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Alves D, Mendonça F, Mostafa SS, Freitas D, Pestana J, Vieira D, Radeta M, Morgado-Dias F. A networked station system for high-resolution wind nowcasting in air traffic operations: A data-augmented deep learning approach. PLoS One 2025; 20:e0316548. [PMID: 39808682 PMCID: PMC11731710 DOI: 10.1371/journal.pone.0316548] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2024] [Accepted: 12/12/2024] [Indexed: 01/16/2025] Open
Abstract
This study introduces a high-resolution wind nowcasting model designed for aviation applications at Madeira International Airport, a location known for its complex wind patterns. By using data from a network of six meteorological stations and deep learning techniques, the produced model is capable of predicting wind speed and direction up to 30-minute ahead with 1-minute temporal resolution. The optimized architecture demonstrated robust predictive performance across all forecast horizons. For the most challenging task, the 30-minute ahead forecasts, the model achieved a wind speed Mean Absolute Error (MAE) of 0.78 m/s and a wind direction MAE of 33.06°. Furthermore, the use of Gaussian noise concatenation to both input and label training data yielded the most consistent results. A case study further validated the model's efficacy, with MAE values below 0.43 m/s for wind speed and between 33.93° and 35.03° for wind direction across different forecast horizons. This approach shows that combining strategically deployed sensor networks with machine learning techniques offers improvements in wind nowcasting for airports in complex environments, possibly enhancing operational efficiency and safety.
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Affiliation(s)
- Décio Alves
- University of Madeira, Funchal, Portugal
- Interactive Technologies Institute (ITI/LARSyS), Funchal, Portugal
| | - Fábio Mendonça
- University of Madeira, Funchal, Portugal
- Interactive Technologies Institute (ITI/LARSyS), Funchal, Portugal
| | | | - Diogo Freitas
- University of Madeira, Funchal, Portugal
- Interactive Technologies Institute (ITI/LARSyS), Funchal, Portugal
- NOVA LINCS NOVA Laboratory for Computer Science and Informatics, Lisbon, Portugal
| | - João Pestana
- University of Madeira, Funchal, Portugal
- Wave Labs, Faculty of Exact Sciences and Engineering, University of Madeira, Portugal
- MARE—Marine and Environmental Sciences Centre, ARNET—Aquatic Research Network, Portugal
- Agência Regional para o Desenvolvimento da Investigação Tecnologia e Inovação (ARDITI), Funchal, Portugal
| | - Dinarte Vieira
- University of Madeira, Funchal, Portugal
- Wave Labs, Faculty of Exact Sciences and Engineering, University of Madeira, Portugal
- MARE—Marine and Environmental Sciences Centre, ARNET—Aquatic Research Network, Portugal
- Agência Regional para o Desenvolvimento da Investigação Tecnologia e Inovação (ARDITI), Funchal, Portugal
| | - Marko Radeta
- University of Madeira, Funchal, Portugal
- Wave Labs, Faculty of Exact Sciences and Engineering, University of Madeira, Portugal
- MARE—Marine and Environmental Sciences Centre, ARNET—Aquatic Research Network, Portugal
- Agência Regional para o Desenvolvimento da Investigação Tecnologia e Inovação (ARDITI), Funchal, Portugal
- Department of Astronomy, Faculty of Mathematics, University of Belgrade, Serbia
| | - Fernando Morgado-Dias
- University of Madeira, Funchal, Portugal
- Interactive Technologies Institute (ITI/LARSyS), Funchal, Portugal
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Wu L, Huang R, He X, Tang L, Ma X. Advances in Machine Learning-Aided Thermal Imaging for Early Detection of Diabetic Foot Ulcers: A Review. BIOSENSORS 2024; 14:614. [PMID: 39727879 DOI: 10.3390/bios14120614] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2024] [Revised: 12/07/2024] [Accepted: 12/09/2024] [Indexed: 12/28/2024]
Abstract
The prevention and early warning of foot ulcers are crucial in diabetic care; however, early microvascular lesions are difficult to detect and often diagnosed at later stages, posing serious health risks. Infrared thermal imaging, as a rapid and non-contact clinical examination technology, can sensitively detect hidden neuropathy and vascular lesions for early intervention. This review provides an informative summary of the background, mechanisms, thermal image datasets, and processing techniques used in thermal imaging for warning of diabetic foot ulcers. It specifically focuses on two-dimensional signal processing methods and the evaluation of computer-aided diagnostic methods commonly used for diabetic foot ulcers.
