Heterotrophic nitrification and biomineralization potential of Pseudomonas sp. HXF1 for the simultaneous removal of ammonia nitrogen and fluoride from groundwater

Enrichment of Terbium(III) under synergistic effect of biosorption and biomineralization by Bacillus sp. DW015 and Sporosarcina pasteurii

Biosorption and biomineralization are commonly used for the immobilization of metal ions. Biosorption is commonly used as a green method to enrich rare earth ions from wastewater. However, little attention has been paid to the facilitating role of biomineralization in the enrichment of rare earth ions. In this study, a strain of Bacillus sp. DW015, isolated from ion adsorption type rare earth ores and a urease-producing strain Sporosarcina pasteurii were used to enrich rare earth elements (REEs) from an aqueous solution. The results indicate that biomineralization accelerates the enrichment of Terbium(III) compared to biosorption alone. Kinetic analysis suggests that the main mode of action of DW015 was biosorption, following pseudo-second-order kinetics (R2 = 0.998). The biomineralization of DW015 did not significantly contribute to the enrichment of Tb(III), whereas excessive biomineralization of S. pasteurii led to a decrease in the enrichment of Tb(III). A synergistic system of biosorption and biomineralization was established by combining the two bacteria, with the optimal mixed bacteria (S. pasteurii:DW015) ratio being 1:19. This study provides fundamental support for the synergistic effect of biosorption and biomineralization and offers a new reference for future microbial-based enrichment methods.

IMPORTANCE

A weak microbially induced calcium carbonate precipitation (MICP) promotes the enrichment of Tb(III) by bacteria, while a strong MICP leads to the release of Tb(III). However, existing explanations cannot elucidate these mechanisms. In this study, the morphology of the bioprecipitation and the degree of Tb(III) enrichment were analyzed by X-ray diffraction (XRD), scanning electron microscopy (SEM), and energy dispersive spectroscopy (EDS). The data revealed that MICP could drive stable attachment of Tb(III) onto the cell surface, forming a Tb-CaCO3 mixed solid phase. Excessive rapid rate of calcite generation could disrupt the Tb(III) adsorption equilibrium, leading to the release of Tb(III). Therefore, in order for Tb(III) to be stably embedded in calcite, it is necessary to have a sufficient number of adsorption sites on the bacteria and to regulate the rate of MICP. This study provides theoretical support for the process design of MICP for the enrichment of rare earth ions.

Microbial-induced calcium precipitation: Bibliometric analysis, reaction mechanisms, mineralization types, and perspectives

Microbial-induced calcium precipitation (MICP) refers to the formation of calcium precipitates induced by mineralization during microbial metabolism. MICP has been widely used as an ecologically sustainable method in environmental, geotechnical, and construction fields. This article reviews the removal mechanisms of MICP for different contaminants in the field of water treatment. The nucleation pathway is explained at both extracellular and intracellular levels, with a focus on evaluating the contribution of extracellular polymers to MICP. The types of mineralization and the regulatory role of enzyme genes in the MICP process are innovatively summarized. Based on this, the environmental significance of MICP is illustrated, and the application prospects of calcium precipitation products are discussed. The research hotspots and development trends of MICP are analyzed by bibliometric methods, and the challenges and future directions of MICP technology are identified. This review aims to provide a theoretical basis for further understanding of the MICP phenomenon in water treatment and the effective removal of multiple pollutants, which will help researchers to find the breakthroughs and innovations in the existing technologies, with a view to making significant progress in MICP technology.

Effects of Cd(II) on nitrogen removal by a heterotrophic nitrification aerobic denitrification bacterium Pseudomonas sp. XF-4

Simultaneous heterotrophic nitrification and aerobic denitrification (SND) is gaining tremendous attention due to its high efficiency and low cost in water treatment. However, SND on an industrial scale is still immature since effects of coexisting pollutants, for example, heavy metals, on nitrogen removal remains largely unresolved. In this study, a HNAD bacterium (Pseudomonas sp. XF-4) was isolated. It could almost completely remove ammonium and nitrate at pH 5-9 and temperature 20 ℃-35 ℃ within 10 h, and also showed excellently simultaneous nitrification and denitrification efficiency under the coexistence of any two of inorganic nitrogen sources with no intermediate accumulation. XF-4 could rapidly grow again after ammonium vanish when nitrite or nitrate existed. There was no significant effects on nitrification and denitrification when Cd(II) was lower than 10 mg/L, and 95 % of Cd(II) was removed by XF-4. However, electron carrier and electron transport system activity was inhibited, especially at high concentration of Cd(II). Overall, this study reported a novel strain capable of simultaneous nitrification and denitrification coupled with Cd(II) removal efficiently. The results provided new insights into treatment of groundwater or wastewater contaminated by heavy metals and nitrogen.

