Functional and compositional characteristics of nitrifiers reveal the failure of achieving mainstream nitritation under limited oxygen or ammonia conditions

Sealing solid agar in serum bottles for rapid isolation and long-term preservation of chemoautotrophic ammonia-oxidizing bacteria

Ammonia-oxidizing bacteria (AOB) are ubiquitous on the earth and have broad applications in bioremediation. However, the number of their species with standing in nomenclature and deposited in Microbial Culture Collections still remains low. Moreover, only a few novel species have been reported over the last decades. In this study, we sealed agar in serum bottles to develop a kind of solid agar plate with the oxygen concentration in the headspace maintained at low levels. By using these plates, eight AOB isolates including two novel species were obtained. When AOB cells were grown on the sealed solid agar plates, the time to form visible colonies was largely reduced and the maximum diameter of colonies reached 2 mm, which makes the process of AOB isolation rapid and efficient. Based on five AOB isolates, the headspace oxygen concentration had a significant influence on AOB growth either on solid plate or in liquid culture. Especially, when grown under 21 % O2, the number of colonies formed on solid agar plates was very low and sometimes no visible colony formed. Besides the application on AOB isolation, the sealed solid agar plate was also effective for the enumeration and preservation of AOB cells. When preserved under room temperature for more than ten months, the AOB colonies on the plate could still be recovered. This method provides a feasible way to isolate more novel AOB species from the environment and deposit more species in Microbial Culture Collections.

The enrichment characterisation of Nitrospira under high DO conditions

Nitrite-oxidizing bacteria (NOB) are crucial to nitrification and nitrogen elimination in wastewater treatment. Mass reports exist on the links between NOB and other microorganisms, for instance, ammonia-oxidizing bacteria (AOB). However, a few studies exist on the enrichment characterisation of NOB under high dissolved oxygen (DO) conditions. In this study, NOB was designed to be enriched individually under high DO conditions in a continuous aeration sequencing batch reactor (SBR), and the kinetic characterisation of NOB was evaluated. The analysis revealed that the average NO2--N removal rate was steady above 98%, with DO and NO2--N being 3-5 mg L-1 and 50-450 mg L-1, respectively. The NO2--N removal efficiency of the system was significantly enhanced and better than in other studies. The high-throughput sequencing suggested that Parcubacteria_ genera_incertae_sedis was the first dominant genus (21.99%), which often appeared in the NOB biological community with Nitrospira. However, the dominant genus NOB was Nitrospira rather than Nitrobacter (8.49%). This result suggested that Nitrospira was capable of higher NO2--N removal. But lower relative abundance indicated that excessive NO2--N had an adverse effect on the enrichment and activity of Nitrospira. In addition, the nitrite half-saturation constant (KNO2) and the oxygen half-saturation constant (KO) were 1.71 ± 0.19 mg L-1 and 0.95 ± 0.10 mg L-1, respectively. These results showed that the enriched Nitrospira bacteria had different characteristics at the strain level, which can be used as a theoretical basis for wastewater treatment plant design and optimisation.

Recurrent multi-stressor floc treatments with sulphide and free ammonia enabled mainstream partial nitritation/anammox

Selective suppression of nitrite-oxidising bacteria (NOB) over aerobic and anoxic ammonium-oxidising bacteria (AerAOB and AnAOB) remains a major challenge for mainstream partial nitritation/anammox implementation, a resource-efficient nitrogen removal pathway. A unique multi-stressor floc treatment was therefore designed and validated for the first time under lab-scale conditions while staying true to full-scale design principles. Two hybrid (suspended + biofilm growth) reactors were operated continuously at 20.2 ± 0.6 °C. Recurrent multi-stressor floc treatments were applied, consisting of a sulphide-spiked deoxygenated starvation followed by a free ammonia shock. A good microbial activity balance with high AnAOB (71 ± 21 mg N L-1 d-1) and low NOB (4 ± 17 % of AerAOB) activity was achieved by combining multiple operational strategies: recurrent multi-stressor floc treatments, hybrid sludge (flocs & biofilm), short floc age control, intermittent aeration, and residual ammonium control. The multi-stressor treatment was shown to be the most important control tool and should be continuously applied to maintain this balance. Excessive NOB growth on the biofilm was avoided despite only treating the flocs to safeguard the AnAOB activity on the biofilm. Additionally, no signs of NOB adaptation were observed over 142 days. Elevated effluent ammonium concentrations (25 ± 6 mg N L-1) limited the TN removal efficiency to 39 ± 9 %, complicating a future full-scale implementation. Operating at higher sludge concentrations or reducing the volumetric loading rate could overcome this issue. The obtained results ease the implementation of mainstream PN/A by providing and additional control tool to steer the microbial activity with the multi-stressor treatment, thus advancing the concept of energy neutrality in sewage treatment plants.

