1
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Karbelkar A, Ahlmark R, Zhou X, Austin K, Fan G, Yang VY, Furst A. Carbon Electrode-Based Biosensing Enabled by Biocompatible Surface Modification with DNA and Proteins. Bioconjug Chem 2023; 34:358-365. [PMID: 36633230 DOI: 10.1021/acs.bioconjchem.2c00542] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Modification of electrodes with biomolecules is an essential first step for the development of bioelectrochemical systems, which are used in a variety of applications ranging from sensors to fuel cells. Gold is often used because of its ease of modification with thiolated biomolecules, but carbon screen-printed electrodes (SPEs) are gaining popularity due to their low cost and fabrication from abundant resources. However, their effective modification with biomolecules remains a challenge; the majority of work to-date relies on nonspecific adhesion or broad amide bond formation to chemical handles on the electrode surface. By combining facile electrochemical modification to add an aniline handle to electrodes with a specific and biocompatible oxidative coupling reaction, we can readily modify carbon electrodes with a variety of biomolecules. Importantly, both proteins and DNA maintain bioactive conformations following coupling. We have then used biomolecule-modified electrodes to generate microbial monolayers through DNA-directed immobilization. This work provides an easy, general strategy to modify inexpensive carbon electrodes, significantly expanding their potential as bioelectrochemical systems.
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Affiliation(s)
- Amruta Karbelkar
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Rachel Ahlmark
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Xingcheng Zhou
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Katherine Austin
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Gang Fan
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Victoria Y Yang
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
| | - Ariel Furst
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States.,Center for Environmental Health Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts02139, United States
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2
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Häuser L, Erben J, Pillot G, Kerzenmacher S, Dreher W, Küstermann E. In vivo characterization of electroactive biofilms inside porous electrodes with MR Imaging. RSC Adv 2022; 12:17784-17793. [PMID: 35765339 PMCID: PMC9199086 DOI: 10.1039/d2ra01162j] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 05/30/2022] [Indexed: 12/03/2022] Open
Abstract
Identifying the limiting processes of electroactive biofilms is key to improve the performance of bioelectrochemical systems (BES). For modelling and developing BES, spatial information of transport phenomena and biofilm distribution are required and can be determined by Magnetic Resonance Imaging (MRI) in vivo, in situ and in operando even inside opaque porous electrodes. A custom bioelectrochemical cell was designed that allows MRI measurements with a spatial resolution of 50 μm inside a 500 μm thick porous carbon electrode. The MRI data showed that only a fraction of the electrode pore space is colonized by the Shewanella oneidensis MR-1 biofilm. The maximum biofilm density was observed inside the porous electrode close to the electrode-medium interface. Inside the biofilm, mass transport by diffusion is lowered down to 45% compared to the bulk growth medium. The presented data and the methods can be used for detailed models of bioelectrochemical systems and for the design of improved electrode structures. The use of magnetic resonance imaging can contribute to a better understanding of limiting processes occurring in electroactive biofilms especially inside opaque porous electrodes.![]()
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Affiliation(s)
- Luca Häuser
- Center for Environmental Research and Sustainable Technology (UFT), University of Bremen 28359 Bremen Germany
| | | | - Guillaume Pillot
- Center for Environmental Research and Sustainable Technology (UFT), University of Bremen 28359 Bremen Germany
| | - Sven Kerzenmacher
- Center for Environmental Research and Sustainable Technology (UFT), University of Bremen 28359 Bremen Germany
| | - Wolfgang Dreher
- In-vivo-MR Group, Faculty 02 (Biology/Chemistry), University of Bremen 28359 Bremen Germany
| | - Ekkehard Küstermann
- In-vivo-MR Group, Faculty 02 (Biology/Chemistry), University of Bremen 28359 Bremen Germany
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3
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Pötschke L, Huber P, Stegschuster G, Schriever S, Kroppen N, Schmatz J, Gries T, Blank LM, Farber P, Rosenbaum MA. Customized Woven Carbon Fiber Electrodes for Bioelectrochemical Systems—A Study of Structural Parameters. FRONTIERS IN CHEMICAL ENGINEERING 2022. [DOI: 10.3389/fceng.2022.765682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Commercial carbon fiber (CF) fabrics are popular electrode materials for bioelectrochemical systems (BES), but are usually not optimized for the specific application. This study investigates BES-relevant material characteristics on fabric level, such as weave types and weave parameters. The two contrasting weave types plain and leno weave were characterized with respect to their envisaged application types: 1) BES with mainly advective flow regimes and 2) stirred systems, which could benefit from fluid flow through a fabric electrode. Experiments with batch and continuously fed pure cultures of Geobacter sulfurreducens PCA and Shewanella oneidensis MR-1 reveal that µm-scale electrode topologies are of limited use for the thick biofilms of G. sulfurreducens, but can boost S. oneidensis’ current generation especially in batch and fed-batch reactors. For advective flow regimes, deeper layers of biofilm inside microporous electrodes are often mass transport limited, even with thin biofilms of S. oneidensis. Therefore, low porosity plain weave electrodes for advective flow operation as in wastewater treating BES should be thin and flat. A trade-off between maximized current density and electrode material utilization exists, which is optimized exemplarily for an advective flow operation. For stirred BES of biotechnological applications, a flow-through of electrolyte is desired. For this, leno weave fabrics with pores at cm-scale are produced from 100% CF for the first time. In a preliminary evaluation, they outperform plain weave fabrics. Mass transfer investigations in stirred BES demonstrate that the large pores enable efficient electrode utilization at lower power input in terms of stirring speed.
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4
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Tseng CP, Liu F, Zhang X, Huang PC, Campbell I, Li Y, Atkinson JT, Terlier T, Ajo-Franklin CM, Silberg JJ, Verduzco R. Solution-Deposited and Patternable Conductive Polymer Thin-Film Electrodes for Microbial Bioelectronics. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2022; 34:e2109442. [PMID: 35088918 DOI: 10.1002/adma.202109442] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2021] [Revised: 01/21/2022] [Indexed: 06/14/2023]
Abstract
Microbial bioelectronic devices integrate naturally occurring or synthetically engineered electroactive microbes with microelectronics. These devices have a broad range of potential applications, but engineering the biotic-abiotic interface for biocompatibility, adhesion, electron transfer, and maximum surface area remains a challenge. Prior approaches to interface modification lack simple processability, the ability to pattern the materials, and/or a significant enhancement in currents. Here, a novel conductive polymer coating that significantly enhances current densities relative to unmodified electrodes in microbial bioelectronics is reported. The coating is based on a blend of poly(3,4-ethylenedioxythiophene)-poly(styrenesulfonate) (PEDOT:PSS) crosslinked with poly(2-hydroxyethylacrylate) (PHEA) along with a thin polydopamine (PDA) layer for adhesion to an underlying indium tin oxide (ITO) electrode. When used as an interface layer with the current-producing bacterium Shewanella oneidensis MR-1, this material produces a 178-fold increase in the current density compared to unmodified electrodes, a current gain that is higher than previously reported thin-film 2D coatings and 3D conductive polymer coatings. The chemistry, morphology, and electronic properties of the coatings are characterized and the implementation of these coated electrodes for use in microbial fuel cells, multiplexed bioelectronic devices, and organic electrochemical transistor based microbial sensors are demonstrated. It is envisioned that this simple coating will advance the development of microbial bioelectronic devices.