Tracing the impacts of ecological water replenishment on the sources and transformation of groundwater nitrate through isotope and microbial analysis

Ecological water replenishment (EWR) changes the recharge conditions, flow fields, and physicochemical properties of regional groundwater. However, the resulting impacts on mechanisms regulating the sources and transformation of groundwater nitrate remain unclear. This study investigated how EWR influences the sources and transformation processes of groundwater nitrate using an integrated approach of Water chemistry analysis and stable isotopes (δ15N-NO3- and δ18O-NO3-) along with microbial techniques. The results showed that groundwater NO3-N decreased from 12.98 ± 7.39 mg/L to 7.04 ± 8.52 mg/L after EWR. Water chemistry and isotopic characterization suggested that groundwater nitrate mainly originated from sewage and manure. The Bayesian isotope mixing model (MixSIAR) indicated that EWR increased the average contribution of sewage and manure sources to groundwater nitrate from 46 % to 61 %, whereas that of sources of chemical fertilizer decreased from 43 % to 21 %. Microbial community analysis revealed that EWR resulted in a substantial decrease in the relative abundance of Pseudomonas spp denitrificans, from 13.7 % to 0.6 %. Both water chemistry and microbial analysis indicated that EWR weakened denitrification and enhanced nitrification in groundwater. EWR increases the contribution of nitrate to groundwater by promoting the release of sewage and feces in the unsaturated zone. However, the dilution effect caused by EWR was stronger than the contribution of sewage and fecal sources to groundwater nitrate. As a result, EWR helped to reduce groundwater nitrate concentrations. This study showed the effectiveness of integrated isotope and microbial techniques for delineating the sources and transformations of groundwater nitrate influenced by EWR.

Recovery of terbium by Lysinibacillus sp. DW018 isolated from ionic rare earth tailings based on microbial induced calcium carbonate precipitation

Microbial induced calcium carbonate precipitation (MICP) is considered as an environmentally friendly microbial-based technique to remove heavy metals. However, its application in removal and recovery of rare earth from wastewaters remains limited and the process is still less understood. In this study, a urease-producing bacterial strain DW018 was isolated from the ionic rare earth tailings and identified as Lysinibacillus based on 16S rRNA gene sequencing. Its ability and possible mechanism to recover terbium was investigated by using X-ray diffraction (XRD), scanning electron microscopy (SEM), energy dispersive spectroscopy (EDS), and fourier transform infrared spectroscopy (FTIR). The results showed that the urease activity of DW018 could meet the biomineralization requirements for the recovery of Tb3+ from wastewaters. The recovery rate was as high as 98.28% after 10 min of treatment. The optimal conditions for mineralization and recovery were determined as a bacterial concentration of OD600 = 1.0, a temperature range of 35 to 40°C, and a urea concentration of 0.5%. Notably, irrespective of CaCO3 precipitation, the strain DW018 was able to utilize MICP to promote the attachment of Tb3+ to its cell surface. Initially, Tb3+ existed in amorphous form on the bacterial surface; however, upon the addition of a calcium source, Tb3+ was encapsulated in calcite with the growth of CaCO3 at the late stage of the MICP. The recovery effect of the strain DW018 was related to the amino, hydroxyl, carboxyl, and phosphate groups on the cell surface. Overall, the MICP system is promising for the green and efficient recovery of rare earth ions from wastewaters.

Simultaneous removal of ammonia nitrogen, calcium and cadmium in a biofilm reactor based on microbial-induced calcium precipitation: Optimization of conditions, mechanism and community biological response

With the enhancement of environmental governance regulations, the discharge requirements for reverse osmosis wastewater have become increasingly stringent. This study proposes an innovative approach utilizing heterotrophic nitrification and aerobic denitrification (HNAD)-based biomineralization technology, combined with coconut palm silk loaded biochar, to offer a novel solution for resource-efficient and eco-friendly treatment of reverse osmosis wastewater. Zobellella denitrificans sp. LX16 were loaded onto modified coir silk and showed removal efficiencies of up to 97.38, 94.58, 86.24, and 100% for NH4+-N (65 mg L-1), COD (900 mg L-1), Ca2+ (180 mg L-1), and Cd2+ (25 mg L-1). Analysis of the metabolites of microorganisms reveals that coconut palm silk loaded with deciduous biochar (BCPS) not only exerts a protective effect on microorganisms, but also enhances their growth, metabolism, and electron transfer capabilities. Characterization of precipitation phenomena elucidated the mechanism of Cd2+ removal via ion exchange, precipitation, and adsorption. Employing high-throughput and KEGG functional analyses has confirmed the biota environmental response strategies and the identification of key genes like HNAD.

Loofah sponge crosslinked polyethyleneimine loaded with biochar biofilm reactor for ecological remediation of oligotrophic water: Mechanism, performance, and functional characterization

The removal of complex pollutants from oligotrophic water is an important challenge for researchers. In this study, the HCl-modified loofah sponge crosslinked polyethyleneimine loaded with biochar (LS/PEI@biochar) biofilm reactor was adapted to achieve efficient removal of complex pollutants in oligotrophic water. On the 35 d, the average removal efficiency of chemical oxygen demand (COD), ammonia nitrogen (NH4+-N), calcium (Ca2+), and phosphate (PO43--P) in water was 51, 95, 81, and 77 %, respectively. Additionally, it effectively used a low molecular weight carbon source. Scanning electron microscopy (SEM) results showed that the LS/PEI@biochar biocarrier had superior biofilm suspension performance. Meanwhile, analysis of the biocrystals confirmed Ca2+ and PO43- removal through the generation of CaCO3 (calcite and vaterite) and Ca5(PO4)3OH. This study demonstrated that the system has great efficiency and application prospect in treating oligotrophic water on the laboratory scale, and will be further validated for practical application on large-scale oligotrophic water.

