The crustacean model Parhyale hawaiensis

Designing and applying a methodology to assess sperm cell viability and DNA damage in a model amphipod

Sperm quality is defined as the sperm cell ability to successfully fertilize eggs and allow normal embryo development⁠. Few studies explore sperm quality using aquatic invertebrates. Parhyale hawaiensis is a marine amphipod with a circumtropical distribution and considered a model for evolution, development, and ecotoxicological studies. We aimed to develop a methodology to collect sperm cells of P. hawaiensis and evaluate their viability and DNA damage (comet assay). We directly exposed the sperm cells to different mutagenic agents to optimize/develop the protocols. Then, as a proof of concept, we exposed the males to mutagenic compounds (EMS, benzo[a]pyrene (BaP), azo and anthraquinone dyes) at non-lethal concentrations verified by the proposed viability test and analyzed their sperm cells for DNA damage (comet assay). Organisms exposed to EMS presented a clear concentration response in the DNA damage response. We also showed that BaP was able to induce a statistically significant increase in DNA damage of the sperm cells. For the two dyes, although DNA damage increased, statistically differences were not observed. We believe we successfully developed a test to detect genotoxicity of chemicals in sperm cells using an invertebrate model. The protocol for sperm cell viability needs to be further explored with different chemicals to verify its utility as a toxicity endpoint. The developed genotoxicity test has the advantages to employ organisms that are easily cultivated in reduced space, use simple laboratory resources and reduced amount of material and reagents. Positive responses with this model could be used to disclose new germ cell mutagen candidates which could be further confirmed in vertebrates' systems.

Developing behavioural ecotoxicology assessment methods in the tropical marine amphipod, Parhyale hawaiensis: A study with benzo[a]pyrene (BaP)

Toxicant-induced behavioural changes provide important insights into environmental toxicity, particularly in vulnerable tropical marine habitats. However, ecotoxicological knowledge of organisms in these environments is insufficient. We aimed to develop innovative and cost-effective ecotoxicology methods using Parhyale hawaiensis as a tropical model organism. Adult P. hawaiensis were exposed to aqueous benzo[a]pyrene (BaP) (2 μM) and dietary BaP (50, 250, or 1250 μg BaP/g diet). Survival (24 to 96 h) and behavioural responses (21d) to foraging, reproduction, and predator avoidance were studied. Aqueous and dietary exposures to benzo[a]pyrene (BaP) did not affect survival but induced significant immobility with effective concentration (EC50 ± SE, 96 h at 11.89 ± 1.19 μM). Relative to the control group, aqueous exposure to 2 μM and dietary exposure to 250 and 1250 μg BaP/g feed resulted in statistically significant behavioural changes. These included a 55-76 % reduction in feeding rates, 133 % increase in chemosensation time, 60-122 % drop in moulting frequency, 200 % delay in precopulatory activity, 50-83 % decrease in geotactic activity, and 300-400 % increase in phototactic activity (all significant at p ≤ 0.05). The methods developed in this study are cost-effective, sensitive, and readily integrated into other endpoint analyses, reinforcing the potential of P. hawaiensis as a tropical ecotoxicology model for detecting toxicant-induced behavioural responses and enhancing marine risk assessments.

Explosive regeneration and anamorphic development of legs in the house centipede Scutigera coleoptrata

BACKGROUND

Regenerating legs is advantageous for arthropods as their appendages exhibit crucial functional specializations. Many arthropods possess a 'preferred breakage point', where the appendage is most likely to break and where regeneration likely to occur, however, different taxa exhibit different levels of regenerative potential. Centipede appendage regeneration is categorized as 'progressive' or 'explosive'. In the later, the appendage is fully regenerated after one molt. This term was used for house centipedes that frequently lose their long legs. We chose Scutigera coleoptrata as a model to comprehensively investigate the process of leg appendotomy and regeneration as well as compare it with leg development in anamorphic instars.

RESULTS

The trochanter exhibits a preferred breakage point. Internally, it houses a three-layered diaphragm that effectively seals the lumen. In case of leg loss, the wound is quickly sealed. The epidermis detaches from the cuticle and muscles of the coxa get compacted, giving sufficient space for the regenerating leg. A blastema forms and the leg then grows in a coiled manner. The regenerating leg is innervated and syncytial muscles form. If the leg is lost in an early intermolt phase, progression of regeneration is slower than when a specimen is closer to the next molt. Instars of house centipedes can simultaneously develop and regenerate legs. The legs develop laterally on the posterior segments under the cuticle. As opposed to regeneration, the progression of leg development always follows the same temporal pattern throughout the entire intermolt phase.

CONCLUSION

Several factors are of major significance in house centipede leg regeneration. First, the ease with which they lose legs: the diaphragm represents an efficient tool for appendotomy. Moreover, the functional extension of the coxa provides space for a leg to be regenerated in. Lastly, the genetic predisposition allows them to regenerate legs within one molting cycle. This "package" is unique among land arthropods, and to this degree rare in marine taxa. Furthermore, observing leg regeneration and anamorphic leg development in parallel suggest that regeneration is most likely an epiphenomenon of development, and the differences are a requirement for the novel context in which re-development occurs.

