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Su W, Yu Q, Yang J, Han Q, Wang S, Heděnec P, Wang X, Wan-Yan R, Li H. Cadaverine and putrescine exposure influence carbon and nitrogen cycling genes in water and sediment of the Yellow River. J Environ Sci (China) 2024; 142:236-247. [PMID: 38527889 DOI: 10.1016/j.jes.2023.06.016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2023] [Revised: 06/09/2023] [Accepted: 06/11/2023] [Indexed: 03/27/2024]
Abstract
The response patterns of microbial functional genes involved in biogeochemical cycles to cadaver decay is a central topic of recent environmental sciences. However, the response mechanisms and pathways of the functional genes associated with the carbon (C) and nitrogen (N) cycling to cadaveric substances such as cadaverine and putrescine remain unclear. This study explored the variation of functional genes associated with C fixation, C degradation and N cycling and their influencing factors under cadaverine, putrescine and mixed treatments. Our results showed only putrescine significantly increased the alpha diversity of C fixation genes, while reducing the alpha diversity of N cycling genes in sediment. For the C cycling, the mixed treatment significantly decreased the total abundance of reductive acetyl-CoA pathway genes (i.e., acsB and acsE) and lig gene linked to lignin degradation in water, while only significantly increasing the hydroxypropionate-hydroxybutylate cycle (i.e., accA) gene abundance in sediment. For the N cycling, mixed treatment significantly decreased the abundance of the nitrification (i.e., amoB), denitrification (i.e., nirS3) genes in water and the assimilation pathway gene (i.e., gdhA) in sediment. Environmental factors (i.e., total carbon and total nitrogen) were all negatively associated with the genes of C and N cycling. Therefore, cadaverine and putrescine exposure may inhibit the pathway in C fixation and N cycling, while promoting C degradation. These findings can offer some new insight for the management of amine pollution caused by animal cadavers.
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Affiliation(s)
- Wanghong Su
- School of Public Health, Lanzhou University, Lanzhou 730000, China
| | - Qiaoling Yu
- School of Public Health, Lanzhou University, Lanzhou 730000, China
| | - Jiawei Yang
- School of Public Health, Lanzhou University, Lanzhou 730000, China
| | - Qian Han
- School of Public Health, Lanzhou University, Lanzhou 730000, China
| | - Sijie Wang
- School of Public Health, Lanzhou University, Lanzhou 730000, China
| | - Petr Heděnec
- Institute for Tropical Biodiversity and Sustainable Development, University Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia
| | - Xiaochen Wang
- School of Public Health, Lanzhou University, Lanzhou 730000, China
| | - Ruijun Wan-Yan
- School of Public Health, Lanzhou University, Lanzhou 730000, China
| | - Huan Li
- School of Public Health, Lanzhou University, Lanzhou 730000, China; State Key Laboratory of Grassland Agro-ecosystems, Center for Grassland Microbiome, College of pastoral agriculture science and technology, Lanzhou University, Lanzhou 730000, China.
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Meyer C, Jeanbille M, Breuil MC, Bru D, Höfer K, Screpanti C, Philippot L. Soil microbial community fragmentation reveals indirect effects of fungicide exposure mediated by biotic interactions between microorganisms. J Hazard Mater 2024; 470:134231. [PMID: 38598881 DOI: 10.1016/j.jhazmat.2024.134231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 03/22/2024] [Accepted: 04/04/2024] [Indexed: 04/12/2024]
Abstract
Fungicides are used worldwide to improve crop yields, but they can affect non-target soil microorganisms which are essential for ecosystem functioning. Microorganisms form complex communities characterized by a myriad of interspecies interactions, yet it remains unclear to what extent non-target microorganisms are indirectly affected by fungicides through biotic interactions with sensitive taxa. To quantify such indirect effects, we fragmented a soil microbial community by filtration to alter biotic interactions and compared the effect of the fungicide hymexazol between fractions in soil microcosms. We postulated that OTUs which are indirectly affected would exhibit a different response to the fungicide across the fragmented communities. We found that hymexazol primarily affected bacterial and fungal communities through indirect effects, which were responsible for more than 75% of the shifts in relative abundance of the dominant microbial OTUs after exposure to an agronomic dose of hymexazol. However, these indirect effects decreased for the bacterial community when hymexazol doses increased. Our results also suggest that N-cycling processes such as ammonia oxidation can be impacted indirectly by fungicide application. This work sheds light on the indirect impact of fungicide exposure on soil microorganisms through biotic interactions, which underscores the need for higher-tier risk assessment. ENVIRONMENTAL IMPLICATION: In this study, we used a novel approach based on the fragmentation of the soil microbial community to determine to which extent fungicide application could indirectly affect fungi and bacteria through biotic interactions. To assess off-target effects of fungicide on soil microorganisms, we selected hymexazol, which is used worldwide to control a variety of fungal plant pathogens, and exposed arable soil to the recommended field rate, as well as to higher rates. Our findings show that at least 75% of hymexazol-impacted microbial OTUs were indirectly affected, therefore emphasizing the importance of tiered risk assessment.
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Affiliation(s)
- Cara Meyer
- Université Bourgogne Franche-Comté, INRAE, AgroSup Dijon, Agroécologie, 17 rue Sully, 21000 Dijon, France; Syngenta Crop Protection Research Stein, Schaffhauserstrasse 101, 4332 Stein, Switzerland
| | - Mathilde Jeanbille
- Université Bourgogne Franche-Comté, INRAE, AgroSup Dijon, Agroécologie, 17 rue Sully, 21000 Dijon, France
| | - Marie-Christine Breuil
- Université Bourgogne Franche-Comté, INRAE, AgroSup Dijon, Agroécologie, 17 rue Sully, 21000 Dijon, France
| | - David Bru
- Université Bourgogne Franche-Comté, INRAE, AgroSup Dijon, Agroécologie, 17 rue Sully, 21000 Dijon, France
| | - Kristin Höfer
- Syngenta Crop Protection Research Stein, Schaffhauserstrasse 101, 4332 Stein, Switzerland
| | - Claudio Screpanti
- Syngenta Crop Protection Research Stein, Schaffhauserstrasse 101, 4332 Stein, Switzerland
| | - Laurent Philippot
- Université Bourgogne Franche-Comté, INRAE, AgroSup Dijon, Agroécologie, 17 rue Sully, 21000 Dijon, France.
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3
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Han R, Zhang Q, Xu Z. Soil organic nitrogen variation shaped by diverse agroecosystems in a typical karst area: evidence from isotopic geochemistry. PeerJ 2024; 12:e17221. [PMID: 38638157 PMCID: PMC11025543 DOI: 10.7717/peerj.17221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Accepted: 03/20/2024] [Indexed: 04/20/2024] Open
Abstract
Background Soil organic nitrogen (SON) levels can respond effectively to crop metabolism and are directly related to soil productivity. However, simultaneous comparisons of SON dynamics using isotopic tracing in diverse agroecosystems are lacking, especially in karst areas with fragile ecology. Methods To better understand the response of SON dynamics to environmental changes under the coupling of natural and anthropogenic disturbances, SON contents and their stable N isotope (δ15NSON) compositions were determined in abandoned cropland (AC, n = 16), grazing shrubland (GS, n = 11), and secondary forest land (SF, n = 20) from a typical karst area in southwest China. Results The SON contents in the SF (mean: 0.09%) and AC (mean: 0.10%) profiles were obviously lower than those in the GS profile (mean: 0.31%). The δ15NSON values ranged from 4.35‰-7.59‰, 3.79‰-7.23‰, and 1.87‰-7.08‰ for the SF, AC, and GS profiles, respectively. Decomposition of organic matter controlled the SON variations in the secondary forest land by the covered vegetation, and that in the grazing shrubland by goat excreta. δ15NSON ranges were controlled by the covered vegetation, and the δ15NSON fractionations during SON transformation were influenced by microorganisms in all surface soil. Conclusions The excreta of goats that contained 15N-enriched SON induced a heavier δ15NSON composition in the grazed shrubland. Long-term cultivation consumes SON, whereas moderate grazing increases SON content to reduce the risk of soil degradation. This study suggests that optimized crop-livestock production may benefit the sustainable development of agroecosystems in karst regions.
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Affiliation(s)
- Ruiyin Han
- Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Qian Zhang
- Institute of Geographic Sciences and Natural Resources Research, Beijing, China
| | - Zhifang Xu
- Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
- CAS Center for Excellence in Life and Paleoenvironment, Beijing, China
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Zhou Z, Huang F, Chen L, Liu F, Wang B, Tang J. Effects of antibiotics on microbial nitrogen cycling and N 2O emissions: A review. Chemosphere 2024; 357:142034. [PMID: 38615962 DOI: 10.1016/j.chemosphere.2024.142034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2024] [Revised: 03/31/2024] [Accepted: 04/11/2024] [Indexed: 04/16/2024]
Abstract
Sulfonamides, quinolones, tetracyclines, and macrolides are the most prevalent classes of antibiotics used in both medical treatment and agriculture. The misuse of antibiotics leads to their extensive dissemination in the environment. These antibiotics can modify the structure and functionality of microbial communities, consequently impacting microbial-mediated nitrogen cycling processes including nitrification, denitrification, and anammox. They can change the relative abundance of nirK/norB contributing to the emission of nitrous oxide, a potent greenhouse gas. This review provides a comprehensive examination of the presence of these four antibiotic classes across different environmental matrices and synthesizes current knowledge of their effects on the nitrogen cycle, including the underlying mechanisms. Such an overview is crucial for understanding the ecological impacts of antibiotics and for guiding future research directions. The presence of antibiotics in the environment varies widely, with significant differences in concentration and type across various settings. We conducted a comprehensive review of over 70 research articles that compare various aspects including processes, antibiotics, concentration ranges, microbial sources, experimental methods, and mechanisms of influence. Antibiotics can either inhibit, have no effect, or even stimulate nitrification, denitrification, and anammox, depending on the experimental conditions. The influence of antibiotics on the nitrogen cycle is characterized by dose-dependent responses, primarily inhibiting nitrification, denitrification, and anammox. This is achieved through alterations in microbial community composition and diversity, carbon source utilization, enzyme activities, electron transfer chain function, and the abundance of specific functional enzymes and antibiotic resistance genes. These alterations can lead to diminished removal of reactive nitrogen and heightened nitrous oxide emissions, potentially exacerbating the greenhouse effect and related environmental issues. Future research should consider diverse reaction mechanisms and expand the scope to investigate the combined effects of multiple antibiotics, as well as their interactions with heavy metals and other chemicals or organisms.
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Affiliation(s)
- Zikun Zhou
- MOE Key Laboratory of Solid Waste Treatment and Resource Recycle, Southwest University of Science and Technology, Mianyang, Sichuan, PR China
| | - Fuyang Huang
- MOE Key Laboratory of Solid Waste Treatment and Resource Recycle, Southwest University of Science and Technology, Mianyang, Sichuan, PR China.
| | - Linpeng Chen
- Key Laboratory of Groundwater Conservation of MWR, China University of Geosciences (Beijing), Beijing, PR China
| | - Fei Liu
- Key Laboratory of Groundwater Conservation of MWR, China University of Geosciences (Beijing), Beijing, PR China
| | - Bin Wang
- MOE Key Laboratory of Solid Waste Treatment and Resource Recycle, Southwest University of Science and Technology, Mianyang, Sichuan, PR China.
| | - Jie Tang
- College of Environment and Civil Engineering, Chengdu University of Technology, Chengdu, Sichuan, PR China
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Gao D, Xu A, Zhang Y, Liu F, Li H, Liang H. Metagenomic insights into carbon and nitrogen cycling in the water-land transition zone of inland alkaline wetlands. Sci Total Environ 2024; 919:170856. [PMID: 38340836 DOI: 10.1016/j.scitotenv.2024.170856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Revised: 01/16/2024] [Accepted: 02/07/2024] [Indexed: 02/12/2024]
Abstract
Inland alkaline wetlands play a crucial role in maintaining ecological functions. However, these wetlands are becoming more vulnerable to the effects of water level fluctuations caused by global climate change, especially concerning carbon (C) and nitrogen (N) cycling. Here, metagenomics sequencing was used to investigate microorganism diversity, C and N cycling gene abundance at three water level types (D (dry), MF (middle flooded), HF (high flooded)) along an inland alkaline wetland. Our findings reveal that water level was the most important factor in regulating the microbial communities. Distinct shifts in community composition were found along the water level increases, without fundamentally altering their composition. With the increase of water level, the relative abundance of pmoA decreased from 2.5 × 10-5 to 5.1 × 10-6. The C cycling processes shift from predominantly CO2-generated processes under low water levels to CO2 and CH4 co-generated processes under high water levels. The relative abundance of nosZ reached 4.9 × 10-5 in HF, while in D and MF, it is recorded at 4.5 × 10-5 and 3.4 × 10-5, respectively. Water levels accelerate N cycling and generating N2O intermediates. Furthermore, our study highlights the dynamic competition and cooperation between C and N cycling processes. This research provides a comprehensive biological understanding of the influence of varying water levels on soil C and N cycling processes in wetland.