Nitrogen removal by a strengthened comprehensive floating bed with embedded pellets made by a newly isolated Pseudomonas sp. Y1

A newly heterotrophic nitrification aerobic denitrification(HN-AD) bacterium Pseudomonas sp. Y1 with highly nitrogen removal ability was isolated from the activated sludge, TN removal rate of which was 99.73%. In this study, two types of different ecology floating bed systems were designed to achieve efficient nitrogen removal in the urban eutrophic landscape water body, one is the comprehensive ecological floating bed(CEFB) system with only Lythrum salicari and the other is the strengthened comprehensive ecological floating bed (SCEFB) system with both Lythrum and embedded pellets made by Y1. The TN removal rates of the CEFB system were 33.82%, 83.84% and 88.91% at 8±1℃, 15±1℃ and 25±1℃, respectively, while the TN removal rates of the SCEFB system increased by nearly 40%, 16% and 11% at the same environment, respectively. The result shows that the SCEFB system can purify the simulated water from surface water body class V to class IV. Thus it has a broad application prospect in the urban eutrophic landscape water body.

Microbial induced calcium precipitation by Zobellella denitrificans sp. LX16 to simultaneously remove ammonia nitrogen, calcium, and chemical oxygen demand in reverse osmosis concentrates

In recent years, with the rapid development of industrial revolution and urbanization, the generation and treatment of a large number of salt-containing industrial wastewater has attracted wide attention. A novel salt-tolerant Zobellella denitrificans sp. LX16 with excellent nitrogen removal and biomineralization capabilities was isolated in this experiment. Kinetic experiments were conducted to determine the optimal condition. Under this condition, chemical oxygen demand (COD) can be entirely removed together with ammonia nitrogen, and the removal efficiency of calcium was 88.09%. Growth curves and nitrogen balance tests showed that strain LX16 not only had good HNAD and MICP capabilities, but also had high nitrite reductase and nitrate reductase activities during this process. Three-dimensional fluorescence results reflected that when external carbon sources were lacking or salinity was high, humic acid could effectively enhance the metabolic activity of heterotrophic nitrifying aerobic denitrifying microorganisms through extracellular electron transfer, and the substances produced in the metabolic process could promote biommineralization. Moreover, combined with SEM, SEM-EDS, XRD and FTIR analysis, it is concluded that the microbial surface can provide nucleation sites to form calcium salts, and with the increase of alkalinity to generate Ca5(PO4)3OH. The theoretical basis for the use of biological treatment in reverse osmosis wastewater have been proved by this experiment.

Improvement of the specific surface area of biochar by calcium-precipitated nanoparticles synthesized by microbial induction as a template skeleton: Removal mechanism of tetracycline in water

The template method is an effective means to improve the specific surface area and porosity of biochar, but the synthesis of template agents and the way they are integrated with biomass materials still need further development. Therefore, the free Pseudomonas sp. Y1 was used to synthesize calcium-precipitated nanoparticles (CPN) on sludge as a fused template skeleton to enlarge the surface area of sludge biochar facilitating the adsorption of tetracycline (TC) in this work. The modified biochar (FBC) showed excellent specific surface area (448.55 m2 g-1) and porosity (0.0053 cm³ g-1), stable morphological structure, abundant active functional groups, and appreciable adsorption capacity (65.43 mg g-1) based on several characterization and adsorption experiments. Moreover, the adsorption model postulated that the removal of TC is mainly a chemisorption-based heat-trapping, disordered multilayer interaction. In detail, this process involved the joint contribution from electrostatic interactions, ligand exchange, hydrogen bonding, π-π bonding, complexation, and pore filling. Meanwhile, the adaptability and stability of FBC were examined by pH and coexisting substances. This template skeleton induced by microorganisms can provide new insight into the modification of biochar with the template method.

Deterministic factors modulating assembly of groundwater microbial community in a nitrogen-contaminated and hydraulically-connected river-lake-floodplain ecosystem

The river-lake-floodplain system (RLFS) undergoes intensive surface-groundwater mass and energy exchanges. Some freshwater lakes are groundwater flow-through systems, serving as sinks for nitrogen (N) entering the lake. Despite the threat of cross-nitrogen contamination, the assembly of the microbial communities in the RLFS was poorly understood. Herein, the distribution, co-occurrence, and assembly pattern of microbial community were investigated in a nitrogen-contaminated and hydraulically-connected RLFS. The results showed that nitrate was widely distributed with greater accumulation on the south than on the north side, and ammonia was accumulated in the groundwater discharge area (estuary and lakeshore). The heterotrophic nitrifying bacteria and aerobic denitrifying bacteria were distributed across the entire area. In estuary and lakeshore with low levels of oxidation-reduction potential (ORP) and high levels of total organic carbon (TOC) and ammonia, dissimilatory nitrate reduction to ammonium (DNRA) bacteria were enriched. The bacterial community had close cooperative relationships, and keystone taxa harbored nitrate reduction potentials. Combined with multivariable statistics and self-organizing map (SOM) results, ammonia, TOC, and ORP acted as drivers in the spatial evolution of the bacterial community, coincidence with the predominant deterministic processes and unique niche breadth for microbial assembly. This study provides novel insight into the traits and assembly of bacterial communities and potential nitrogen cycling capacities in RLFS groundwater.

