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Shi L, Ren A, Zhu J, Liu R, Zhao M. Research Progress on Edible Fungi Genetic System. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2023; 184:269-284. [PMID: 35364695 DOI: 10.1007/10_2021_192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
In order to obtain strains with targeted changes in genetic characteristics, molecular biology and genetic engineering techniques are used to integrate target gene fragments into the vector and transform them into recipient cells. Due to the different target genes and functional elements on the transformation plasmids, gene silencing, gene knockout, and gene overexpression can be carried out, which provides a new way to study the gene function of edible fungi. At present, the cloning vectors used in the transformation of edible fungi are modified by bacterial plasmids, among which pCAMBIA-1300 plasmid and pAN7 plasmid are the two most commonly used basic vectors. On this basis, some basic elements such as promoters, selective marker genes, and reporter genes were added to construct silencing vectors, knockout vectors, and overexpression vectors. At the same time, different expression vector systems are needed for different transformation methods. In this chapter, the main elements of the genetic system (promoters, screening markers), the current main genetic transformation methods (Agrobacterium-mediated transformation, liposome transformation, electroporation method), and the specific application of transformation were systematically summarized, which provides a reference for the study of the genetic system of edible fungi.
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Affiliation(s)
- Liang Shi
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, People's Republic of China
| | - Ang Ren
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, People's Republic of China
| | - Jing Zhu
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, People's Republic of China
| | - Rui Liu
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, People's Republic of China
| | - Mingwen Zhao
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, Department of Microbiology, College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, People's Republic of China.
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Lichius A, Ruiz DM, Zeilinger S. Genetic Transformation of Filamentous Fungi: Achievements and Challenges. GRAND CHALLENGES IN FUNGAL BIOTECHNOLOGY 2020. [DOI: 10.1007/978-3-030-29541-7_5] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Sun J, Xu R, Xiao S, Lu Y, Zhang Q, Xue C. Agrobacterium tumefaciens -mediated transformation as an efficient tool for insertional mutagenesis of Kabatiella zeae. J Microbiol Methods 2018; 149:96-100. [DOI: 10.1016/j.mimet.2018.05.004] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2018] [Revised: 05/02/2018] [Accepted: 05/02/2018] [Indexed: 11/30/2022]
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Guo R, Wang Z, Huang Y, Fan H, Liu Z. Biocontrol potential of saline- or alkaline-tolerant Trichoderma asperellum mutants against three pathogenic fungi under saline or alkaline stress conditions. Braz J Microbiol 2018; 49 Suppl 1:236-245. [PMID: 29691191 PMCID: PMC6328716 DOI: 10.1016/j.bjm.2018.02.008] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2017] [Revised: 01/26/2018] [Accepted: 02/14/2018] [Indexed: 11/30/2022] Open
Abstract
Salinity and alkalinity are major abiotic stresses that limit growth and development of poplar. We investigated biocontrol potential of saline- and alkaline-tolerant mutants of Trichoderma asperellum to mediate the effects of salinity or alkalinity stresses on Populus davidiana×P. alba var. pyramidalis (PdPap poplar) seedlings. A T-DNA insertion mutant library of T. asperellum was constructed using an Agrobacterium tumefaciens mediated transformation system; this process yielded sixty five positive transformants (T1-T65). The salinity tolerant mutant, T59, grew in Potato Dextrose Agar (PDA) containing up to 10% (1709.40mM) NaCl. Under NaCl-rich conditions, T59 was most effective in inhibiting Alternaria alternata (52.00%). The alkalinity tolerant mutants, T3 and T5, grew in PDA containing up to 0.4% (47.62mM) NaHCO3. The ability of the T3 and T5 mutants to inhibit Fusarium oxysporum declined as NaHCO3 concentrations increased. NaHCO3 tolerance of the PdPap seedlings improved following treatment with the spores of the WT, T3, and T5 strains. The salinity tolerant mutant (T59) and two alkalinity tolerant mutants (T3 and T5) generated in this study can be applied to decrease the incidence of pathogenic fungi infection under saline or alkaline stress.
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Affiliation(s)
- Ruiting Guo
- Northeast Forestry University, School of Forestry, Harbin, China
| | - Zhiying Wang
- Northeast Forestry University, School of Forestry, Harbin, China
| | - Ying Huang
- Northeast Forestry University, School of Forestry, Harbin, China
| | - Haijuan Fan
- Northeast Forestry University, School of Forestry, Harbin, China
| | - Zhihua Liu
- Northeast Forestry University, School of Forestry, Harbin, China.