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Affiliation(s)
- Chia-Ping Tseng
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, TX, 77005, USA
| | - Fangxin Liu
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, TX, 77005, USA
| | - Xu Zhang
- Department of BioSciences, Rice University, Houston, TX, 77005, USA
| | - Po-Chun Huang
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, TX, 77005, USA
| | - Ian Campbell
- Department of BioSciences, Rice University, Houston, TX, 77005, USA
| | - Yilin Li
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, TX, 77005, USA
| | - Joshua T Atkinson
- Department of Physics and Astronomy, University of Southern California, Los Angeles, CA, 90007, USA
| | - Tanguy Terlier
- SIMS Laboratory, Shared Equipment Authority, Rice University, Houston, TX, 77005, USA
| | | | | | - Rafael Verduzco
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, TX, 77005, USA
- Department of Materials Science and NanoEngineering, Rice University, Houston, TX, 77005, USA
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5
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Vázquez RJ, McCuskey SR, Quek G, Su Y, Llanes L, Hinks J, Bazan GC. Conjugated Polyelectrolyte/Bacteria Living Composites in Carbon Paper for Biocurrent Generation. Macromol Rapid Commun 2022; 43:e2100840. [PMID: 35075724 DOI: 10.1002/marc.202100840] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Revised: 01/05/2022] [Indexed: 11/08/2022]
Abstract
Successful practical implementation of bioelectrochemical systems requires developing affordable electrode structures that promote efficient electrical communication with microbes. Recent efforts have centered on immobilizing bacteria with organic semiconducting polymers on electrodes via electrochemical methods. This approach creates a fixed biocomposite that takes advantage of the increased electrode's electroactive surface area (EASA). Here, we demonstrate that a biocomposite comprising the water-soluble conjugated polyelectrolyte CPE-K and electrogenic Shewanella oneidensis MR-1 can self-assemble with carbon paper electrodes, thereby increasing its biocurrent extraction by ∼ 6-fold over control biofilms. A ∼ 1.5-fold increment in biocurrent extraction was obtained for the biocomposite on carbon paper relative to the biocurrent extracted from gold-coated counterparts. Electrochemical characterization revealed that the biocomposite stabilized with the carbon paper more quickly than atop flat gold electrodes. Cross-sectional images show that the biocomposite infiltrates inhomogeneously into the porous carbon structure. Despite an incomplete penetration, the biocomposite can take advantage of the large EASA of the electrode via long-range electron transport. These results show that previous success on gold electrode platforms can be improved when using more commercially viable and easily manipulated electrode materials. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Ricardo Javier Vázquez
- Department of Chemistry and Chemical & Biomolecular Engineering, National University of Singapore, Singapore, 119077, Singapore
| | - Samantha R McCuskey
- Department of Chemistry and Chemical & Biomolecular Engineering, National University of Singapore, Singapore, 119077, Singapore
| | - Glenn Quek
- Department of Chemistry and Chemical & Biomolecular Engineering, National University of Singapore, Singapore, 119077, Singapore
| | - Yude Su
- Suzhou Institute of Advanced Research, University of Science and Technology of China, Suzhou, Jiangsu, 215123, China
| | - Luana Llanes
- Department of Chemistry and Biochemistry, University of California, Santa Barbara, CA, USA
| | - Jamie Hinks
- Singapore Centre on Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University, Singapore, 637551, Singapore
| | - Guillermo C Bazan
- Department of Chemistry and Chemical & Biomolecular Engineering, National University of Singapore, Singapore, 119077, Singapore
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6
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Erben J, Pinder ZA, Lüdtke MS, Kerzenmacher S. Local Acidification Limits the Current Production and Biofilm Formation of Shewanella oneidensis MR-1 With Electrospun Anodes. Front Microbiol 2021; 12:660474. [PMID: 34194407 PMCID: PMC8236948 DOI: 10.3389/fmicb.2021.660474] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 05/03/2021] [Indexed: 11/30/2022] Open
Abstract
The anodic current production of Shewanella oneidensis MR-1 is typically lower compared to other electroactive bacteria. The main reason for the low current densities is the poor biofilm growth on most anode materials. We demonstrate that the high current production of Shewanella oneidensis MR-1 with electrospun anodes exhibits a similar threshold current density as dense Geobacter spp biofilms. The threshold current density is a result of local acidification in the biofilm. Increasing buffer concentration from 10 to 40 mM results in a 1.8-fold increase of the current density [(590 ± 25) μA cm−2] while biofilm growth stimulation by riboflavin has little effect on the current production. The current production of a reference material below the threshold did not respond to the increased buffer concentration but could be enhanced by supplemented riboflavin that stimulated the biofilm growth. Our results suggest that the current production with S. oneidensis is limited (1) by the biofilm growth on the anode that can be enhanced by the choice of the electrode material, and (2) by the proton transport through the biofilm and the associated local acidification.
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Affiliation(s)
- Johannes Erben
- Center for Environmental Research and Sustainable Technology (UFT), University of Bremen, Bremen, Germany
| | | | - Malte S Lüdtke
- Center for Environmental Research and Sustainable Technology (UFT), University of Bremen, Bremen, Germany
| | - Sven Kerzenmacher
- Center for Environmental Research and Sustainable Technology (UFT), University of Bremen, Bremen, Germany
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7
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Erben J, Wang X, Kerzenmacher S. High Current Production of
Shewanella Oneidensis
with Electrospun Carbon Nanofiber Anodes is Directly Linked to Biofilm Formation**. ChemElectroChem 2021. [DOI: 10.1002/celc.202100192] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Johannes Erben
- Center for Environmental Research and Sustainable Technology (UFT) University of Bremen 28359 Bremen Germany
| | - Xinyu Wang
- Laboratory for MEMS Applications IMTEK – Department of Microsystems Engineering University of Freiburg Georges-Koehler-Allee 103 79110 Freiburg Germany
| | - Sven Kerzenmacher
- Center for Environmental Research and Sustainable Technology (UFT) University of Bremen 28359 Bremen Germany
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8
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Erben J, Heußner A, Thiele S, Kerzenmacher S. Activation of electrospun carbon fibers: the effect of fiber diameter on CO2 and steam reaction kinetics. JOURNAL OF POLYMER RESEARCH 2021. [DOI: 10.1007/s10965-020-02386-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
AbstractFirst, we present a fabrication process for electrospun carbon fiber mats with mean fiber diameters between 108 nm and 623 nm. The carbon fiber mats were produced by electrospinning of polyacrylonitrile (PAN) solutions and subsequent carbonization. The fiber mats feature small variations of their properties that are required for parameter studies. Second, we investigate the kinetics of steam and CO2 activation with three different activation temperatures and times. Both activation methods result in a surface area increase depending on activation temperature and time. Detailed analysis of the macroscopic properties burn-off, surface area, and conductivity reveals insights into the microscopic activation kinetics. The different fiber diameters of the carbon fiber mats enable the distinction of surface driven and bulk processes. Our results indicate, that CO2 activation kinetics are mass transport controlled, and that steam activation kinetics are reaction rate controlled. The turbostratic nature of PAN derived carbon and the distinct characteristics of the activation agents could explain the nonlinear behavior of the burn-off and surface area development.