A microbial flora with superior pollutant removal efficiency and its fermentation process optimization

Microbial flora plays an important role in microorganism-enhanced technology. The pollutant degradation ability and viable counts of these agents are crucial to guarantee their practical application. In this study, an efficient pollutant-degrading microbial flora was screened, its medium components and culture conditions were optimized, and its effect was verified in zeolite trickling filter towers. After a 24 h culture under the optimal conditions, the viable count reached 4.76 × 109 cfu/mL, with the degradation rates of ammonia nitrogen (NH4+-N), nitrate nitrogen (NO3--N), total nitrogen (TN), total phosphorus (TP), and chemical oxygen demand (COD) increased to 93.5%, 100%, 68.3%, 32.6%, and 85%, respectively. After optimizing the feeding strategy, the concentration of viable bacteria reached 5.80 × 109 cfu/mL. In the application effect verification experiment, the degradation rates of NH4+-N, TN, TP, and COD in the experimental group reached 96.69%, 75.18%, 73.82%, and 90.83%, respectively, showing a significant improvement compared to the results of the control group. The main components in the control group were Dokdonella, Brevundimonas, Alishewanella, Rhodobacter, Pseudoxanthomonas, and Thauera, whereas those in the experimental group were Dokdonella, Proteocatella, Rhodobacter, Dechlomonas, and Nitrospira. Proteocatella, Dechlomonas, and Nitrosra, which were unique to the experimental group, are common bacteria used for nitrogen and phosphorus removal. This explains the difference in the sewage treatment capacity between the two groups. This study provides an alternative sewage treatment microbial flora with a reasonable production cost and high degradation efficiency for NH4+-N, TN, TP, and COD.

The performance and mechanism of tetracycline and ammonium removal by Pseudomonas sp. DX-21

To remove ammonium and tetracycline (TC) from wastewater, a new strain, DX-21, was isolated and exhibited simultaneous removal ability. The performance of DX-21 in TC removal, its removal mechanism, and the potential toxicities of the degradation products were investigated with genomics, mass spectrometry, density functional theory calculations, quantitative structure-activity relationship analyses, and Escherichia coli exposure experiments. DX-21 exhibited removal of ammonium (9.64 mg·L-1·h-1) via assimilation, and TC removal (0.85 mg·L-1·h-1) primarily occurred through cell surface bio-adsorption and biodegradation. Among the 12 identified degradation products, the majority exhibited lower toxicities than TC. Moreover, potential degradation pathways were proposed, including hydroxylation and deamination. Furthermore, DX-21 possessed TC resistance genes, various oxygenases and peroxidases that could potentially contribute to TC degradation. DX-21 colonized activated sludge and significantly enhanced the biodegradation of TC. Therefore, DX-21 showed potential for treating wastewater containing both ammonium and TC.

Simultaneous removal of phosphate, calcium, and ammonia nitrogen in a hydrogel immobilized reactor with bentonite/lanthanum/PVA based on microbial induced calcium precipitation

In recent years, it is urgent to solve nitrogen and phosphorus pollution in domestic wastewater. The target strain Pseudomonas sp. Y1 was immobilized using polyvinyl alcohol (PVA) matrix coupled with bentonite and lanthanum (La), respectively, to fabricate four hydrogel materials that used to construct bioreactors. The optimal operating parameters and dephosphorization mechanism were discussed, and the effects of hydrogel materials and different loads on the performance of the bioreactor were contrastively analyzed. The results manifested that when the hydraulic retention time (HRT) was 6.0 h, the C/N was 6.0, and the Ca²⁺ concentration was 100.0 mg L^-1, the bioreactors had the best heterotrophic nitrification-aerobic denitrification (HNAD) and biomineralization capacity, and the maximum removal efficiencies of Ca²⁺, PO₄^3--P, and NH₄⁺-N were 82.57, 99.17, and 89.08%, respectively. The operation data indicated that the addition of bentonite significantly promoted HNAD, and the bioreactor had stronger dephosphorization ability in the presence of La. The main phosphorous removal mechanisms were confirmed to be adsorption and co-precipitation. Finally, high-throughput sequencing results indicated that Pseudomonas accounted for the paramount proportion in the bioreactor, and the prediction of functional genes indicated that the C/N of 6.0 is more favorable for the expression of nitrogen removal-related functional genes in the bioreactor system. This study highlights the superiority of microbial induced calcium precipitation (MICP) combined with PVA hydrogel, and provides a theoretical basis for simultaneous nitrogen and phosphate removal of wastewater.

