Zebrafish z-otu, a novel Otu and Tudor domain-containing gene, is expressed in early stages of oogenesis and embryogenesis

Germ plasm dynamics during oogenesis and early embryonic development in Xenopus and zebrafish

Specification of the germline and its segregation from the soma mark one of the most crucial events in the lifetime of an organism. In different organisms, this specification can occur through either inheritance or inductive mechanisms. In species such as Xenopus and zebrafish, the specification of primordial germ cells relies on the inheritance of maternal germline determinants that are synthesized and sequestered in the germ plasm during oogenesis. In this review, we discuss the formation of the germ plasm, how germline determinants are recruited into the germ plasm during oogenesis, and the dynamics of the germ plasm during oogenesis and early embryonic development.

Short-term exposure to benzo[a]pyrene disrupts reproductive endocrine status in the swimming crab Portunus trituberculatus

The purpose of this study was to investigate the effect of benzo[a]pyrene (B[a]P) on reproductive endocrine disruption and explore the preliminary mechanisms in crustaceans. In this study, sexually mature female Portunus trituberculatus were exposed to 0, 0.1, 0.5 and 2.5 μg/L B[a]P for 10 days. The following were investigated: (1) Gonadosomatic Index (GSI) and oocyte diameter, (2) steroid concentrations in ovary and hemolymph, and (3) mRNA levels of genes involved in sex steroid synthesis (3β-HSD,17β-HSD) or reproduction (estrogen receptor (ER), OUT (Ovarian tumor gene) domain containing ubiquitin aldehyde-binding protein 1 (OTUB1), vitellogenin (VTG),vasa). B[a]P exposure caused significant reductions in the GSI and oocyte diameter in the crabs. Furthermore, 17β-estradiol (E2), testosterone (T) and progesterone (P) levels were inhibited significantly while 3β-HSD and 17β-HSD mRNA expressions were also decreased in a dose-dependent manner at day 10, which suggests that B[a]P can disrupt sex steroid levels through steroid synthesis pathways. In addition, high levels of B[a]P activated transcription of OTUB1 while suppressed ER and VTG expression, which indicates that exposure to waterborne B[a]P could interfere with ubiquitin-proteasome pathway and subsequently affect ER and ER-mediated gene expression. We also observed a reduction in vasa gene expression reflecting the negative effect of B[a]P on oocyte development in the molecular level. This study is the first to demonstrate in vivo B[a]P toxicity in the reproductive endocrine system of female P. trituberculatus and provided a scientific basis of the decline in crustacean populations.

Gonad specific genes in Atlantic salmon (Salmon salar L.): characterization of tdrd7-2, dazl-2, piwil1 and tdrd1 genes

Atlantic salmon is a commercially important species. Understanding key processes in their life history, such as germ cell development is essential for further improvements within salmon farming. Since salmonids have undergone an additional whole genome duplication compared to many other fish species, they possess more gene paralogues. Therefore, data on gene expression and function from other species may not apply for salmon. Our aim was to study the spatial and tissue specific expression of genes known from model species to be essential for germ cell development, to identify germ cell specific factors in salmon. Based on homology with other species, selected genes were predicted in the salmon genome assembly. Gene expression was measured by PCR in a variety of juvenile salmon tissues. For genes expressed exclusively in gonads we measured the expression in the same tissues as well as in eggs, embryos and larvae by qPCR. Finally, we revealed the cellular localization of the gonad specific mRNAs by in situ hybridization (ISH). Several of the selected genes (tdrd7, cxcr4b and dazl), were found in more than one copy (indicated by a number following the gene name) in the salmon genome. Expression of tdrd7-2, dazl-2, piwil1 and tdrd1 was detected exclusively in the testis and ovary of juvenile salmon, and transcripts of tdrd7-2, dazl-2 and piwil1 were localized within male and female germ cells. While tdrd7-2, piwil1 and tdrd1 were expressed in unfertilized eggs and all embryo and larval stages measured, dazl-2 was expressed in unfertilized eggs and embryos until the onset of gastrulation. This study shows that several of the genes known from model species to be essential for germ cell development, display paralogues in salmon with dissimilar and similar expression patterns in comparison to other species. Transcripts of tdrd7-2, dazl-2, piwil1 and tdrd1 are detected exclusively in gonads of juveniles and are found among maternal RNA of eggs and subsequent embryos. This information is valuable for further studies aiming at understanding salmon germ cell development.

The vertebrate makorin ubiquitin ligase gene family has been shaped by large-scale duplication and retroposition from an ancestral gonad-specific, maternal-effect gene

BACKGROUND

Members of the makorin (mkrn) gene family encode RING/C3H zinc finger proteins with U3 ubiquitin ligase activity. Although these proteins have been described in a variety of eukaryotes such as plants, fungi, invertebrates and vertebrates including human, almost nothing is known about their structural and functional evolution.

