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For: Ellefsen KL, Lock JT, Settle B, Karsten CA, Parker I. Applications of FLIKA, a Python-based image processing and analysis platform, for studying local events of cellular calcium signaling. Biochim Biophys Acta Mol Cell Res 2019;1866:1171-9. [PMID: 30500432 DOI: 10.1016/j.bbamcr.2018.11.012] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2018] [Revised: 11/20/2018] [Accepted: 11/22/2018] [Indexed: 11/21/2022]
Number Cited by Other Article(s)
1
Bertaccini GA, Evans EL, Nourse JL, Dickinson GD, Liu G, Casanellas I, Seal S, Ly AT, Holt JR, Yan S, Hui EE, Panicker MM, Upadhyayula S, Parker I, Pathak MM. PIEZO1-HaloTag hiPSCs: Bridging Molecular, Cellular and Tissue Imaging. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.12.22.573117. [PMID: 38187535 PMCID: PMC10769387 DOI: 10.1101/2023.12.22.573117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2024]
2
Smith HA, Taylor CW. Dissociation of inositol 1,4,5-trisphosphate from IP3 receptors contributes to termination of Ca2+ puffs. J Biol Chem 2023;299:102871. [PMID: 36621623 PMCID: PMC9971896 DOI: 10.1016/j.jbc.2023.102871] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2022] [Revised: 12/23/2022] [Accepted: 12/26/2022] [Indexed: 01/07/2023]  Open
3
Knighten JM, Aziz T, Pleshinger DJ, Annamdevula N, Rich TC, Taylor MS, Andrews JF, Macarilla CT, Francis CM. Algorithm for biological second messenger analysis with dynamic regions of interest. PLoS One 2023;18:e0284394. [PMID: 37167308 PMCID: PMC10174521 DOI: 10.1371/journal.pone.0284394] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Accepted: 03/29/2023] [Indexed: 05/13/2023]  Open
4
Satellite Image Processing by Python and R Using Landsat 9 OLI/TIRS and SRTM DEM Data on Côte d'Ivoire, West Africa. J Imaging 2022;8:jimaging8120317. [PMID: 36547482 PMCID: PMC9786221 DOI: 10.3390/jimaging8120317] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 11/15/2022] [Accepted: 11/20/2022] [Indexed: 11/27/2022]  Open
5
Vorontsova I, Lock JT, Parker I. KRAP is required for diffuse and punctate IP3-mediated Ca2+ liberation and determines the number of functional IP3R channels within clusters. Cell Calcium 2022;107:102638. [PMID: 36030740 DOI: 10.1016/j.ceca.2022.102638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2022] [Revised: 08/03/2022] [Accepted: 08/11/2022] [Indexed: 11/02/2022]
6
Termination of Ca2+ puffs during IP3-evoked global Ca2+ signals. Cell Calcium 2021;100:102494. [PMID: 34736161 DOI: 10.1016/j.ceca.2021.102494] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 10/12/2021] [Accepted: 10/13/2021] [Indexed: 12/22/2022]
7
Arige V, Emrich SM, Yoast RE, Trebak M, Yule DI. A protocol for detecting elemental calcium signals (Ca2+ puffs) in mammalian cells using total internal reflection fluorescence microscopy. STAR Protoc 2021;2:100618. [PMID: 34195673 PMCID: PMC8225975 DOI: 10.1016/j.xpro.2021.100618] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
8
Guse AH, Gil Montoya DC, Diercks BP. Mechanisms and functions of calcium microdomains produced by ORAI channels, d-myo-inositol 1,4,5-trisphosphate receptors, or ryanodine receptors. Pharmacol Ther 2021;223:107804. [PMID: 33465399 DOI: 10.1016/j.pharmthera.2021.107804] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Accepted: 01/04/2021] [Indexed: 12/24/2022]
9
Shah SI, Ong HL, Demuro A, Ullah G. PunctaSpecks: A tool for automated detection, tracking, and analysis of multiple types of fluorescently labeled biomolecules. Cell Calcium 2020;89:102224. [PMID: 32502904 PMCID: PMC7343294 DOI: 10.1016/j.ceca.2020.102224] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Revised: 05/12/2020] [Accepted: 05/21/2020] [Indexed: 01/21/2023]
10
Vais H, Wang M, Mallilankaraman K, Payne R, McKennan C, Lock JT, Spruce LA, Fiest C, Chan MYL, Parker I, Seeholzer SH, Foskett JK, Mak DOD. ER-luminal [Ca2+] regulation of InsP3 receptor gating mediated by an ER-luminal peripheral Ca2+-binding protein. eLife 2020;9:e53531. [PMID: 32420875 PMCID: PMC7259957 DOI: 10.7554/elife.53531] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Accepted: 05/15/2020] [Indexed: 12/17/2022]  Open
11
Lock JT, Parker I. IP3 mediated global Ca2+ signals arise through two temporally and spatially distinct modes of Ca2+ release. eLife 2020;9:e55008. [PMID: 32396066 PMCID: PMC7253181 DOI: 10.7554/elife.55008] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Accepted: 05/12/2020] [Indexed: 12/13/2022]  Open
12
Stewart TA, Davis FM. A Primary Cell and Organoid Platform for Evaluating Pharmacological Responses in Mammary Epithelial Cells. ACS Pharmacol Transl Sci 2020;3:63-75. [PMID: 32259089 PMCID: PMC7088941 DOI: 10.1021/acsptsci.9b00090] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Indexed: 12/31/2022]
13
Lock JT, Smith IF, Parker I. Spatial-temporal patterning of Ca2+ signals by the subcellular distribution of IP3 and IP3 receptors. Semin Cell Dev Biol 2019;94:3-10. [PMID: 30703557 DOI: 10.1016/j.semcdb.2019.01.012] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2018] [Revised: 01/17/2019] [Accepted: 01/22/2019] [Indexed: 12/25/2022]
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