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Affiliation(s)
- Longyan Wu
- Academy for Engineering and Technology, Yiwu Research Institute, Fudan University, Shanghai 200433, China
| | - Ran Huang
- Academy for Engineering and Technology, Yiwu Research Institute, Fudan University, Shanghai 200433, China
- Center for Innovation and Entrepreneurship, Taizhou Institute of Zhejiang University, Taizhou 318000, China
| | - Xiaoyan He
- Academy for Engineering and Technology, Yiwu Research Institute, Fudan University, Shanghai 200433, China
| | - Lisheng Tang
- Academy for Engineering and Technology, Yiwu Research Institute, Fudan University, Shanghai 200433, China
| | - Xin Ma
- Academy for Engineering and Technology, Yiwu Research Institute, Fudan University, Shanghai 200433, China
- Shanghai Sixth People's Hospital, Shanghai Jiao Tong University, Shanghai 200233, China
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3
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Soltanian-Zadeh S, Kovalick K, Aghayee S, Miller DT, Liu Z, Hammer DX, Farsiu S. Identifying retinal pigment epithelium cells in adaptive optics-optical coherence tomography images with partial annotations and superhuman accuracy. BIOMEDICAL OPTICS EXPRESS 2024; 15:6922-6939. [PMID: 39679394 PMCID: PMC11640571 DOI: 10.1364/boe.538473] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/23/2024] [Revised: 10/25/2024] [Accepted: 10/28/2024] [Indexed: 12/17/2024]
Abstract
Retinal pigment epithelium (RPE) cells are essential for normal retinal function. Morphological defects in these cells are associated with a number of retinal neurodegenerative diseases. Owing to the cellular resolution and depth-sectioning capabilities, individual RPE cells can be visualized in vivo with adaptive optics-optical coherence tomography (AO-OCT). Rapid, cost-efficient, and objective quantification of the RPE mosaic's structural properties necessitates the development of an automated cell segmentation algorithm. This paper presents a deep learning-based method with partial annotation training for detecting RPE cells in AO-OCT images with accuracy better than human performance. We have made the code, imaging datasets, and the manual expert labels available online.
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Affiliation(s)
- Somayyeh Soltanian-Zadeh
- Department of Biomedical Engineering, Duke University, Durham, NC 27708, USA
- Center for Devices and Radiological Health (CDRH), U.S. Food and Drug Administration, Silver Spring, MD 20993, USA
| | - Katherine Kovalick
- Center for Devices and Radiological Health (CDRH), U.S. Food and Drug Administration, Silver Spring, MD 20993, USA
| | - Samira Aghayee
- Center for Devices and Radiological Health (CDRH), U.S. Food and Drug Administration, Silver Spring, MD 20993, USA
| | - Donald T. Miller
- School of Optometry, Indiana University, Bloomington, IN 47405, USA
| | - Zhuolin Liu
- Center for Devices and Radiological Health (CDRH), U.S. Food and Drug Administration, Silver Spring, MD 20993, USA
| | - Daniel X. Hammer
- Center for Devices and Radiological Health (CDRH), U.S. Food and Drug Administration, Silver Spring, MD 20993, USA
| | - Sina Farsiu
- Department of Biomedical Engineering, Duke University, Durham, NC 27708, USA
- Department of Ophthalmology, Duke University Medical Center, Durham, NC 27710, USA
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4
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Weatherall T, Avsar P, Nugent L, Moore Z, McDermott JH, Sreenan S, Wilson H, McEvoy NL, Derwin R, Chadwick P, Patton D. The impact of machine learning on the prediction of diabetic foot ulcers - A systematic review. J Tissue Viability 2024; 33:853-863. [PMID: 39019690 DOI: 10.1016/j.jtv.2024.07.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 06/24/2024] [Accepted: 07/10/2024] [Indexed: 07/19/2024]
Abstract
INTRODUCTION Globally, diabetes mellitus poses a significant health challenge as well as the associated complications of diabetes, such as diabetic foot ulcers (DFUs). The early detection of DFUs is important in the healing process and machine learning may be able to help inform clinical staff during the treatment process. METHODS A PRISMA-informed search of the literature was completed via the Cochrane Library and MEDLINE (OVID), EMBASE, CINAHL Plus and Scopus databases for reports published in English and in the last ten years. The primary outcome of interest was the impact of machine learning on the prediction of DFUs. The secondary outcome was the statistical performance measures reported. Data were extracted using a predesigned data extraction tool. Quality appraisal was undertaken using the evidence-based librarianship critical appraisal tool. RESULTS A total of 18 reports met the inclusion criteria. Nine reports proposed models to identify two classes, either healthy skin or a DFU. Nine reports proposed models to predict the progress of DFUs, for example, classing infection versus non-infection, or using wound characteristics to predict healing. A variety of machine learning techniques were proposed. Where reported, sensitivity = 74.53-98 %, accuracy = 64.6-99.32 %, precision = 62.9-99 %, and the F-measure = 52.05-99.0 %. CONCLUSIONS A variety of machine learning models were suggested to successfully classify DFUs from healthy skin, or to inform the prediction of DFUs. The proposed machine learning models may have the potential to inform the clinical practice of managing DFUs and may help to improve outcomes for individuals with DFUs. Future research may benefit from the development of a standard device and algorithm that detects, diagnoses and predicts the progress of DFUs.