RESULTS

Via partial sequencing of a testis cDNA library from the poeciliid fish Xiphophorus maculatus, we have identified a new member of the makorin gene family, that we called mkrn4. In addition to the already described mkrn1 and mkrn2, mkrn4 is the third example of a makorin gene present in both tetrapods and ray-finned fish. However, this gene was not detected in mouse and rat, suggesting its loss in the lineage leading to rodent murids. Mkrn2 and mkrn4 are located in large ancient duplicated regions in tetrapod and fish genomes, suggesting the possible involvement of ancestral vertebrate-specific genome duplication in the formation of these genes. Intriguingly, many mkrn1 and mkrn2 intronless retrocopies have been detected in mammals but not in other vertebrates, most of them corresponding to pseudogenes. The nature and number of zinc fingers were found to be conserved in Mkrn1 and Mkrn2 but much more variable in Mkrn4, with lineage-specific differences. RT-qPCR analysis demonstrated a highly gonad-biased expression pattern for makorin genes in medaka and zebrafish (ray-finned fishes) and amphibians, but a strong relaxation of this specificity in birds and mammals. All three mkrn genes were maternally expressed before zygotic genome activation in both medaka and zebrafish early embryos.

CONCLUSION

Our analysis demonstrates that the makorin gene family has evolved through large-scale duplication and subsequent lineage-specific retroposition-mediated duplications in vertebrates. From the three major vertebrate mkrn genes, mkrn4 shows the highest evolutionary dynamics, with lineage-specific loss of zinc fingers and even complete gene elimination from certain groups of vertebrates. Comparative expression analysis strongly suggests that the ancestral E3 ubiquitin ligase function of the single copy mkrn gene before duplication in vertebrates was gonad-specific, with maternal expression in early embryos.

Gα13 is closely related to hematopoiesis in zebrafish

Heterotrimeric guanine nucleotide-binding regulatory proteins (G proteins) function as signal transducers and control many different physiologic processes. G proteins can be grouped into four families: Gs, Gi, Gq and G12. Gα13 belongs to the G12 family. In zebrafish, there are two isoforms of Gα13: Gα13a and Gα13b. We show here that knockdown of Gα13b in zebrafish results in hematopoietic and angiogenic defects. The Gα13b morphants don't show complete loss of expression of gata1, pu.1 or flk until 35 hpf suggests that Gα13b is closely related to the development of hematopoietic cells. Further studies reveal that blood cells and vascular endothelial cells have undergone apoptosis through a p53-dependent pathway in Gα13b-depleted embryos. Injection of p53 morpholino could partially rescue the phenotype of Gα13b morphants. These data possibly demonstrate a new role for Gα13 in cell survival.

Identification and expression analysis of two zebrafish E2F5 genes during oogenesis and development

During the process of screening genes that are preferentially expressed in zebrafish germ cells, we isolated an E2F family member zE2F5b, which is a truncated isoform of zebrafish E2F5a. The E2F transcription factors are thought to play an essential role in cell cycle progression. Reverse transcription polymerase chain reaction and whole mount in situ hybridization analyses have demonstrated that both zE2F5a and zE2F5b mRNAs are predominantly expressed in stage I and II oocytes. In early development, the two zE2F5 transcripts are expressed by many parts of the embryo and are then restricted to the brain area. Interestingly, zE2F5b mRNA is detected later in the lens and optic tectum while zE2F5a mRNA is absent. Our data suggests that E2F5 may play important roles in zebrafish brain, eye and ovarian development.

A novel Otubain-like cysteine protease gene is preferentially expressed during somatic embryogenesis in Pinus radiata

OTUBAINS are a recently discovered family of cysteine proteases that participate in the ubiquitin pathway. These proteins were originally described in animal systems and are involved in removing the ubiquitin chain attached to a protein destined for degradation. In a cDNA-AFLP screen designed to identify genes that are expressed during early somatic embryogenesis in the conifer Pinus radiata, a fragment-derived transcript corresponding to an Otubain-like cysteine protease was identified. The full-length cDNA contained an 885 bp ORF encoding 294 amino acids, and was named PrOTUBAIN. The deduced protein showed high identity to other OTUBAINS and contained an OTU domain and a catalytic triad characteristic of cysteine proteases. The 3-D model of PrOTUBAIN showed significant similarity to human OTUBAIN2, suggesting that the plant protein may possess functions similar to that of the human protein. Real time PCR assays demonstrated that PrOTUBAIN is expressed in different tissues and that transcript are particularly abundant in embryogenic tissues. This is the first report of this class of protein in higher plants and the putative role of PrOTUBAIN is discussed.

Identification and characterization of TSAP, a novel gene specifically expressed in testis during spermatogenesis

Through in silico screens, we have identified many previously uncharacterized genes that display similar expression patterns as the mouse Dazl gene, a germ line-specific marker. Here, we report the identification and characterization of one of these novel genes. TSAP gene encodes a protein with 350 amino acids and contains five ankyrin repeats and a PEST sequence motif. Furthermore, we have generated an anti-TSAP antibody and have used three different approaches (RT-PCR, in situ hybridization, and immunohistochemistry) to investigate the expression profiles of TSAP mRNAs and proteins. TSAP is specifically expressed in testis, but not in other tissues such as ovary. Within the testis, TSAP is detected 10 days after birth and is mainly expressed in spermatocytes (ST) and later stage of germ cells, but not in spermatogonia (SG) or sertoli cells. Therefore, TSAP protein likely plays a role in spermatogenesis.