Dynamic simulation analysis of city tail water treatment by constructed wetland with biochar substrate

Constructed wetland (CW) is an important method of ecological water treatment, and CW has obvious advantage in treating low-pollution water. In order to improve the treatment efficiency of CW, the first-order and second-order kinetics simulations of pollutant removal in CW were carried out to optimize operating conditions. The experimental study of city tail water treatment under unmodified biochar (different additions) or different modified biochar conditions showed that the first-order kinetic equation relatively accurately reflect the removal of pollutants by substrate. The relatively optimal range of biochar addition (2.21-3.79%) in the first-order kinetic analysis covered the relatively optimal mass ratio (2.95%). The first-order kinetic equation fitting showed that the half-life of ammonia nitrogen removal by NaOH (0.1 mol·L-1)-modified biochar was reduced by about 10% without plant. The half-life of total phosphorus removal by KMnO4 (0.1 mol·L-1) modified biochar was reduced by about 50%. The half-life of chemical oxygen demand removal by H2SO4 (0.75 mol·L-1) + 8 freeze-thaw cycles modified biochar was reduced by about 9.0%. When the half-life was small, the pollutant removal rate was high. The results of this study further confirmed the effectiveness of the simulation results of pollutant removal in CW with biochar by the first-order kinetic equation. This study further optimized the CW operating conditions and improved the treatment efficiency of nitrogen and phosphorus in the CW.

Elucidating prioritized factor for mainstream partial nitritation between C/N ratio and dissolved oxygen: Response surface methodology and microbial community shifts

Recently, C/N ratio is suggested as a promising control factor with dissolved oxygen (DO) achieving mainstream partial nitritation (PN); however, their combined effects on mainstream PN are still limited. This study evaluated the mainstream PN with respect to the combined factors, and investigated the prioritized factor affecting the community of aerobic functional microbes competing with NOB. Response surface methodology was performed to assess the combined effects of C/N ratio and DO on the activity of functional microbes. Aerobic heterotrophic bacteria (AHB) played the greatest role in oxygen competition among functional microbes, which resulted in relative inhibition of nitrite-oxidizing bacteria (NOB). The combination of high C/N ratio and low DO had a positive role in the relative inhibition of NOB. In bioreactor operation, the PN was successfully achieved at ≥ 1.5 of C/N ratio for 0.5-2.0 mg/L DO conditions. Interestingly, aerobic functional microbes outcompeting NOB were shifted with C/N ratio rather than DO, suggesting C/N ratio is more prioritized factor achieving mainstream PN. These findings will provide insights into how combined aerobic conditions contribute to achieve mainstream PN.

Microbial ecological responses of partial nitritation/anammox granular sludge to real water matrices and its potential application

Granular sludges are commonly microbial aggregates used to apply partial nitritation/anammox (PN/A) processes during efficient biological nitrogen removal from ammonium-rich wastewater. Considering keystone taxa of anammox bacteria (AnAOB) in granules and their sensitivity to unfavorable environments, it is essential to investigate microbial responses of autotrophic PN/A granules to real water matrices containing organic and inorganic pollutants. In this study, tap water, surface water, and biotreated wastewater effluents were fed into a series of continuous PN/A granular reactors, respectively, and the differentiation in functional activity, sludge morphology, microbial community structure, and nitrogen metabolic pathways was analyzed by integrating kinetic batch testing, size characterization, and metagenomic sequencing. The results showed that feeding of biotreated wastewater effluents causes significant decreases in nitrogen removal activity and washout of AnAOB (dominated by Candidatus Kuenenia) from autotrophic PN/A granules due to the accumulation of heavy metals and formation of cavities. Microbial co-occurrence networks and nitrogen cycle-related genes provided evidence for the high dependence of symbiotic heterotrophs (such as Proteobacteria, Chloroflexi, and Bacteroidetes) on anammox metabolism. The enhancement of Nitrosomonas nitritation in the granules would be considered as an important contributor to greenhouse gas (N₂O) emissions from real water matrices. In a novel view on the application of microbial responses, we suggest a bioassay of PN/A granules by size characterization of red-color cores in ecological risk assessment of water environments.