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Affiliation(s)
- Teagan Weatherall
- Skin Wounds and Trauma (SWaT) Research Centre, RCSI University of Medicine and Health Sciences, Dublin, Ireland; School of Nursing and Midwifery, RCSI University of Medicine and Health Sciences, Dublin, Ireland.
| | - Pinar Avsar
- Skin Wounds and Trauma (SWaT) Research Centre, RCSI University of Medicine and Health Sciences, Dublin, Ireland; School of Nursing and Midwifery, RCSI University of Medicine and Health Sciences, Dublin, Ireland.
| | - Linda Nugent
- Skin Wounds and Trauma (SWaT) Research Centre, RCSI University of Medicine and Health Sciences, Dublin, Ireland; School of Nursing and Midwifery, RCSI University of Medicine and Health Sciences, Dublin, Ireland; Fakeeh College of Medical Sciences, Jeddah, Saudi Arabia.
| | - Zena Moore
- Skin Wounds and Trauma (SWaT) Research Centre, RCSI University of Medicine and Health Sciences, Dublin, Ireland; School of Nursing and Midwifery, RCSI University of Medicine and Health Sciences, Dublin, Ireland; Fakeeh College of Medical Sciences, Jeddah, Saudi Arabia; School of Nursing and Midwifery, Griffith University, Southport, Queensland, Australia; Lida Institute, Shanghai, China; Faculty of Medicine, Nursing and Health Sciences, Monash University, Melbourne, Victoria, Australia; Department of Public Health, Faculty of Medicine and Health Sciences, Ghent University, Ghent, Belgium; University of Wales, Cardiff, UK; National Health and Medical Research Council Centre of Research Excellence in Wiser Wound Care, Menzies Health Institute Queensland, Southport, Queensland, Australia.
| | - John H McDermott
- Department of Endocrinology, Royal College of Surgeons in Ireland, Connolly Hospital Blanchardstown, Dublin, Ireland.
| | - Seamus Sreenan
- Department of Endocrinology, Royal College of Surgeons in Ireland, Connolly Hospital Blanchardstown, Dublin, Ireland.
| | - Hannah Wilson
- Skin Wounds and Trauma (SWaT) Research Centre, RCSI University of Medicine and Health Sciences, Dublin, Ireland; School of Nursing and Midwifery, RCSI University of Medicine and Health Sciences, Dublin, Ireland.
| | - Natalie L McEvoy
- School of Nursing and Midwifery, RCSI University of Medicine and Health Sciences, Dublin, Ireland.
| | - Rosemarie Derwin
- School of Nursing and Midwifery, RCSI University of Medicine and Health Sciences, Dublin, Ireland.
| | - Paul Chadwick
- Birmingham City University, Birmingham, UK; Spectral MD, London, UK.
| | - Declan Patton
- Skin Wounds and Trauma (SWaT) Research Centre, RCSI University of Medicine and Health Sciences, Dublin, Ireland; School of Nursing and Midwifery, RCSI University of Medicine and Health Sciences, Dublin, Ireland; Fakeeh College of Medical Sciences, Jeddah, Saudi Arabia; School of Nursing and Midwifery, Griffith University, Southport, Queensland, Australia; Faculty of Science, Medicine and Health, University of Wollongong, Wollongong, New South Wales, Australia.
