Active and total microbial community dynamics and the role of functional genes bamA and mcrA during anaerobic digestion of phenol and p-cresol

Enhanced anaerobic biodegradation of typical phenolic compounds in coal gasification wastewater (CGW) using biochar: Focusing on the hydrolysis-acidification process and microbial community succession

The aim of this research is to investigate the effects of biochar (BC) on treatment performance (especially hydrolysis-acidification process) and microbial community shifts during anaerobic degradation of typical phenolic compounds in coal gasification wastewater. Compared to the control group, the removal of phenol, p-cresol and 3, 5-xylenol was gradually enhanced when increasing the BC addition within the test dosage (1-5 g/L). The biodegradation of phenol and p-cresol was significantly enhanced by BC addition while limited improvement for 3, 5-xylenol. The addition of BC significantly accelerated the hydrolysis-acidification process with the hydrolytic removal of phenol improved by 69.14%, the microbial activity was enhanced by 57.01%, and the key hydrolase bamA gene was enriched by 117.27%, respectively. Compared to 1-2 g/L dose, more protein-like and humic acid-like substances were secreted with 5 g/L BC, which probably contributed to higher extracellular electron transfer efficiency. In addition, phenol degrading bacteria (Syntrophorhabdus, Dysgonomonas, Holophaga, etc.) and electroactive microorganisms (Geobacter, Syntrophorhabdus, Methanospirillum, etc.) were enriched by BC addition. The functional genes related to carboxylation, benzoylation and ring cleavage processes of benzoyl-CoA pathway were potentially activated by BC.

Bioelectrochemical anaerobic membrane bioreactor enables high methane production from methanolic wastewater: Roles of microbial ecology and microstructural integrity of anaerobic biomass

The disintegration of anaerobic sludge and blockage of membrane pores has impeded the practical application of anaerobic membrane bioreactor (AnMBR) in treating methanolic wastewater. In this study, bioelectrochemical system (BES) was integrated into AnMBR to alleviate sludge dispersion and membrane fouling as well as enhance bioconversion of methanol. Bioelectrochemical regulation effect induced by BES enhanced methane production rate from 4.94 ± 0.52 to 5.39 ± 0.37 L/Lreactor/d by accelerating the enrichment of electroactive microorganisms and the agglomeration of anaerobic sludge via the adhesive and chemical bonding force. 16 S rRNA gene high-throughput sequencing demonstrated that bioelectrochemical stimulation had modified the metabolic pathways by regulating the key functional microbial communities. Methanogenesis via the common methylotrophic Methanomethylovorans was partially substituted by the hydrogenotrophic Candidatus_Methanofastidiosum, etc. The metabolic behaviors of methanol are bioelectrochemistry-dependent, and controlling external voltage is thus an effective strategy for ensuring robust electron transfer, low membrane fouling, and long-term process stability.

Integrative biohydrogen- and biomethane-producing bioprocesses for comprehensive production of biohythane

The production of biohythane, a combination of energy-dense hydrogen and methane, from the anaerobic digestion of low-cost organic wastes has attracted attention as a potential candidate for the transition to a sustainable circular economy. Substantial research has been initiated to upscale the process engineering to establish a hythane-based economy by addressing major challenges associated with the process and product upgrading. This review provides an overview of the feasibility of biohythane production in various anaerobic digestion systems (single-stage, dual-stage) and possible technologies to upgrade biohythane to hydrogen-enriched renewable natural gas. The main goal of this review is to promote research in biohythane production technology by outlining critical needs, including meta-omics and metabolic engineering approaches for the advancements in biohythane production technology.

Size-dependent effects of polystyrene microplastics on anaerobic digestion performance of food waste: Focusing on oxidative stress, microbial community, key metabolic functions