A promising approach for simultaneous removal of ammonia and multiple heavy metals from landfill leachate by carbonate precipitating bacterium

The effective and cheap remediation of ammonia (NH⁺₄) and multiple heavy metals from landfill leachate is currently a grand challenge. In this study, Paracoccus denitrificans AC-3, a bacterial strain capable of heterotrophic nitrification aerobic denitrification (HNAD) and carbonate precipitation, exhibited good tolerance to a variety of heavy metals and could remove 99.70% of NH⁺₄, 99.89% of zinc (Zn²⁺), 97.42% of cadmium (Cd²⁺) and 46.19% of nickel (Ni²⁺) simultaneously after 24 h of incubation. The conversion pathway of NH⁺₄ by strain AC-3 was dominated by assimilation (84.68%), followed by HNAD (14.93%), and the increase in environmental pH was mainly dependent on assimilation rather than HNAD. Calcium (Ca²⁺) primarily played four roles in heavy metal mineralization: (ⅰ) improving bacterial tolerance to heavy metals; (ⅱ) ensuring the HNAD capacity of strain AC-3; (ⅲ) co-precipitating with heavy metals; and (ⅳ) precipitating into calcite to adsorb heavy metals. The heavy metals removal mechanisms were mainly calcite adsorption and formation of carbonate and hydroxide precipitation for Zn²⁺, co-precipitation for Cd²⁺, and adsorption for Ni²⁺. The Zn²⁺, Cd²⁺, and Ni²⁺ precipitates displayed unique morphologies. This research provided a promising biological resource for the simultaneous remediation of NH⁺₄ and heavy metals from landfill leachate.

Microbial-induced calcium carbonate precipitation: Influencing factors, nucleation pathways, and application in waste water remediation

Microbial-induced calcium carbonate precipitation (MICP) is a technique that uses the metabolic action of microorganisms to produce CO₃^2- which combines with free Ca²⁺ to form CaCO₃ precipitation. It has gained widespread attention in water treatment, aimed with the advantages of simultaneous removal of multiple pollutants, environmental protection, and ecological sustainability. This article reviewed the mechanism of MICP at both intra- and extra-cellular levels. It summarized the parameters affecting the MICP process in terms of bacterial concentration, ambient temperature, etc. The current status of MICP application in practical engineering is discussed. Based on this, the current technical difficulties faced in the use of MICP technology were outlined, and future research directions for MICP technology were highlighted. This review helps to improve the design of existing water treatment facilities for the simultaneous removal of multiple pollutants using the MICP and provides theoretical reference and innovative thinking for related research.

Six complex microbial inoculants for removing ammonia nitrogen from waters

To determine the effect of microbial inoculants on the removal of ammonia nitrogen (NH₄ ⁺ -N), six different complex microbial inoculants were studied. In this study, their effectiveness on NH₄ ⁺ -N removal was compared, and their microbial community composition was determined. High-throughput sequencing results showed that Proteobacteria and Firmicutes were the dominant phyla in six samples. Before the reaction, Bacillus, Cyanobacteria, and Mitochondria genera were the dominant genera. The dominant genera were significantly different after the reaction with the addition of bacterial agents. The six water samples were Massilia, Escherichia-Shigella, Brevibacillus, Mitsuaria, Bacillus, and Ralstonia. Among the six complex microbial inoculants, "Gandu nitrifying bacteria (NR₄ )" have the best removal effect on NH₄ ⁺ -N. In addition, the removal effect of six different bacterial agents on chemical oxygen demand (COD) was compared. The results showed that "Bilaiqing ammonia nitrogen removal bacteria agent (NR₅ )" has the best removal effect on COD. Single-factor experiments suggested that the optimal conditions for NR₄ bacteria were pH 7, 30°C, 1.0 g/L of bacterial agent dosage and a wide range of NH₄ ⁺ -N from 30 to 300 mg/L. PRACTITIONER POINTS: The nitrogen removal effects of six different microbial agents were compared. High-throughput sequencing provides important insights into the study of ammonia nitrogen removal by microbial communities. Analysis of six different complex bacterial agents by high-throughput sequencing. The relative abundance of microorganisms is not proportional to the ability to remove NH₄ ⁺ -N Good application effect in urban landscape water body.

A mechanistic review on aerobic denitrification for nitrogen removal in water treatment

The traditional biological nitrogen removal technology consists of two steps: nitrification by autotrophs in aerobic circumstances and denitrification by heterotrophs in anaerobic situations; however, this technology requires a huge area and stringent environmental conditions. Researchers reached the conclusion that the denitrification process could also be carried out in aerobic circumstances with the discovery of aerobic denitrification. The aerobic denitrification process is carried out by aerobic denitrifying bacteria (ADB), most of which are heterotrophic bacteria that can metabolize various forms of nitrogen compounds under aerobic conditions and directly convert ammonia nitrogen to N₂ for discharge from the system. Despite the fact that there is no universal agreement on the mechanism of aerobic denitrification, this article reviewed four current explanations for the denitrification mechanism of ADB, including the microenvironment theory, theory of enzyme, electron transport bottlenecks theory, and omics study, and summarized the parameters affecting the denitrification efficiency of ADB in terms of carbon source, temperature, dissolved oxygen (DO), and pH. It also discussed the current status of the application of aerobic denitrification in practical processes. Following the review, the difficulties of present aerobic denitrification technology are outlined and future research options are highlighted. This review may help to improve the design of current wastewater treatment facilities by utilizing ADB for effective nitrogen removal and provide the engineers with relevant references.

