wavelength UV Radiation and Photogenerated Reactive Oxygen Species. Annu Rev Phys Chem 2008; 59:411-32. [DOI: 10.1146/annurev.physchem.58.032806.104644] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Babak Sanii
- Department of Applied Science, University of California, Davis, California 95616;
| | - Atul N. Parikh
- Department of Applied Science, University of California, Davis, California 95616;
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33
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Oh J, Matsumoto T, Nakamura J. Photocoupling of Methane in Water Vapor to Saturated Hydrocarbons. Catal Letters 2008. [DOI: 10.1007/s10562-008-9477-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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34
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Lorenz M, Schiewek R, Brockmann KJ, Schmitz OJ, Gäb S, Benter T. The distribution of ion acceptance in atmospheric pressure ion sources: spatially resolved APLI measurements. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2008; 19:400-410. [PMID: 18187335 DOI: 10.1016/j.jasms.2007.11.021] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2007] [Revised: 11/27/2007] [Accepted: 11/27/2007] [Indexed: 05/25/2023]
Abstract
It is demonstrated that spatially resolved mass selected analysis using atmospheric pressure laser ionization mass spectrometry (APLI MS) represents a new powerful tool for mechanistic studies of ion-molecule chemistry occurring within atmospheric pressure (AP) ion sources as well as for evaluation and optimization of ion source performance. A focused low-energy UV laser beam is positioned computer controlled orthogonally on a two-dimensional grid in the ion source enclosure. Resonance enhanced multiphoton ionization (REMPI) of selected analytes occurs only within the confined volume of the laser beam. Depending on the experimental conditions and the reactivity of the primary photo-generated ions, specific signal patterns become visible after data treatment, as visualized in, e.g., contour or pseudo-color plots. The resulting spatial dependence of sensitivity is defined in this context as the distribution of ion acceptance (DIA) of the source/analyzer combination. This approach provides a much more detailed analysis of the diverse processes occurring in AP ion sources compared with conventional bulk signal response measurements.
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Affiliation(s)
- Matthias Lorenz
- Department of Chemistry, University of Wuppertal, Wuppertal, Germany
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35
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Adam T, Zimmermann R. Determination of single photon ionization cross sections for quantitative analysis of complex organic mixtures. Anal Bioanal Chem 2007; 389:1941-51. [PMID: 17874081 DOI: 10.1007/s00216-007-1571-x] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2007] [Revised: 07/26/2007] [Accepted: 08/20/2007] [Indexed: 10/22/2022]
Abstract
Soft single photon ionization (SPI)-time-of-flight mass spectrometry (TOFMS) is well suited for fast and comprehensive analysis of complex organic gas mixtures, which has been demonstrated in various applications. This work describes a calibration scheme for SPI, which enables quantification of a large number of compounds by only calibrating one compound of choice, in this case benzene. Photoionization cross sections of 22 substances were determined and related to the yield of benzene. These substances included six alkanes (pentane, hexane, heptane, octane, nonane, decane), three alkenes (propene, butane, pentene), two alkynes (propyne, butyne), two dienes (butadiene, isoprene), five monoaromatic species (benzene, toluene, xylene, styrene, monochlorobenzene) and NO. The cross sections of organic compounds differ by about one order of magnitude but the photoionization properties of compounds belonging to one compound class are rather similar. Therefore, the scheme can also be used for an approximate quantification of compound classes. This is demonstrated by a fast characterization and pattern recognition of two gasoline samples with different origins (Germany and South Africa) and a diesel sample (Germany). The on-line capability of the technique and the scheme is demonstrated by quantitatively monitoring and comparing the cold engine start of four vehicles: a gasoline passenger car, a diesel van, a motorbike and a two-stroke scooter.
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Affiliation(s)
- Thomas Adam
- Analytical Chemistry, Institute of Physics, University of Augsburg, 86159 Augsburg, Germany
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36
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Short LC, Cai SS, Syage JA. APPI-MS: effects of mobile phases and VUV lamps on the detection of PAH compounds. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2007; 18:589-99. [PMID: 17188507 PMCID: PMC2709839 DOI: 10.1016/j.jasms.2006.11.004] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2006] [Revised: 11/02/2006] [Accepted: 11/03/2006] [Indexed: 05/13/2023]
Abstract
The technique of atmospheric pressure photoionization (APPI) has several advantages over electrospray ionization (ESI) and atmospheric pressure chemical ionization (APCI), including efficient ionization of nonpolar or low charge affinity compounds, reduced susceptibility to ion suppression, high sensitivity, and large linear dynamic range. These benefits are greatest at low flow rates (i.e.,
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37
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Velasco AM, Pitarch-Ruiz J, Sánchez de Merás AMJ, Sánchez-Marín J, Martin I. Lower Rydberg series of methane: A combined coupled cluster linear response and molecular quantum defect orbital calculation. J Chem Phys 2006; 124:124313. [PMID: 16599680 DOI: 10.1063/1.2179069] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Vertical excitation energies as well as related absolute photoabsorption oscillator strength data are very scarce in the literature for methane. In this study, we have characterized the three existing series of low-lying Rydberg states of CH4 by computing coupled cluster linear response (CCLR) vertical excitation energies together with oscillator strengths in the molecular-adapted quantum defect orbital formalism from a distorted Cs geometry selected on the basis of outer valence green function calculations. The present work provides a wide range of data of excitation energies and absolute oscillator strengths which correspond to the Rydberg series converging to the three lower ionization potential values of the distorted methane molecule, in energy regions for which experimentally measured data appear to be unavailable.