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Affiliation(s)
- Dawen Gao
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing 100044, China; Collaborative Innovation Center of Energy Conservation & Emission Reduction and Sustainable Urban-Rural Development in Beijing, Beijing University of Civil Engineering and Architecture, Beijing 100044, China.
| | - Ao Xu
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing 100044, China; Collaborative Innovation Center of Energy Conservation & Emission Reduction and Sustainable Urban-Rural Development in Beijing, Beijing University of Civil Engineering and Architecture, Beijing 100044, China
| | - Yupeng Zhang
- College of Resources and Environmental Sciences, Henan Agricultural University, No.63 Agricultural Road, Zhengzhou 450002, China
| | - Fengqin Liu
- College of Life Sciences, Henan Agricultural University, No.63 Agricultural Road, Zhengzhou 450002, China
| | - Huiju Li
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing 100044, China; Collaborative Innovation Center of Energy Conservation & Emission Reduction and Sustainable Urban-Rural Development in Beijing, Beijing University of Civil Engineering and Architecture, Beijing 100044, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hong Liang
- Centre for Urban Environmental Remediation, Beijing University of Civil Engineering and Architecture, Beijing 100044, China; Collaborative Innovation Center of Energy Conservation & Emission Reduction and Sustainable Urban-Rural Development in Beijing, Beijing University of Civil Engineering and Architecture, Beijing 100044, China
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6
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Ye R, Huo W, Shao Y, Wang H, Lu W, Zhang H. Fungal community diversity and their contribution to nitrogen cycling in in-situ aerated landfills: Insights from field and laboratory studies. Waste Manag 2024; 179:1-11. [PMID: 38442433 DOI: 10.1016/j.wasman.2024.02.048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Revised: 02/26/2024] [Accepted: 02/27/2024] [Indexed: 03/07/2024]
Abstract
The application of in-situ aeration technology in landfills has been reported to promote fungal growth, but the community diversity and function of fungi in the aerated landfill system remain unknown. This study firstly investigated an in-situ aerated remediation landfill site to characterize the fungal community diversity in refuse. And to further reveal the fungal involvement in the nitrogen cycling system, laboratory-scale simulated aerated landfill reactors were then constructed. The results in the aerated landfill site showed a significant correlation between fungal community structure and ammonia nitrogen content in the refuse. Dominant fungi in the fungal community included commonly found environmental fungi such as Fusarium, Aspergillus, Gibberella, as well as unique fungi in the aerated system like Chaetomium. In the laboratory-scale aerated landfill simulation experiments, the fungal system was constructed using bacterial inhibitor, and nitrogen balance analysis confirmed the significant role of fungal nitrification in the nitrogen cycling process. When ammonia nitrogen was not readily available, fungi converted organic nitrogen to nitrate, serving as the main nitrification mechanism in the system, with a contribution rate ranging from 62.71 % to 100 % of total nitrification. However, when ammonia nitrogen was present in the system, autotrophic nitrification became the main mechanism, and the contribution of fungal nitrification to total nitrification was only 15.96 %. Additionally, fungi were capable of directly utilizing nitrite for nitrate production with a rate of 4.65 mg L-1 d-1. This research article contributes to the understanding of the importance of fungi in the aerated landfill systems, filling a gap in knowledge.
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Affiliation(s)
- Rong Ye
- School of Environment, Tsinghua University, Beijing 100084, China; Nanjing Institute of Environment Sciences, Ministry of Ecology & Environment, Nanjing 210042, China
| | - Weizhong Huo
- School of Environment, Tsinghua University, Beijing 100084, China
| | - Yuchao Shao
- School of Environment, Tsinghua University, Beijing 100084, China
| | - Hongtao Wang
- School of Environment, Tsinghua University, Beijing 100084, China
| | - Wenjing Lu
- School of Environment, Tsinghua University, Beijing 100084, China.
| | - Houhu Zhang
- Nanjing Institute of Environment Sciences, Ministry of Ecology & Environment, Nanjing 210042, China
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Fang W, Huang B, Sun Y, Yan D, Li Y, Bruno T, Roncada P, Wang Q, Cao A. Soil amendments promoting nitrifying bacteria recovery faster than the denitrifying bacteria at post soil fumigation. Sci Total Environ 2024; 908:168041. [PMID: 37898206 DOI: 10.1016/j.scitotenv.2023.168041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 10/19/2023] [Accepted: 10/20/2023] [Indexed: 10/30/2023]
Abstract
Chloropicrin (CP) is a soil fumigant that not only reduces disease-causing pathogenic microbes but regrettably also those that benefit soil quality and crop health. However, we have few knowledge on rapidly restoring populations of beneficial microbes suppressed by CP fumigation. Here we used genetic sequencing technology to monitor changes in the recovery of soil bacteria in response to ammonium sulfate added to the soil following CP fumigation. The results showed that regardless of the N fertilizer addition rate, the accumulated NH4+-N in CP fumigated soil was rapidly consumed within 42 d. The rapid reduction in NH4+-N coincided with the observed recovery nitrogen-cycling microorganisms, especially the nitrification bacteria AOA and AOB that contributed to the formation of NH4+-N. Additionally, we further observed that the resilience index of nitrifying bacteria (AOB and AOA) was greater than the resilience index of denitrifying bacteria that contain the denitrification genes nirS, nirK and nosZ (0.12 to 0.55 vs. -0.27 to 0.073). These results revealed that N fertilizer stimulated the recovery of nitrifying bacteria more than denitrifying bacteria. Our research suggests that ammonium sulfate applied to CP fumigated soil could be used commercially to improve soil health as a result of an increase in beneficial microbes.
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Affiliation(s)
- Wensheng Fang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Bin Huang
- Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao, China.
| | - Yang Sun
- Institute of Plant Protection, Jiangxi Academy of Agricultural Sciences, Nanchang 330200, China
| | - Dongdong Yan
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Yuan Li
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Tilocca Bruno
- Department of Health Sciences, University Magna Graecia of Catanzaro, Catanzaro 88100, Italy
| | - Paola Roncada
- Department of Health Sciences, University Magna Graecia of Catanzaro, Catanzaro 88100, Italy
| | - Qiuxia Wang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
| | - Aocheng Cao
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
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Lv P, Sun S, Li Y, Zhao S, Zhang J, Hu Y, Yue P, Zuo X. Plant composition change mediates climate drought, nitrogen addition, and grazing effects on soil net nitrogen mineralization in a semi-arid grassland in North China. Sci Total Environ 2024; 908:168282. [PMID: 37923269 DOI: 10.1016/j.scitotenv.2023.168282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Revised: 10/18/2023] [Accepted: 10/31/2023] [Indexed: 11/07/2023]
Abstract
Human activities induce alterations of the nitrogen (N) cycle, climate drought, and disturbance (e.g., livestock grazing) regimes at the global scale. Their individual, interactive, and combined effects on soil N cycling in grasslands are unclear. We investigated the N addition, drought, and grazing effects on the N mineralization, as well as their correlations with N-related variables, including the C4 species, shoot biomass (SB), root biomass (RB), plant total nitrogen (PTN), plant total carbon (PTC), soil total nitrogen (STN), soil total carbon (STC), and soil microbial N and C, during a three-year field experiment conducted in a semi-arid grassland in North China. The results showed that N addition increased the nitrate N (NO3--N) and ammonium N (NH4+-N) concentrations, whereas drought decreased the NO3--N concentration because of strengthened N limitation. Pronounced temporal variation in the N mineralization occurred under seasonal drought (maxima in August and September) and under its combination with N addition and grazing (minima in August). RB and the C4 species were positively correlated, whereas STC and the NO3--N concentration were negatively correlated with the N mineralization under the combined influence of the three factors. The structural equation model showed that at the site affected by all three factors, drought indirectly increased the N mineralization by reducing the NO3--N concentration, whereas N addition and grazing did not alter the N mineralization. N addition directly increased while indirectly reduced N mineralization by increasing the NO3--N concentration. Additionally, N addition and grazing increased the C4 species and decreased the STC, consequently enhanced N mineralization. These results highlight the predominant role of drought, when combined with N addition and grazing, in controlling the N mineralization. The N supply balance in semi-arid grasslands could be stabilized in response to increased N addition, climate drought, and grazing.
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Affiliation(s)
- Peng Lv
- Naiman Desertification Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Urat Desert-Grassland Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions, Gansu Province, Lanzhou 730000, China
| | - Shanshan Sun
- Urat Desert-Grassland Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yuqiang Li
- Naiman Desertification Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions, Gansu Province, Lanzhou 730000, China
| | - Shenglong Zhao
- College of Resources and Environmental Engineering, Tianshui Normal University, Tianshui 741000, China
| | - Jing Zhang
- Information Center, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Ya Hu
- Urat Desert-Grassland Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions, Gansu Province, Lanzhou 730000, China
| | - Ping Yue
- Urat Desert-Grassland Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions, Gansu Province, Lanzhou 730000, China
| | - Xiaoan Zuo
- Naiman Desertification Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Urat Desert-Grassland Research Station, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China; Key Laboratory of Stress Physiology and Ecology in Cold and Arid Regions, Gansu Province, Lanzhou 730000, China.
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9
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Zhang X, Lan T, Jiang H, Ye K, Dai Z. Bacterial community driven nitrogen cycling in coastal sediments of intertidal transition zone. Sci Total Environ 2024; 908:168299. [PMID: 37926266 DOI: 10.1016/j.scitotenv.2023.168299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 10/14/2023] [Accepted: 11/01/2023] [Indexed: 11/07/2023]
Abstract
Microorganisms inhabiting in coastal sediments significantly affect the nitrogen cycling in coastal waters and ecosystems. However, the bacterial community that related to the key active nitrogen transformation processes in intertidal transition zone are still not understood. Across a long flat intertidal zone at depths from 0 to 3 m in Daya Bay, China, the bacterial communities in sediments and their driven nitrogen cycling potential were evaluated with environmental factors and 16S rRNA sequencing. The results showed that the intertidal zone is a divide for environmental factors as pH, salinity and C/N ratio, instead of an average shift from freshwater to salt water. At the same time, the environmental factors influenced the abundance of bacterial community related to nitrogen cycling. Across the intertidal zone, the dominant nitrogen transformation processes were different. At the high tide and middle tide sites, the primary nitrogen cycling process was nitrification that worked with Nitrosomonadaceae, Nitrospiraceae, 0319-6A21, and wb1-A12. At the low tide sites, nitrogen fixation was the dominant function conducted by Bradyrhizobiaceae. The reduction of nitrate was carried out with the help of Xanthomonadales but relatively weak in all sampling sites especially for low tide sites. This was mostly because the richness and evenness of bacterial community were the lowest at the low tide sites. Meanwhile, the pH, Cl-, salinity, NH4+, NO3- and C/N ratio were the important factors that shaped the composition of local bacterial community. Further, the nonmetric multidimensional scaling results indicated that there were significant statistical differences in the composition of bacterial community among samples at different layers. The dominant nitrogen cycling processes in coastal sediments at different tide levels were revealed in this study, which offered an extended concept of nitrogen transformation along the groundwater discharge path in the intertidal transition zone. The distributions and compositions of bacterial communities and predicted functions provided a new insight for coastal environment and ecosystem management.