Synchronous removal of ammonia nitrogen, phosphate, and calcium by heterotrophic nitrifying strain Pseudomonas sp. Y1 based on microbial induced calcium precipitation

Pseudomonas sp. Y1, a strain with superior synchronous removal ability of ammonia nitrogen (NH₄⁺-N), phosphate (PO₄^3--P), and calcium (Ca²⁺) was isolated, with the removal efficiencies of 92.04, 99.98, and 83.40 %, respectively. Meanwhile, the chemical oxygen demand (COD) was degraded by 90.33 %. Through kinetic analysis, the optimal cultivated conditions for heterotrophic nitrification-aerobic denitrification (HNAD) and biomineralization were determined. The growth curves experimental results of different nitrogen sources indicated that strain Y1 could remove NH₄⁺-N through HNAD. The results of excitation-emission matrix (EEM) proved that the appearance of extracellular polymeric substances (EPS) promoted the precipitation of phosphate minerals. Finally, the characterization results of the bioprecipitates showed that the HNAD process produced the alkalinity required for microbial induced calcium precipitation (MICP), resulting in the removal of PO₄^3- via adsorption and co-precipitation. This study provides a theoretical basis for the application of microorganisms to achieve synchronous nutrient removal and phosphorus recovery in wastewater.

Remediation of groundwater contaminated with dye using carbon dots technology: Ecotoxicological and microbial community responses

Groundwater pollution poses a serious threat to the main source of clean water globally. Nanoparticles have the potential for remediation of polluted aquifers; however, environmental safety concerns associated with in situ deployments of such technology include potential detrimental effects on microorganisms in terms of toxicity and functional disruptions. In this work, we evaluated a new and ecofriendly approach using carbon dots (CDs) as Fenton-like catalysts to catalyse the degradation of dye-containing groundwater samples. This investigation aimed at evaluating the efficacy of a novel remediation technology in terms of dye degradation and toxicity reduction while assessing its impacts on aquatic microorganisms. Uncontaminated Australian groundwater samples were spiked with methylene blue and incubated in the dark, at 18 °C, under slow agitation, using CDs at 0.5 mg mL^-1 and H₂O₂ at 73.5 mM for 25 h. The dye degradation rate was determined as well as the toxicity of the treated solutions using the Microtox® bioassay. Further, to determine the changes in the groundwater microbial community, 16 S rRNA sequencing was used and evenness and diversity indices were analysed using Pielou's evenness and Simpson index, respectively. This study revealed that dye-containing groundwater were effectively treated by CDs showing a degradation rate of 78-82% and a significant 4-fold reduction in the toxicity. Characterisation of the groundwater microbiota revealed a predominance of at least 60% Proteobacteria phylum in all samples where diversity and evenness were maintained throughout the remediation process. The results showed that CDs could be an efficient approach to treat polluted groundwater and potentially have minimum impact on the environmental microbiome.

Single-step removal of calcium, fluoride, and phenol from contaminated water by Aquabacterium sp. CZ3 via facultative anaerobic microbially induced calcium precipitation: Kinetics, mechanism, and characterization

Confronting the complex contaminated water, Aquabacterium sp. CZ3 could perform microbially induced calcium precipitation (MICP) under facultative anaerobic condition using phenol as supplementary carbon source. Strain CZ3 exhibited a remarkable ability to remove nitrate, fluoride, calcium and phenol with removal rates of 100.00, 87.50, 66.24 and 100.00%, respectively. The Modified Gompertz model was used for kinetic analysis to determine the optimum conditions for denitrification and degradation of phenol. The mechanism of anaerobic MICP was enhanced by measuring the self-aggregation properties of the isolates. The mechanism of fluoride removal was identified as co-precipitation and adsorption by characterization analysis of the bioprecipitation. Furthermore, the changes in soluble metabolites under phenol stress explained the utilization of phenol as a co-substrate by microorganisms. This is a novel report on phenol degradation by anaerobic MICP, which provides a theoretical basis for expanding its practical application.

Simultaneous removal of high concentrations of ammonia nitrogen and calcium by the novel strain Paracoccus denitrificans AC-3 with good environmental adaptability

The novel Paracoccus denitrificans AC-3 strain was isolated and displayed outstanding purification capability for high concentrations of ammonia nitrogen (NH₄⁺-N) and calcium (Ca²⁺). Meanwhile, the strain exhibited excellent environmental adaptability within a wide pH range and high levels of NH₄⁺-N and Ca²⁺. Nitrogen balance analysis demonstrated that the pathways of NH₄⁺-N removal consisted of 80.12% assimilation and 16.60% heterotrophic nitrification aerobic denitrification (HNAD). In addition, Ca²⁺ was removed by forming calcium carbonate (CaCO₃) with carbonate (CO₃^2-) and bicarbonate (HCO₃^-). CO₃^2-and HCO₃^- were obtained from carbon dioxide (CO₂) hydration, which was catalyzed by carbonic anhydrase (CA) secreted by strain AC-3. The alkaline environment for carbonate precipitation was provided by CA and HNAD. The resulting CaCO₃ existed in the form of calcite and exhibited a unique morphology and elemental composition.

Applications of biomass-based materials to remove fluoride from wastewater: A review

Fluoride is one of the essential trace elements for the human body, but excessive fluoride will cause serious environmental and health problems. This paper summarizes researches on the removal of fluoride from aqueous solutions using newly developed or improved biomass materials and biomass-like organic materials in recent years. These biomass materials are classified into chitosan, microorganisms, lignocellulose plant materials, animal attribute materials, biological carbonized materials and biomass-like organic materials, which are explained and analyzed. By comparing adsorption performance and mechanism of adsorbents for removing fluoride, it is found that carbonizing materials and modifying adsorbents with metal ions are more beneficial to improving adsorption efficiency and the adsorption mechanisms are various. The adsorption capacities are still considerable after regeneration. This paper not only reviews the properties of these materials for fluoride removal, but also focuses on the comparison of materials performance and fluoride removal mechanism. Herein, by discussing the improved adsorption performance and research technology development of biomass materials and biomass-like organic materials, various innovative ideas are provided for adsorbing and removing contaminants.