Polystyrene (PS) microplastics (MPs) are widely existed in food waste (FW) due to the usage of plastic food-packaging. However, the effects and mechanisms of PS MPs with different sizes on anaerobic digestion (AD) performance of FW have not been comprehensively studied yet. Herein, the impacts of different PS MPs sizes (1 mm, 100 µm and 1 µm) with 20, 200 particles/g-TS were investigated. Results showed that 20 particles/g-TS PS MPs decreased cumulative methane production by 1.46-18.11 %, while the higher levels (200 particles/g-TS) significantly inhibited by 9.14-33.08 % (p < 0.05) compared with control group. The inhibiting effects were enhanced as particle size smaller. Physicochemical analysis indicated that MPs prolonged organic matter hydrolysis, weakened the volatile fatty acids metabolism and inhibited methanogenesis-related microorganisms (Synergistetes, Proteiniphilum and Methanosarcina). Small-sized MPs could induce more reactive oxygen species causing cell toxicity and suppressed key enzymes (α-glucoside, protease, acetate kinases and F₄₂₀) activities, thereby restraining methane production. The analyses of acetyl-CoA synthase and methyl-coenzyme M reductase functional genes illustrated that small-sized MPs negatively affected acetoclastic methanogenesis pathways. Overall, these results provide new insights into the size-dependent effects on AD performance induced by PS MPs.

Anaerobic phenanthrene biodegradation by a new salt-tolerant/halophilic and nitrate-reducing Virgibacillus halodenitrificans strain PheN4 and metabolic processes exploration

The biodegradation of polycyclic aromatic hydrocarbons (PAHs) under hypersaline environments has received increasing attention, whereas the study of anaerobic PAH biodegradation under hypersaline environments is still lacking. Here, we found a pure culture designated PheN4, which was affiliated with Virgibacillus halodenitrificans and could degrade phenanthrene with nitrate as the terminal electron acceptor and a wide range of salinities (from 0.3% to 20%) under anaerobic environments. The optimal salinity for biodegradation of phenanthrene by PheN4 was 5%, which could degrade 93.5% of 0.62 ± 0.04 mM phenanthrene within 10 days with the initial inoculum of 0.01 gVSS/L. Meanwhile, an increased microbial amount could efficiently promote the phenanthrene biodegradation rate. The metabolic processes of anaerobic phenanthrene biodegradation under hypersaline conditions by PheN4 were proposed based on intermediates and genome analyses. Phenanthrene was initially activated via methylation to form 2-methylphenanthrene. Next, fumarate addition and β-oxidation or direct oxidation of the methyl group, ring reduction and ring cleavage were identified as the midstream and downstream steps. In addition, PheN4 could utilize benzene, naphthalene, and anthracene as carbon sources, but Benz[a]anthracene, pyrene, and Benzo[a]pyrene could not be biodegraded by PheN4. This study could provide some guidance for the bioremediation of PAH pollutants in anaerobic and hypersaline zones.

Methanogen and nitrifying genes dynamics in immersed membrane bioreactors during anaerobic co-digestion of different organic loading rates food waste

This work was aimed to evaluate the distinctive food waste (FW) organic loading rates (OLR) on methanogen and nitrifying genes dynamics and its correlation with identified relative abundance of bacterial dynamics during the anaerobic digestion. This experiment were carried out in the digesters at high OLR of food wastes at (4 to 8 g volatile solids/liter/day reactor R1) and (6 to 10 g volatile solids/liter/day reactor R2). The results shown that the relative abundance of mcrA, mcrB and mcrG genes were richest in the first day of both R1 and R2. In addition, the most of nitrifying genes were greater in after 34 days digestion in R2, while these genes did not show the specific regularity in R1. Finally, the correlation figure shows that Clostridium and Lactobacillus genera were significantly correlated with the different organic acids and methanogen and nitrifying genes dynamics.

Influences of humic-rich natural materials on efficiencies of UASB reactor: A comparative study

Two humic-rich natural materials namely peat soil and lignite were supplemented in up-flow anaerobic sludge blanket (UASB) bioreactors for the treatment of phenolic wastewater. Peat soil improved phenol degradation and resistance to shock load; ultimately, contributing to higher COD removal efficiency (83.3%), methane production (4532 mL d^-1), and better reactor's stability. Accordingly, the amount of extracellular polymeric substances (EPS) and coenzyme F₄₂₀ in sludge were increased to 1.3-fold and 2.5-fold, respectively, as compared to the control treatment. The addition of lignite however displayed poor phenol degradation and no effects on the secretion of EPS and F₄₂₀. The peat soil significantly influenced the microbial community structures, whereas the effect of lignite was inconspicuous. In the presence of peat soil, the abundance of syntrophic fermentation bacteria and methanogens was significantly increased. This study illustrates the potential use of peat soil in UASB for the treatment of phenolic wastewaters.

