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Jangra S, Potts J, Ghosh A, Seal DR. Genome editing: A novel approach to manage insect vectors of plant viruses. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY 2024; 174:104189. [PMID: 39341259 DOI: 10.1016/j.ibmb.2024.104189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2024] [Revised: 09/10/2024] [Accepted: 09/22/2024] [Indexed: 09/30/2024]
Abstract
Insect vectors significantly threaten global agriculture by transmitting numerous plant viruses. Various measures, from conventional insecticides to genetic engineering, are used to mitigate this threat. However, none provide complete resistance. Therefore, researchers are looking for novel control options. In recent years with the advancements in genomic technologies, genomes and transcriptomes of various insect vectors have been generated. However, the lack of knowledge about gene functions hinders the development of novel strategies to restrict virus spread. RNA interference (RNAi) is widely used to elucidate gene functions, but its variable efficacy hampers its use in managing insect vectors and plant viruses. Genome editing has the potential to overcome these challenges and has been extensively used in various insect pest species. This review summarizes the progress and potential of genome editing in plant virus vectors and its application as a functional genomic tool to elucidate virus-vector interactions. We also discuss the major challenges associated with editing genes of interest in insect vectors.
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Affiliation(s)
- Sumit Jangra
- UF/IFAS Tropical Research and Education Center, Homestead, FL, 33031, USA.
| | - Jesse Potts
- UF/IFAS Tropical Research and Education Center, Homestead, FL, 33031, USA
| | - Amalendu Ghosh
- Advanced Centre for Plant Virology, Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
| | - Dakshina R Seal
- UF/IFAS Tropical Research and Education Center, Homestead, FL, 33031, USA
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Guo K, Dong Z, Zhang X, Chen Y, Li Y, Jiang W, Qin L, Zhang Y, Guo Z, Xia Q, Zhao P. Analysis of histomorphometric and proteome dynamics inside the silk gland lumen of Bombyx mori revealed the dynamic change of silk protein during the molt stage. Int J Biol Macromol 2023; 236:123926. [PMID: 36889618 DOI: 10.1016/j.ijbiomac.2023.123926] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Revised: 02/18/2023] [Accepted: 02/28/2023] [Indexed: 03/08/2023]
Abstract
Silkworms spin different silks at different growth stages for specific purposes. The silk spun before the end of each instar is stronger than that at the beginning of each instar and cocoon silk. However, the compositional changes in silk proteins during this process are unknown. Consequently, we performed histomorphological and proteomic analyses of the silk gland to characterize changes from the instar end to the next instar beginning. The silk glands were collected on day 3 of third- and fourth-instar larvae (III-3 and IV-3) and the beginning of fourth-instar larvae (IV-0). Proteomic analysis identified 2961 proteins from all silk glands. Silk proteins P25 and Ser5 were significantly more abundant in III-3 and IV-3 than in IV-0, and many cuticular proteins and protease inhibitors increased significantly in IV-0 compared with III-3 and IV-3. This shift may cause mechanical property differences between the instar end and beginning silk. Using section staining, qPCR, and western blotting, we found for the first time that silk proteins were degraded first and then resynthesized during the molting stage. Furthermore, we revealed that fibroinase mediated the changes of silk proteins during molting. Our results provide insights into the molecular mechanisms of silk proteins dynamic regulation during molting.