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Affiliation(s)
- Xiaoying Zhang
- Institute of Intelligent Simulation and Early Warning for Subsurface Environment, Jilin University, Changchun 130026, China; College of Construction Engineering, Jilin University, Changchun 130026, China
| | - Tianshan Lan
- Institute of Intelligent Simulation and Early Warning for Subsurface Environment, Jilin University, Changchun 130026, China.
| | - Hongchen Jiang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430074, China
| | - Kexin Ye
- Institute of Intelligent Simulation and Early Warning for Subsurface Environment, Jilin University, Changchun 130026, China
| | - Zhenxue Dai
- Institute of Intelligent Simulation and Early Warning for Subsurface Environment, Jilin University, Changchun 130026, China; College of Construction Engineering, Jilin University, Changchun 130026, China.
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Jiang W, Shen J, Li Y, Wang J, Gong D, Zhu X, Liu X, Liu J, Reis S, Zhu Q, Wu J. Contrasting change trends in dry and wet nitrogen depositions during 2011 to 2020: Evidence from an agricultural catchment in subtropical Central China. Sci Total Environ 2024; 907:168094. [PMID: 37879480 DOI: 10.1016/j.scitotenv.2023.168094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Revised: 09/25/2023] [Accepted: 10/22/2023] [Indexed: 10/27/2023]
Abstract
Over the past decade, China has experienced a decline in atmospheric reactive nitrogen (Nr) emissions. Given that China's subtropical region is a significant nitrogen (N) deposition hotspot, it is essential to accurately quantify the ten-year variations in dry and wet N depositions in the context of reductions in atmospheric Nr emissions. Here, we evaluated the spatiotemporal variation in N deposition on forest, paddy field and tea field ecosystems in a typical subtropical agricultural catchment from 2011 to 2020. Our findings indicated a significant decrease in total N deposition in both the tea field ecosystem (41.5-30.5 kg N ha-1) and the forest ecosystem (40.8-25.7 kg N ha-1) (P < 0.05), but no significant change in the paddy field ecosystem (29.3-32.9 kg N ha-1). Specifically, dry N deposition exhibited significant declines except in the paddy field ecosystem, whereas wet N deposition had no significant change. The reduction in total oxidized and reduced N depositions in forest and tea field ecosystems is attributed to the decrease in NOx and NH3 emissions. Additionally, The ratio of NHx deposition to total N deposition all exceeded 0.5 in three ecosystems and the NHx/NOy ratio had an increasing trend (P < 0.05) in the paddy field, indicating that reactive N emissions from agricultural sources were the primary contributor to overall N deposition. Our study emphasizes that despite the decreasing trend in N deposition, it still exceeds the critical loads of natural ecosystems and requires stringent N emissions control, particularly from agricultural sources, in the future.
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Affiliation(s)
- Wenqian Jiang
- Key Laboratory for Agro-ecological Processes in Subtropical Regions, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Changsha Research Station for Agricultural & Environmental Monitoring, Chinese Academy of Sciences, Changsha 410125, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jianlin Shen
- Key Laboratory for Agro-ecological Processes in Subtropical Regions, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Changsha Research Station for Agricultural & Environmental Monitoring, Chinese Academy of Sciences, Changsha 410125, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Yong Li
- University of Chinese Academy of Sciences, Beijing 100049, China; State Key Laboratory of Atmospheric Boundary Layer Physics and Atmospheric Chemistry, Institute of Atmospheric Physics, Chinese Academy of Sciences, Beijing 100029, China
| | - Juan Wang
- Key Laboratory for Agro-ecological Processes in Subtropical Regions, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Changsha Research Station for Agricultural & Environmental Monitoring, Chinese Academy of Sciences, Changsha 410125, China
| | - Dianlin Gong
- Key Laboratory for Agro-ecological Processes in Subtropical Regions, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Changsha Research Station for Agricultural & Environmental Monitoring, Chinese Academy of Sciences, Changsha 410125, China
| | - Xiao Zhu
- Key Laboratory for Agro-ecological Processes in Subtropical Regions, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Changsha Research Station for Agricultural & Environmental Monitoring, Chinese Academy of Sciences, Changsha 410125, China
| | - Xuejun Liu
- College of Resources and Environmental Sciences, China Agricultural University, Beijing 100193, China
| | - Ji Liu
- Hubei Province Key Laboratory for Geographical Process Analysis and Simulation, Central China Normal University, Wuhan 430079, China
| | - Stefan Reis
- UK Centre for Ecology & Hydrology, Bush Estate, Penicuik, Midlothian EH26 0QB, UK
| | - Qihong Zhu
- Key Laboratory for Agro-ecological Processes in Subtropical Regions, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Changsha Research Station for Agricultural & Environmental Monitoring, Chinese Academy of Sciences, Changsha 410125, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jinshui Wu
- Key Laboratory for Agro-ecological Processes in Subtropical Regions, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China; Changsha Research Station for Agricultural & Environmental Monitoring, Chinese Academy of Sciences, Changsha 410125, China; University of Chinese Academy of Sciences, Beijing 100049, China
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11
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Liu Z, Wen J, Liu Z, Wei H, Zhang J. Polyethylene microplastics alter soil microbial community assembly and ecosystem multifunctionality. Environ Int 2024; 183:108360. [PMID: 38128384 DOI: 10.1016/j.envint.2023.108360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 11/27/2023] [Accepted: 11/28/2023] [Indexed: 12/23/2023]
Abstract
Although pervasive microplastics (MPs) pollution in terrestrial ecosystems invites increasing global concern, impact of MPs on soil microbial community assembly and ecosystem multifunctionality received relatively little attention. Here, we manipulated a mesocosm experiment to investigate how polyethylene MPs (PE MPs; 0, 1%, and 5%, w/w) influence ecosystem functions including plant production, soil quality, microbial community diversity and assembly, enzyme activities in carbon (C), nitrogen (N) and phosphorus (P) cycling, and multifunctionality in the maize-soil continuum. Results showed that PE MPs exerted negligible effect on plant biomass (dry weight). The treatment of 5% PE MPs caused declines in the availability of soil water, C and P, whereas enhanced soil pH and C storage. The activity of C-cycling enzymes (α/β-1, 4-glucosidase and β-D-cellobiohydrolase) was promoted by 1% PE MPs, while that of β-1, 4-glucosidase was inhibited by 5% PE MPs. The 5% PE MPs reduced the activity of N-cycling enzymes (protease and urease), whereas increased that of the P-cycling enzyme (alkaline phosphatase). The 5% PE MPs shifted soil microbial community composition, and increased the number of specialist species, microbial community stability and networks resistance. Moreover, PE MPs altered microbial community assembly, with 5% treatment decreasing dispersal limitation proportion (from 13.66% to 9.96%). Overall, ecosystem multifunctionality was improved by 1% concentration, while reduced by 5% concentration of PE MPs. The activity of α/β-1, 4-glucosidase, urease and protease, and ammonium-N content were the most important predictors of ecosystem multifunctionality. These results underscore that PE MPs can alter soil microbial community assembly and ecosystem multifunctionality, and thus development and implementation of practicable solutions to control soil MPs pollution become increasingly imperative in sustainable agricultural production.
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Affiliation(s)
- Ziqiang Liu
- Guangdong Laboratory for Lingnan Modern Agriculture, Key Laboratory of Agro-Environment in the Tropics, Ministry of Agriculture and Rural Affairs, South China Agricultural University, Guangzhou 510642, China; Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Jiahao Wen
- Guangdong Laboratory for Lingnan Modern Agriculture, Key Laboratory of Agro-Environment in the Tropics, Ministry of Agriculture and Rural Affairs, South China Agricultural University, Guangzhou 510642, China; Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Zhenxiu Liu
- Guangdong Laboratory for Lingnan Modern Agriculture, Key Laboratory of Agro-Environment in the Tropics, Ministry of Agriculture and Rural Affairs, South China Agricultural University, Guangzhou 510642, China; Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China
| | - Hui Wei
- Guangdong Laboratory for Lingnan Modern Agriculture, Key Laboratory of Agro-Environment in the Tropics, Ministry of Agriculture and Rural Affairs, South China Agricultural University, Guangzhou 510642, China; Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China; Guangdong Engineering Technology Research Centre of Modern Eco-agriculture and Circular Agriculture, South China Agricultural University, Guangzhou 510642, China.
| | - Jiaen Zhang
- Guangdong Laboratory for Lingnan Modern Agriculture, Key Laboratory of Agro-Environment in the Tropics, Ministry of Agriculture and Rural Affairs, South China Agricultural University, Guangzhou 510642, China; Department of Ecology, College of Natural Resources and Environment, South China Agricultural University, Guangzhou 510642, China; Guangdong Engineering Technology Research Centre of Modern Eco-agriculture and Circular Agriculture, South China Agricultural University, Guangzhou 510642, China.
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12
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Hao Z, Wang Q, Wang J, Deng Y, Yan Z, Tian L, Jiang H. Water Level Fluctuations Modulate the Microbiomes Involved in Biogeochemical Cycling in Floodplains. Microb Ecol 2023; 87:24. [PMID: 38159125 DOI: 10.1007/s00248-023-02331-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Accepted: 12/08/2023] [Indexed: 01/03/2024]
Abstract
Drastic changes in hydrological conditions within floodplain ecosystems create distinct microbial habitats. However, there remains a lack of exploration regarding the variations in microbial function potentials across the flooding and drought seasons. In this study, metagenomics and environmental analyses were employed in floodplains that experience hydrological variations across four seasons. Analysis of functional gene composition, encompassing nitrogen, carbon, and sulfur metabolisms, revealed apparent differences between the flooding and drought seasons. The primary environmental drivers identified were water level, overlying water depth, submergence time, and temperature. Specific modules, e.g., the hydrolysis of β-1,4-glucosidic bond, denitrification, and dissimilatory/assimilatory nitrate reduction to ammonium, exhibited higher relative abundance in summer compared to winter. It is suggested that cellulose degradation was potentially coupled with nitrate reduction during the flooding season. Phylogenomic analysis of metagenome-assembled genomes (MAGs) unveiled that the Desulfobacterota lineage possessed abundant nitrogen metabolism genes supported by pathway reconstruction. Variation of relative abundance implied its environmental adaptability to both the wet and dry seasons. Furthermore, a novel order was found within Methylomirabilota, containing nitrogen reduction genes in the MAG. Overall, this study highlights the crucial role of hydrological factors in modulating microbial functional diversity and generating genomes with abundant nitrogen metabolism potentials.
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Affiliation(s)
- Zheng Hao
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, 73 East Beijing Road, Nanjing, 210008, China
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Qianhong Wang
- Changjiang Nanjing Waterway Engineering Bureau, Nanjing, 210011, China
| | - Jianjun Wang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, 73 East Beijing Road, Nanjing, 210008, China
| | - Ye Deng
- CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing, 100085, China
| | - Zaisheng Yan
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, 73 East Beijing Road, Nanjing, 210008, China
| | - Linqi Tian
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, 73 East Beijing Road, Nanjing, 210008, China
| | - Helong Jiang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, 73 East Beijing Road, Nanjing, 210008, China.