Microplastics impair the reproductive behavior and life history traits of the amphipod Parhyale hawaiensis

We investigated the distribution and effects of waterborne microplastic (MP) (polyethylene microspheres, 53-63 um) on the emergent model for ecotoxicology, the amphipod Parhyale hawaiensis, during 30 days of exposure. The following life-history traits were measured: (1) survival, (2) specific growth rate (SGR), (3) reproductive performance (precopulatory pairing behavior, fecundity, and time to release neonates), (4) molting frequency, (5) F1 newborn offspring survival and (6) MP bioaccumulation. No significant mortality or molt was seen in any of the treatments. MP caused a reduction in SGR, being more pronounced in females. The time for precopulatory pairing was 3-fold longer in amphipods exposed to MP. Fecundity decreased by 50 %, and the time to release juveniles was 6.7 days longer for amphipods exposed to MP. Finally, neonate survival decreased by 80 % after ten days of release. MP disrupts the reproductive mechanisms and triggers adverse effects on life history traits in P. hawaiensis.

Clocks at sea: the genome-editing tide is rising

The coastline is a particularly challenging environment for its inhabitants. Not only do they have to cope with the solar day and the passing of seasons, but they must also deal with tides. In addition, many marine species track the phase of the moon, especially to coordinate reproduction. Marine animals show remarkable behavioral and physiological adaptability, using biological clocks to anticipate specific environmental cycles. Presently, we lack a basic understanding of the molecular mechanisms underlying circatidal and circalunar clocks. Recent advances in genome engineering and the development of genetically tractable marine model organisms are transforming how we study these timekeeping mechanisms and opening a novel era in marine chronobiology.

Distinct gene expression dynamics in developing and regenerating crustacean limbs

Regenerating animals have the ability to reproduce body parts that were originally made in the embryo and subsequently lost due to injury. Understanding whether regeneration mirrors development is an open question in most regenerative species. Here, we take a transcriptomics approach to examine whether leg regeneration shows similar temporal patterns of gene expression as leg development in the embryo, in the crustacean Parhyale hawaiensis. We find that leg development in the embryo shows stereotypic temporal patterns of gene expression. In contrast, the dynamics of gene expression during leg regeneration show a higher degree of variation related to the physiology of individual animals. A major driver of this variation is the molting cycle. We dissect the transcriptional signals of individual physiology and regeneration to obtain clearer temporal signals marking distinct phases of leg regeneration. Comparing the transcriptional dynamics of development and regeneration we find that, although the two processes use similar sets of genes, the temporal patterns in which these genes are deployed are different and cannot be systematically aligned.

Identification and classification of cis-regulatory elements in the amphipod crustacean Parhyale hawaiensis

Emerging research organisms enable the study of biology that cannot be addressed using classical 'model' organisms. New data resources can accelerate research in such animals. Here, we present new functional genomic resources for the amphipod crustacean Parhyale hawaiensis, facilitating the exploration of gene regulatory evolution using this emerging research organism. We use Omni-ATAC-seq to identify accessible chromatin genome-wide across a broad time course of Parhyale embryonic development. This time course encompasses many major morphological events, including segmentation, body regionalization, gut morphogenesis and limb development. In addition, we use short- and long-read RNA-seq to generate an improved Parhyale genome annotation, enabling deeper classification of identified regulatory elements. We discover differential accessibility, predict nucleosome positioning, infer transcription factor binding, cluster peaks based on accessibility dynamics, classify biological functions and correlate gene expression with accessibility. Using a Minos transposase reporter system, we demonstrate the potential to identify novel regulatory elements using this approach. This work provides a platform for the identification of novel developmental regulatory elements in Parhyale, and offers a framework for performing such experiments in other emerging research organisms.

My road to the ants: A model clade for eco-evo-devo

This chapter is the story of how I pioneered ants as a system for studying eco-evo-devo, a field that integrates developmental biology with ecology and evolutionary biology. One aim of eco-evo-devo is to understand how the interactions between genes and their environments during development facilitates the origin and evolution of novel phenotypes. In a series of six parts, I review some of the key discoveries from my lab on how novel worker caste systems in ants--soldiers and supersoldiers--originated and evolved. I also discuss some of the ideas that emerged from these discoveries, including the role that polyphenisms, hidden developmental potentials, and rudimentary organs play in facilitating developmental and evolutionary change. As superorganisms, I argue that ants are uniquely positioned to reveal types of variation that are often difficult to observe in nature. In doing so, they have the potential to transform our view of biology and provide new perspectives in medicine, agriculture, and biodiversity conservation. With my story I hope to inspire the next generation of biologists to continue exploring the unknown regions of phenotypic space to solve some of our most pressing societal challenges.