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Wang C, Wang R, Meng L, Chang W, Chen J, Liu C, Song Y, Ding N, Gao P. A laboratory study of the increasing competitiveness of Karenia mikimotoi under rising CO 2 scenario. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 926:171688. [PMID: 38492606 DOI: 10.1016/j.scitotenv.2024.171688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2023] [Revised: 12/07/2023] [Accepted: 03/11/2024] [Indexed: 03/18/2024]
Abstract
Ocean acidification (OA) driven by elevated carbon dioxide (CO2) levels is expected to disturb marine ecological processes, including the formation and control of harmful algal blooms (HABs). In this study, the effects of rising CO2 on the allelopathic effects of macroalgae Ulva pertusa to a toxic dinoflagellate Karenia mikimotoi were investigated. It was found that high level of CO2 (1000 ppmv) promoted the competitive growth of K. mikimotoi compared to the group of present ambient CO2 level (420ppmv), with the number of algal cell increased from 32.2 × 104 cells/mL to 36.75 × 104 cells/mL after 96 h mono-culture. Additionally, rising CO2 level weakened allelopathic effects of U. pertusa on K. mikimotoi, as demonstrated by the decreased inhibition rate (50.6 % under the original condition VS 34.3 % under the acidified condition after 96 h co-culture) and the decreased reactive oxygen species (ROS) level, malondialdehyde (MDA) content, antioxidant enzymes activity (superoxide dismutase (SOD), peroxidase (POD), glutathione peroxidase (GPX), glutathione reductase (GR) and catalase (CAT) and non-enzymatic antioxidants (glutathione (GSH) and ascorbic acid (ascorbate, vitamin C). Indicators for cell apoptosis of K. mikimotoi including decreased caspase-3 and -9 protease activity were observed when the co-cultured systems were under rising CO2 exposure. Furthermore, high CO2 level disturbed fatty acid synthesis in U. pertusa and significantly decreased the contents of fatty acids with allelopathy, resulting in the allelopathy weakening of U. pertusa. Collectively, rising CO2 level promoted the growth of K. mikimotoi and weakened allelopathic effects of U. pertusa on K. mikimotoi, indicating the increased difficulties in controlling K. mikimotoi using macroalgae in the future.
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Affiliation(s)
- Chao Wang
- College of Life Sciences, Qufu Normal University, Qufu, Shandong 273165, PR China
| | - Renjun Wang
- College of Life Sciences, Qufu Normal University, Qufu, Shandong 273165, PR China.
| | - Lingna Meng
- College of Life Sciences, Qufu Normal University, Qufu, Shandong 273165, PR China
| | - Wenjing Chang
- College of Life Sciences, Qufu Normal University, Qufu, Shandong 273165, PR China
| | - Junfeng Chen
- College of Life Sciences, Qufu Normal University, Qufu, Shandong 273165, PR China
| | - Chunchen Liu
- College of Life Sciences, Qufu Normal University, Qufu, Shandong 273165, PR China
| | - Yuhao Song
- College of Life Sciences, Qufu Normal University, Qufu, Shandong 273165, PR China
| | - Ning Ding
- College of Life Sciences, Qufu Normal University, Qufu, Shandong 273165, PR China
| | - Peike Gao
- College of Life Sciences, Qufu Normal University, Qufu, Shandong 273165, PR China.
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Sanchez-Arcos C, Paris D, Mazzella V, Mutalipassi M, Costantini M, Buia MC, von Elert E, Cutignano A, Zupo V. Responses of the Macroalga Ulva prolifera Müller to Ocean Acidification Revealed by Complementary NMR- and MS-Based Omics Approaches. Mar Drugs 2022; 20:md20120743. [PMID: 36547890 PMCID: PMC9783899 DOI: 10.3390/md20120743] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2022] [Revised: 11/21/2022] [Accepted: 11/23/2022] [Indexed: 11/29/2022] Open
Abstract
Ocean acidification (OA) is a dramatic perturbation of seawater environments due to increasing anthropogenic emissions of CO2. Several studies indicated that OA frequently induces marine biota stress and a reduction of biodiversity. Here, we adopted the macroalga Ulva prolifera as a model and applied a complementary multi-omics approach to investigate the metabolic profiles under normal and acidified conditions. Our results show that U. prolifera grows at higher rates in acidified environments. Consistently, we observed lower sucrose and phosphocreatine concentrations in response to a higher demand of energy for growth and a higher availability of essential amino acids, likely related to increased protein biosynthesis. In addition, pathways leading to signaling and deterrent compounds appeared perturbed. Finally, a remarkable shift was observed here for the first time in the fatty acid composition of triglycerides, with a decrease in the relative abundance of PUFAs towards an appreciable increase of palmitic acid, thus suggesting a remodeling in lipid biosynthesis. Overall, our studies revealed modulation of several biosynthetic pathways under OA conditions in which, besides the possible effects on the marine ecosystem, the metabolic changes of the alga should be taken into account considering its potential nutraceutical applications.