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13
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Li J, Yang L, Yu S, Ding A, Zuo R, Yang J, Li X, Wang J. Environmental stressors altered the groundwater microbiome and nitrogen cycling: A focus on influencing mechanisms and pathways. Sci Total Environ 2023; 905:167004. [PMID: 37704146 DOI: 10.1016/j.scitotenv.2023.167004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Revised: 08/10/2023] [Accepted: 09/09/2023] [Indexed: 09/15/2023]
Abstract
Nitrogen cycling, as an important biogeochemical process in groundwater, strongly impacts the energy and matter flow of groundwater ecology. Phthalate esters (PAEs) were screened as key environmental stressors in the groundwater of Beijing, contributing to the alteration of microbial community structure and functions; thus, it could be deduced that these stressors might influence nitrogen cycling that is almost exclusively mediated by microorganisms. Identification of the influences of PAEs on groundwater nitrogen cycling and exploration of the potential influence mechanisms and pathways are vital but still challenging. This study explored the influence mechanisms and pathways of the environmental stressor PAE on nitrogen cycling in groundwater collected from a typical monitoring station in Beijing based on high-throughput sequencing and bioinformatics analysis combined with mediation analysis methods. The results suggested that among the 5 detected PAEs, dimethyl phthalate and diethyl phthalate significantly negatively impacted nitrogen cycling processes, especially nitrogen fixation and denitrification processes (p < 0.05), in groundwater. Their influences were fully or partially mediated by functional microorganisms, particularly assigned keystone genera (such as Dechloromonas, Aeromonas and Noviherbaspirillum), whose abundance was significantly inhibited by these PAEs via dysregulation of carbohydrate metabolism and activation of defense mechanisms. These findings confirmed that the influences of environmental stressors PAEs on nitrogen cycling in groundwater might be mediated by the "PAE stress-groundwater microbiome-nitrogen cycling alteration" pathway. This study may advance the understanding of the consequences of environmental stressors on groundwater ecology and support the ecological hazard assessment of groundwater stressors.
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Affiliation(s)
- Jian Li
- Engineering Research Center of Groundwater Pollution Control and Remediation, Ministry of Education, College of Water Sciences, Beijing Normal University, Beijing 100875, China.
| | - Lei Yang
- Engineering Research Center of Groundwater Pollution Control and Remediation, Ministry of Education, College of Water Sciences, Beijing Normal University, Beijing 100875, China
| | - Shihang Yu
- Engineering Research Center of Groundwater Pollution Control and Remediation, Ministry of Education, College of Water Sciences, Beijing Normal University, Beijing 100875, China
| | - Aizhong Ding
- Engineering Research Center of Groundwater Pollution Control and Remediation, Ministry of Education, College of Water Sciences, Beijing Normal University, Beijing 100875, China
| | - Rui Zuo
- Engineering Research Center of Groundwater Pollution Control and Remediation, Ministry of Education, College of Water Sciences, Beijing Normal University, Beijing 100875, China
| | - Jie Yang
- Engineering Research Center of Groundwater Pollution Control and Remediation, Ministry of Education, College of Water Sciences, Beijing Normal University, Beijing 100875, China
| | - Xiaofei Li
- Engineering Research Center of Groundwater Pollution Control and Remediation, Ministry of Education, College of Water Sciences, Beijing Normal University, Beijing 100875, China
| | - Jinsheng Wang
- Engineering Research Center of Groundwater Pollution Control and Remediation, Ministry of Education, College of Water Sciences, Beijing Normal University, Beijing 100875, China; Advanced Institute of Natural Sciences, Beijing Normal University at Zhuhai, Zhuhai 519087, China.
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14
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Qiao Z, Sheng Y, Wang G, Chen X, Liao F, Mao H, Zhang H, He J, Liu Y, Lin Y, Yang Y. Deterministic factors modulating assembly of groundwater microbial community in a nitrogen-contaminated and hydraulically-connected river-lake-floodplain ecosystem. J Environ Manage 2023; 347:119210. [PMID: 37801950 DOI: 10.1016/j.jenvman.2023.119210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 09/25/2023] [Accepted: 09/30/2023] [Indexed: 10/08/2023]
Abstract
The river-lake-floodplain system (RLFS) undergoes intensive surface-groundwater mass and energy exchanges. Some freshwater lakes are groundwater flow-through systems, serving as sinks for nitrogen (N) entering the lake. Despite the threat of cross-nitrogen contamination, the assembly of the microbial communities in the RLFS was poorly understood. Herein, the distribution, co-occurrence, and assembly pattern of microbial community were investigated in a nitrogen-contaminated and hydraulically-connected RLFS. The results showed that nitrate was widely distributed with greater accumulation on the south than on the north side, and ammonia was accumulated in the groundwater discharge area (estuary and lakeshore). The heterotrophic nitrifying bacteria and aerobic denitrifying bacteria were distributed across the entire area. In estuary and lakeshore with low levels of oxidation-reduction potential (ORP) and high levels of total organic carbon (TOC) and ammonia, dissimilatory nitrate reduction to ammonium (DNRA) bacteria were enriched. The bacterial community had close cooperative relationships, and keystone taxa harbored nitrate reduction potentials. Combined with multivariable statistics and self-organizing map (SOM) results, ammonia, TOC, and ORP acted as drivers in the spatial evolution of the bacterial community, coincidence with the predominant deterministic processes and unique niche breadth for microbial assembly. This study provides novel insight into the traits and assembly of bacterial communities and potential nitrogen cycling capacities in RLFS groundwater.
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Affiliation(s)
- Zhiyuan Qiao
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing, 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing, 100083, PR China
| | - Yizhi Sheng
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing, 100083, PR China.
| | - Guangcai Wang
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing, 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing, 100083, PR China.
| | - Xianglong Chen
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing, 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing, 100083, PR China
| | - Fu Liao
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing, 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing, 100083, PR China
| | - Hairu Mao
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing, 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing, 100083, PR China
| | - Hongyu Zhang
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing, 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing, 100083, PR China
| | - Jiahui He
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing, 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing, 100083, PR China
| | - Yingxue Liu
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing, 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing, 100083, PR China
| | - Yilun Lin
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing, 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing, 100083, PR China
| | - Ying Yang
- State Key Laboratory of Biogeology and Environmental Geology & MOE Key Laboratory of Groundwater Circulation and Environment Evolution, China University of Geosciences, Beijing, 100083, PR China; School of Water Resources and Environment, China University of Geosciences, Beijing, 100083, PR China
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15
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Chien SC, Krumins JA. Anthropogenic effects on global soil nitrogen pools. Sci Total Environ 2023; 902:166238. [PMID: 37586519 DOI: 10.1016/j.scitotenv.2023.166238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Revised: 08/07/2023] [Accepted: 08/09/2023] [Indexed: 08/18/2023]
Abstract
The amount of nitrogen stored in terrestrial soils, its "nitrogen pool", moderates biogeochemical cycling affecting primary productivity, nitrogen pollution and even carbon budgets. The soil nitrogen pools and the transformation of nitrogen forms within them are heavily influenced by environmental factors including anthropogenic activities. However, our understanding of the global distribution of soil nitrogen with respect to anthropogenic activity and human land use remains unclear. We constructed a meta-analysis from a global sampling, in which we compare soil total nitrogen pools and the driving mechanisms affecting each pool across three major classifications of human land use: natural, agricultural, and urban. Although the size of the nitrogen pool can be similar across natural, agricultural and urban soils, the ecological and human associated drivers vary. Specifically, the drivers within agricultural and urban soils as opposed to natural soils are more complex and often decoupled from climatic and soil factors. This suggests that the nitrogen pools of those soils may be co-moderated by other factors not included in our analyses, like human activities. Our analysis supports the notion that agricultural soils act as a nitrogen source while urban soils as a nitrogen sink and informs a modern understanding of the fates and distributions of anthropogenic nitrogen in natural, agricultural, and urban soils.
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Affiliation(s)
- Shih-Chieh Chien
- Doctoral Program in Environmental Science and Management, Montclair State University, Montclair, NJ, 07043, USA.
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16
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Niu Y, An Z, Gao D, Chen F, Zhou J, Liu B, Qi L, Wu L, Lin Z, Yin G, Liang X, Dong H, Liu M, Hou L, Zheng Y. Tidal dynamics regulates potential coupling of carbon‑nitrogen‑sulfur cycling microbes in intertidal flats. Sci Total Environ 2023; 899:165663. [PMID: 37474052 DOI: 10.1016/j.scitotenv.2023.165663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Revised: 07/17/2023] [Accepted: 07/17/2023] [Indexed: 07/22/2023]
Abstract
Tide-driven hydrodynamic process causes significant geochemical gradients that influence biogeochemical cycling and ecological functioning of estuarine and coastal ecosystems. However, the effects of tidal dynamics on microbial communities, particularly at the functional gene level, remain unclear even though microorganisms play critical roles in biogeochemical carbon (C), nitrogen (N) and sulfur (S) cycling. Here, we used 16S rRNA gene amplicon sequencing and microarray-based approach to reveal the stratification of microorganisms related to C, N and S cycles along vertical redox gradients in intertidal wetlands. Alpha-diversity of bacteria and archaea was generally higher at the deep groundwater-sediment interface. Microbial compositions were markedly altered along the sediment profile, and these shifts were largely due to changes in nutrient availability and redox potential. Furthermore, functional genes exhibited redox partitioning between interfaces and transition layer, with abundant genes involved in C decomposition, methanogenesis, heterotrophic denitrification, sulfite reduction and sulfide oxidation existed in the middle anoxic zone. The influence of tidal dynamics on sediment function was highly associated with redox state, sediment texture, and substrates availability, leading to distinct distribution pattern of metabolic coupling of microbes involved in energy flux and elemental cycling in intertidal wetlands. These results indicate that tidal cycles are critical in determining microbial community and functional structure, and they provide new insights into sediment microbe-mediated biogeochemical cycling in intertidal habitats.
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Affiliation(s)
- Yuhui Niu
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China; Shanghai Academy of Landscape Architecture Science and Planning, Shanghai 200232, China
| | - Zhirui An
- School of Geographic Sciences, East China Normal University, Shanghai 200241, China; Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China
| | - Dengzhou Gao
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Feiyang Chen
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Jie Zhou
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Bolin Liu
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Lin Qi
- School of Geographic Sciences, East China Normal University, Shanghai 200241, China; Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China
| | - Li Wu
- School of Geographic Sciences, East China Normal University, Shanghai 200241, China; Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China
| | - Zhuke Lin
- School of Geographic Sciences, East China Normal University, Shanghai 200241, China; Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China
| | - Guoyu Yin
- School of Geographic Sciences, East China Normal University, Shanghai 200241, China; Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China
| | - Xia Liang
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Hongpo Dong
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Min Liu
- School of Geographic Sciences, East China Normal University, Shanghai 200241, China; Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China
| | - Lijun Hou
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Yanling Zheng
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China; School of Geographic Sciences, East China Normal University, Shanghai 200241, China; Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China.
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17
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Shan Y, Fu Y, Wang L, Yao Y. Response of the nitrogen processing bacterial community to water level fluctuation and nitrate availability in an intact marsh soil column. Environ Sci Pollut Res Int 2023; 30:111947-111957. [PMID: 37819472 DOI: 10.1007/s11356-023-30020-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Accepted: 09/18/2023] [Indexed: 10/13/2023]
Abstract
Wetlands are known to experience fluctuations in water levels and receive exogenous nitrogen inputs that affect various organisms, including soil microorganisms. To study the impact of these factors on microbial diversity, we collected intact soil columns from a Phragmites australis-dominated site in the Qixing River National Nature Reserve in Northeast China. In a laboratory experiment, we simulated water level fluctuations and exogenous nitrogen inputs to the soil columns and examined the associated changes in the relative abundance of 51 bacterial genera involved in nitrogen cycling processes. Our findings revealed that different bacterial genera exhibited varying relative abundances across treatments. Specifically, Massilia showed the highest total relative abundance at the genus level, while Planctomyces had the second highest, and Campylobacter had the lowest abundance. The DESeq2 model, based on negative binomial distribution, revealed that the tags of bacterial genera were significantly correlated with soil depth, but not with water levels or nitrogen concentrations. However, the addition of a 30 mg/L nitrate solution caused a decrease in the relative abundances of bacterial genera with decreasing water levels, while a 60 mg/L concentration of nitrogen resulted in a decrease and then an increase in the relative abundances of bacterial genera with decreasing water levels. Our study provides valuable insights into the response of nitrogen-cycling bacteria to changes in different environmental conditions.