Performance evaluation of moving bed bioreactor for simultaneous nitrification denitrification and phosphorus removal from simulated fertilizer industry wastewater

With increasing demand for agricultural production, chemical fertilizers are now being intensively manufactured and used to provide readily available nutrients in larger quantities, which often leach out and contaminate the groundwater source. At the same time, effluents from fertilizer plants also pollute water bodies, when disposed of without proper treatment. The present study evaluates nitrogen and phosphorus removal efficiencies in a single-stage aerobic moving bed bioreactor (MBBR) from diammonium phosphate (DAP)-spiked wastewater containing no organic carbon. To date, no similar study has been undertaken that treats fertilizer plant effluent or agricultural runoff without the aid of external carbon, where organic carbon is hypothesized to be supplied from endogenous degradation of biomass. Both denitrification and phosphorus removal occurs in the anoxic zones of deeper layers of the biofilm. The present investigation demonstrates the feasibility of the processes with the requirement of a two-stage MBBR for effective simultaneous nitrification, denitrification, and phosphorus removal (SNDPr) together with a polishing technology to bring down the phosphorus concentration within limits. A novel bio-carrier designed for efficient SND was used in the study, with a carrier filling ratio of 35% that supported the formation of deep biofilms creating anoxic zones in the inner surface. Identification of the bacterial species reflects the occurrence of simultaneous nitrification, denitrification, and phosphorous removal (SNDPr) in the reactor. A maximum ammonium nitrogen removal efficiency of 98% was recorded with 95% total nitrogen removal, 69% phosphorus removal, and 85% SND efficiency, indicating the applicability of the process with a tertiary phosphorus removal unit to lower the nutrient concentration of effluents prior to disposal.

Rearrangements of the nitrifiers population in an activated sludge system under decreasing solids retention times

Due to the key role of nitrite in novel nitrogen removal systems, nitrite oxidizing bacteria (NOB) have been receiving increasing attention. In this study, the coexistence and interactions of nitrifying bacteria were explored at decreasing solids retention times (SRTs). Four 5-week washout experiments were carried out in laboratory-scale (V = 10 L) sequencing batch reactors (SBRs) with mixed liquor from two full-scale activated sludge systems (continuous flow vs SBR). During the experiments, the SRT was gradually reduced from the initial value of 4.0 d to approximately 1.0 d. The reactors were operated under limited dissolved oxygen conditions (set point of 0.6 mg O₂/L) and two process temperatures: 12 °C (winter) and 20 °C (summer). At both temperatures, the progressive SRT reduction was inefficient for the out-selection of both canonical NOB and comammox Nitrospira. However, the dominant NOB switched from Nitrospira to Ca. Nitrotoga, whereas the dominant AOB was always Nitrosomonas. The results of this study are important for optimizing NOB suppression strategies in the novel N removal processes, which are based on nitrite accumulation.

Rice husk-intensified cathode driving bioelectrochemical reactor for remediating nitrate-contaminated groundwater

To achieve economical and eco-friendly denitrification, rice husk-intensified cathode driving bioelectrochemical reactor (RCBER) was constructed with rice husk as solid-phase carbon source and microbial carrier. Results demonstrated that the application of current improved the utilization of rice husk and enhanced the denitrification, and the quenching of anodic hydroxyl radicals by rice husk also improved the microbial resistance to current. The highest nitrate removal rate as 0.34 mg-N/(L∙d), higher economic benefits, i.e., current efficiency as 31.6% and energy consumption as 2.43 kWh/g NO₃^--N, and the highest environmental benefit, i.e., hydrogenotrophic denitrification contribution as 37.9%, were obtained at 200 mA/m². The best performance at 200 mA/m² was related to its better microenvironment, such as lower accumulation of anodic by-products and higher bioavailability of rice husks, as well as higher microbial metabolic activity, such as stable extracellular polymeric substance, the maximum electron transport system activity as 11.63 ± 0.14 μg O₂·g^-1·min^-1·mg protein^-1 and the highest activity of nitrate reductase (3.15-fold that of control check). The application of current realized the coexistence of heterotrophic and hydrogenotrophic denitrifiers, and multiple functional bacteria such as anaerobic denitrifiers Flavobacterium, aerobic denitrifiers Comamonas, hydrogenotrophic denitrifiers Thermomonas and electron transfer-related Enterobacter coexisted at 200 mA/m², thereby improving RCBER's adaptability to the complex microenvironment. This study provides the theoretical basis for realizing a win-win situation of environmental pollution remediation and agricultural waste disposal.