Alteration and the Function of Intestinal Microbiota in High-Fat-Diet- or Genetics-Induced Lipid Accumulation

Diet and host genetics influence the composition of intestinal microbiota, yet few studies have compared the function of intestinal microbiota in the diet- or genotype-induced lipid deposition, which limits our understanding of the role of intestinal bacteria in metabolic disorders. The lipid accumulation in wild-type zebrafish fed with control (CON) or high-fat (HF) diet and two gene-knockout zebrafish lines (cpt1b^–/– or pparab^–/–) fed with control diet was measured after a 4-week feeding experiment. The intestinal microbiota composition of these groups was investigated using 16S ribosomal RNA (rRNA) gene sequencing (DNA-based) and 16S rRNA sequencing (RNA-based). The HF diet or deficiency of two genes induced more weight gain and higher triglyceride content in the liver compared with their control group. 16S rRNA gene sequencing (DNA-based) indicated the decreased abundance of Proteobacteria in the HF group compared with CON, but there was no significant difference in bacterial α diversity among treatments. 16S rRNA sequencing (RNA-based) confirmed the decreased abundance of Proteobacteria and the bacterial α diversity in the HF group compared with CON. Deficiency of cpt1b or pparab showed less change in microbiota composition compared with their wild-type group. Intestinal microbiota of each group was transferred to germ-free zebrafish, and the quantification of Nile red staining indicated that the intestinal microbiota of the HF group induced more lipid accumulation compared with CON, whereas intestinal microbiota of cpt1b^–/– and pparab^–/– zebrafish did not. The results showed that RNA-based bacterial sequencing revealed more bacterial alteration than DNA-based bacterial sequencing. HF diet had a more dominant role in shaping gut microbiota composition to induce lipid accumulation compared with the gene-knockout of cpt1b or pparab in zebrafish, and the transplant of intestinal microbiota from HF-fed fish induced more lipid deposition in germ-free zebrafish. Together, these data suggested that a high-fat diet exerted a more dominant role over the deletion of cpt1b or pparab on the intestinal bacterial composition, which corresponded to lipid accumulation.

Microbial analysis and enrichment of anaerobic phenol and p-cresol degrading consortia with addition of AQDS

Quinones and humus are ubiquitous in the biosphere and play an important role in the anaerobic biodegradation and biotransformation of organic acids, poisonous compounds as well as inorganic compounds. The impact of humic model compound, anthraquinone-2, 6-disulfonate (AQDS) on anaerobic phenol and p-cresol degradation were studied. Four methanogenic AQDS-free phenol and p-cresol enrichments and two phenol-AQDS enrichments were obtained using two sludges with potential biodegradability of phenol and cresol isomers as inoculum. 16S rRNA gene-cloning analysis combined with fluorescence in situ hybridization revealed that syntrophic aromatic compound degrading bacterium Syntrophorhabdus aromaticivorans was dominant in four AQDS-free enrichments, whereas phenol degrading Cryptanaerobacter phenolicus was dominant in two phenol-AQDS enrichments. Neither co-culture of S. aromaticivorans with Methanospirillum hungatei nor two phenol-AQDS enrichments could metabolize phenol using AQDS as the terminal electron acceptor. Further degradation experiments suggested that C. phenolicus related microbes in two phenol-AQDS enrichments were responsible for the conversion of phenol to benzoate, and benzoate was further degraded by benzoate degraders of Syntrophus aciditrophicus or Sporotomaculum syntrophicum to acetate.

Limitation of voltage reversal in the degradation of azo dye by a stacked double-anode microbial fuel cell and characterization of the microbial community structure

In this study, two double-anode microbial fuel cells (MFCs) were connected in series for degradation of the azo dye reactive brilliant red X-3B. After the series connection, the electricity generation of one of the MFCs decreased, and the other was not affected too much. Due to the special structure in the double-anode MFC reduced the imbalanced performance between the MFC units, the occurrence of voltage reversal was limited. The removal efficiencies in two MFC reactors were not consistent after the series connection, the results showed that the MFC with the reduced electricity generation had the higher removal efficiencies, it was 12.90, 11.66, and 40.05% higher than in the MFC in which the power generation capacity was not affected after the series connection, the MFC without serial connection, and the control group, respectively. Meanwhile, the microbial communities related to the degradation of refractory organic compounds increased and related to electricity generation decreased in the MFC with the reduced electricity generation, the changes of the microbial communities were consistent with its electricity generation and the removal efficiencies. The degradation products in the effluent from two MFC units showed that had the products generated from the MFC with the reduced electricity generation had simpler structures comparing the other MFC unit.