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Affiliation(s)
- Yuanqi Shan
- Wetland Biodiversity Conservation and Research Center, Northeast Forestry University, No. 26 Hexing Road, Xiangfang District, Harbin, 150040, China
- College of Wildlife and Protected Area, Northeast Forestry University, No. 26 Hexing Road, Xiangfang District, Harbin, 150040, China
| | - Yi Fu
- Wetland Biodiversity Conservation and Research Center, Northeast Forestry University, No. 26 Hexing Road, Xiangfang District, Harbin, 150040, China
- College of Wildlife and Protected Area, Northeast Forestry University, No. 26 Hexing Road, Xiangfang District, Harbin, 150040, China
| | - Lei Wang
- College of Landscape Architectrue, Northeast Forestry University, No. 26 Hexing Road, Xiangfang District, Harbin, 150040, China
| | - Yunlong Yao
- Wetland Biodiversity Conservation and Research Center, Northeast Forestry University, No. 26 Hexing Road, Xiangfang District, Harbin, 150040, China.
- College of Wildlife and Protected Area, Northeast Forestry University, No. 26 Hexing Road, Xiangfang District, Harbin, 150040, China.
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18
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Zhang A, Wang Y, Li Y, Tan Y, Liu P, Lv X, Lei K. Multiple isotopes reveal the driving forces of nitrogen cycling from freshwater to brackish water. Sci Total Environ 2023; 897:165396. [PMID: 37437639 DOI: 10.1016/j.scitotenv.2023.165396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 07/05/2023] [Accepted: 07/06/2023] [Indexed: 07/14/2023]
Abstract
Rivers play a crucial role in global nitrogen (N) cycling, but revealing the driving mechanism of N cycling remains challenging because of the complex natural background gradients. The Qiantang River Basin provides an opportunity to elucidate the driving mechanism due to the complex climatic and hydrological conditions. In this study, the multiple stable isotopes suggested that the conservative mixing of two end members was insufficient to explain the complex behavior of N in both seasons. In-soil processes were the primary N cycling processes that controlled riverine N loading during the wet season, whereas in-stream N biological transformation processes (nitrification and assimilation) were more prevalent during the dry season. The results of MixSIAR revealed that soil sources (soil N and N fertilizer) contributed the most to NO3- during the wet season, accounting for 64.3 %, followed by manure and sewage (31.6 %) and atmospheric precipitation (4.1 %). During the dry season, manure and sewage were the predominant contributors to NO3- (52.1 %), followed by soil N (26.6 %), N fertilizer (18.8 %), and atmospheric precipitation (2.5 %). The relationships between d-excess and δ15N-NH4+ or δ15N-NO3- suggested that both climatic and hydrological conditions would be the driving forces regulating the N transportation and transformation in this basin, leading to the high spatiotemporal heterogeneity in N loading and isotopic compositions. In the wet season, precipitation patterns served as the primary driving forces regulating in-soil biological processes and soil leaching. While the hydrological conditions, especially water residence time, were the crucial factors controlling in-stream biological processes during the dry season. This study elucidates N sources, biotransformation processes, and their driving forces from freshwater to brackish water, which has applications for understanding the N fate from terrene to ocean.
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Affiliation(s)
- Anqi Zhang
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, PR China; Key Lab of Agricultural Soil and Water Engineering in Arid and Semiarid Areas, Ministry of Education, College of Water Resources and Architectural Engineering, Northwest A&F University, Yangling 712100, PR China
| | - Yan Wang
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, PR China
| | - Yi Li
- Key Lab of Agricultural Soil and Water Engineering in Arid and Semiarid Areas, Ministry of Education, College of Water Resources and Architectural Engineering, Northwest A&F University, Yangling 712100, PR China
| | - Yingyu Tan
- Key Laboratory of Environmental Pollution Control Technology of Zhejiang Province, Eco-Environmental Science Research & Design Institute of Zhejiang Province, Hangzhou, Zhejiang 310007, PR China
| | - Pengxia Liu
- Ecology and Environment Monitoring and Scientific Research Center of Taihu Basin & East China Sea Ecology and Environment Supervision Authority, Ministry of Ecology and Environment, Shanghai 200120, China
| | - Xubo Lv
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, PR China
| | - Kun Lei
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, PR China.
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19
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Liu C, Liu H, Liu X, Li G, Zhang Y, Zhang M, Li Z. Metagenomic analysis insights into the influence of 3,4-dimethylpyrazole phosphate application on nitrous oxide mitigation efficiency across different climate zones in Eastern China. Environ Res 2023; 236:116761. [PMID: 37516265 DOI: 10.1016/j.envres.2023.116761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 07/13/2023] [Accepted: 07/26/2023] [Indexed: 07/31/2023]
Abstract
Excessive nitrogen (N) fertilization in agroecological systems increases nitrous oxide (N2O) emissions. 3,4-dimethylpyrazole phosphate (DMPP) is used to mitigate N2O losses. The influence of DMPP efficiency on N2O mitigation was clearly affected by spatiotemporal heterogeneity. Using field and incubation experiments combined with metagenomic sequencing, we aimed to investigate DMPP efficiency and the underlying microbial mechanisms in dark-brown (Siping, SP), fluvo-aquic (Cangzhou, CZ; Xinxiang, XX), and red soil (Wenzhou, WZ) from diverse climatic zones. In the field experiments, the DMPP efficiency in N2O mitigation ranged from 51.6% to 89.9%, in the order of XX, CZ, SP, and WZ. The DMPP efficiency in the incubation experiments ranged from 58.3% to 93.9%, and the order of efficiency from the highest to lowest was the same as that of the field experiments. Soil organic matter, total N, pH, texture, and taxonomic and functional α-diversity were important soil environment and microbial factors for DMPP efficiency. DMPP significantly enriched ammonia-oxidizing archaea (AOA) and nitrite-oxidizing bacteria (NOB), which promoted N-cycling with low N2O emissions. Random forest (RF) and regression analyses found that an AOA (Nitrosocosmicus) and NOB (Nitrospina) demonstrated important and positive correlation with DMPP efficiency. Moreover, genes associated with carbohydrate metabolism were important for DMPP efficiency and could influenced N-cycling and DMPP metabolism. The similar DMPP efficiency indicated that the variation in DMPP efficiency was significantly due to soil physicochemical and microbial variations. In conclusion, filling the knowledge gap regarding the response of DMPP efficiency to abiotic and biotic factors could be beneficial in DMPP applications, and in adapting more efficient strategies to improve DMPP efficiency and mitigate N2O emissions in multiple regions.
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Affiliation(s)
- Churong Liu
- State Key Laboratory of Plant Environmental Resilience, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China; College of Natural Resources and Environment, Joint Institute for Environmental Research and Education, South China Agricultural University, Guangzhou, 10642, China
| | - Hongrun Liu
- State Key Laboratory of Plant Environmental Resilience, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Xueqing Liu
- State Key Laboratory of Plant Environmental Resilience, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Gang Li
- Key Laboratory of Northeast Crop Physiology Ecology and Cultivation, Ministry of Agriculture in People's Republic of China, Jilin Academy of Agricultural Sciences, Changchun, 130033, China.
| | - Yushi Zhang
- State Key Laboratory of Plant Environmental Resilience, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China.
| | - Mingcai Zhang
- State Key Laboratory of Plant Environmental Resilience, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China.
| | - Zhaohu Li
- State Key Laboratory of Plant Environmental Resilience, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
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20
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Broman E, Abdelgadir M, Bonaglia S, Forsberg SC, Wikström J, Gunnarsson JS, Nascimento FJA, Sjöling S. Long-Term Pollution Does Not Inhibit Denitrification and DNRA by Adapted Benthic Microbial Communities. Microb Ecol 2023; 86:2357-2372. [PMID: 37222807 PMCID: PMC10640501 DOI: 10.1007/s00248-023-02241-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Accepted: 05/10/2023] [Indexed: 05/25/2023]
Abstract
Denitrification in sediments is a key microbial process that removes excess fixed nitrogen, while dissimilatory nitrate reduction to ammonium (DNRA) converts nitrate to ammonium. Although microorganisms are responsible for essential nitrogen (N) cycling, it is not yet fully understood how these microbially mediated processes respond to toxic hydrophobic organic compounds (HOCs) and metals. In this study, we sampled long-term polluted sediment from the outer harbor of Oskarshamn (Baltic Sea), measured denitrification and DNRA rates, and analyzed taxonomic structure and N-cycling genes of microbial communities using metagenomics. Results showed that denitrification and DNRA rates were within the range of a national reference site and other unpolluted sites in the Baltic Sea, indicating that long-term pollution did not significantly affect these processes. Furthermore, our results indicate an adaptation to metal pollution by the N-cycling microbial community. These findings suggest that denitrification and DNRA rates are affected more by eutrophication and organic enrichment than by historic pollution of metals and organic contaminants.
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Affiliation(s)
- Elias Broman
- Department of Ecology, Environment and Plant Sciences, Stockholm University, 106 91, Stockholm, Sweden.
- Baltic Sea Centre, Stockholm University, Stockholm, Sweden.
- Department of Environmental Science, School of Natural Sciences, Technology and Environmental Studies, Södertörn University, 141 89, Huddinge, Sweden.
| | - Mohanad Abdelgadir
- Department of Environmental Science, School of Natural Sciences, Technology and Environmental Studies, Södertörn University, 141 89, Huddinge, Sweden
| | - Stefano Bonaglia
- Department of Marine Sciences, Gothenburg University, 413 19, Gothenburg, Sweden
| | - Sara C Forsberg
- Department of Ecology, Environment and Plant Sciences, Stockholm University, 106 91, Stockholm, Sweden
- Department of Environmental Science, School of Natural Sciences, Technology and Environmental Studies, Södertörn University, 141 89, Huddinge, Sweden
| | - Johan Wikström
- Department of Ecology, Environment and Plant Sciences, Stockholm University, 106 91, Stockholm, Sweden
| | - Jonas S Gunnarsson
- Department of Ecology, Environment and Plant Sciences, Stockholm University, 106 91, Stockholm, Sweden
| | - Francisco J A Nascimento
- Department of Ecology, Environment and Plant Sciences, Stockholm University, 106 91, Stockholm, Sweden
- Baltic Sea Centre, Stockholm University, Stockholm, Sweden
| | - Sara Sjöling
- Department of Environmental Science, School of Natural Sciences, Technology and Environmental Studies, Södertörn University, 141 89, Huddinge, Sweden
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21
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Li Y, Xiong L, Yu H, Zeng K, Wei Y, Li H, Zeng W, Ji X. Function and distribution of nitrogen-cycling microbial communities in the Napahai plateau wetland. Arch Microbiol 2023; 205:357. [PMID: 37872393 DOI: 10.1007/s00203-023-03695-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2023] [Revised: 09/27/2023] [Accepted: 09/29/2023] [Indexed: 10/25/2023]
Abstract
Nitrogen is an essential component of living organisms and a major nutrient that limits life on Earth. Until now, freely available nitrogen mainly comes from atmospheric nitrogen, but most organisms rely on bioavailable forms of nitrogen, which depends on the complex network of microorganisms with a wide variety of metabolic functions. Microbial-mediated nitrogen cycling contributes to the biogeochemical cycling of wetlands, but its specific microbial abundance, composition, and distribution need to be studied. Based on the metagenomic data, we described the composition and functional characteristics of microbial nitrogen cycle-related genes in the Napahai plateau wetland. Six nitrogen cycling pathways existed, such as dissimilatory nitrate reduction, denitrification, nitrogen fixation, nitrification, anammox, and nitrate assimilation. Most genes related to the nitrogen cycling in this region come from bacteria, mainly from Proteobacteria and Acidobacteria. Habitat types and nitrogen cycle-related genes largely explained the relative abundance of total nitrogen pathways. Phylogenetic trees were constructed based on nitrogen cycle-related genes from different habitats and sources, combined with PCoA analysis, most of them clustered separately, indicating richness and uniqueness. Some microbial groups seemed to be special or general in the nitrogen cycling. In conclusion, it suggested that microorganisms regulated the N cycling process, and may lead to N loss throughout the wetland, thus providing a basis for further elucidation of the microbial regulation of N cycling processes and the Earth's elemental cycles.