Cometabolic biodegradation of antibiotics by ammonia oxidizing microorganisms during wastewater treatment processes

Studies on antibiotic removal during wastewater treatment processes are crucial since their release into the environment could bring potential threats to human health and ecosystem. Cometabolic biodegradation of antibiotics by ammonia oxidizing microorganisms (AOMs) has received special attentions due to the enhanced removal of antibiotics during nitrification processes. However, the interactions between antibiotics and AOMs are less well-elucidated. In this review, the recent research proceedings on cometabolic biodegradation of antibiotics by AOMs were summarized. Ammonia oxidizing bacteria (AOB), ammonia oxidizing archaea (AOA) and complete ammonia oxidizers (comammox) played significant roles in both nitrification and cometabolic biodegradation of antibiotics. Antibiotics at varying concentrations might pose inhibiting or stimulating effect on AOMs, influencing the microbial activity, community abundance and ammonia monooxygenase subunit A gene expression level. AOMs-induced cometabolic biodegradation products were analyzed as well as the corresponding pathways for each type of antibiotics. The effects of ammonium availability, initial antibiotic concentration, sludge retention time and temperature were assessed on the cometabolic biodegradation efficiencies of antibiotics. This work might provide further insights into the fate and removal of antibiotics during nitrification processes.

Oxygen control and stressor treatments for complete and long-term suppression of nitrite-oxidizing bacteria in biofilm-based partial nitritation/anammox

Mainstream nitrogen removal by partial nitritation/anammox (PN/A) can realize energy and cost savings for sewage treatment. Selective suppression of nitrite oxidizing bacteria (NOB) remains a key bottleneck for PN/A implementation. A rotating biological contactor was studied with an overhead cover and controlled air/N₂ inflow to regulate oxygen availability at 20 °C. Biofilm exposure to dissolved oxygen concentrations < 0.51 ± 0.04 mg O₂ L^-1 when submerged in the water and < 1.41 ± 0.31 mg O₂ L^-1 when emerged in the headspace (estimated), resulted in complete and long-term NOB suppression with a low relative nitrate production ratio of 10 ± 4%. Additionally, weekly biofilm stressor treatments with free ammonia (FA) (29 ± 1 mg NH₃-N L^-1 for 3 h) could improve the NOB suppression while free nitrous acid treatments had insufficient effect. This study demonstrated the potential of managing NOB suppression in biofilm-based systems by oxygen control and recurrent FA exposure, opening opportunities for resource efficient nitrogen removal.

Can nitrifiers from the sidestream deammonification process be a remedy for the N-overload of the mainstream reactor?

The combination of sidestream deammonification and bioaugmentation of the mainstream reactor using ammonia oxidizers from partial nitritation (PN) was not achieved before. This novel solution not only enables the efficient sidestream nitrogen removal, but also improves mainstream resistance to stress situations such as biomass washout or nitrogen overload. This feature is important for wastewater treatment plants (WWTPs) equipped with reject water deammonification as its implementation leads to lower nitrifier mass in the mainstream reactor and therefore diminish ability to cope with rapid increase in the loading rate (i.e. due to sidestream process failure). The proposed approach presents the use of the excess sludge from a modified PN process to boost the mainstream nitrification in unfavourable conditions. In a long-term laboratory experiment, the operation of an existing WWTP at low temperature was simulated in two reactors using real wastewater fluxes. One of them was augmented with the excess sludge from a PN reactor that treats reject water containing 20% of the WWTP N-load. The treatment efficiency in both reactors was tested under different nitrogen loading rates, as well as in the case of the of biomass loss. The bioaugmentation intensity was set according to the actual nitrogen load balance of the modelled WWTP, resulting in a daily seed volume only equal to 0.28% of the reactors' influent. Two incidents were simulated, where the nitrogen load increased by about 24.5% and 34%. In both cases, the nitrification efficiency in the non-augmented reactor dropped by about 45%, while the augmented reactor maintained efficient ammonium removal. The bioaugmentation effect was also noticeable during biomass washout - only in the non-augmented reactor nitrification was insufficient for over 60 days. These results undoubtedly show the possibility of combining two different approaches for sidestream nitrogen removal into one technology demonstrating the advantages of both component solutions.