Soil Bacterial Community Structure in Turfy Swamp and Its Response to Highway Disturbance

In recent years, the construction and development of highways in turfy swamp areas has been very common. When highways pass through turfy swamps, they can change the local soil, vegetation and hydrological environment, but the impact on soil microorganisms is unclear. We studied the impact of highways on soil microbial communities and diversity in three turfy swamps. Soil samples were collected in the affected area (distance from the expressway 10 m) and control area (distance from the expressway 500–1000 m), and the soil properties, heavy metal content and microbial composition were measured. Subsequent statistical analysis showed that soil organic carbon (SOC), total nitrogen (TN), Cd, Cr, Zn, Cu, density and especially water table (WT) are the main driving forces affecting the composition of microorganisms. The WT and density can also be used to predict the change trend of the ratio of proteobacteria to acid bacteria, reflecting the soil nutrient status. In general, the composition of soil microorganisms in turfy swamp is mainly affected by road drainage and heavy metal emissions. This research provides new insights into the impact of highways on turfy swamps from the perspective of bacterial diversity and community composition, and it also provides a basis for the restoration of the wetland ecological environment.

Redox-based electron exchange capacity of biowaste-derived biochar accelerates syntrophic phenol oxidation for methanogenesis via direct interspecies electron transfer

In this study, six different types of biochar (based on two feedstocks and three pyrolytic temperatures) were prepared as individual additives for both syntrophic phenol degradation and methanogenesis promotion. The results showed that for phenol degradation, the addition of biochar (15 g/L) shortened the methanogenic lag time from 15.0 days to 1.1-3.2 days and accelerated the maximum CH₄ production rate from 4.0 mL/d to 10.4-13.9 mL/d. Microbial community analysis revealed that the electro-active Geobacter was enriched (from 3.8-7.7% to 11.1-23.1%), depending on the type of biochar that was added. This indicates a potential shift of syntrophic phenol metabolism from a thermodynamically unfavorable pathway with H₂ as the interspecies electron transfer mediator to direct interspecies electron transfer (DIET). Integrated analysis of methanogenesis dynamics and the electrochemical properties of biochar showed that compared with electrical conductivity, the electron exchange capacity of biochar was more likely to dominate the DIET process, which was due to the presence of redox-active organic functional groups in biochar. The removal of biochar from the anaerobic system generally prolonged the lag time, revealing the importance of adsorption capacity of biochar to mitigate bio-toxicity of phenol to microbial activity.

Correlations between microbial population dynamics, bamA gene abundance and performance of anaerobic sequencing batch reactor (ASBR) treating increasing concentrations of phenol

The relevant microorganims driving efficiency changes in anaerobic digestion of phenol remains uncertain. In this study correlations were established between microbial population and the process performance in an anaerobic sequencing batch reactor (ASBR) treating increasing concentrations of phenol (from 120 to 1200 mg L^-1). Sludge samples were taken at different operational stages and microbial community dynamics was analyzed by 16S rRNA sequencing. In addition, bamA gene was quantified in order to evaluate the dynamics of anaerobic aromatic degraders. The microbial community was dominated by Anaerolineae, Bacteroidia, Clostridia, and Methanobacteria classes. Correlation analysis between bamA gene copy number and phenol concentration were highly significant, suggesting that the increase of aromatic degraders targeted by bamA assay was due to an increase in the amount of phenol degraded over time. The incremental phenol concentration affected hydrogenotrophic archaea triggering a linear decrease of Methanobacterium and the growth of Methanobrevibacter. The best performance in the reactor was at 800 mg L^-1 of phenol. At this stage, the highest relative abundances of Syntrophorhabdus, Chloroflexus, Smithella, Methanolinea and Methanosaeta were observed and correlated positively with initial degradation rate, suggesting that these microorganisms are relevant players to maintain a good performance in the ASBR.