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Poyedinok NL, Blume YB. Advances, Problems, and Prospects of Genetic Transformation of Fungi. CYTOL GENET+ 2018. [DOI: 10.3103/s009545271802007x] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Wang R, Yang J, Zhang G, Chao Y, Li Z, Ye Q, Qian S. Co-expression of Beta-Glucosidase and Laccase in Trichoderma reesei by Random Insertion with Enhanced Filter Paper Activity. Mol Biotechnol 2017; 59:353-364. [DOI: 10.1007/s12033-017-0018-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Liu N, Chen GQ, Ning GA, Shi HB, Zhang CL, Lu JP, Mao LJ, Feng XX, Liu XH, Su ZZ, Lin FC. Agrobacterium tumefaciens-mediated transformation: An efficient tool for insertional mutagenesis and targeted gene disruption in Harpophora oryzae. Microbiol Res 2015; 182:40-8. [PMID: 26686612 DOI: 10.1016/j.micres.2015.09.008] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2015] [Revised: 09/22/2015] [Accepted: 09/28/2015] [Indexed: 12/01/2022]
Abstract
The endophytic filamentous fungus Harpophora oryzae is a beneficial endosymbiont isolated from the wild rice. H. oryzae could not only effectively improve growth rate and biomass yield of rice crops, but also induce systemic resistance against the rice blast fungus, Magnaporthe oryzae. In this study, Agrobacterium tumefaciens-mediated transformation (ATMT) was employed and optimized to modify the H. oryzae genes by either random DNA fragment integration or targeted gene replacement. Our results showed that co-cultivation of H. oryzae conidia with A. tumefaciens in the presence of acetosyringone for 48 h at 22 °C could lead to a relatively highest frequency of transformation, and 200 μM acetosyringone (AS) pre-cultivation of A. tumefaciens is also suggested. ATMT-mediated knockout mutagenesis was accomplished with the gene-deletion cassettes using a yeast homologous recombination method with a yeast-Escherichia-Agrobacterium shuttle vector pKOHo. Using the ATMT-mediated knockout mutagenesis, we successfully deleted three genes of H. oryzae (HoATG5, HoATG7, and HoATG8), and then got the null mutants ΔHoatg5, ΔHoatg7, and ΔHoatg8. These results suggest that ATMT is an efficient tool for gene modification including randomly insertional mutagenesis and gene deletion mutagenesis in H. oryzae.
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Affiliation(s)
- Ning Liu
- State Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China
| | - Guo-Qing Chen
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Guo-Ao Ning
- State Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China
| | - Huan-Bin Shi
- State Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China
| | - Chu-Long Zhang
- State Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China
| | - Jian-Ping Lu
- College of Life Sciences, Zhejiang University, Hangzhou 310058, China
| | - Li-Juan Mao
- Analysis Center of Agrobiology and Environmental Science, Zhejiang University, Hangzhou, China
| | - Xiao-Xiao Feng
- State Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China
| | - Xiao-Hong Liu
- State Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China
| | - Zhen-Zhu Su
- State Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China.
| | - Fu-Cheng Lin
- State Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, China; China Tobacco Gene Research Center, Zhengzhou Tobacco Institute of CNTC, Zhengzhou, China.