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5
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Jeyandhan D, P N, Jeyanathan JS. Investigation of Deep Learning Models for Predicting Diabetic Foot Ulcers in Diabetes Patients. 2024 5TH INTERNATIONAL CONFERENCE ON SMART ELECTRONICS AND COMMUNICATION (ICOSEC) 2024:1356-1363. [DOI: 10.1109/icosec61587.2024.10722762] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2025]
Affiliation(s)
- D. Jeyandhan
- Kalasalingam Academy of Research and Education,Department of Computer Application,Krishnankoil,Tamil Nadu
| | - Nagaraj P
- Kalasalingam Academy of Research and Education,Department of Computer Application,Krishnankoil,Tamil Nadu
| | - Josephine Selle Jeyanathan
- Kalasalingam Academy of Research and Education,Department of Electronics and Communication Engineering,Krishnankoil,Tamil Nadu
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Ali Z, Rehman W, Rasheed L, Alzahrani AY, Ali N, Hussain R, Emwas AH, Jaremko M, Abdellattif MH. New 1,3,4-Thiadiazole Derivatives as α-Glucosidase Inhibitors: Design, Synthesis, DFT, ADME, and In Vitro Enzymatic Studies. ACS OMEGA 2024; 9:7480-7490. [PMID: 38405480 PMCID: PMC10882623 DOI: 10.1021/acsomega.3c05854] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Revised: 12/14/2023] [Accepted: 12/15/2023] [Indexed: 02/27/2024]
Abstract
Diabetes is an emerging disorder in the world and is caused due to the imbalance of insulin production as well as serious effects on the body. In search of a better treatment for diabetes, we designed a novel class of 1,3,4-thiadiazole-bearing Schiff base analogues and assessed them for the α-glucosidase enzyme. In the series (1-12), compounds are synthesized and 3 analogues showed excellent inhibitory activity against α-glucosidase enzymes in the range of IC50 values of 18.10 ± 0.20 to 1.10 ± 0.10 μM. In this series, analogues 4, 8, and 9 show remarkable inhibition profile IC50 2.20 ± 0.10, 1.10 ± 0.10, and 1.30 ± 0.10 μM by using acarbose as a standard, whose IC50 is 11.50 ± 0.30 μM. The structure of the synthesized compounds was confirmed through various spectroscopic techniques, such as NMR and HREI-MS. Additionally, molecular docking, pharmacokinetics, cytotoxic evaluation, and density functional theory study were performed to investigate their behavior.
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Affiliation(s)
- Zahid Ali
- Department
of Chemistry, Hazara University, Mansehra 21120, Pakistan
| | - Wajid Rehman
- Department
of Chemistry, Hazara University, Mansehra 21120, Pakistan
| | - Liaqat Rasheed
- Department
of Chemistry, Hazara University, Mansehra 21120, Pakistan
| | - Abdullah Y. Alzahrani
- Department
of Chemistry, Faculty of Science and Arts, King Khalid University, Mohail, Assir 61421, Saudi Arabia
| | - Nawab Ali
- Shanghai
Key Laboratory of Functional Materials Chemistry, School of Chemistry
and Molecular Engineering, East China University
of Science and Technology, Meilong Road130, Shanghai 200237, PR China
| | - Rafaqat Hussain
- Department
of Chemistry, Hazara University, Mansehra 21120, Pakistan
| | - Abdul-Hamid Emwas
- Core
Laboratories, King Abdullah University of
Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
| | - Mariusz Jaremko
- Biological
and Environmental Science and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia
| | - Magda H. Abdellattif
- Department
of Chemistry, Sciences College, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia
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7
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Zhang Z, Dai Y, Xu Z, Grimaldi N, Wang J, Zhao M, Pang R, Sun Y, Gao S, Boyi H. Insole Systems for Disease Diagnosis and Rehabilitation: A Review. BIOSENSORS 2023; 13:833. [PMID: 37622919 PMCID: PMC10452488 DOI: 10.3390/bios13080833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2023] [Revised: 08/11/2023] [Accepted: 08/15/2023] [Indexed: 08/26/2023]
Abstract
Some chronic diseases, including Parkinson's disease (PD), diabetic foot, flat foot, stroke, elderly falling, and knee osteoarthritis (KOA), are related to orthopedic organs, nerves, and muscles. The interaction of these three parts will generate a comprehensive result: gait. Furthermore, the lesions in these regions can produce abnormal gait features. Therefore, monitoring the gait features can assist medical professionals in the diagnosis and analysis of these diseases. Nowadays, various insole systems based on different sensing techniques have been developed to monitor gait and aid in medical research. Hence, a detailed review of insole systems and their applications in disease management can greatly benefit researchers working in the field of medical engineering. This essay is composed of the following sections: the essay firstly provides an overview of the sensing mechanisms and parameters of typical insole systems based on different sensing techniques. Then this essay respectively discusses the three stages of gait parameters pre-processing, respectively: pressure reconstruction, feature extraction, and data normalization. Then, the relationship between gait features and pathogenic mechanisms is discussed, along with the introduction of insole systems that aid in medical research; Finally, the current challenges and future trends in the development of insole systems are discussed.