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9
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Status Update on Bioelectrochemical Systems: Prospects for Carbon Electrode Design and Scale-Up. Catalysts 2021. [DOI: 10.3390/catal11020278] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
Bioelectrochemical systems (BES) employ enzymes, subcellular structures or whole electroactive microorganisms as biocatalysts for energy conversion purposes, such as the electrosynthesis of value-added chemicals and power generation in biofuel cells. From a bioelectrode engineering viewpoint, customizable nanostructured carbonaceous matrices have recently received considerable scientific attention as promising electrode supports due to their unique properties attractive to bioelectronics devices. This review demonstrates the latest advances in the application of nano- and micro-structured carbon electrode assemblies in BES. Specifically, in view of the gradual increase in the commercial applicability of these systems, we aim to address the stability and scalability of different BES designs and to highlight their potential roles in a circular bioeconomy.
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10
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Mahmoud RH, Samhan FA, Ibrahim MK, Ali GH, Hassan RYA. Formation of electroactive biofilms derived by nanostructured anodes surfaces. Bioprocess Biosyst Eng 2021; 44:759-768. [PMID: 33420818 DOI: 10.1007/s00449-020-02485-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Accepted: 11/16/2020] [Indexed: 11/27/2022]
Abstract
Microbial fuel cells (MFCs) have significant interest in the research community due to their ability to generate electricity from biodegradable organic matters. Anode materials and their morphological structures play a crucial role in the formation of electroactive biofilms that enable the direct electron transfer. In this work, modified electrodes with nanomaterials, such as multiwalled carbon nanotubes (MWCNTs), reduced graphene oxide (rGO), Al2O3/rGO or MnO2/MWCNTs nanocomposites were synthesized, characterized and utilized to support the growth of electrochemically active biofilms. The MFC's performance is optimized using anode-respiring strains isolated from biofilm-anode surface, while the adjusted operation is conducted with the consortium of (Enterobacter sp.). Besides the formation of matured biofilm on its surface, MnO2/MWCNTs nanocomposite produced the highest electrical potential outputs (710 mV) combined with the highest power density (372 mW/m2). Thus, a correlation between the anode nanostructured materials and the progression of the electrochemically active biofilms formation is presented, allowing new thoughts for enhancing the MFC's performance for potential applications ranging from wastewater treatment to power sources.
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Affiliation(s)
- Rehab H Mahmoud
- Water Pollution Research Department, National Research Centre (NRC), Dokki, Giza, 12622, Egypt
| | - Farag A Samhan
- Water Pollution Research Department, National Research Centre (NRC), Dokki, Giza, 12622, Egypt
| | | | - Gamila H Ali
- Water Pollution Research Department, National Research Centre (NRC), Dokki, Giza, 12622, Egypt
| | - Rabeay Y A Hassan
- Applied Organic Chemistry Department, National Research Centre (NRC), Dokki, Giza, 12622, Egypt.
- Nanoscience Program, University of Science and Technology (UST), Zewail City of Science and Technology, 6th October City, Giza, 12578, Egypt.
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11
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Engineering S. oneidensis for Performance Improvement of Microbial Fuel Cell-a Mini Review. Appl Biochem Biotechnol 2020; 193:1170-1186. [PMID: 33200267 DOI: 10.1007/s12010-020-03469-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2019] [Accepted: 11/09/2020] [Indexed: 02/02/2023]
Abstract
Microbial fuel cell (MFC) is a promising technology that utilizes exoelectrogens cultivated in the form of biofilm to generate power from various types of sources supplied. A metal-reducing pathway is utilized by these organisms to transfer electrons obtained from the metabolism of substrate from anaerobic respiration extracellularly. A widely established model organism that is capable of extracellular electron transfer (EET) is Shewanella oneidensis. This review highlights the strategies used in the transformation of S. oneidensis and the recent development of MFC in terms of intervention through genetic modifications. S. oneidensis was genetically engineered for several aims including the study on the underlying mechanisms of EET, and the enhancement of power generation and wastewater treating potential when used in an MFC. Through engineering S. oneidensis, genes responsible for EET are identified and strategies on enhancing the EET efficiency are studied. Overexpressing genes related to EET to enhance biofilm formation, mediator biosynthesis, and respiration appears as one of the common approaches.