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Affiliation(s)
- Carlos Sanchez-Arcos
- Institute for Zoology, Cologne Biocenter University of Cologne, 50674 Köln, Germany
| | - Debora Paris
- Consiglio Nazionale delle Ricerche (CNR), Istituto di Chimica Biomolecolare (ICB), 80078 Pozzuoli, Italy
| | - Valerio Mazzella
- Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Ischia Marine Center, 80077 Ischia, Italy
| | - Mirko Mutalipassi
- Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Calabria Marine Centre, 87071 Amendolara, Italy
| | - Maria Costantini
- Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, 80121 Napoli, Italy
| | - Maria Cristina Buia
- Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Ischia Marine Center, 80077 Ischia, Italy
| | - Eric von Elert
- Institute for Zoology, Cologne Biocenter University of Cologne, 50674 Köln, Germany
| | - Adele Cutignano
- Consiglio Nazionale delle Ricerche (CNR), Istituto di Chimica Biomolecolare (ICB), 80078 Pozzuoli, Italy
- Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, 80121 Napoli, Italy
- Correspondence: (A.C.); (V.Z.); Tel.: +39-081-8675313 (A.C.); +39-081-5833503 (V.Z.)
| | - Valerio Zupo
- Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, 80077 Ischia, Italy
- Correspondence: (A.C.); (V.Z.); Tel.: +39-081-8675313 (A.C.); +39-081-5833503 (V.Z.)
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Boysen AK, Durham BP, Kumler W, Key RS, Heal KR, Carlson L, Groussman RD, Armbrust EV, Ingalls AE. Glycine betaine uptake and metabolism in marine microbial communities. Environ Microbiol 2022; 24:2380-2403. [PMID: 35466501 PMCID: PMC9321204 DOI: 10.1111/1462-2920.16020] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Revised: 03/24/2022] [Accepted: 04/15/2022] [Indexed: 11/27/2022]
Abstract
Glycine betaine (GBT) is a compatible solute in high concentrations in marine microorganisms. As a component of labile organic matter, GBT has complex biochemical potential as a substrate for microbial use that is unconstrained in the environment. Here we determine the uptake kinetics and metabolic fate of GBT in two natural microbial communities in the North Pacific characterized by different nitrate concentrations. Dissolved GBT had maximum uptake rates of 0.36 and 0.56 nM h−1 with half‐saturation constants of 79 and 11 nM in the high nitrate and low nitrate stations respectively. During multiday incubations, most GBT taken into cells was retained as a compatible solute. Stable isotopes derived from the added GBT were also observed in other metabolites, including choline, carnitine and sarcosine, suggesting that GBT was used for biosynthesis and for catabolism to pyruvate and ammonium. Where nitrate was scarce, GBT was primarily metabolized via demethylation to glycine. Gene transcript data were consistent with SAR11 using GBT as a source of methyl groups to fuel the methionine cycle. Where nitrate concentrations were higher, more GBT was partitioned for lipid biosynthesis by both bacteria and eukaryotic phytoplankton. Our data highlight unexpected metabolic pathways and potential routes of microbial metabolite exchange.