Insight into how high dissolved oxygen favors the startup of nitritation with aerobic granules

To elucidate how high dissolved oxygen (DO) favors the startup of nitritation with aerobic granular sludge, two granular reactors were operated under low (1-2 mg O₂·L^-1) and high DO (3-5 mg O₂·L^-1) conditions with similar effluent ammonium concentrations (>20 mg N·L^-1). The results showed that though nitritation with an average nitrite accumulation ratio of above 95% was finally achieved in both reactors, a five-fold start-up time (eleven weeks) was required for the low DO reactor compared to the high DO reactor. Moreover, the nitritation performance was positively correlated with the extent of nitrifiers stratification in granules. The faster startup of nitritation under high DO conditions mainly resulted from the faster formation of well-stratified nitrifiers, with ammonium oxidizing bacteria (AOB) dominating granule surface. High DO operation combined with sufficient ammonium supply ensured the faster growth of AOB, which should provide a competitive advantage to AOB in competing for habitable space (i.e., granule surface). Besides, the lower porosity, larger size, and more active extracellular polymeric substances (particularly proteins) production of granules was observed under the high DO condition. Overall, these findings supported the proposition that the switch from mixed to stratified distribution of nitrifiers in granule was primarily driven by their competition for habitable space rather than by oxygen-limitation.

Aerobic granular sludge for high-strength ammonium wastewater treatment: Effect of COD/N ratios, long-term stability and nitrogen removal pathways

Aerobic granular sludge (AGS) technology is increasingly considered for wastewater treatment. AGS stability particularly under lower COD/N ratios is an impediment for AGS technology. This study evaluated AGS stability and nitrogen removal at different loading rates of 0.03 to 4 kg NH4+-N m-3 d-1 and COD/N ratios of 18.3 to 0.13. Ammoniacal and total nitrogen removals were high at 99.9% and 99.3%, respectively, during 440 days. MiSeq sequencing revealed a reduction in bacterial diversity and enrichment of ammonia oxidizing bacteria (AOB), anammox and denitrifying bacteria. Quantitative PCR showed enrichment of AOB, anammox bacteria, Nitrospira and denitrifiers. Chemical data and bacterial community supported occurrence of nitritation and anammox pathways. AGS had stable granular structure with excellent settling properties at lower COD/N ≤ 1. Removal of high-strength ammonium could be partly explained by the existing nitrogen pathways suggesting novel mechanisms. Nevertheless, results presented here support implementation of AGS process for ammonium wastewaters.

New perspectives on microbial communities and biological nitrogen removal processes in wastewater treatment systems

Biological nitrogen removal (BNR) is a critical process in wastewater treatment. Recently, there have new microbial communities been discovered to be capable of performing BNR with novel metabolic pathways. This review presents the up-to-date status on these microorganisms, including ammonia oxidizing archaea (AOA), complete ammonia oxidation (COMAMMOX) bacteria, anaerobic ammonium oxidation coupled to iron reduction (FEAMMOX) bacteria, anaerobic ammonium oxidation (ANAMMOX) bacteria and denitrifying anaerobic methane oxidation (DAMO) microorganism. Their metabolic pathways and enzymatic reactions in nitrogen cycle are demonstrated. Generally, these novel microbial communities have advantages over canonical nitrifiers or denitrifiers, such as higher substrate affinities, better physicochemical tolerances and/or less greenhouse gas emission. Also, their recent development and/or implementation in BNR is discussed and outlook. Finally, the key implications of coupling these microbial communities for BNR are identified. Overall, this review illustrates novel microbial communities that could provide new possibilities for high-performance and energy-saving nitrogen removal from wastewater.