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Zhang J, Bayram Akcapinar G, Atanasova L, Rahimi MJ, Przylucka A, Yang D, Kubicek CP, Zhang R, Shen Q, Druzhinina IS. The neutral metallopeptidase NMP1 ofTrichoderma guizhouenseis required for mycotrophy and self-defence. Environ Microbiol 2015; 18:580-97. [DOI: 10.1111/1462-2920.12966] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2015] [Revised: 06/18/2015] [Accepted: 06/20/2015] [Indexed: 11/26/2022]
Affiliation(s)
- Jian Zhang
- Jiangsu Key Lab for Organic Waste Utilization and National Engineering Research Center for Organic-based Fertilizers; Nanjing Agricultural University; Nanjing China
| | - Gunseli Bayram Akcapinar
- Microbiology Group; Research Area Biotechnology and Microbiology; Institute of Chemical Engineering; Vienna University of Technology; Vienna Austria
| | - Lea Atanasova
- Microbiology Group; Research Area Biotechnology and Microbiology; Institute of Chemical Engineering; Vienna University of Technology; Vienna Austria
| | - Mohammad Javad Rahimi
- Microbiology Group; Research Area Biotechnology and Microbiology; Institute of Chemical Engineering; Vienna University of Technology; Vienna Austria
| | | | - Dongqing Yang
- Jiangsu Key Lab for Organic Waste Utilization and National Engineering Research Center for Organic-based Fertilizers; Nanjing Agricultural University; Nanjing China
| | - Christian P. Kubicek
- Microbiology Group; Research Area Biotechnology and Microbiology; Institute of Chemical Engineering; Vienna University of Technology; Vienna Austria
| | - Ruifu Zhang
- Jiangsu Key Lab for Organic Waste Utilization and National Engineering Research Center for Organic-based Fertilizers; Nanjing Agricultural University; Nanjing China
| | - Qirong Shen
- Jiangsu Key Lab for Organic Waste Utilization and National Engineering Research Center for Organic-based Fertilizers; Nanjing Agricultural University; Nanjing China
| | - Irina S. Druzhinina
- Microbiology Group; Research Area Biotechnology and Microbiology; Institute of Chemical Engineering; Vienna University of Technology; Vienna Austria
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Isolation of sequences flanking the Trichoderma asperellum task1 gene using a single specific primer PCR and their use for gene knockout. ANN MICROBIOL 2012. [DOI: 10.1007/s13213-011-0410-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
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Development of a simple and efficient transformation system for the basidiomycetous medicinal fungus Ganoderma lucidum. World J Microbiol Biotechnol 2011; 28:283-91. [DOI: 10.1007/s11274-011-0818-z] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2010] [Accepted: 06/10/2011] [Indexed: 10/18/2022]
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Heterologous expression of an endo-β-1,4-glucanase gene from the anaerobic fungus Orpinomyces PC-2 in Trichoderma reesei. World J Microbiol Biotechnol 2011. [DOI: 10.1007/s11274-011-0774-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Zheng Z, Huang C, Cao L, Xie C, Han R. Agrobacterium tumefaciens-mediated transformation as a tool for insertional mutagenesis in medicinal fungus Cordyceps militaris. Fungal Biol 2011; 115:265-74. [DOI: 10.1016/j.funbio.2010.12.011] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2010] [Revised: 12/20/2010] [Accepted: 12/20/2010] [Indexed: 11/24/2022]
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Sun W, Chen Y, Liu L, Tang J, Chen J, Liu P. Conidia immobilization of T-DNA inserted Trichoderma atroviride mutant AMT-28 with dichlorvos degradation ability and exploration of biodegradation mechanism. BIORESOURCE TECHNOLOGY 2010; 101:9197-9203. [PMID: 20685111 DOI: 10.1016/j.biortech.2010.07.059] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2010] [Revised: 07/13/2010] [Accepted: 07/14/2010] [Indexed: 05/29/2023]
Abstract
An immobilizing conidia approach was used to study the degradation ability of dichlorvos in Trichoderma atroviride T-DNA insertional mutant AMT-28. Beads with 10(7) immobilized conidia per 100 mL of Na-alginate solution exhibited the highest degradation abilities. The immobilized conidia showed enhanced degradation abilities compared with immobilized or freely suspended mycelia. The immobilized cells kept good storage capacity and reusability. Dichlorvos was confirmed to be completely removed by mycelia of AMT-28 within 7 days using HPLC analysis. The dichlorvos degradation rates in auxotrophic Burk media varied and were significantly affected by nitrogen sources. There was no detectable biosorption and the removal of dichlorvos in AMT-28 was primarily attributed to a kind of Biomineralization process.
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Affiliation(s)
- Wenliang Sun
- College of Chemistry and Life Sciences, Zhejiang Normal University, Jinhua 321004, China
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Ning J, Bai Z, Gang G, Jiang D, Hu Q, He J, Zhang H, Zhuang G. Functional assembly of bacterial communities with activity for the biodegradation of an organophosphorus pesticide in the rape phyllosphere. FEMS Microbiol Lett 2010; 306:135-43. [DOI: 10.1111/j.1574-6968.2010.01946.x] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
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