Current technologies and future perspectives for the treatment of complex petroleum refinery wastewater: A review

Petroleum refinery wastewater (PRW) is a complex mixture of hydrocarbons, sulphides, ammonia, oils, suspended and dissolved solids, and heavy metals. As these pollutants are toxic and recalcitrant, it is essential to address the above issue with efficient, economical, and eco-friendly technologies. In this review, initially, an overview of the characteristics of wastewater discharged from different petroleum refinery units is discussed. Further, various pre-treatment and post-treatment strategies for complex PRW are introduced. A segregated approach has been proposed to treat the crude desalting, sour, spent caustic, and oily wastewater of petroleum refineries. The combined systems (e.g., ozonation + moving bed biofilm reactor and photocatalysis + packed bed biofilm reactor) for the treatment of low biodegradability index wastewater (BOD₅/COD < 0.2) were discussed to construct a perspective map and implement the proposed system efficiently. The economic, toxicity, and biodegradability aspects are also introduced, along with research gaps and future scope.

Biologically induced phosphate precipitation in heterotrophic nitrification processes of different microbial aggregates: Influences of nitrogen removal metabolisms and extracellular polymeric substances

Phosphorus (P) removal occurred in heterotrophic nitrification process, but its mechanism has not been fully explored. In this study, the P removal performances, pathways, and mechanisms in heterotrophic nitrification processes of different microbial aggregates (activated sludge and biofilm) were investigated. The results showed that the biofilm reactor had more efficient total nitrogen removal (98.65%) and phosphate removal (94.17%). Heterotrophic nitrification and denitrification processes generated alkalinity for biologically induced phosphate precipitation (BIPP), which contributed to 64.12%-78.81% of the overall P removal. The solid phase P content reached 48.03 mg/gSS with hydroxyapatite and calcium phosphate formation. The study clarified that biofilm was beneficial to BIPP because of the nitrogen removal metabolism and extracellular polymeric substance (EPS). Heterotrophic nitrogen removal metabolism was the driving force of BIPP, while EPS with abundant carboxyl and amide groups promoted the precipitation. The study would provide new insights into simultaneous nutrients removal and P recovery from wastewater.

Synergistic removal of fluoride, calcium, and nitrate in a biofilm reactor based on anaerobic microbially induced calcium precipitation

Fluoride (F^-) and calcium (Ca²⁺) are primary causes of skeleton fluorosis and scaling, posing a grievous threat to aquatic lives and public health. Therefore, a novel strategy for polluted groundwater in immobilized biofilm reactor based on the anaerobic microbial induced calcium precipitation (MICP) was proposed, in which loofah was used as a multifunctional strain Cupriavidus sp. W12 growth carrier. Effects of different hydraulic retention time (HRT), initial F^-concentration, and pH on the synchronous removal of pollutants were examined. Under stable operation conditions, the highest efficiencies for Ca²⁺, F^-, and nitrate (NO₃^--N) reached 76.73%, 94.92%, and 100%, respectively. Furthermore, gas chromatography (GC), Fluorescence excitation-emission matrix (EEM), X-ray diffraction (XRD), Scanning electron microscope-energy dispersive spectroscope (SEM-EDS), and Fourier transform infrared spectrometer (FTIR) comprehensively clarified the mechanism of pollutants removal. The results elucidated that the removal of various pollutants was achieved through a combination of anaerobic MICP, adsorption, and co-precipitation. Besides, high-throughput sequencing analysis showed that Cupriavidus had a predominant proportion of 42.36% in the reactor and had stability against pH impact. As the first application of a biofilm reactor based on anaerobic MICP, it put forward a new insight for efficient defluorination and decalcification.

Brevundimonas diminuta isolated from mines polluted soil immobilized cadmium (Cd2+) and zinc (Zn2+) through calcium carbonate precipitation: Microscopic and spectroscopic investigations

The toxic metal(loid)s TMs resistant bacterium Brevundimonas diminuta was isolated for the first time from mines polluted soil in Fengxian, China, and assessed for its potential for Cd and Zn precipitation in Cd and Zn co-contaminated aqueous solution at various Cd and Zn levels (20, 40, 80, 160, and 200 mg L^-1), pH values (5, 6, 7, 8, and 9), and temperatures (20, 25, 30, and 35 °C). B. diminuta showed a high resistance to both Cd and Zn and was able to precipitate up to 99.2 and 99.7% of dissolved Cd and Zn respectively, at a pH of 7 and temperature of 30 °C. B. diminuta reduced the dissolved concentrations of Cd and Zn below the threshold levels in water. The 3D-EEM analysis revealed the presence of extracellular polymeric substances (EPS) such as tryptophan indicating bacterial growth under Cd/Zn stress. FTIR showed polysaccharides, CO₃^2-, CaCO₃, PO₄^3-, and proteins, which may enhance bacterial growth and metal precipitation. SEM-EDS confirmed the leaf-like and granular shape of the biological precipitation and reduction in the percent weight of TMs, which promoted the adhesion/adsorption of Cd²⁺, Zn²⁺, and Ca²⁺. Moreover, XRD analysis confirmed the precipitation of Cd, Zn, and Ca in the form of CdCO₃/Cd₃(PO₄)₂, ZnCO₃/ZnHPO₄/Zn₂(OH)PO₄/Zn₃(PO₄)₂, and CaCO₃/Ca₅(PO₃)₄OH, respectively. These findings indicate that Brevundimonas diminuta can be used for the bioremediation of TMs-contaminated aquatic environments.