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Affiliation(s)
- Kaiyu Guo
- Biological Science Research Center, Integrative Science Center of Germplasm Creation in Western China (CHONGQING) Science City, Southwest University, 400715 Chongqing, China; Key Laboratory for Germplasm Creation in Upper Reaches of the Yangtze River, Ministry of Agriculture and Rural Affairs, 400715 Chongqing, China; Engineering Laboratory of Sericultural and Functional Genome and Biotechnology, Development and Reform Commission, 400715 Chongqing, China
| | - Zhaoming Dong
- Key Laboratory for Germplasm Creation in Upper Reaches of the Yangtze River, Ministry of Agriculture and Rural Affairs, 400715 Chongqing, China; Engineering Laboratory of Sericultural and Functional Genome and Biotechnology, Development and Reform Commission, 400715 Chongqing, China
| | - Xiaolu Zhang
- Biological Science Research Center, Integrative Science Center of Germplasm Creation in Western China (CHONGQING) Science City, Southwest University, 400715 Chongqing, China; Key Laboratory for Germplasm Creation in Upper Reaches of the Yangtze River, Ministry of Agriculture and Rural Affairs, 400715 Chongqing, China; Engineering Laboratory of Sericultural and Functional Genome and Biotechnology, Development and Reform Commission, 400715 Chongqing, China
| | - Yuqing Chen
- Biological Science Research Center, Integrative Science Center of Germplasm Creation in Western China (CHONGQING) Science City, Southwest University, 400715 Chongqing, China
| | - Yi Li
- Biological Science Research Center, Integrative Science Center of Germplasm Creation in Western China (CHONGQING) Science City, Southwest University, 400715 Chongqing, China; Key Laboratory for Germplasm Creation in Upper Reaches of the Yangtze River, Ministry of Agriculture and Rural Affairs, 400715 Chongqing, China; Engineering Laboratory of Sericultural and Functional Genome and Biotechnology, Development and Reform Commission, 400715 Chongqing, China
| | - Wenchao Jiang
- Biological Science Research Center, Integrative Science Center of Germplasm Creation in Western China (CHONGQING) Science City, Southwest University, 400715 Chongqing, China; Key Laboratory for Germplasm Creation in Upper Reaches of the Yangtze River, Ministry of Agriculture and Rural Affairs, 400715 Chongqing, China; Engineering Laboratory of Sericultural and Functional Genome and Biotechnology, Development and Reform Commission, 400715 Chongqing, China
| | - Lixia Qin
- Biological Science Research Center, Integrative Science Center of Germplasm Creation in Western China (CHONGQING) Science City, Southwest University, 400715 Chongqing, China; Key Laboratory for Germplasm Creation in Upper Reaches of the Yangtze River, Ministry of Agriculture and Rural Affairs, 400715 Chongqing, China; Engineering Laboratory of Sericultural and Functional Genome and Biotechnology, Development and Reform Commission, 400715 Chongqing, China
| | - Yan Zhang
- Biological Science Research Center, Integrative Science Center of Germplasm Creation in Western China (CHONGQING) Science City, Southwest University, 400715 Chongqing, China; Key Laboratory for Germplasm Creation in Upper Reaches of the Yangtze River, Ministry of Agriculture and Rural Affairs, 400715 Chongqing, China; Engineering Laboratory of Sericultural and Functional Genome and Biotechnology, Development and Reform Commission, 400715 Chongqing, China
| | - Zhouguanrui Guo
- Biological Science Research Center, Integrative Science Center of Germplasm Creation in Western China (CHONGQING) Science City, Southwest University, 400715 Chongqing, China
| | - Qingyou Xia
- Key Laboratory for Germplasm Creation in Upper Reaches of the Yangtze River, Ministry of Agriculture and Rural Affairs, 400715 Chongqing, China; Engineering Laboratory of Sericultural and Functional Genome and Biotechnology, Development and Reform Commission, 400715 Chongqing, China
| | - Ping Zhao
- Biological Science Research Center, Integrative Science Center of Germplasm Creation in Western China (CHONGQING) Science City, Southwest University, 400715 Chongqing, China; Key Laboratory for Germplasm Creation in Upper Reaches of the Yangtze River, Ministry of Agriculture and Rural Affairs, 400715 Chongqing, China; Engineering Laboratory of Sericultural and Functional Genome and Biotechnology, Development and Reform Commission, 400715 Chongqing, China.
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Ma SY, Smagghe G, Xia QY. Genome editing in Bombyx mori: New opportunities for silkworm functional genomics and the sericulture industry. INSECT SCIENCE 2019; 26:964-972. [PMID: 29845729 DOI: 10.1111/1744-7917.12609] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2018] [Revised: 04/29/2018] [Accepted: 05/07/2018] [Indexed: 06/08/2023]
Abstract
In recent years, research in life sciences has been remarkably revolutionized owing to the establishment, development and application of genome editing technologies. Genome editing has not only accelerated fundamental research but has also shown promising applications in agricultural breeding and therapy. In particular, the clustered, regularly interspaced, short palindromic repeat (CRISPR) technology has become an indispensable tool in molecular biology owing to its high efficacy and simplicity. Genome editing tools have also been established in silkworm (Bombyx mori), a model organism of Lepidoptera insects with high economic importance. This has remarkably improved the level and scope of silkworm research and could reveal new mechanisms or targets in basic entomology and pest management studies. In this review, we summarize the progress and potential of genome editing in silkworm and its applications in functional genomic studies for generating novel genetic materials.