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Affiliation(s)
- Yanmei Li
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China
| | - Lingling Xiong
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China
| | - Hang Yu
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China
| | - Kun Zeng
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China
| | - Yunlin Wei
- Faculty of Life Science and Technology, Kunming University of Science and Technology, Kunming, 650500, China
| | - Haiyan Li
- Medical School, Kunming University of Science and Technology, Kunming, 650500, China
| | - Weikun Zeng
- School of Medicine, Kunming University, Kunming, 650214, China
| | - Xiuling Ji
- Medical School, Kunming University of Science and Technology, Kunming, 650500, China.
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22
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Galdos MV, Soares JR, Lourenço KS, Harris P, Zeri M, Cunha-Zeri G, Vargas VP, Degaspari IAM, Cantarella H. Multi-experiment assessment of soil nitrous oxide emissions in sugarcane. Nutr Cycl Agroecosyst 2023; 127:375-392. [PMID: 38025204 PMCID: PMC10657304 DOI: 10.1007/s10705-023-10321-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Accepted: 10/11/2023] [Indexed: 12/01/2023]
Abstract
Soil nitrous oxide (N2O) fluxes comprise a significant part of the greenhouse gas emissions of agricultural products but are spatially and temporally variable, due to complex interactions between climate, soil and management variables. This study aimed to identify the main factors that affect N2O emissions under sugarcane, using a multi-site database from field experiments. Greenhouse gas fluxes, soil, climate, and management data were obtained from 13 field trials spanning the 2011-2017 period. We conducted exploratory, descriptive and inferential data analyses in experiments with varying fertiliser and stillage (vinasse) type and rate, and crop residue rates. The most relevant period of high N2O fluxes was the first 46 days after fertiliser application. The results indicate a strong positive correlation of cumulative N2O with nitrogen (N) fertiliser rate, soil fungi community (18S rRNA gene), soil ammonium (NH4+) and nitrate (NO3-); and a moderate negative correlation with amoA genes of ammonia-oxidising archaea (AOA) and soil organic matter content. The regression analysis revealed that easily routinely measured climate and management-related variables explained over 50% of the variation in cumulative N2O emissions, and that additional soil chemical and physical parameters improved the regression fit with an R2 = 0.65. Cross-wavelet analysis indicated significant correlations of N2O fluxes with rainfall and air temperature up to 64 days, associated with temporal lags of 2 to 4 days in some experiments, and presenting a good environmental control over fluxes in general. The nitrogen fertiliser mean emission factors ranged from 0.03 to 1.17% of N applied, with urea and ammonium nitrate plus vinasse producing high emissions, while ammonium sulphate, ammonium nitrate without vinasse, calcium nitrate, and mitigation alternatives (nitrification inhibitors and timing of vinasse application) producing low N2O-EFs. Measurements from multiple sites spanning several cropping seasons were useful for exploring the influence of environmental and management-related variables on soil N2O emissions in sugarcane production, providing support for global warming mitigation strategies, nitrogen management policies, and increased agricultural input efficiency. Supplementary Information The online version contains supplementary material available at 10.1007/s10705-023-10321-w.
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Affiliation(s)
- M. V. Galdos
- Rothamsted Research, Sustainable Soils and Crops, Harpenden, AL5 2JQ UK
| | - J. R. Soares
- School of Agricultural Engineering (FEAGRI), University of Campinas (UNICAMP), Av. Cândido Rondon, 501, Campinas, SP 13083-875 Brazil
| | - K. S. Lourenço
- Soils and Environmental Resources Centre, Agronomic Institute of Campinas (IAC), Av. Barao de Itapura 1481, Campinas, SP 13020-902 Brazil
| | - P. Harris
- Rothamsted Research, Net Zero and Resilient Farming, North Wyke, Okehampton, Devon, EX20 2SB UK
| | - M. Zeri
- National Center for Monitoring and Early Warning of Natural Disasters (Cemaden), São José dos Campos, Brazil
| | - G. Cunha-Zeri
- National Institute for Space Research (INPE), São José dos Campos, Brazil
| | - V. P. Vargas
- Soils and Environmental Resources Centre, Agronomic Institute of Campinas (IAC), Av. Barao de Itapura 1481, Campinas, SP 13020-902 Brazil
| | - I. A. M. Degaspari
- Soils and Environmental Resources Centre, Agronomic Institute of Campinas (IAC), Av. Barao de Itapura 1481, Campinas, SP 13020-902 Brazil
| | - H. Cantarella
- Soils and Environmental Resources Centre, Agronomic Institute of Campinas (IAC), Av. Barao de Itapura 1481, Campinas, SP 13020-902 Brazil
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23
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Huang F, Zhang Q, Wang L, Zhang C, Zhang Y. Are biodegradable mulch films a sustainable solution to microplastic mulch film pollution? A biogeochemical perspective. J Hazard Mater 2023; 459:132024. [PMID: 37572603 DOI: 10.1016/j.jhazmat.2023.132024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Revised: 06/27/2023] [Accepted: 07/07/2023] [Indexed: 08/14/2023]
Abstract
Mulch film residue contributes significantly to global plastic pollution, and consequently biodegradable mulch films (BDMs) are being adopted as a solution. BDMs decompose relatively quickly, but their complete biodegradation requires suitable conditions that are difficult to achieve in nature, causing biodegradable microplastics (bio-MPs) to be more likely to accumulate in soil than traditional microplastics (MPs). If BDMs are to be considered as a sustainable solution, long-term and in-depth studies to investigate the impact of bio-MPs on the biogeochemical processes are vital to agroecosystems operation and ecosystem services supply. Although bio-MP-derived carbon can potentially convert into biomass during decomposition, its contribution to soil carbon stocks is insignificant. Instead, given their biodegradability, bio-MPs can result in greater alterations of soil biodiversity and community composition. Their high carbon-nitrogen ratios may also significantly regulate various processes involved in the natural decomposition and transformation of soil organic matter, including the reduction of nutrient availability and increase in greenhouse gas emissions. Soil ecosystems are complex organic entities interconnected by disturbance-feedback mechanisms. Given the prevailing knowledge gaps regarding the impact of bio-MPs on soil biogeochemical cycles and ecosystem balance, this study emphasized the safety and sustainability assessment of bio-MPs and the prevailing comprehensive challenges.
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Affiliation(s)
- Fuxin Huang
- School of Resources and Environment, Northeast Agricultural University, Harbin 150030, PR China
| | - Qiyu Zhang
- School of Resources and Environment, Northeast Agricultural University, Harbin 150030, PR China
| | - Lei Wang
- School of Resources and Environment, Northeast Agricultural University, Harbin 150030, PR China
| | - Congyu Zhang
- School of Resources and Environment, Northeast Agricultural University, Harbin 150030, PR China
| | - Ying Zhang
- School of Resources and Environment, Northeast Agricultural University, Harbin 150030, PR China.
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24
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Feng Z, Xie X, Wu P, Chen M, Qin Y, Zhou Y, Zhu H, Yao Q. Phenylalanine-mediated changes in the soil bacterial community promote nitrogen cycling and plant growth. Microbiol Res 2023; 275:127447. [PMID: 37441843 DOI: 10.1016/j.micres.2023.127447] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Revised: 06/27/2023] [Accepted: 07/03/2023] [Indexed: 07/15/2023]
Abstract
Soil amino acids (AAs) are the most active components of soil N, which can be mineralized or absorbed by bacteria as N and C sources. We hypothesized that exogenous AAs could regulate the bacterial community and affect soil N cycling, and the effect sizes could vary depending on individual AAs. Here, we applied feather (keratin)-based compost rich in AAs to Poncirus trifoliata (L.) to evaluate the regulation of bacterial community by AAs; furthermore, we applied six individual AAs to test their effects. The compost significantly increased soil hydrolysable AA content, ammonia monooxygenase gene abundance, and plant growth and changed bacterial community structure. Redundancy analysis revealed that the effects of AAs on the bacterial community composition were greater than those of soil chemical properties, and phenylalanine (Phe) was the most effective among thirteen individual AAs. When applied individually, Phe caused the greatest increase in N cycling-related enzyme activity and plant growth and most significantly altered the bacterial community structure among the six exogenous AAs. Notably, Phe significantly increased the relative abundances of Burkholderia-Caballeronia-Paraburkholderia, Azospirillum, Cupriavidus, and Achromobacter, whose abundances were significantly positively correlated with plant biomass, and significantly reduced the relative abundances of Arachidicoccus, Pseudopedobacter, Sphingobacterium, and Paenibacillus, whose abundances were significantly negatively correlated with plant biomass. We demonstrate that soil AAs strongly shape the bacterial community. Particularly, Phe enhances N cycling and plant growth by increasing the potentially beneficial bacterial taxa and inhibiting the potentially harmful bacterial taxa, which needs further validation.
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Affiliation(s)
- Zengwei Feng
- College of Horticulture, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Guangdong Engineering Research Center for Litchi, South China Agricultural University, Guangzhou 510642, China; Key Laboratory of Agricultural Microbiomics and Precision Application (MARA), Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Key Laboratory of Agricultural Microbiome (MARA), State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China
| | - Xiaolin Xie
- Key Laboratory of Agricultural Microbiomics and Precision Application (MARA), Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Key Laboratory of Agricultural Microbiome (MARA), State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China; Guangdong BoWoTe Biotechnology Co. Ltd., Shaoguan 512026, China
| | - Peidong Wu
- College of Horticulture, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Guangdong Engineering Research Center for Litchi, South China Agricultural University, Guangzhou 510642, China
| | - Meng Chen
- College of Horticulture, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Guangdong Engineering Research Center for Litchi, South China Agricultural University, Guangzhou 510642, China; Guangdong BoWoTe Biotechnology Co. Ltd., Shaoguan 512026, China
| | - Yongqiang Qin
- College of Horticulture, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Guangdong Engineering Research Center for Litchi, South China Agricultural University, Guangzhou 510642, China
| | - Yang Zhou
- Key Laboratory of Agricultural Microbiomics and Precision Application (MARA), Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Key Laboratory of Agricultural Microbiome (MARA), State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China
| | - Honghui Zhu
- Key Laboratory of Agricultural Microbiomics and Precision Application (MARA), Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Key Laboratory of Agricultural Microbiome (MARA), State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, China.
| | - Qing Yao
- College of Horticulture, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Guangdong Engineering Research Center for Litchi, South China Agricultural University, Guangzhou 510642, China.