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Affiliation(s)
- Angela K Boysen
- School of Oceanography, University of Washington, Seattle, WA, 98195, USA
| | - Bryndan P Durham
- Department of Biology, Genetics Institute, University of Florida, Gainesville, Florida, 32610, USA
| | - William Kumler
- School of Oceanography, University of Washington, Seattle, WA, 98195, USA
| | - Rebecca S Key
- Department of Biology, Genetics Institute, University of Florida, Gainesville, Florida, 32610, USA
| | - Katherine R Heal
- School of Oceanography, University of Washington, Seattle, WA, 98195, USA
| | - Laura Carlson
- School of Oceanography, University of Washington, Seattle, WA, 98195, USA
| | - Ryan D Groussman
- School of Oceanography, University of Washington, Seattle, WA, 98195, USA
| | | | - Anitra E Ingalls
- School of Oceanography, University of Washington, Seattle, WA, 98195, USA
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Modelling Antifouling compounds of Macroalgal Holobionts in Current and Future pH Conditions. J Chem Ecol 2022; 48:455-473. [DOI: 10.1007/s10886-021-01340-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Revised: 11/29/2021] [Accepted: 12/10/2021] [Indexed: 10/19/2022]
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DeWeese KJ, Osborne MG. Understanding the metabolome and metagenome as extended phenotypes: The next frontier in macroalgae domestication and improvement. JOURNAL OF THE WORLD AQUACULTURE SOCIETY 2021; 52:1009-1030. [PMID: 34732977 PMCID: PMC8562568 DOI: 10.1111/jwas.12782] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Accepted: 02/25/2021] [Indexed: 06/01/2023]
Abstract
"Omics" techniques (including genomics, transcriptomics, metabolomics, proteomics, and metagenomics) have been employed with huge success in the improvement of agricultural crops. As marine aquaculture of macroalgae expands globally, biologists are working to domesticate species of macroalgae by applying these techniques tested in agriculture to wild macroalgae species. Metabolomics has revealed metabolites and pathways that influence agriculturally relevant traits in crops, allowing for informed crop crossing schemes and genomic improvement strategies that would be pivotal to inform selection on macroalgae for domestication. Advances in metagenomics have improved understanding of host-symbiont interactions and the potential for microbial organisms to improve crop outcomes. There is much room in the field of macroalgal biology for further research toward improvement of macroalgae cultivars in aquaculture using metabolomic and metagenomic analyses. To this end, this review discusses the application and necessary expansion of the omics tool kit for macroalgae domestication as we move to enhance seaweed farming worldwide.
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Affiliation(s)
- Kelly J DeWeese
- Molecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, California, Los Angeles
| | - Melisa G Osborne
- Molecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, California, Los Angeles
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Zhang LJ, Qian L, Ding LY, Wang L, Wong MH, Tao HC. Ecological and toxicological assessments of anthropogenic contaminants based on environmental metabolomics. ENVIRONMENTAL SCIENCE AND ECOTECHNOLOGY 2021; 5:100081. [PMID: 36158612 PMCID: PMC9488080 DOI: 10.1016/j.ese.2021.100081] [Citation(s) in RCA: 34] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 01/06/2021] [Accepted: 01/23/2021] [Indexed: 05/02/2023]
Abstract
There has long been a great concern with growing anthropogenic contaminants and their ecological and toxicological effects on living organisms and the surrounding environment for decades. Metabolomics, a functional readout of cellular activity, can capture organismal responses to various contaminant-related stressors, acquiring direct signatures to illustrate the environmental behaviours of anthropogenic contaminants better. This review entails the application of metabolomics to profile metabolic responses of environmental organisms, e.g. animals (rodents, fish, crustacean and earthworms) and microorganisms (bacteria, yeast and microalgae) to different anthropogenic contaminants, including heavy metals, nanomaterials, pesticides, pharmaceutical and personal products, persistent organic pollutants, and assesses their ecotoxicological impacts with regard to literature published in the recent five years. Contaminant-induced metabolism alteration and up/down-regulation of metabolic pathways are revealed in typical organisms. The obtained insights of variations in global metabolism provide a distinct understanding of how anthropogenic contaminants exert influences on specific metabolic pathways on living organisms. Thus with a novel ecotechnique of environmental metabolomics, risk assessments of anthropogenic contaminants are profoundly demonstrated.
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Affiliation(s)
- Li-Juan Zhang
- Key Laboratory for Heavy Metal Pollution Control and Reutilization, School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, Guangdong, 518055, China
| | - Lu Qian
- Key Laboratory for Heavy Metal Pollution Control and Reutilization, School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, Guangdong, 518055, China
| | - Ling-Yun Ding
- Key Laboratory for Heavy Metal Pollution Control and Reutilization, School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, Guangdong, 518055, China
| | - Lei Wang
- Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing, 100871, China
| | - Ming Hung Wong
- Consortium on Health, Environment, Education and Research (CHEER), Department of Science and Environmental Studies, The Education University of Hong Kong, Tai Po, Hong Kong, China
| | - Hu-Chun Tao
- Key Laboratory for Heavy Metal Pollution Control and Reutilization, School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen, Guangdong, 518055, China
- Corresponding author.