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Affiliation(s)
- Zhiyuan Zhang
- School of Instrumentation and Optoelectronic Engineering, Beihang University, Beijing 100191, China; (Z.Z.); (Y.D.); (Z.X.)
| | - Yanning Dai
- School of Instrumentation and Optoelectronic Engineering, Beihang University, Beijing 100191, China; (Z.Z.); (Y.D.); (Z.X.)
| | - Zhenyu Xu
- School of Instrumentation and Optoelectronic Engineering, Beihang University, Beijing 100191, China; (Z.Z.); (Y.D.); (Z.X.)
| | - Nicolas Grimaldi
- J. Crayton Pruitt Family Department of Biomedical Engineering, University of Florida, Gainesville, FL 32611, USA;
| | - Jiamu Wang
- School of Transportation Science and Engineering, Beihang University, Beijing 100191, China;
| | - Mufan Zhao
- School of Artificial Intelligence, Beihang University, Beijing 100191, China;
| | - Ruilin Pang
- School of Automation Science and Electrical Engineering, Beihang University, Beijing 100191, China;
| | - Yueming Sun
- School of Electronics and Information Engineering, Beihang University, Beijing 100191, China;
| | - Shuo Gao
- School of Instrumentation and Optoelectronic Engineering, Beihang University, Beijing 100191, China; (Z.Z.); (Y.D.); (Z.X.)
| | - Hu Boyi
- School of Industrial and Systems Engineering, University of Florida, Gaineville, FL 32611, USA
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Adam CA, Marcu DTM, Mitu O, Roca M, Aursulesei Onofrei V, Zabara ML, Tribuș LC, Cumpăt C, Crișan Dabija R, Mitu F. Old and Novel Predictors for Cardiovascular Risk in Diabetic Foot Syndrome—A Narrative Review. APPLIED SCIENCES 2023; 13:5990. [DOI: 10.3390/app13105990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/17/2024]
Abstract
Diabetic foot syndrome (DFS) is a complication associated with diabetes that has a strong negative impact, both medically and socio-economically. Recent epidemiological data show that one in six patients with diabetes will develop an ulcer in their lifetime. Vascular complications associated with diabetic foot have multiple prognostic implications in addition to limiting functional status and leading to decreased quality of life for these patients. We searched the electronic databases of PubMed, MEDLINE and EMBASE for studies that evaluated the role of DFS as a cardiovascular risk factor through the pathophysiological mechanisms involved, in particular the inflammatory ones and the associated metabolic changes. In the era of evidence-based medicine, the management of these cases in multidisciplinary teams of “cardio-diabetologists” prevents the occurrence of long-term disabling complications and has prognostic value for cardiovascular morbidity and mortality among diabetic patients. Identifying artificial-intelligence-based cardiovascular risk prediction models or conducting extensive clinical trials on gene therapy or potential therapeutic targets promoted by in vitro studies represent future research directions with a modulating role on the risk of morbidity and mortality in patients with DFS.
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Affiliation(s)
- Cristina Andreea Adam
- Department of Medical Specialties I and III and Department of Surgical Specialties, “Grigore T. Popa” University of Medicine and Pharmacy, 700115 Iasi, Romania
- Clinical Rehabilitation Hospital, Cardiovascular Rehabilitation Clinic, 700661 Iasi, Romania
| | - Dragos Traian Marius Marcu
- Department of Medical Specialties I and III and Department of Surgical Specialties, “Grigore T. Popa” University of Medicine and Pharmacy, 700115 Iasi, Romania
- Clinical Hospital of Pneumophthisiology Iași, 700115 Iasi, Romania
| | - Ovidiu Mitu
- Department of Medical Specialties I and III and Department of Surgical Specialties, “Grigore T. Popa” University of Medicine and Pharmacy, 700115 Iasi, Romania
- “St. Spiridon” Clinical Emergency Hospital, 700111 Iasi, Romania
| | - Mihai Roca
- Department of Medical Specialties I and III and Department of Surgical Specialties, “Grigore T. Popa” University of Medicine and Pharmacy, 700115 Iasi, Romania
- Clinical Rehabilitation Hospital, Cardiovascular Rehabilitation Clinic, 700661 Iasi, Romania
| | - Viviana Aursulesei Onofrei
- Department of Medical Specialties I and III and Department of Surgical Specialties, “Grigore T. Popa” University of Medicine and Pharmacy, 700115 Iasi, Romania