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12
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Chen H, Simoska O, Lim K, Grattieri M, Yuan M, Dong F, Lee YS, Beaver K, Weliwatte S, Gaffney EM, Minteer SD. Fundamentals, Applications, and Future Directions of Bioelectrocatalysis. Chem Rev 2020; 120:12903-12993. [DOI: 10.1021/acs.chemrev.0c00472] [Citation(s) in RCA: 118] [Impact Index Per Article: 29.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Hui Chen
- Department of Chemistry, University of Utah, 315 South 1400 East, RM 2020, Salt Lake City, Utah 84112, United States
| | - Olja Simoska
- Department of Chemistry, University of Utah, 315 South 1400 East, RM 2020, Salt Lake City, Utah 84112, United States
| | - Koun Lim
- Department of Chemistry, University of Utah, 315 South 1400 East, RM 2020, Salt Lake City, Utah 84112, United States
| | - Matteo Grattieri
- Department of Chemistry, University of Utah, 315 South 1400 East, RM 2020, Salt Lake City, Utah 84112, United States
| | - Mengwei Yuan
- Department of Chemistry, University of Utah, 315 South 1400 East, RM 2020, Salt Lake City, Utah 84112, United States
| | - Fangyuan Dong
- Department of Chemistry, University of Utah, 315 South 1400 East, RM 2020, Salt Lake City, Utah 84112, United States
| | - Yoo Seok Lee
- Department of Chemistry, University of Utah, 315 South 1400 East, RM 2020, Salt Lake City, Utah 84112, United States
| | - Kevin Beaver
- Department of Chemistry, University of Utah, 315 South 1400 East, RM 2020, Salt Lake City, Utah 84112, United States
| | - Samali Weliwatte
- Department of Chemistry, University of Utah, 315 South 1400 East, RM 2020, Salt Lake City, Utah 84112, United States
| | - Erin M. Gaffney
- Department of Chemistry, University of Utah, 315 South 1400 East, RM 2020, Salt Lake City, Utah 84112, United States
| | - Shelley D. Minteer
- Department of Chemistry, University of Utah, 315 South 1400 East, RM 2020, Salt Lake City, Utah 84112, United States
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13
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Uria N, Fiset E, Pellitero MA, Muñoz F, Rabaey K, Campo F. Immobilisation of electrochemically active bacteria on screen-printed electrodes for rapid in situ toxicity biosensing. ENVIRONMENTAL SCIENCE AND ECOTECHNOLOGY 2020; 3:100053. [PMID: 36159604 PMCID: PMC9488082 DOI: 10.1016/j.ese.2020.100053] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Revised: 07/07/2020] [Accepted: 07/07/2020] [Indexed: 06/12/2023]
Abstract
Microbial biosensors can be an excellent alternative to classical methods for toxicity monitoring, which are time-consuming and not sensitive enough. However, bacteria typically connect to electrodes through biofilm formation, leading to problems due to lack of uniformity or long device production times. A suitable immobilisation technique can overcome these challenges. Still, they may respond more slowly than biofilm-based electrodes because bacteria gradually adapt to electron transfer during biofilm formation. In this study, we propose a controlled and reproducible way to fabricate bacteria-modified electrodes. The method consists of an immobilisation step using a cellulose matrix, followed by an electrode polarization in the presence of ferricyanide and glucose. Our process is short, reproducible and led us to obtain ready-to-use electrodes featuring a high-current response. An excellent shelf-life of the immobilised electrochemically active bacteria was demonstrated for up to one year. After an initial 50% activity loss in the first month, no further declines have been observed over the following 11 months. We implemented our bacteria-modified electrodes to fabricate a lateral flow platform for toxicity monitoring using formaldehyde (3%). Its addition led to a 59% current decrease approximately 20 min after the toxic input. The methods presented here offer the ability to develop a high sensitivity, easy to produce, and long shelf life bacteria-based toxicity detectors.
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Affiliation(s)
- N. Uria
- Institut de Microelectrònica de Barcelona, IMB-CNM (CSIC), 08193, Esfera UAB, 08193, Bellaterra, Barcelona, Spain
- Arkyne Technologies SL (Bioo) ES-B90229261, Carrer de La Tecnologia, 17, 08840, Viladecans, Barcelona, Spain
| | - E. Fiset
- Center for Microbial Ecology and Technology (CMET) – FBE – Ghent University, Ghent, Belgium
| | - M. Aller Pellitero
- Institut de Microelectrònica de Barcelona, IMB-CNM (CSIC), 08193, Esfera UAB, 08193, Bellaterra, Barcelona, Spain
| | - F.X. Muñoz
- Institut de Microelectrònica de Barcelona, IMB-CNM (CSIC), 08193, Esfera UAB, 08193, Bellaterra, Barcelona, Spain
| | - K. Rabaey
- Center for Microbial Ecology and Technology (CMET) – FBE – Ghent University, Ghent, Belgium
- CAPTURE, Belgium
| | - F.J.del Campo
- Institut de Microelectrònica de Barcelona, IMB-CNM (CSIC), 08193, Esfera UAB, 08193, Bellaterra, Barcelona, Spain
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14
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Chen H, Dong F, Minteer SD. The progress and outlook of bioelectrocatalysis for the production of chemicals, fuels and materials. Nat Catal 2020. [DOI: 10.1038/s41929-019-0408-2] [Citation(s) in RCA: 105] [Impact Index Per Article: 26.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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15
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Biofilm systems as tools in biotechnological production. Appl Microbiol Biotechnol 2019; 103:5095-5103. [PMID: 31079168 DOI: 10.1007/s00253-019-09869-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2019] [Revised: 04/23/2019] [Accepted: 04/24/2019] [Indexed: 01/08/2023]
Abstract
The literature provides more and more examples of research projects that develop novel production processes based on microorganisms organized in the form of biofilms. Biofilms are aggregates of microorganisms that are attached to interfaces. These viscoelastic aggregates of cells are held together and are embedded in a matrix consisting of multiple carbohydrate polymers as well as proteins. Biofilms are characterized by a very high cell density and by a natural retentostat behavior. Both factors can contribute to high productivities and a facilitated separation of the desired end-product from the catalytic biomass. Within the biofilm matrix, stable gradients of substrates and products form, which can lead to a differentiation and adaptation of the microorganisms' physiology to the specific process conditions. Moreover, growth in a biofilm state is often accompanied by a higher resistance and resilience towards toxic or growth inhibiting substances and factors. In this short review, we summarize how biofilms can be studied and what most promising niches for their application can be. Moreover, we highlight future research directions that will accelerate the advent of productive biofilms in biology-based production processes.
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16
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PEDOT:PSS-based Multilayer Bacterial-Composite Films for Bioelectronics. Sci Rep 2018; 8:15293. [PMID: 30327574 PMCID: PMC6191412 DOI: 10.1038/s41598-018-33521-9] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2018] [Accepted: 09/21/2018] [Indexed: 12/22/2022] Open
Abstract
Microbial electrochemical systems provide an environmentally-friendly means of energy conversion between chemical and electrical forms, with applications in wastewater treatment, bioelectronics, and biosensing. However, a major challenge to further development, miniaturization, and deployment of bioelectronics and biosensors is the limited thickness of biofilms, necessitating large anodes to achieve sufficient signal-to-noise ratios. Here we demonstrate a method for embedding an electroactive bacterium, Shewanella oneidensis MR-1, inside a conductive three-dimensional poly(3,4-ethylenedioxythiophene):poly(styrenesulfonate) (PEDOT:PSS) matrix electropolymerized on a carbon felt substrate, which we call a multilayer conductive bacterial-composite film (MCBF). By mixing the bacteria with the PEDOT:PSS precursor in a flow-through method, we maintain over 90% viability of S. oneidensis during encapsulation. Microscopic analysis of the MCBFs reveal a tightly interleaved structure of bacteria and conductive PEDOT:PSS up to 80 µm thick. Electrochemical experiments indicate S. oneidensis in MCBFs can perform both direct and riboflavin-mediated electron transfer to PEDOT:PSS. When used in bioelectrochemical reactors, the MCBFs produce 20 times more steady-state current than native biofilms grown on unmodified carbon felt. This versatile approach to control the thickness of bacterial composite films and increase their current output has immediate applications in microbial electrochemical systems, including field-deployable environmental sensing and direct integration of microorganisms into miniaturized organic electronics.