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Affiliation(s)
- San-Yuan Ma
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
- Chongqing Engineering and Technology Research Center for Novel Silk Materials, Southwest University, Chongqing, China
| | - Guy Smagghe
- Department of Crop Protection, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium
| | - Qing-You Xia
- State Key Laboratory of Silkworm Genome Biology, Southwest University, Chongqing, China
- Chongqing Engineering and Technology Research Center for Novel Silk Materials, Southwest University, Chongqing, China
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Hu W, Lu W, Wei L, Zhang Y, Xia Q. Molecular nature of dominant naked pupa mutation reveals novel insights into silk production in Bombyx mori. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY 2019; 109:52-62. [PMID: 30954682 DOI: 10.1016/j.ibmb.2019.04.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Revised: 04/01/2019] [Accepted: 04/01/2019] [Indexed: 06/09/2023]
Abstract
Silks are natural protein biopolymers with desirable mechanical properties and play crucial roles in insect survival and reproduction. However, the mechanisms by which large amounts of silk fibroin are efficiently secreted from the protein production organs (silk glands) remain elusive. Here, we focus on a dominant silkworm mutation, naked pupa (Nd), which enables carriers to lose spinning behaviors, produce a deficiency of silk fibroin production, and result in degenerate posterior silk gland (PSG). Linkage mapping and sequencing analyses revealed a deletion of 19 bp of the fibroin heavy chain (FibH), which results in a frameshift-caused deletion of the C-terminal domain (CT) responsible for the Nd locus. Immunofluorescence and immunoblot analysis showed that the PSG cells with truncated FibH exhibit blockades in the secretion of all three fibroins (FibH, FibL, and P25) from silk gland cell to silk gland lumen (a secretion-deficiency). By comparing the hereditary characters of three naked silkworm mutations (Nd, Nd-s, and fibH-ko), we explored the relationship between dominant and recessive inheritances in naked silkworms and found that high-molecular-weight/repetitive FibH with secretion-deficiency was in positive correlation with PSG atrophy phenotype, and moreover, the repetitive region of Nd-FibH accounted for the dominant phenotypes of fibroin secretion-deficiency, PSG atrophy, and naked pupa in B. mori. Our results uncovered the molecular nature of the silkworm Nd mutation and significantly improved our understanding of fibroin synthesis and secretion in silk-spinning caterpillars.
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Affiliation(s)
- Wenbo Hu
- Biological Science Research Center, Southwest University, Chongqing, 400716, PR China; Chongqing Key Laboratory of Sericulture Science, Chongqing Engineering and Technology Research Center for Novel Silk Materials, Beibei, Chongqing, 400716, PR China
| | - Wei Lu
- Biological Science Research Center, Southwest University, Chongqing, 400716, PR China; Chongqing Key Laboratory of Sericulture Science, Chongqing Engineering and Technology Research Center for Novel Silk Materials, Beibei, Chongqing, 400716, PR China
| | - Liwan Wei
- Chongqing Key Laboratory of Sericulture Science, Chongqing Engineering and Technology Research Center for Novel Silk Materials, Beibei, Chongqing, 400716, PR China
| | - Yan Zhang
- Biological Science Research Center, Southwest University, Chongqing, 400716, PR China; Chongqing Key Laboratory of Sericulture Science, Chongqing Engineering and Technology Research Center for Novel Silk Materials, Beibei, Chongqing, 400716, PR China
| | - Qingyou Xia
- Biological Science Research Center, Southwest University, Chongqing, 400716, PR China; Chongqing Key Laboratory of Sericulture Science, Chongqing Engineering and Technology Research Center for Novel Silk Materials, Beibei, Chongqing, 400716, PR China.