- “St. Spiridon” Clinical Emergency Hospital, 700111 Iasi, Romania
| | - Mihai Lucian Zabara
- Department of Medical Specialties I and III and Department of Surgical Specialties, “Grigore T. Popa” University of Medicine and Pharmacy, 700115 Iasi, Romania
| | - Laura Carina Tribuș
- Department of Internal Medicine, Faculty of Dentistry, “Carol Davila” University of Medicine and Pharmacy, 050474 Bucharest, Romania
- Department of Internal Medicine, Ilfov County Emergency Hospital, 022104 Bucharest, Romania
| | - Carmen Cumpăt
- Department of Medical Specialties I and III and Department of Surgical Specialties, “Grigore T. Popa” University of Medicine and Pharmacy, 700115 Iasi, Romania
- Department of Management, “Alexandru Ioan Cuza” University, 700506 Iasi, Romania
| | - Radu Crișan Dabija
- Department of Medical Specialties I and III and Department of Surgical Specialties, “Grigore T. Popa” University of Medicine and Pharmacy, 700115 Iasi, Romania
- Clinical Hospital of Pneumophthisiology Iași, 700115 Iasi, Romania
| | - Florin Mitu
- Department of Medical Specialties I and III and Department of Surgical Specialties, “Grigore T. Popa” University of Medicine and Pharmacy, 700115 Iasi, Romania
- Clinical Hospital of Pneumophthisiology Iași, 700115 Iasi, Romania
- Academy of Medical Sciences, 030167 Bucharest, Romania
- Academy of Romanian Scientists, 700050 Iasi, Romania
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Wu X, Xu P, Chen H, Yin J, Li K. Improving DFU Image Classification by an Adaptive Augmentation Pool and Voting with Expertise. 2023 11TH INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND COMPUTATIONAL BIOLOGY (ICBCB) 2023:196-202. [DOI: 10.1109/icbcb57893.2023.10246573] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2025]
Affiliation(s)
- Xin Wu
- Dongguan University of Technology,School of Cyberspace Security,Dongguan,China
| | - Pin Xu
- Dongguan University of Technology,School of Cyberspace Security,Dongguan,China
| | - Haoyuan Chen
- Dongguan University of Technology,School of Cyberspace Security,Dongguan,China
| | - Jianping Yin
- Dongguan University of Technology,School of Cyberspace Security,Dongguan,China
| | - Kuan Li
- Dongguan University of Technology,School of Cyberspace Security,Dongguan,China
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10
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Grading of gliomas using transfer learning on MRI images. MAGMA (NEW YORK, N.Y.) 2023; 36:43-53. [PMID: 36326937 DOI: 10.1007/s10334-022-01046-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Revised: 09/04/2022] [Accepted: 10/17/2022] [Indexed: 11/06/2022]
Abstract
OBJECTIVE Despite the critical role of Magnetic Resonance Imaging (MRI) in the diagnosis of brain tumours, there are still many pitfalls in the exact grading of them, in particular, gliomas. In this regard, it was aimed to examine the potential of Transfer Learning (TL) and Machine Learning (ML) algorithms in the accurate grading of gliomas on MRI images. MATERIALS AND METHODS Dataset has included four types of axial MRI images of glioma brain tumours with grades I-IV: T1-weighted, T2-weighted, FLAIR, and T1-weighted Contrast-Enhanced (T1-CE). Images were resized, normalized, and randomly split into training, validation, and test sets. ImageNet pre-trained Convolutional Neural Networks (CNNs) were utilized for feature extraction and classification, using Adam and SGD optimizers. Logistic Regression (LR) and Support Vector Machine (SVM) methods were also implemented for classification instead of Fully Connected (FC) layers taking advantage of features extracted by each CNN. RESULTS Evaluation metrics were computed to find the model with the best performance, and the highest overall accuracy of 99.38% was achieved for the model containing an SVM classifier and features extracted by pre-trained VGG-16. DISCUSSION It was demonstrated that developing Computer-aided Diagnosis (CAD) systems using pre-trained CNNs and classification algorithms is a functional approach to automatically specify the grade of glioma brain tumours in MRI images. Using these models is an excellent alternative to invasive methods and helps doctors diagnose more accurately before treatment.