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Chemically Mediated Microbial "Gardening" Capacity of a Seaweed Holobiont Is Dynamic. Microorganisms 2020; 8:microorganisms8121893. [PMID: 33265911 PMCID: PMC7760634 DOI: 10.3390/microorganisms8121893] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2020] [Revised: 11/14/2020] [Accepted: 11/16/2020] [Indexed: 01/22/2023] Open
Abstract
Terrestrial plants are known to “garden” the microbiota of their rhizosphere via released metabolites (that can attract beneficial microbes and deter pathogenic microbes). Such a “gardening” capacity is also known to be dynamic in plants. Although microbial “gardening” has been recently demonstrated for seaweeds, we do not know whether this capacity is a dynamic property in any aquatic flora like in terrestrial plants. Here, we tested the dynamic microbial “gardening” capacity of seaweeds using the model invasive red seaweed Agarophyton vermiculophyllum. Following an initial extraction of surface-associated metabolites (immediately after field collection), we conducted a long-term mesocosm experiment for 5 months to test the effect of two different salinities (low = 8.5 and medium = 16.5) on the microbial “gardening” capacity of the alga over time. We tested “gardening” capacity of A. vermiculophyllum originating from two different salinity levels (after 5 months treatments) in settlement assays against three disease causing pathogenic bacteria and seven protective bacteria. We also compared the capacity of the alga with field-collected samples. Abiotic factors like low salinity significantly increased the capacity of the alga to deter colonization by pathogenic bacteria while medium salinity significantly decreased the capacity of the alga over time when compared to field-collected samples. However, capacity to attract beneficial bacteria significantly decreased at both tested salinity levels when compared to field-collected samples. Dynamic microbial “gardening” capacity of a seaweed to attract beneficial bacteria and deter pathogenic bacteria is demonstrated for the first time. Such a dynamic capacity as found in the current study could also be applicable to other aquatic host–microbe interactions. Our results may provide an attractive direction of research towards manipulation of salinity and other abiotic factors leading to better defended A. vermiculophyllum towards pathogenic bacteria thereby enhancing sustained production of healthy A. vermiculophyllum in farms.
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Narvarte BCV, Nelson WA, Roleda MY. Inorganic carbon utilization of tropical calcifying macroalgae and the impacts of intensive mariculture-derived coastal acidification on the physiological performance of the rhodolith Sporolithon sp. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2020; 266:115344. [PMID: 32829170 DOI: 10.1016/j.envpol.2020.115344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2020] [Revised: 07/10/2020] [Accepted: 07/28/2020] [Indexed: 06/11/2023]
Abstract
Fish farming in coastal areas has become an important source of food to support the world's increasing population. However, intensive and unregulated mariculture activities have contributed to changing seawater carbonate chemistry through the production of high levels of respiratory CO2. This additional CO2, i.e. in addition to atmospheric inputs, intensifies the effects of global ocean acidification resulting in localized extreme low pH levels. Marine calcifying macroalgae are susceptible to such changes due to their CaCO3 skeleton. Their physiological response to CO2-driven acidification is dependent on their carbon physiology. In this study, we used the pH drift experiment to determine the capability of 9 calcifying macroalgae to use one or more inorganic carbon (Ci) species. From the 9 species, we selected the rhodolith Sporolithon sp. as a model organism to investigate the long-term effects of extreme low pH on the physiology and biochemistry of calcifying macroalgae. Samples were incubated under two pH treatments (pH 7.9 = ambient and pH 7.5 = extreme acidification) in a temperature-controlled (26 ± 0.02 °C) room provided with saturating light intensity (98.3 ± 2.50 μmol photons m-2 s-1). After the experimental treatment period (40 d), growth rate, calcification rate, nutrient uptake rate, organic content, skeletal CO3-2, pigments, and tissue C, N and P of Sporolithon samples were compared. The pH drift experiment revealed species-specific Ci use mechanisms, even between congenerics, among tropical calcifying macroalgae. Furthermore, long-term extreme low pH significantly reduced the growth rate, calcification rate and skeletal CO3-2 content by 79%, 66% and 18%, respectively. On the other hand, nutrient uptake rates, organic matter, pigments and tissue C, N and P were not affected by the low pH treatments. Our results suggest that the rhodolith Sporolithon sp. is susceptible to the negative effects of extreme low pH resulting from intensive mariculture-driven coastal acidification.
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Affiliation(s)
- Bienson Ceasar V Narvarte
- The Marine Science Institute, University of the Philippines, Diliman 1101, Quezon City, Philippines.
| | - Wendy A Nelson
- National Institute of Water & Atmospheric Research Ltd (NIWA), 301 Evans Bay Parade, Greta Point, Wellington, New Zealand
| | - Michael Y Roleda
- The Marine Science Institute, University of the Philippines, Diliman 1101, Quezon City, Philippines
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