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Changes in 30K protein synthesis during delayed degeneration of the silk gland by a caspase-dependent pathway in a Bombyx (silkworm) mutant. J Comp Physiol B 2016; 186:689-700. [DOI: 10.1007/s00360-016-0990-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2016] [Revised: 03/29/2016] [Accepted: 04/03/2016] [Indexed: 12/19/2022]
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Reid W, O'Brochta DA. Applications of genome editing in insects. CURRENT OPINION IN INSECT SCIENCE 2016; 13:43-54. [PMID: 27436552 DOI: 10.1016/j.cois.2015.11.001] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2015] [Revised: 09/23/2015] [Accepted: 11/01/2015] [Indexed: 05/14/2023]
Abstract
Insect genome editing was first reported 1991 in Drosophila melanogaster but the technology used was not portable to other species. Not until the recent development of facile, engineered DNA endonuclease systems has gene editing become widely available to insect scientists. Most applications in insects to date have been technical in nature but this is rapidly changing. Functional genomics and genetics-based insect control efforts will be major beneficiaries of the application of contemporary gene editing technologies. Engineered endonucleases like Cas9 make it possible to create powerful and effective gene drive systems that could be used to reduce or even eradicate specific insect populations. 'Best practices' for using Cas9-based editing are beginning to emerge making it easier and more effective to design and use but gene editing technologies still require traditional means of delivery in order to introduce them into somatic and germ cells of insects-microinjection of developing embryos. This constrains the use of these technologies by insect scientists. Insects created using editing technologies challenge existing governmental regulatory structures designed to manage genetically modified organisms.
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Affiliation(s)
- William Reid
- Institute for Bioscience and Biotechnology Research, Department of Entomology, University of Maryland, College Park, 9600 Gudelsky Drive, Rockville, MD 20850, United States
| | - David A O'Brochta
- Institute for Bioscience and Biotechnology Research, Department of Entomology, University of Maryland, College Park, 9600 Gudelsky Drive, Rockville, MD 20850, United States.
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Wang H, Wang L, Wang Y, Tao H, Yin W, SiMa Y, Wang Y, Xu S. High yield exogenous protein HPL production in the Bombyx mori silk gland provides novel insight into recombinant expression systems. Sci Rep 2015; 5:13839. [PMID: 26370318 PMCID: PMC4570194 DOI: 10.1038/srep13839] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2015] [Accepted: 08/06/2015] [Indexed: 01/24/2023] Open
Abstract
The silk gland of Bombyx mori (BmSG) has gained significant attention by dint of superior synthesis and secretion of proteins. However, the application of BmSG bioreactor is still a controversial issue because of low yields of recombinant proteins. Here, a 3057 bp full-length coding sequence of Hpl was designed and transformed into the silkworm genome, and then the mutant (Hpl/Hpl) with specific expression of Hpl in posterior BmSG (BmPSG) was obtained. In the mutants, the transcription level of Fib-L and P25, and corresponding encoding proteins, did not decrease. However, the mRNA level of Fib-H was reduced by 71.1%, and Fib-H protein in the secreted fibroin was decreased from 91.86% to 71.01%. The mRNA level of Hpl was 0.73% and 0.74% of Fib-H and Fib-L, respectively, while HPL protein accounted for 18.85% of fibroin and 15.46% of the total amount of secreted silk protein. The exogenous protein was therefore very efficiently translated and secreted. Further analysis of differentially expressed gene (DEG) was carried out in the BmPSG cells and 891 DEGs were detected, of which 208 genes were related to protein metabolism. Reduced expression of endogenous silk proteins in the BmPSG could effectively improve the production efficiency of recombinant exogenous proteins.
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Affiliation(s)
- Huan Wang
- School of Biology and Basic Medical Sciences, Medical College, Soochow University, Suzhou 215123, China
| | - Lu Wang
- School of Biology and Basic Medical Sciences, Medical College, Soochow University, Suzhou 215123, China
| | - Yulong Wang
- School of Biology and Basic Medical Sciences, Medical College, Soochow University, Suzhou 215123, China
| | - Hui Tao
- School of Biology and Basic Medical Sciences, Medical College, Soochow University, Suzhou 215123, China
| | - Weimin Yin
- School of Biology and Basic Medical Sciences, Medical College, Soochow University, Suzhou 215123, China
| | - Yanghu SiMa
- School of Biology and Basic Medical Sciences, Medical College, Soochow University, Suzhou 215123, China
| | - Yujun Wang
- R&D Division, Okamoto Corporation, Nara 635-8550, Japan
| | - Shiqing Xu
- School of Biology and Basic Medical Sciences, Medical College, Soochow University, Suzhou 215123, China.,National Engineering Laboratory for Modern Silk, Soochow University, Suzhou 215123, China
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