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Krieg T, Wood JA, Mangold KM, Holtmann D. Mass transport limitations in microbial fuel cells: Impact of flow configurations. Biochem Eng J 2018. [DOI: 10.1016/j.bej.2018.07.017] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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18
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Zou L, Qiao Y, Li CM. Boosting Microbial Electrocatalytic Kinetics for High Power Density: Insights into Synthetic Biology and Advanced Nanoscience. ELECTROCHEM ENERGY R 2018. [DOI: 10.1007/s41918-018-0020-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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19
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Kipf E, Sané S, Morse D, Messinger T, Zengerle R, Kerzenmacher S. An air-breathing enzymatic cathode with extended lifetime by continuous laccase supply. BIORESOURCE TECHNOLOGY 2018; 264:306-310. [PMID: 29857285 DOI: 10.1016/j.biortech.2018.04.086] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Revised: 04/19/2018] [Accepted: 04/20/2018] [Indexed: 06/08/2023]
Abstract
We present a novel concept of an air-breathing enzymatic biofuel cell cathode combined with continuous supply of unpurified laccase-containing supernatant of the white-rot fungus Trametes versicolor for extended lifetime. The air-breathing cathode design obviates the need for energy-intensive active aeration. In a corresponding long-term experiment at a constant current density of 50 µA cm-2, we demonstrated an increased lifetime of 33 days (cathode potential above 0.430 V vs. SCE), independent of enzyme degradation. The obtained data suggest that theoretically a longer lifetime is feasible. However, further engineering efforts are required to prevent clogging and fouling of the supply tubes. These results represent an important step towards the realization of enzymatic biofuel cell cathodes with extended lifetime and enhanced performance.
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Affiliation(s)
- Elena Kipf
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
| | - Sabine Sané
- Earth and Environmental Sciences, University College Freiburg, University of Freiburg, 79085 Freiburg, Germany
| | - Daniel Morse
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
| | - Thorsten Messinger
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany
| | - Roland Zengerle
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany; BIOSS - Centre for Biological Signalling Studies, University of Freiburg, 79110 Freiburg, Germany
| | - Sven Kerzenmacher
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany; Center for Environmental Research and Sustainable Technology (UFT), University of Bremen, Leobener Strasse 6, 28359 Bremen, Germany.
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Grießmeier V, Gescher J. Influence of the Potential Carbon Sources for Field Denitrification Beds on Their Microbial Diversity and the Fate of Carbon and Nitrate. Front Microbiol 2018; 9:1313. [PMID: 29988389 PMCID: PMC6023987 DOI: 10.3389/fmicb.2018.01313] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2018] [Accepted: 05/30/2018] [Indexed: 12/02/2022] Open
Abstract
Nitrogen based eutrophication of ecosystems is a global problem that gains momentum through a growing global population. The water quality of nitrate or ammonium contaminated rivers and streams cannot always be amended in centralized waste water treatment plants. Field denitrification plants were suggested as a solution for a decentralized reduction of nitrate to dinitrogen. Here, stable and cheap organic carbon sources serve as carbon and electron source for a microbial community. Still, our knowledge on the impact of these organic carbon sources on the development and diversity of these cultures is sparse. Moreover, the stability of these denitrification plants at different nitrate loading rates especially in the higher concentration regime were not tested so far. In this study, we compare the fate of carbon and nitrogen as well as the microbial community of wood pellet (WP) (pressed sawdust), wheat straw, and wood chips (WC) based laboratory denitrification reactors. Our study reveals that the diversity and composition of the community is strongly dependent on the carbon source. The diversity decreased in the order WC, wheat straw, and WPs. The three reactor types were characterized by different nitrate reduction kinetics and were affected differently by high nitrate loading rates. While the nitrate reduction kinetics were negatively influenced by higher nitrate doses in the wheat straw reactors, WPs as carbon source sustained the opposite trend and WC lead to an overall slower but concentration independent nitrate reduction rate. Counterintuitively, the concentration of soluble organic carbon was highest in the WP reactors but methane emission was not detectable. This is corroborated by the microbial diversity data in which methanogenic species were highly underrepresented compared to the other two reactor types. In contrary, the methane emissions in the wheat straw and WC reactors were comparable to each other.
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Affiliation(s)
- Victoria Grießmeier
- Department of Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Johannes Gescher
- Department of Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology, Karlsruhe, Germany.,Institute for Biological Interfaces, Karlsruhe Institute of Technology, Karlsruhe, Germany
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21
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Schmidt A, Sturm G, Lapp CJ, Siebert D, Saravia F, Horn H, Ravi PP, Lemmer A, Gescher J. Development of a production chain from vegetable biowaste to platform chemicals. Microb Cell Fact 2018; 17:90. [PMID: 29898726 PMCID: PMC6001048 DOI: 10.1186/s12934-018-0937-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2018] [Accepted: 05/30/2018] [Indexed: 01/09/2023] Open
Abstract
BACKGROUND A future bioeconomy relies on the development of technologies to convert waste into valuable compounds. We present here an attempt to design a biotechnological cascade for the conversion of vegetable waste into acetoin and electrical energy. RESULTS A vegetable waste dark fermentation effluent containing mainly acetate, butyrate and propionate was oxidized in a bioelectrochemical system. The achieved average current at a constant anode potential of 0 mV against standard hydrogen electrode was 177.5 ± 52.5 µA/cm2. During this step, acetate and butyrate were removed from the effluent while propionate was the major remaining component of the total organic carbon content comprising on average 75.6%. The key players with regard to carbon oxidation and electrode reduction were revealed using amplicon sequencing and metatranscriptomic analysis. Using nanofiltration, it was possible to concentrate the propionate in the effluent. The effluent was revealed to be a suitable medium for biotechnological production strains. As a proof of principle, the propionate in the effluent of the bioelectrochemical system was converted into the platform chemical acetoin with a carbon recovery of 86%. CONCLUSIONS To the best of our knowledge this is the first report on a full biotechnological production chain leading from vegetable waste to the production of a single valuable platform chemical that integrates carbon elimination steps leading to the production of the valuable side product electrical energy.
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Affiliation(s)
- Annemarie Schmidt
- Department Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Gunnar Sturm
- Department Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Christian Jonas Lapp
- Department Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Daniel Siebert
- Institute of Microbiology and Biotechnology, University of Ulm, Ulm, Germany
| | - Florencia Saravia
- Chair of Water Chemistry and Water Technology, Karlsruhe Institute of Technology, Engler-Bunte-Institut, Karlsruhe, Germany
| | - Harald Horn
- Chair of Water Chemistry and Water Technology, Karlsruhe Institute of Technology, Engler-Bunte-Institut, Karlsruhe, Germany
| | - Padma Priya Ravi
- State Institute of Agricultural Engineering and Bioenergy, University of Hohenheim, Stuttgart, Germany
| | - Andreas Lemmer
- State Institute of Agricultural Engineering and Bioenergy, University of Hohenheim, Stuttgart, Germany
| | - Johannes Gescher
- Department Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology, Karlsruhe, Germany. .,Institute for Biological Interfaces, Karlsruhe Institute of Technology, Karlsruhe, Germany.