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Khanna NN, Maindarkar MA, Viswanathan V, Puvvula A, Paul S, Bhagawati M, Ahluwalia P, Ruzsa Z, Sharma A, Kolluri R, Krishnan PR, Singh IM, Laird JR, Fatemi M, Alizad A, Dhanjil SK, Saba L, Balestrieri A, Faa G, Paraskevas KI, Misra DP, Agarwal V, Sharma A, Teji JS, Al-Maini M, Nicolaides A, Rathore V, Naidu S, Liblik K, Johri AM, Turk M, Sobel DW, Miner M, Viskovic K, Tsoulfas G, Protogerou AD, Mavrogeni S, Kitas GD, Fouda MM, Kalra MK, Suri JS. Cardiovascular/Stroke Risk Stratification in Diabetic Foot Infection Patients Using Deep Learning-Based Artificial Intelligence: An Investigative Study. J Clin Med 2022; 11:6844. [PMID: 36431321 PMCID: PMC9693632 DOI: 10.3390/jcm11226844] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Revised: 11/15/2022] [Accepted: 11/16/2022] [Indexed: 11/22/2022] Open
Abstract
A diabetic foot infection (DFI) is among the most serious, incurable, and costly to treat conditions. The presence of a DFI renders machine learning (ML) systems extremely nonlinear, posing difficulties in CVD/stroke risk stratification. In addition, there is a limited number of well-explained ML paradigms due to comorbidity, sample size limits, and weak scientific and clinical validation methodologies. Deep neural networks (DNN) are potent machines for learning that generalize nonlinear situations. The objective of this article is to propose a novel investigation of deep learning (DL) solutions for predicting CVD/stroke risk in DFI patients. The Preferred Reporting Items for Systematic reviews and Meta-Analyses (PRISMA) search strategy was used for the selection of 207 studies. We hypothesize that a DFI is responsible for increased morbidity and mortality due to the worsening of atherosclerotic disease and affecting coronary artery disease (CAD). Since surrogate biomarkers for CAD, such as carotid artery disease, can be used for monitoring CVD, we can thus use a DL-based model, namely, Long Short-Term Memory (LSTM) and Recurrent Neural Networks (RNN) for CVD/stroke risk prediction in DFI patients, which combines covariates such as office and laboratory-based biomarkers, carotid ultrasound image phenotype (CUSIP) lesions, along with the DFI severity. We confirmed the viability of CVD/stroke risk stratification in the DFI patients. Strong designs were found in the research of the DL architectures for CVD/stroke risk stratification. Finally, we analyzed the AI bias and proposed strategies for the early diagnosis of CVD/stroke in DFI patients. Since DFI patients have an aggressive atherosclerotic disease, leading to prominent CVD/stroke risk, we, therefore, conclude that the DL paradigm is very effective for predicting the risk of CVD/stroke in DFI patients.
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Affiliation(s)
- Narendra N. Khanna
- Department of Cardiology, Indraprastha APOLLO Hospitals, New Delhi 110001, India
| | - Mahesh A. Maindarkar
- Stroke Monitoring and Diagnostic Division, AtheroPoint™, Roseville, CA 95661, USA
- Department of Biomedical Engineering, North Eastern Hill University, Shillong 793022, India
| | | | - Anudeep Puvvula
- Stroke Monitoring and Diagnostic Division, AtheroPoint™, Roseville, CA 95661, USA
- Annu’s Hospitals for Skin and Diabetes, Nellore 524101, India
| | - Sudip Paul
- Department of Biomedical Engineering, North Eastern Hill University, Shillong 793022, India
| | - Mrinalini Bhagawati
- Department of Biomedical Engineering, North Eastern Hill University, Shillong 793022, India
| | - Puneet Ahluwalia
- Max Institute of Cancer Care, Max Super Specialty Hospital, New Delhi 110017, India
| | - Zoltan Ruzsa
- Invasive Cardiology Division, Faculty of Medicine, University of Szeged, 6720 Szeged, Hungary
| | - Aditya Sharma
- Division of Cardiovascular Medicine, University of Virginia, Charlottesville, VA 22904, USA
| | - Raghu Kolluri
- Ohio Health Heart and Vascular, Columbus, OH 43214, USA
| | | | - Inder M. Singh
- Stroke Monitoring and Diagnostic Division, AtheroPoint™, Roseville, CA 95661, USA
| | - John R. Laird
- Heart and Vascular Institute, Adventist Health St. Helena, St Helena, CA 94574, USA
| | - Mostafa Fatemi
- Department of Physiology & Biomedical Engineering, Mayo Clinic College of Medicine and Science, Rochester, MN 55905, USA
| | - Azra Alizad
- Department of Radiology, Mayo Clinic College of Medicine and Science, Rochester, MN 55905, USA
| | - Surinder K. Dhanjil
- Stroke Monitoring and Diagnostic Division, AtheroPoint™, Roseville, CA 95661, USA
| | - Luca Saba
- Department of Radiology, Azienda Ospedaliero Universitaria, 40138 Cagliari, Italy
| | - Antonella Balestrieri
- Cardiovascular Prevention and Research Unit, Department of Pathophysiology, National & Kapodistrian University of Athens, 15772 Athens, Greece
| | - Gavino Faa
- Department of Pathology, Azienda Ospedaliero Universitaria, 09124 Cagliari, Italy
| | | | | | - Vikas Agarwal
- Department of Immunology, SGPGIMS, Lucknow 226014, India
| | - Aman Sharma
- Department of Immunology, SGPGIMS, Lucknow 226014, India
| | - Jagjit S. Teji