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25
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Zhou Z, Hua J, Xue J. Polyethylene microplastic and soil nitrogen dynamics: Unraveling the links between functional genes, microbial communities, and transformation processes. J Hazard Mater 2023; 458:131857. [PMID: 37354715 DOI: 10.1016/j.jhazmat.2023.131857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2023] [Revised: 06/03/2023] [Accepted: 06/13/2023] [Indexed: 06/26/2023]
Abstract
Microplastics (MPs) have emerged as pollutants of growing concern due to their potential threat to soil ecosystems. While some studies have investigated the effects of MPs on soil nitrogen content, the underlying physicochemical and microbial driving mechanisms still need to be explored. In this study, a six-month incubation experiment was conducted with varying polyethylene MP addition rates: CK (0%, mass ratio), MP0.5 (0.5%), MP1 (1%), MP2 (2%), MP4 (4%), and MP8 (8%). The experiment aimed to examine the effects of MPs on soil nitrogen content, physicochemical properties, nitrogen cycling-related genes, microorganisms, and gross nitrogen transformation rates. The results revealed no significant changes in soil total nitrogen and dissolved total nitrogen. However, dissolved organic nitrogen significantly decreased by 16.00-54.60% following MP addition, while ammonium (NH4+-N, 45.71-271.43%) and nitrate (NO3--N, 43.15-209.54%) nitrogen and microbial biomass nitrogen (46.02-123.70%) significantly increased. Soil pH, bulk density, and soil porosity decreased after MP addition, while soil carbon contents, water-stable macroaggregates, and redox potential increased. The soil microbial community structure changed significantly, and microbial diversity increased under MP treatment. MP addition significantly altered the abundance of soil nitrogen cycling functional genes. The relative abundance of nitrogen fixation and denitrification genes decreased with increasing MP addition rates, while organic degradation and synthesis genes increased. The soil nitrogen cycling functional microbial composition shifted dramatically with increased MP addition. Networks with high addition rates (MP2 +MP4 +MP8) exhibited more total nodes, total links, negative links, node degrees, and modules but shorter average path distances and lower modularity than those with low addition rates (CK +MP0.5 +MP1), reflecting increased network complexity induced by MPs. The gross ammonification rate, NH4+-N consumption and immobilization rates, and NO3--N immobilization rate increased, while the gross nitrification rate and net nitrification rate exhibited an initial increase followed by a decrease with increasing MP addition rates, peaking at MP2. Furthermore, redundancy analysis and structural equation modeling demonstrated that soil physicochemical properties significantly affected soil nitrogen cycling genes and microorganisms, ultimately altering nitrogen content. In conclusion, polyethylene MPs promoted soil nitrogen mineralization and transformation and changed the related functional microorganism community structure, exhibiting a noticeable dose-effect relationship. This study provides deeper insight into the effects of MPs on soil nitrogen cycling.
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Affiliation(s)
- Zhidong Zhou
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing 210014, China; Nanjing Botanical Garden Mem. Sun Yat-Sen, Nanjing 210014, China
| | - Jianfeng Hua
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing 210014, China; Nanjing Botanical Garden Mem. Sun Yat-Sen, Nanjing 210014, China.
| | - Jianhui Xue
- Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing 210014, China; Nanjing Botanical Garden Mem. Sun Yat-Sen, Nanjing 210014, China; College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China
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26
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Huang S, Guo T, Feng Z, Li B, Cai Y, Ouyang D, Gustave W, Ying C, Zhang H. Polyethylene and polyvinyl chloride microplastics promote soil nitrification and alter the composition of key nitrogen functional bacterial groups. J Hazard Mater 2023; 453:131391. [PMID: 37043864 DOI: 10.1016/j.jhazmat.2023.131391] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/01/2023] [Revised: 03/29/2023] [Accepted: 04/07/2023] [Indexed: 05/03/2023]
Abstract
Microplastics (MPs) contamination in soils seriously threatens agroecosystems globally. However, very few studies have been done on the effects of MPs on the soil nitrogen cycle and related functional microorganisms. To assess MP's impact on the soil nitrogen cycle and related functional bacteria, we carried out a one-month soil incubation experiment using typical acidic soil. The soil was amended with alfalfa meal and was spiked with 1% and 5% (mass percentage) of low-density polyethylene (LDPE) and polyvinyl chloride (PVC) MPs. Our results showed that both LDPE and PVC addition significantly increased soil nitrification rate and nitrate reductase activity, which could further promote soil denitrification. The relative abundance of diazotrophs, ammonium oxidizing, and denitrifying bacterial groups were significantly altered with MPs addition. Moreover, the MPs treatments greatly enhanced denitrifying bacteria richness. Redundancy analysis showed that nitrate reductase activity was the most significant factor affecting the soil functional bacterial community. Correlation analysis shows that Nitrosospira genus might be for the improvement of soil nitrification rate. Our results implied that MPs exposure could significantly affect the soil nitrogen cycling in farmland ecosystems by influencing essential nitrogen functional microorganisms and related enzymatic activities.
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Affiliation(s)
- Shunyin Huang
- Zhejiang Provincial Key laboratory of Soil Contamination Bioremediation, School of Environment and Resources, Zhejiang Agriculture and Forestry University, Hangzhou 311300, China
| | - Ting Guo
- Zhejiang Provincial Key laboratory of Soil Contamination Bioremediation, School of Environment and Resources, Zhejiang Agriculture and Forestry University, Hangzhou 311300, China
| | - Zhen Feng
- School of Advanced Agricultural Sciences, Zhejiang Agriculture and Forestry University, Hangzhou 311300, China
| | - Baochen Li
- Zhejiang Provincial Key laboratory of Soil Contamination Bioremediation, School of Environment and Resources, Zhejiang Agriculture and Forestry University, Hangzhou 311300, China
| | - Yimin Cai
- Zhejiang Provincial Key laboratory of Soil Contamination Bioremediation, School of Environment and Resources, Zhejiang Agriculture and Forestry University, Hangzhou 311300, China
| | - Da Ouyang
- Zhejiang Provincial Key laboratory of Soil Contamination Bioremediation, School of Environment and Resources, Zhejiang Agriculture and Forestry University, Hangzhou 311300, China
| | - Williamson Gustave
- School of Chemistry, Environmental & Life Sciences, University of The Bahamas, Nassau, New Providence, Bahamas
| | - Chengfei Ying
- School of Humanities and Law, Zhejiang Agriculture and Forestry University, Hangzhou 311300, China
| | - Haibo Zhang
- Zhejiang Provincial Key laboratory of Soil Contamination Bioremediation, School of Environment and Resources, Zhejiang Agriculture and Forestry University, Hangzhou 311300, China.
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Hu X, Gu H, Sun X, Wang Y, Liu J, Yu Z, Li Y, Jin J, Wang G. Distinct influence of conventional and biodegradable microplastics on microbe-driving nitrogen cycling processes in soils and plastispheres as evaluated by metagenomic analysis. J Hazard Mater 2023; 451:131097. [PMID: 36898310 DOI: 10.1016/j.jhazmat.2023.131097] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Revised: 02/23/2023] [Accepted: 02/25/2023] [Indexed: 06/18/2023]
Abstract
Plastic mulching is one of the large contributors to microplastic (MP) accumulation in agricultural landscapes. However, the effects of conventional (PE-MPs) and biodegradable MPs (BMPs) on microbial functional and genomic information encoding nitrogen (N) cycling have yet to be addressed. Here, a soil microcosmic experiment was conducted by adding PE-MPs and BMPs to a Mollisol at dosage of 5% (w/w) followed by incubation for 90 days. The soils and MPs were examined by metagenomics and genome binning methods. The results revealed that BMPs harbored rougher surfaces and induced stronger alterations in microbial functional and taxonomic profiles in the soil and plastisphere than PE-MPs. In comparison to their respective soils, the plastispheres of PE-MPs and BMPs stimulated the processes of N fixation, N degradation and assimilatory nitrate reduction (ANRA) and reduced the gene abundances encoding nitrification and denitrification, in which BMPs induced stronger influences than PE-MPs. Ramlibacter mainly drove the differences in N cycling processes between the soils containing two types of MPs and was further enriched in the BMP plastisphere. Three high-quality genomes were identified as Ramlibacter stains with higher abundances in the plastisphere of BMP than that of PE-MP. These Ramlibacter strains had the metabolic capacities of N fixation, N degradation, ANRA and ammonium transport, which were potentially attributed to their biosynthesis and the accumulation of soil NH4+-N. Taken together, our results highlight the genetic mechanisms of soil N bioavailability in the presence of biodegradable MPs, which have important implications for maintaining sustainable agriculture and controlling microplastic risk.
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Affiliation(s)
- Xiaojing Hu
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
| | - Haidong Gu
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
| | - Xiangxin Sun
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Yongbin Wang
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
| | - Junjie Liu
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
| | - Zhenhua Yu
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
| | - Yansheng Li
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
| | - Jian Jin
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China
| | - Guanghua Wang
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin 150081, China.
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Wang H, Wang J, Xiao M, Ge T, Gunina A, Jones DL. The fate of amino acid and peptide as affected by soil depth and fertilization regime in subtropical paddies. Sci Total Environ 2023; 889:164245. [PMID: 37211099 DOI: 10.1016/j.scitotenv.2023.164245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Revised: 04/26/2023] [Accepted: 05/14/2023] [Indexed: 05/23/2023]
Abstract
Amino acids and peptides are important regulators of ecosystem functioning due to their potential role as direct nutrient sources for plants and soil microbes. However, the turnover and driving factors of these compounds in agricultural soils remain poorly understood. This study aimed to reveal the short-term fate of 14C-labeled alanine and tri-alanine derived C under flooding conditions of the top (0-20 cm) and sub-horizons (20-40 cm) of subtropical paddy soils taken from four long-term (31 years since treatment) nitrogen (N) fertilization regimes (i.e., without fertilization, NPK, NPK with straw return (NPKS) or with manure (NPKM)). Amino acid mineralization was strongly affected by the N fertilization regime and soil depth, while peptide mineralization was only distinct between soil layers. The average half-life of amino acid and peptide in the topsoil was 8 h across all treatments, which was higher than previously reported in uplands. The microbial turnover of amino acid and peptide was 7-10 times slower in the subsoil than in the topsoil, with a half-life of about 2-3 days. The half-life of amino acid and peptide for the respired pool was strongly associated with soil physicochemical characteristics, the total biomass, and the structure of soil microbial communities. The N fertilization regime and soil depth affected the substrate uptake rate by microorganisms, with greater uptake observed in the NPKS and NPKM treatments and the topsoil. Microbial amino acid uptake was correlated with the biomass of total and individual microbial groups, whereas microbial peptide uptake was associated with the soil microbial community structure and physicochemical characteristics. This suggests that there are various pathways of amino acid and peptide use by microorganisms under flooding conditions. We conclude that microbial mineralization of amino acid and its peptide in paddy soils under flooding conditions is slower than in upland soils, and that microbial uptake of these substrates is related to soil abiotic factors and the biomass and structure of soil microbial community. These findings have important implications for understanding nutrient cycling and ecosystem functioning in agricultural soils.