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Systematic investigation of anode materials for microbial fuel cells with the model organism G . sulfurreducens. ACTA ACUST UNITED AC 2018. [DOI: 10.1016/j.biteb.2018.03.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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23
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Kokko M, Epple S, Gescher J, Kerzenmacher S. Effects of wastewater constituents and operational conditions on the composition and dynamics of anodic microbial communities in bioelectrochemical systems. BIORESOURCE TECHNOLOGY 2018; 258:376-389. [PMID: 29548640 DOI: 10.1016/j.biortech.2018.01.090] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2017] [Revised: 01/17/2018] [Accepted: 01/19/2018] [Indexed: 06/08/2023]
Abstract
Over the last decade, there has been an ever-growing interest in bioelectrochemical systems (BES) as a sustainable technology enabling simultaneous wastewater treatment and biological production of, e.g. electricity, hydrogen, and further commodities. A key component of any BES degrading organic matter is the anode where electric current is biologically generated from the oxidation of organic compounds. The performance of BES depends on the interactions of the anodic microbial communities. To optimize the operational parameters and process design of BES a better comprehension of the microbial community dynamics and interactions at the anode is required. This paper reviews the abundance of different microorganisms in anodic biofilms and discusses their roles and possible side reactions with respect to their implications on the performance of BES utilizing wastewaters. The most important operational parameters affecting anodic microbial communities grown with wastewaters are highlighted and guidelines for controlling the composition of microbial communities are given.
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Affiliation(s)
- Marika Kokko
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany; Laboratory of Chemistry and Bioengineering, Tampere University of Technology, Tampere, Finland
| | - Stefanie Epple
- Institute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Johannes Gescher
- Institute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Sven Kerzenmacher
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany; Center for Environmental Research and Sustainable Technology (UFT), University of Bremen, Leobener Strasse 6, 28359 Bremen, Germany.
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24
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Wang R, Yan M, Li H, Zhang L, Peng B, Sun J, Liu D, Liu S. FeS 2 Nanoparticles Decorated Graphene as Microbial-Fuel-Cell Anode Achieving High Power Density. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2018; 30:e1800618. [PMID: 29665169 DOI: 10.1002/adma.201800618] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2018] [Revised: 03/01/2018] [Indexed: 06/08/2023]
Abstract
Microbial fuel cells (MFCs) have received great attention worldwide due to their potential in recovering electrical energy from waste and inexhaustible biomass. Unfortunately, the difficulty of achieving the high power, especially in real samples, remains a bottleneck for their practical applications. Herein, FeS2 nanoparticles decorated graphene is fabricated via a simple hydrothermal reaction. The FeS2 nanoparticles decorated graphene anode not only benefits bacterial adhesion and enrichment of electrochemically active Geobacter species on the electrode surface but also promotes efficient extracellular electron transfer, thus giving rise to a fast start-up time of 2 d, an unprecedented power density of 3220 mW m-2 and a remarkable current density of 3.06 A m-2 in the acetate-feeding and mixed bacteria-based MFCs. Most importantly, the FeS2 nanoparticles decorated graphene anode successfully achieves a power density of 310 mW m-2 with simultaneous removal of 1319 ± 28 mg L-1 chemical oxygen demand in effluents from a beer factory wastewater. The characteristics of improved power generation and enhanced pollutant removal efficiency opens the door toward development of high-performance MFCs via rational anode design for practical application.
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Affiliation(s)
- Ruiwen Wang
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
| | - Mei Yan
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
- Micro- and Nanotechnology Research Center, Harbin Institute of Technology, Harbin, 150080, China
| | - Huidong Li
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
| | - Lu Zhang
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
| | - Benqi Peng
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
| | - Jinzhi Sun
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
| | - Da Liu
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
| | - Shaoqin Liu
- School of Life Science and Technology, State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150080, China
- Micro- and Nanotechnology Research Center, Harbin Institute of Technology, Harbin, 150080, China
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Krieg T, Phan LMP, Wood JA, Sydow A, Vassilev I, Krömer JO, Mangold KM, Holtmann D. Characterization of a membrane-separated and a membrane-less electrobioreactor for bioelectrochemical syntheses. Biotechnol Bioeng 2018; 115:1705-1716. [DOI: 10.1002/bit.26600] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2017] [Revised: 02/22/2018] [Accepted: 03/19/2018] [Indexed: 12/20/2022]
Affiliation(s)
- Thomas Krieg
- Industrial Biotechnology; DECHEMA Forschungsinstitut; Frankfurt am Main Hessen Germany
| | - Linh M. P. Phan
- Industrial Biotechnology; DECHEMA Forschungsinstitut; Frankfurt am Main Hessen Germany
| | - Jeffery A. Wood
- Soft Matter, Fluidics and Interfaces, Faculty of Science and Technology; University of Twente; Enschede The Netherlands
| | - Anne Sydow
- Industrial Biotechnology; DECHEMA Forschungsinstitut; Frankfurt am Main Hessen Germany
| | - Igor Vassilev
- Centre for Microbial Electrochemical Systems (CEMES); The University of Queensland; Brisbane Australia
- Advanced Water Management Centre (AWMC); The University of Queensland; Brisbane Australia
| | - Jens O. Krömer
- Centre for Microbial Electrochemical Systems (CEMES); The University of Queensland; Brisbane Australia
- Advanced Water Management Centre (AWMC); The University of Queensland; Brisbane Australia
- Department for Solar Materials; Helmholtz Centre for Environmental Research (UFZ); Leipzig Germany
| | | | - Dirk Holtmann
- Industrial Biotechnology; DECHEMA Forschungsinstitut; Frankfurt am Main Hessen Germany
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Reactors for Microbial Electrobiotechnology. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2018; 167:231-271. [PMID: 29651504 DOI: 10.1007/10_2017_40] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
From the first electromicrobial experiment to a sophisticated microbial electrochemical process - it all takes place in a reactor. Whereas the reactor design and materials used strongly influence the obtained results, there are no common platforms for MES reactors. This is a critical convention gap, as cross-comparison and benchmarking among MES as well as MES vs. conventional biotechnological processes is needed. Only knowledge driven engineering of MES reactors will pave the way to application and commercialization. In this chapter we first assess the requirements on reactors to be used for bioelectrochemical systems as well as potential losses caused by the reactor design. Subsequently, we compile the main types and designs of reactors used for MES so far, starting from simple H-cells to stirred tank reactors. We conclude with a discussion on the weaknesses and strengths of the existing types of reactors for bioelectrochemical systems that are scored on design criteria and draw conclusions for the future engineering of MES reactors.