- Ann and Robert H. Lurie Children’s Hospital of Chicago, Chicago, IL 60611, USA
| | - Mustafa Al-Maini
- Allergy, Clinical Immunology and Rheumatology Institute, Toronto, ON L4Z 4C4, Canada
| | - Andrew Nicolaides
- Vascular Screening and Diagnostic Centre, University of Nicosia Medical School, Egkomi 2408, Cyprus
| | | | - Subbaram Naidu
- Electrical Engineering Department, University of Minnesota, Duluth, MN 55812, USA
| | - Kiera Liblik
- Department of Medicine, Division of Cardiology, Queen’s University, Kingston, ON K7L 3N6, Canada
| | - Amer M. Johri
- Department of Medicine, Division of Cardiology, Queen’s University, Kingston, ON K7L 3N6, Canada
| | - Monika Turk
- The Hanse-Wissenschaftskolleg Institute for Advanced Study, 27753 Delmenhorst, Germany
| | - David W. Sobel
- Rheumatology Unit, National Kapodistrian University of Athens, 15772 Athens, Greece
| | - Martin Miner
- Men’s Health Centre, Miriam Hospital Providence, Providence, RI 02906, USA
| | - Klaudija Viskovic
- Department of Radiology and Ultrasound, University Hospital for Infectious Diseases, 10000 Zagreb, Croatia
| | - George Tsoulfas
- Department of Surgery, Aristoteleion University of Thessaloniki, 54124 Thessaloniki, Greece
| | - Athanasios D. Protogerou
- Cardiovascular Prevention and Research Unit, Department of Pathophysiology, National & Kapodistrian University of Athens, 15772 Athens, Greece
| | - Sophie Mavrogeni
- Cardiology Clinic, Onassis Cardiac Surgery Centre, 17674 Athens, Greece
| | - George D. Kitas
- Academic Affairs, Dudley Group NHS Foundation Trust, Dudley DY1 2HQ, UK
- Arthritis Research UK Epidemiology Unit, Manchester University, Manchester M13 9PL, UK
| | - Mostafa M. Fouda
- Department of Electrical and Computer Engineering, Idaho State University, Pocatello, ID 83209, USA
| | | | - Jasjit S. Suri
- Stroke Monitoring and Diagnostic Division, AtheroPoint™, Roseville, CA 95661, USA
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Automatic Classification of Foot Thermograms Using Machine Learning Techniques. ALGORITHMS 2022. [DOI: 10.3390/a15070236] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Diabetic foot is one of the main complications observed in diabetic patients; it is associated with the development of foot ulcers and can lead to amputation. In order to diagnose these complications, specialists have to analyze several factors. To aid their decisions and help prevent mistakes, the resort to computer-assisted diagnostic systems using artificial intelligence techniques is gradually increasing. In this paper, two different models for the classification of thermograms of the feet of diabetic and healthy individuals are proposed and compared. In order to detect and classify abnormal changes in the plantar temperature, machine learning algorithms are used in both models. In the first model, the foot thermograms are classified into four classes: healthy and three categories for diabetics. The second model has two stages: in the first stage, the foot is classified as belonging to a diabetic or healthy individual, while, in the second stage, a classification refinement is conducted, classifying diabetic foot into three classes of progressive severity. The results show that both proposed models proved to be efficient, allowing us to classify a foot thermogram as belonging to a healthy or diabetic individual, with the diabetic ones divided into three classes; however, when compared, Model 2 outperforms Model 1 and allows for a better performance classification concerning the healthy category and the first class of diabetic individuals. These results demonstrate that the proposed methodology can be a tool to aid medical diagnosis.
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13
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Hernandez-Guedes A, Santana-Perez I, Arteaga-Marrero N, Fabelo H, Callico GM, Ruiz-Alzola J. Performance Evaluation of Deep Learning Models for Image Classification Over Small Datasets: Diabetic Foot Case Study. IEEE ACCESS 2022; 10:124373-124386. [DOI: 10.1109/access.2022.3225107] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2025]
Affiliation(s)
- Abian Hernandez-Guedes
- Research Institute in Biomedical and Health Sciences (IUIBS), University of Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain
| | - Idafen Santana-Perez
- Research Institute in Biomedical and Health Sciences (IUIBS), University of Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain
| | - Natalia Arteaga-Marrero
- IACTEC Medical Technology Group, Instituto de Astrofísica de Canarias (IAC), San Cristóbal de La Laguna, Spain
| | - Himar Fabelo
- Research Institute for Applied Microelectronics (IUMA), University of Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain
| | - Gustavo M. Callico
- Research Institute for Applied Microelectronics (IUMA), University of Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain
| | - Juan Ruiz-Alzola
- Research Institute in Biomedical and Health Sciences (IUIBS), University of Las Palmas de Gran Canaria, Las Palmas de Gran Canaria, Spain
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