Assessing the stability of anaerobic co-digestion in the context of a WWTP with thermal pre-treatment of sewage sludge. Case study in Chile

In this study, beverage wastewater (BW) and extended aeration sewage sludge were assessed as co-substrates with both mixed sludge and thermally hydrolyzed sludge as substrates in an anaerobic codigestion (AcoD) process. The methodology is an integrated methodology that comprises a batch test (BMP) and semicontinuous reactor along with microbial diversity analysis. The results showed that in batch conditions, neither significant synergistic nor antagonistic effects were observed on the maximum potential (P) due to the cosubstrates presence. However, synergistic effects on a kinetic parameter (R_m) were observed when BW was used as cosubstrate. Process instability was observed in semi-continuous mode with cosubstrate BW, which was not predicted by the BMP test. As demonstrated in this study, the BMP approach is also not suitable for predicting continuous performance in real systems; however, it can be used to screen an array of substrates. In semi-continuous mode, one can expect to reach values between 50 and 60% of the biogas potential and 20-40% of the maximum production rate achieved in batch tests. The agreement between batch and semi-continuous results is also dependent on the type of inoculum used. The microbial diversity of the system was more influenced by the reactor stability than the presence of cosubstrates. To predict the performance (and stability) of real anaerobic digesters, dynamic models should be employed.

DNA- and RNA- Derived Fungal Communities in Subsurface Aquifers Only Partly Overlap but React Similarly to Environmental Factors

Recent advances in high-throughput sequencing (HTS) technologies have revolutionized our understanding of microbial diversity and composition in relation to their environment. HTS-based characterization of metabolically active (RNA-derived) and total (DNA-derived) fungal communities in different terrestrial habitats has revealed profound differences in both richness and community compositions. However, such DNA- and RNA-based HTS comparisons are widely missing for fungal communities of groundwater aquifers in the terrestrial biogeosphere. Therefore, in this study, we extracted DNA and RNA from groundwater samples of two pristine aquifers in the Hainich CZE and employed paired-end Illumina sequencing of the fungal nuclear ribosomal internal transcribed spacer 2 (ITS2) region to comprehensively test difference/similarities in the “total” and “active” fungal communities. We found no significant differences in the species richness between the DNA- and RNA-derived fungal communities, but the relative abundances of various fungal operational taxonomic units (OTUs) appeared to differ. We also found the same set of environmental parameters to shape the “total” and “active” fungal communities in the targeted aquifers. Furthermore, our comparison also underlined that about 30%–40% of the fungal OTUs were only detected in RNA-derived communities. This implies that the active fungal communities analyzed by HTS methods in the subsurface aquifers are actually not a subset of supposedly total fungal communities. In general, our study highlights the importance of differentiating the potential (DNA-derived) and expressed (RNA-derived) members of the fungal communities in aquatic ecosystems.

GC-MS Characterization of Volatile Flavor Compounds in Stinky Tofu Brine by Optimization of Headspace Solid-Phase Microextraction Conditions

This study optimized the headspace solid phase microextraction (HS-SPME) conditions for the analysis of the volatile flavor compounds of Chinese south stinky tofu brine by gas chromatography-mass spectrometry (GC-MS). The optimum HS-SPME conditions established were as follows: polar column CD-WAX, white 85 μm polyella extractor, extraction temperature 60 °C, equilibrium time 20 min, extraction time 40 min. Under these conditions, a total of 63 volatile flavor compounds in five stinky tofu brines were identified. The offensive odor of the stinky tofu may be derived from some of the volatile flavor compounds such as phenol, p-cresol, 3-methylindole, indole, acetic acid, propionic acid, isobutyric acid, n-butyric acid and 3-methylbutanoic acid. The volatile flavor substances data was examined by principal component analysis (PCA) to visualize the response patterns in the feature space of principal components (PC). PCA analysis results revealed that the Chengshifu brine (STB1) and Baise jingdian brine (STB4) are similar in PC 1, 2, and 3, and the two brines have a similar flavor. Results also indicate that the Huogongdian brine (STB2) and Wangcheng brine (STB3) can be grouped in the same class as they are similar in PC 3. However, PC 1, 2, and 3 of the Luojia brine (STB5) and other brands of brine are different as is the flavor.