Hypothermia Pseudomonas taiwanensis J488 exhibited strong tolerance capacity to high dosages of divalent metal ions during nitrogen removal process

The nitrogen metabolic pathways of Pseudomonas taiwanensis J488 have not been confirmed from genomic function analysis and its divalent metal ion resistance remains poorly understood. In this study, the key denitrifying gene of Pseudomonas taiwanensis J488, nirB, was determined by draft genome sequencing. The nitrification of ammonium was insensitive to high concentrations of Ca(II), Mn(II), Zn(II), and Cd(II). Similarly, complete nitrite removal was achieved despite Mn(II) and Zn(II) reaching concentrations up to 30 mg/L. Furthermore, the efficiency of nitrate removal was significantly enhanced by 1.33%, 3.33%, 5.99%, and 1.53% with the addition of 0.5 mg/L Ca(II), 20 mg/L Mn(II), 5 mg/L Zn(II), and 2 mg/L Cd(II), respectively, comparison with the control. The bacterial growth in both nitrifying and denitrifying processes was substantially promoted by various dosages of divalent metal ions. These results indicate that divalent metal ions would not severely limit the capacity of strain J488 to purify nitrogen-polluted wastewater.

Effect of bacteria-to-algae volume ratio on treatment performance and microbial community of a novel heterotrophic nitrification-aerobic denitrification bacteria-chlorella symbiotic system

A novel symbiotic system combined by heterotrophic nitrification-aerobic denitrification (HN-AD) mixed bacteria and Chlorella pyrenoidosa was firstly proposed to resolve the poor tolerance and nitrogen removal performance of traditional symbiotic system for treating high ammonia biogas slurry. Results showed that the volume ratio of bacteria to algae had significant effects on nitrogen removal efficiency, microbial community structure, functional bacteria and genes. The optimal ratio was 1/3, and the average removal efficiency of TN and TP increased by 28.9% and 67.6% respectively, compared to those of HN-AD bacteria. High-throughput sequencing indicated nitrogen removal was jointly completed by HN-AD and heterotrophic denitrification. HN-AD bacteria Halomonas and Pseudomonas played a key role in nitrogen removal, and Rhodocyclaceae and Paracoccus took an important part in phosphorus removal. According to the functional gene prediction, the total relative abundance of nitrogen removal genes (0.0127%) and narG, narH and narL genes (0.0054%) were highest in 1/3 system.

Characteristics of a novel heterotrophic nitrification and aerobic denitrification bacterium and its bioaugmentation performance in a membrane bioreactor

A novel bacteria with heterotrophic nitrification and aerobic denitrification ability was obtained from a membrane bioreactor (MBR) and identified as Acinetobacter sp. TSH1. The nitrogen removal characteristics, nitrogen balance analysis, kinetic characteristics, and enhanced biological treatment in MBR of the novel isolated strain TSH1 were determined. Results showed that strain TSH1 could remove approximately 96.6% of NH₄⁺-N, 82.9% of NO₂^--N and 98.7% of NO₃^--N in 24 h, and the corresponding maximum removal rates were 3.64 mg-N/(L·h), 1.77 mg-N/(L·h) and 3.94 mg-N/(L·h). The nitrogen balance analysis indicated that most of NH₄⁺-N (62.6%) and NO₃^--N (71.9%) were transformed to gaseous nitrogen. The kinetic experiments showed that strain TSH1 had a high K_m of 151.64 mg-NH₄⁺-N/L and 203.25 mg-NO₃^--N/L. The enhanced biological treatment of synthetic wastewater in MBR showed that the strain TSH1 can significantly improve the nitrogen removal efficiency.

Simultaneous nitrification and aerobic denitrification by a novel isolated Ochrobactrum anthropi HND19

The study aimed to isolate a novel strain with heterotrophic nitrification and aerobic denitrification ability and evaluate the nitrogen removal characteristics. Results showed that Ochrobactrum anthropi HND19 could remove approximately 98.6% of NH₄⁺-N (104.3 mg·L^-1) and 97.6% of NO₃^--N (98.6 mg·L^-1), and the removal rates achieved 4.28 and 4.01 mg-N/(L·h) by heterotrophic nitrification and aerobic denitrification. The optimal incubate conditions of strain HND19 were 120 rpm (shaking speed), 5 ‰ (salinity), 30 °C (temperature), 7.5 (C/N ratio) with sodium acetate as carbon resource. And the removal efficiency of the total nitrogen (TN) realized 73.4% under the optimal conditions. Functional genes (hao, napA, nirK, norB, and nosZ) involved in the nitrogen removal processes were successfully amplified from strain HND19. These findings indicate that the strain HND19 possesses great application feasibility in treating wastewater with high-intensity nitrogen.