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Grießmeier V, Bremges A, McHardy AC, Gescher J. Investigation of different nitrogen reduction routes and their key microbial players in wood chip-driven denitrification beds. Sci Rep 2017; 7:17028. [PMID: 29208961 PMCID: PMC5716999 DOI: 10.1038/s41598-017-17312-2] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2017] [Accepted: 11/24/2017] [Indexed: 01/15/2023] Open
Abstract
Field denitrification beds containing polymeric plant material are increasingly used to eliminate nitrate from agricultural drainage water. They mirror a number of anoxic ecosystems. However, knowledge of the microbial composition, the interaction of microbial species, and the carbon degradation processes within these denitrification systems is sparse. This study revealed several new aspects of the carbon and nitrogen cycle, and these findings can be correlated with the dynamics of the microbial community composition and the activity of key species. Members of the order Pseudomonadales seem to be important players in denitrification at low nitrate concentrations, while a switch to higher nitrate concentrations seems to select for members of the orders Rhodocyclales and Rhizobiales. We observed that high nitrate loading rates lead to an unpredictable transition of the community's activity from denitrification to dissimilatory reduction of nitrate to ammonium (DNRA). This transition is mirrored by an increase in transcripts of the nitrite reductase gene nrfAH and the increase correlates with the activity of members of the order Ignavibacteriales. Denitrification reactors sustained the development of an archaeal community consisting of members of the Bathyarchaeota and methanogens belonging to the Euryarchaeota. Unexpectedly, the activity of the methanogens positively correlated with the nitrate loading rates.
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Affiliation(s)
- Victoria Grießmeier
- Department of Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
| | - Andreas Bremges
- Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany
- German Center for Infection Research (DZIF), partner site Hannover-Braunschweig, Braunschweig, Germany
| | - Alice C McHardy
- Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany
| | - Johannes Gescher
- Department of Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany.
- Institute for Biological Interfaces, Karlsruhe Institute of Technology (KIT), Eggenstein-Leopoldshafen, Germany.
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28
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Förster AH, Beblawy S, Golitsch F, Gescher J. Electrode-assisted acetoin production in a metabolically engineered Escherichia coli strain. BIOTECHNOLOGY FOR BIOFUELS 2017; 10:65. [PMID: 28293295 PMCID: PMC5348906 DOI: 10.1186/s13068-017-0745-9] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2016] [Accepted: 02/28/2017] [Indexed: 05/31/2023]
Abstract
BACKGROUND This paper describes the metabolic engineering of Escherichia coli for the anaerobic fermentation of glucose to acetoin. Acetoin has well-established applications in industrial food production and was suggested to be a platform chemical for a bio-based economy. However, the biotechnological production is often hampered by the simultaneous formation of several end products in the absence of an electron acceptor. Moreover, typical production strains are often potentially pathogenic. The goal of this study was to overcome these limitations by establishing an electrode-assisted fermentation process in E. coli. Here, the surplus of electrons released in the production process is transferred to an electrode as anoxic and non-depletable electron acceptor. RESULTS In a first step, the central metabolism was steered towards the production of pyruvate from glucose by deletion of genes encoding for enzymes of central reactions of the anaerobic carbon metabolism (ΔfrdA-D ΔadhE ΔldhA Δpta-ack). Thereafter, the genes for the acetolactate synthase (alsS) and the acetolactate decarboxylase (alsD) were expressed in this strain from a plasmid. Addition of nitrate as electron acceptor led to an anaerobic acetoin production with a yield of up to 0.9 mol acetoin per mol of glucose consumed (90% of the theoretical maximum). In a second step, the electron acceptor nitrate was replaced by a carbon electrode. This interaction necessitated the further expression of c-type cytochromes from Shewanella oneidensis and the addition of the soluble redox shuttle methylene blue. The interaction with the non-depletable electron acceptor led to an acetoin formation with a yield of 79% of the theoretical maximum (0.79 mol acetoin per mol glucose). CONCLUSION Electrode-assisted fermentations are a new strategy to produce substances of biotechnological value that are more oxidized than the substrates. Here, we show for the first time a process in which the commonly used chassis strain E. coli was tailored for an electrode-assisted fermentation approach branching off from the central metabolite pyruvate. At this early stage, we see promising results regarding carbon and electron recovery and will use further strain development to increase the anaerobic metabolic turnover rate.
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Affiliation(s)
- Andreas H. Förster
- Department of Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Sebastian Beblawy
- Department of Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Frederik Golitsch
- Department of Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Johannes Gescher
- Department of Applied Biology, Institute for Applied Biosciences, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
- Department of Microbiology of Natural and Technical Interfaces, Institute of Functional Interfaces, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
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Bursac T, Gralnick JA, Gescher J. Acetoin production via unbalanced fermentation in Shewanella oneidensis. Biotechnol Bioeng 2017; 114:1283-1289. [DOI: 10.1002/bit.26243] [Citation(s) in RCA: 51] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2016] [Revised: 12/27/2016] [Accepted: 01/03/2017] [Indexed: 12/17/2022]
Affiliation(s)
- Thea Bursac
- Department of Applied Biology; Institute for Applied Biosciences; Karlsruhe Institute of Technology; Karlsruhe Germany
| | - Jeffrey A. Gralnick
- BioTechnology Institute and Department of Microbiology; University of Minnesota; Twin Cities St. Paul, Minnesota
| | - Johannes Gescher
- Department of Applied Biology; Institute for Applied Biosciences; Karlsruhe Institute of Technology; Karlsruhe Germany
- Department of Microbiology of Natural and Technical Interfaces; Institute of Functional Interfaces; Karlsruhe Institute of Technology; Eggenstein-Leopoldshafen Germany
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Engineering of Microbial Electrodes. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2017; 167:135-180. [PMID: 28864879 DOI: 10.1007/10_2017_16] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
This chapter provides an overview of the current state-of-the-art in the engineering of microbial electrodes for application in microbial electrosynthesis. First, important functional aspects and requirements of basic materials for microbial electrodes are introduced, including the meaningful benchmarking of electrode performance, a comparison of electrode materials, and methods to improve microbe-electrode interaction. Suitable current collectors and composite materials that combine different functionalities are also discussed. Subsequently, the chapter focuses on the design of macroscopic electrode structures. Aspects such as mass transfer and electrode topology are touched upon, and a comparison of the performance of microbial electrodes relevant for practical application is provided. The chapter closes with an overall conclusion and outlook, highlighting the future prospects and challenges for the engineering of microbial electrodes toward practical application in the field of microbial electrosynthesis. Graphical Abstract.