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Affiliation(s)
- A M Velasco
- Departamento de Química Fisica y Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid, 47005 Valladolid, Spain
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38
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Liu X, Shemansky DE. Analysis of electron impact ionization properties of methane. ACTA ACUST UNITED AC 2006. [DOI: 10.1029/2005ja011454] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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39
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Shemansky DE, Stewart AIF, West RA, Esposito LW, Hallett JT, Liu X. The Cassini UVIS Stellar Probe of the Titan Atmosphere. Science 2005; 308:978-82. [PMID: 15890872 DOI: 10.1126/science.1111790] [Citation(s) in RCA: 116] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
The Cassini Ultraviolet Imaging Spectrometer (UVIS) observed the extinction of photons from two stars by the atmosphere of Titan during the Titan flyby. Six species were identified and measured: methane, acetylene, ethylene, ethane, diacetylene, and hydrogen cyanide. The observations cover altitudes from 450 to 1600 kilometers above the surface. A mesopause is inferred from extraction of the temperature structure of methane, located at 615 km with a temperature minimum of 114 kelvin. The asymptotic kinetic temperature at the top of the atmosphere determined from this experiment is 151 kelvin. The higher order hydrocarbons and hydrogen cyanide peak sharply in abundance and are undetectable below altitudes ranging from 750 to 600 km, leaving methane as the only identifiable carbonaceous molecule in this experiment below 600 km.
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Affiliation(s)
- Donald E Shemansky
- Department of Aerospace Engineering, University of Southern California, University Park, Los Angeles, CA 90089, USA.
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40
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Ye T, McArthur EA, Borguet E. Mechanism of UV Photoreactivity of Alkylsiloxane Self-Assembled Monolayers. J Phys Chem B 2005; 109:9927-38. [PMID: 16852200 DOI: 10.1021/jp0474273] [Citation(s) in RCA: 58] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
A molecular level understanding of the photoreactivity of self-assembled monolayers (SAMs) becomes increasingly important as the spatial resolution starts to be limited by the size of the resist and the spatial extent of the photochemical reactions in photoresist micropatterning. To this end, a number of surface characterization techniques were combined to understand the reactive agents, reactive sites, kinetics, and reaction pathways in the UV photoreactivity of octadecylsiloxane (ODS) SAMs. Quantitative analysis of our results provides evidence that ground state atomic oxygen is the primary reactive agent for the UV degradation of ODS SAMs. UV degradation, which follows zero-order kinetics, results in the scission of alkyl chains instead of the siloxane headgroups. Our results suggest that the top of the ODS SAMs is the preferential reactive site. Using a novel, highly surface sensitive technique, fluorescence labeling of surface species, we identified the presence of submonolayer quantities chemical functional groups formed by the UV degradation. These groups are intermediates in a proposed mechanism based on hydrogen abstraction.
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Affiliation(s)
- Tao Ye
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, USA
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41
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Wilson EH. Current state of modeling the photochemistry of Titan's mutually dependent atmosphere and ionosphere. ACTA ACUST UNITED AC 2004. [DOI: 10.1029/2003je002181] [Citation(s) in RCA: 285] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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42
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Stener M, Fronzoni G, Toffoli D, Decleva P. Time dependent density functional photoionization of CH4, NH3, H2O and HF. Chem Phys 2002. [DOI: 10.1016/s0301-0104(02)00726-7] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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43
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Olney TN, Cann N, Cooper G, Brion C. Absolute scale determination for photoabsorption spectra and the calculation of molecular properties using dipole sum-rules. Chem Phys 1997. [DOI: 10.1016/s0301-0104(97)00145-6] [Citation(s) in RCA: 260] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Au JW, Cooper G, Burton GR, Brion C. An evaluation of atomic and molecular mixture rules and group additivity concepts for the estimation of radiation absorption by long-chained, saturated hydrocarbons at vacuum UV and soft X-ray energies. Chem Phys 1994. [DOI: 10.1016/0301-0104(94)89013-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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The electronic absorption spectrum of NH3 in the valence shell discrete and continuum regions. Absolute oscillator strengths for photoabsorption (5–200 eV). Chem Phys 1993. [DOI: 10.1016/0301-0104(93)80191-b] [Citation(s) in RCA: 71] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Mitsuke K, Hattori H, Yoshida H. Ion‐pair formation from saturated hydrocarbons through photoexcitation of an inner‐valence electron. J Chem Phys 1993. [DOI: 10.1063/1.465856] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Au JW, Cooper G, Brion C. The molecular and dissociative photoionization of ethane, propane, and n-butane: absolute oscillator strengths (10–80 eV) and breakdown pathways. Chem Phys 1993. [DOI: 10.1016/0301-0104(93)80143-w] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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