Enhanced nitrite accumulation under mainstream conditions by a combination of free ammonia-based sludge treatment and low dissolved oxygen: reactor performance and microbiome analysis

Partial nitritation under mainstream conditions is one of the major bottlenecks for the application of deammonification processes to municipal wastewater treatment plants. This study aimed at evaluating the combination effect of a side-stream free ammonia (FA) treatment and low dissolved oxygen (0.2 ± 0.1 mg L⁻¹) on inhibiting nitrite oxidizing bacteria (NOB) from enhancing nitrite accumulation in long-term lab-scale experiments. Two continuous floccular sludge reactors treating low-strength synthetic wastewater (60 mg N–NH₄⁺ L⁻¹ without COD) with a fixed nitrogen loading rate of 0.22 ± 0.03 g N per L per day were operated in a varied temperature range of 7–31 °C, with one acting as the experimental reactor and the other as the control. Side-stream sludge treatment with a stepwise elevation of FA concentration (65.2–261.1 mg NH₃ L⁻¹) was carried out every day in the experimental reactor; the nitrite accumulation ratio (NAR, (NO₂–N/(NO₂⁻–N + NO₃⁻–N) × 100%)) in the experimental reactor was always about twice that in the control one. Quantitative PCR (q-PCR) and high-throughput sequencing analyses showed the dominant NOB was mostly Nitrobacter, while there was an alternating trend between Nitrobacter and Nitrospira. Even though the whole microbial communities of each experimental stage between the two reactors were relatively clustered due to an incomplete NOB washout, three abundant metabolisms (amino acid metabolism, pyruvate metabolism and nitrogen metabolism) and key functional genes of nitrification predicted by PICRUSt in the experimental reactor were enriched, providing a better understanding of nitrite accumulation. These results have demonstrated that the positive hybrid effects of FA side-stream sludge treatment and a low DO could enhance nitrite accumulation. It is expected that a complete washout of NOB would be achieved after further process optimization.

An introduction of the combination of side-stream sludge treatment using FA and low DO could more effectively enhance nitrite accumulation than single low DO.

Achieving efficient nitrogen removal from real sewage via nitrite pathway in a continuous nitrogen removal process by combining free nitrous acid sludge treatment and DO control

The incomplete denitrification due to insufficient carbon resource in the wastewater treatment plants (WWTPs) resulted in low nitrogen removal efficiency, which has become a widespread problem in China and all around the world. Reducing the requirement of carbon source by manipulating the nitrogen removal pathway from conventional nitrification-denitrification to partial nitrification-denitrification is considered as an efficient solution. In this article, the feasibility of combining free nitrous acid (FNA) sludge treatment and DO control to achieve partial nitrification-denitrification in a continuous flow system (aerobic-anoxic-oxic process) using real sewage was assessed. The nitrite pathway was rapidly established in the experimental reactor within 23 days by simultaneously lowering DO concentration in aerobic zone to 0.5 mg/L and treating 30% of the activated sludge per day from the reactor in the FNA sludge treatment unit with FNA concentration of 1.2 mg N/L and exposure time of 18 h. The nitrite oxidizing bacteria (NOB) were efficiently washed out and the partial nitrification process could maintain stable in the experimental reactor even after cease of FNA treatment and increase of DO concentrations in the main stream to 1.5 mg/L, with an average nitrite accumulation rate of above 78%. In contrast, the nitrite accumulation rate was just around 58% during low DO concentrations phase and declined quickly to below 1% after the DO concentrations were increased to 1.5 mg/L in the control reactor which only utilized single strategy of DO control to achieve nitrite pathway. Moreover, a better sludge settleability and nitrogen removal performance could also be realized in the experimental reactor. The results of nitrifying bacteria activities and quantities detection demonstrated that although NOB activities in both reactors were effectively inhibited, a certain amount of NOB (6.26 × 10⁶ copies/g MLSS) were remained in the control reactor and multiplied rapidly as the DO concentration increased, which might break down the partial nitrification. Furthermore, the quantity results of nitrogen cycling related functional genes showed that the increment of the ratio of nitrate reduced bacteria to total bacteria was 0.35% larger than that of nitric oxide bacteria in the control reactor, while those two ratios increased similarly by 1.11% and 1.12% in the experimental reactor, respectively, which might be one potential cause of reduction in N₂O emission of nitrite pathway achieved by FNA-based technologies.