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31
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Vicari F, D'Angelo A, Galia A, Quatrini P, Scialdone O. A single-chamber membraneless microbial fuel cell exposed to air using Shewanella putrefaciens. J Electroanal Chem (Lausanne) 2016. [DOI: 10.1016/j.jelechem.2016.11.010] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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32
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Cheng S, Liu W, Sun D, Huang H. Enhanced power production of microbial fuel cells by reducing the oxygen and nitrogen functional groups of carbon cloth anode. SURF INTERFACE ANAL 2016. [DOI: 10.1002/sia.6173] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Shaoan Cheng
- State Key Laboratory of Clean Energy, Department of Energy Engineering; Zhejiang University; Hangzhou 310027 China
| | - Weifeng Liu
- State Key Laboratory of Clean Energy, Department of Energy Engineering; Zhejiang University; Hangzhou 310027 China
| | - Dan Sun
- State Key Laboratory of Clean Energy, Department of Energy Engineering; Zhejiang University; Hangzhou 310027 China
| | - Haobin Huang
- State Key Laboratory of Clean Energy, Department of Energy Engineering; Zhejiang University; Hangzhou 310027 China
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Sturm-Richter K, Golitsch F, Sturm G, Kipf E, Dittrich A, Beblawy S, Kerzenmacher S, Gescher J. Unbalanced fermentation of glycerol in Escherichia coli via heterologous production of an electron transport chain and electrode interaction in microbial electrochemical cells. BIORESOURCE TECHNOLOGY 2015; 186:89-96. [PMID: 25812811 DOI: 10.1016/j.biortech.2015.02.116] [Citation(s) in RCA: 65] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2015] [Revised: 02/27/2015] [Accepted: 02/28/2015] [Indexed: 05/28/2023]
Abstract
Microbial electrochemical cells are an emerging technology for achieving unbalanced fermentations. However, organisms that can serve as potential biocatalysts for this application are limited by their narrow substrate spectrum. This study describes the reprogramming of Escherichia coli for the efficient use of anodes as electron acceptors. Electron transfer into the periplasm was accelerated by 183% via heterologous expression of the c-type cytochromes CymA, MtrA and STC from Shewanella oneidensis. STC was identified as a target for heterologous expression via a two-stage screening approach. First, mass spectroscopic analysis revealed natively expressed cytochromes in S. oneidensis. Thereafter, the corresponding genes were cloned and expressed in E. coli to quantify periplasmic electron transfer activity using methylene blue. This redox dye was further used to expand electron transfer to carbon electrode surfaces. The results demonstrate that E. coli can be reprogrammed from glycerol fermentation to respiration upon production of the new electron transport chain.
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Affiliation(s)
- Katrin Sturm-Richter
- Institute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Frederik Golitsch
- Institute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Gunnar Sturm
- Institute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Elena Kipf
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, D-79110 Freiburg, Germany
| | - André Dittrich
- Institute of Photogrammetry and Remote Sensing, Englerstraße 7, D-76131 Karlsruhe, Germany
| | - Sebastian Beblawy
- Institute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Sven Kerzenmacher
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, D-79110 Freiburg, Germany
| | - Johannes Gescher
- Institute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany.
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Krieg T, Sydow A, Schröder U, Schrader J, Holtmann D. Reactor concepts for bioelectrochemical syntheses and energy conversion. Trends Biotechnol 2014; 32:645-55. [DOI: 10.1016/j.tibtech.2014.10.004] [Citation(s) in RCA: 110] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2014] [Revised: 09/23/2014] [Accepted: 10/02/2014] [Indexed: 01/24/2023]
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Electroactive bacteria—molecular mechanisms and genetic tools. Appl Microbiol Biotechnol 2014; 98:8481-95. [DOI: 10.1007/s00253-014-6005-z] [Citation(s) in RCA: 153] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2014] [Revised: 07/28/2014] [Accepted: 07/30/2014] [Indexed: 12/15/2022]
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Kipf E, Zengerle R, Gescher J, Kerzenmacher S. How Does the Choice of Anode Material Influence Electrical Performance? A Comparison of Two Microbial Fuel Cell Model Organisms. ChemElectroChem 2014. [DOI: 10.1002/celc.201402036] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Richter K, Gescher J. Accelerated glycerol fermentation in Escherichia coli using methanogenic formate consumption. BIORESOURCE TECHNOLOGY 2014; 162:389-391. [PMID: 24785787 DOI: 10.1016/j.biortech.2014.04.011] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2014] [Revised: 04/03/2014] [Accepted: 04/04/2014] [Indexed: 06/03/2023]
Abstract
Escherichia coli can ferment glycerol anaerobically only under very defined restrictive conditions. Hence, it was the aim of this study to overcome this limitation via a co-cultivation approach. Anaerobic glycerol fermentation by a pure E. coli culture was compared to a co-culture that also contained the formate-oxidizing methanogen Methanobacterium formicicum. Co-cultivation of the two strains led to a more than 11-fold increased glycerol consumption. Furthermore, it supported a constantly neutral pH and a shift from ethanol to succinate production. Moreover, M. formicicum was analyzed for its ability to grow on different standard media and a surprising versatility could be demonstrated.
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Affiliation(s)
- Katrin Richter
- Institut für angewandte Biowissenschaften, Angewandte Biologie, Karlsruher Institut für Technologie, Fritz-Haber-Weg 2, D-76131 Karlsruhe, Germany
| | - Johannes Gescher
- Institut für angewandte Biowissenschaften, Angewandte Biologie, Karlsruher Institut für Technologie, Fritz-Haber-Weg 2, D-76131 Karlsruhe, Germany.
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Dolch K, Danzer J, Kabbeck T, Bierer B, Erben J, Förster AH, Maisch J, Nick P, Kerzenmacher S, Gescher J. Characterization of microbial current production as a function of microbe-electrode-interaction. BIORESOURCE TECHNOLOGY 2014; 157:284-92. [PMID: 24566287 DOI: 10.1016/j.biortech.2014.01.112] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2013] [Revised: 01/24/2014] [Accepted: 01/27/2014] [Indexed: 05/15/2023]
Abstract
Microbe-electrode-interactions are keys for microbial fuel cell technology. Nevertheless, standard measurement routines to analyze the interplay of microbial physiology and material characteristics have not been introduced yet. In this study, graphite anodes with varying surface properties were evaluated using pure cultures of Shewanella oneidensis and Geobacter sulfurreducens, as well as defined and undefined mixed cultures. The evaluation routine consisted of a galvanostatic period, a current sweep and an evaluation of population density. The results show that surface area correlates only to a certain extent with population density and anode performance. Furthermore, the study highlights a strain-specific microbe-electrode-interaction, which is affected by the introduction of another microorganism. Moreover, evidence is provided for the possibility of translating results from pure culture to undefined mixed species experiments. This is the first study on microbe-electrode-interaction that systematically integrates and compares electrochemical and biological data.
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Affiliation(s)
- Kerstin Dolch
- Institute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany.
| | - Joana Danzer
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
| | - Tobias Kabbeck
- Institute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany.
| | - Benedikt Bierer
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
| | - Johannes Erben
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
| | - Andreas H Förster
- Institute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany.
| | - Jan Maisch
- Botanical Institute, Molecular Cell Biology, Karlsruhe Institute of Technology, Kaiserstrasse 2, 76131 Karlsruhe, Germany.
| | - Peter Nick
- Botanical Institute, Molecular Cell Biology, Karlsruhe Institute of Technology, Kaiserstrasse 2, 76131 Karlsruhe, Germany.
| | - Sven Kerzenmacher
- Laboratory for MEMS Applications, IMTEK - Department of Microsystems Engineering, University of Freiburg, Georges-Koehler-Allee 103, 79110 Freiburg, Germany.
| | - Johannes Gescher
- Institute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology, Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany.
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