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Affiliation(s)
- Hong Wang
- College of Resource and Environment, Anhui Science and Technology University, Chuzhou 233100, Anhui, China
| | - Jinyang Wang
- Key Laboratory of Green and Low-Carbon Agriculture in Southeastern China, Ministry of Agriculture and Rural Affairs, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China; Jiangsu Key Laboratory of Low Carbon Agriculture and GHGs Mitigation, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing 210095, Jiangsu, China.
| | - Mouliang Xiao
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Tida Ge
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Anna Gunina
- Department of Environmental Chemistry, University of Kassel, Witzenhausen 37213, Germany
| | - Davey L Jones
- School of Natural Sciences, Environment Centre Wales, Bangor University, Bangor LL57 2UW, Gwynedd, UK; Centre for Sustainable Farming Systems, Food Futures Institute, 90 South St, Murdoch, WA 6150, Australia
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29
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Yang J, Yu Q, Su W, Wang S, Wang X, Han Q, Qu J, Li H. Metagenomics reveals elevated temperature causes nitrogen accumulation mainly by inhibiting nitrate reduction process in polluted water. Sci Total Environ 2023; 882:163631. [PMID: 37086993 DOI: 10.1016/j.scitotenv.2023.163631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Revised: 04/17/2023] [Accepted: 04/17/2023] [Indexed: 05/03/2023]
Abstract
Determining the response of functional genes and microbiota involved in the nitrogen (N) cycle to warming in the face of global climate change is a hotpot topic. However, whether and how elevated temperature affects the N-cycle genes in polluted water remains unclear. Based on metagenomics, we investigated the responses of the whole N-cycling genes and their microbial communities to the temperature gradients (23, 26, 29, 32, and 35 °C) using animal cadavers as an N-pollution model. We found that the abundance of gene families involved in glutamate metabolism, assimilatory nitrate reduction to nitrite (ANRN), and denitrification pathways decreased with temperature. Moreover, warming reduced the diversity of N-cycling microbial communities. Ecological network analysis indicated that elevated temperature intensified the mutual competition of N-cycle genes. The partial least squares path model (PLS-PM) showed that warming directly suppressed most N-cycle pathways, especially glutamate metabolism, denitrification, and ANRN pathways. Corpse decay also indirectly inhibited N-cycling via regulating N content and microbial communities. Our results highlight warming leads to N accumulation by inhibiting the ANRN and denitrification pathways, which may jeopardize ecological environment security. Our study is expected to provide valuable insights into the complex N-cycle process and N-pollution in warmer aquatic ecosystems.
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Affiliation(s)
- Jiawei Yang
- School of Public Health, Lanzhou University, Lanzhou 730000, China
| | - Qiaoling Yu
- State Key Laboratory of Grassland Agro-ecosystems, Center for Grassland Microbiome, College of pastoral agriculture science and technology, Lanzhou University, Lanzhou 730000, China
| | - Wanghong Su
- School of Public Health, Lanzhou University, Lanzhou 730000, China
| | - Sijie Wang
- School of Public Health, Lanzhou University, Lanzhou 730000, China
| | - Xiaochen Wang
- School of Public Health, Lanzhou University, Lanzhou 730000, China
| | - Qian Han
- School of Public Health, Lanzhou University, Lanzhou 730000, China
| | - Jiapeng Qu
- Key laboratory of adaptation and evolution of plateau biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Qinghai 810008, China
| | - Huan Li
- School of Public Health, Lanzhou University, Lanzhou 730000, China; State Key Laboratory of Grassland Agro-ecosystems, Center for Grassland Microbiome, College of pastoral agriculture science and technology, Lanzhou University, Lanzhou 730000, China.
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30
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Huang Y, Fan Z, Zhao C, Chen G, Huang J, Zhou Z, Xiao Y. Evaluating the impacts of biochemical processes on nitrogen dynamics in a tide gate-controlled river flowing into the South China Sea. Sci Total Environ 2023; 881:163363. [PMID: 37044343 DOI: 10.1016/j.scitotenv.2023.163363] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Revised: 03/24/2023] [Accepted: 04/03/2023] [Indexed: 04/14/2023]
Abstract
This study aimed to evaluate the nitrogen (N) dynamics in Lijiang River, a tide gate-controlled river flowing into South China Sea, and to quantify the biochemical processes affecting nitrate fate and transport during the closed-tide gate period. The continuous on-line water monitoring indicates a chemostatic NH4+-N pattern with respect to variable discharges in the upstream section. The survey via daily grab water sampling from July to December 2020 at four equidistant locations in the lower stretch showed that a gradual increase in NO3--N and decrease in NH4+-N concentrations occurred along the river from upstream to downstream sections and with the time from September to December (the closed-tide gate period). The mean difference between nitrification and denitrification rate peaked at 0.43 mg L-1 d-1 in October in the upper section and gradually reduced to -0.26 mg L-1 d-1 in December in the middle section, indicating the increased advantage of denitrification over nitrification with time. A gradual increase in the mean NO3--N assimilatory uptake rate with time and a decrease from upstream to downstream were also observed. These results show that the closed-tide gate promoted N biotransformation in Laingian River and significant N removal was achieved through coupled nitrification-denitrification.
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Affiliation(s)
- Yinbin Huang
- Department of Civil and Environmental Engineering, College of Engineering, Shantou University, Shantou, Guangdong 515063, China; National Key Laboratory of Water Environmental Simulation and Pollution Control, South China Institute of Environmental Sciences, Ministry of Ecology and Environment, Guangzhou 510530, China
| | - Zhongya Fan
- National Key Laboratory of Water Environmental Simulation and Pollution Control, South China Institute of Environmental Sciences, Ministry of Ecology and Environment, Guangzhou 510530, China.
| | - Changjin Zhao
- National Key Laboratory of Water Environmental Simulation and Pollution Control, South China Institute of Environmental Sciences, Ministry of Ecology and Environment, Guangzhou 510530, China
| | - Gang Chen
- National Key Laboratory of Water Environmental Simulation and Pollution Control, South China Institute of Environmental Sciences, Ministry of Ecology and Environment, Guangzhou 510530, China
| | - Ju Huang
- National Key Laboratory of Water Environmental Simulation and Pollution Control, South China Institute of Environmental Sciences, Ministry of Ecology and Environment, Guangzhou 510530, China
| | - Zhongbo Zhou
- College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Yeyuan Xiao
- Department of Civil and Environmental Engineering, College of Engineering, Shantou University, Shantou, Guangdong 515063, China.
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31
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Morris N, Alldred M, Zarnoch C, Alter SE. Estuarine Sediment Microbiomes from a Chronosequence of Restored Urban Salt Marshes. Microb Ecol 2023; 85:916-930. [PMID: 36826588 DOI: 10.1007/s00248-023-02193-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2023] [Accepted: 02/09/2023] [Indexed: 05/04/2023]
Abstract
Salt marshes play an important role in the global nutrient cycle. The sediments in these systems harbor diverse and complex bacterial communities possessing metabolic capacities that provide ecosystem services such as nutrient cycling and removal. On the East Coast of the USA, salt marshes have been experiencing degradation due to anthropogenic stressors. Salt marsh islands within Jamaica Bay, New York City (USA), are surrounded by a large highly urbanized watershed and have declined in area. Restoration efforts have been enacted to reduce further loss, but little is known about how microbial communities develop following restoration activities, or how processes such as nitrogen cycling are impacted. Sediment samples were collected at two sampling depths from five salt marsh islands to characterize the bacterial communities found in marsh sediment including a post-restoration chronosequence of 3-12 years. We used 16s rRNA amplicon sequencing to define alpha and beta diversity, taxonomic composition, and predicted metabolic profile of each sediment sample. We found significant differences in alpha diversity between sampling depths, and significant differences in beta diversity, taxonomic composition, and predicted metabolic capacity among the five sampling locations. The youngest restored site and the degraded natural sampling site exhibited the most distinct communities among the five sites. Our findings suggest that while the salt marsh islands are located in close proximity to each other, they harbor distinct bacterial communities that can be correlated with post-restoration age, marsh health, and other environmental factors such as availability of organic carbon. IMPORTANCE: Salt marshes play a critical role in the global nutrient cycle due to sediment bacteria and their metabolic capacities. Many East Coast salt marshes have experienced significant degradation over recent decades, thought largely to be due to anthropogenic stressors such as nitrogen loading, urban development, and sea-level rise. Salt marsh islands in Jamaica Bay (Queens/Brooklyn NY) are exposed to high water column nitrogen due to wastewater effluent. Several receding marsh islands have been subjected to restoration efforts to mitigate this loss. Little is known about the effect marsh restoration has on bacterial communities, their metabolic capacity, or how they develop post-restoration. Here, we describe the bacterial communities found in marsh islands including a post-restoration chronosequence of 3-12 years and one degraded marsh island that remains unrestored. We found distinct communities at marsh sites, despite their geographic proximity. Differences in diversity and community composition were consistent with changes in organic carbon availability that occur during marsh development, and may result in differences in ecosystem function among sites.
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Affiliation(s)
- Nathan Morris
- The Graduate Center City University of New York, New York, NY, USA
- York College City University of New York, Jamaica, NY, USA
| | - Mary Alldred
- Center for Earth and Environmental Science State University of New York (SUNY), Plattsburgh, NY, USA
| | - Chester Zarnoch
- The Graduate Center City University of New York, New York, NY, USA
- Baruch College City University of New York, New York, NY, USA
| | - S Elizabeth Alter
- The Graduate Center City University of New York, New York, NY, USA.
- California State University-Monterey Bay, Seaside, CA, USA.
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32
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Yang R, Zhou S, Zhang L, Qin C. Pronounced temporal changes in soil microbial community and nitrogen transformation caused by benzalkonium chloride. J Environ Sci (China) 2023; 126:827-835. [PMID: 36503808 PMCID: PMC9553405 DOI: 10.1016/j.jes.2022.04.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 04/02/2022] [Accepted: 04/05/2022] [Indexed: 05/16/2023]
Abstract
As one typical cationic disinfectant, quaternary ammonium compounds (QACs) were approved for surface disinfection in the coronavirus disease 2019 pandemic and then unintentionally or intentionally released into the surrounding environment. Concerningly, it is still unclear how the soil microbial community succession happens and the nitrogen (N) cycling processes alter when exposed to QACs. In this study, one common QAC (benzalkonium chloride (BAC) was selected as the target contaminant, and its effects on the temporal changes in soil microbial community structure and nitrogen transformation processes were determined by qPCR and 16S rRNA sequencing-based methods. The results showed that the aerobic microbial degradation of BAC in the two different soils followed first-order kinetics with a half-life (4.92 vs. 17.33 days) highly dependent on the properties of the soil. BAC activated the abundance of N fixation gene (nifH) and nitrification genes (AOA and AOB) in the soil and inhibited that of denitrification gene (narG). BAC exposure resulted in the decrease of the alpha diversity of soil microbial community and the enrichment of Crenarchaeota and Proteobacteria. This study demonstrates that BAC degradation is accompanied by changes in soil microbial community structure and N transformation capacity.
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Affiliation(s)
- Rui Yang
- State Key Laboratory of Coal Mine Disaster Dynamics and Control, Chongqing University, Chongqing 400044, China; Key Laboratory of Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China
| | - Shaohong Zhou
- State Key Laboratory of Coal Mine Disaster Dynamics and Control, Chongqing University, Chongqing 400044, China; Key Laboratory of Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China
| | - Lilan Zhang
- State Key Laboratory of Coal Mine Disaster Dynamics and Control, Chongqing University, Chongqing 400044, China; Key Laboratory of Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China.
| | - Cunli Qin
- State Key Laboratory of Coal Mine Disaster Dynamics and Control, Chongqing University, Chongqing 400044, China; Key Laboratory of Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing 400045, China
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33
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Gu Q, Ma J, Zhang J, Guo W, Wu H, Sun M, Wang J, Wei X, Zhang Y, Chen M, Xue L, Ding Y, Wu Q. Nitrogen-metabolising microorganism analysis in rapid sand filters from drinking water treatment plant. Environ Sci Pollut Res Int 2023; 30:29458-29475. [PMID: 36417065 DOI: 10.1007/s11356-022-23963-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2021] [Accepted: 10/29/2022] [Indexed: 06/16/2023]
Abstract
Sand filters (SFs) are common treatment processes for nitrogen pollutant removal in drinking water treatment plants (DWTPs). However, the mechanisms on the nitrogen-cycling role of SFs are still unclear. In this study, 16S rRNA gene amplicon sequencing was used to characterise the diversity and composition of the bacterial community in SFs from DWTPs. Additionally, metagenomics approach was used to determine the functional microorganisms involved in nitrogen cycle in SFs. Our results showed that Pseudomonadota, Acidobacteria, Nitrospirae and Chloroflexi dominated in SFs. Subsequently, 85 high-quality metagenome-assembled genomes (MAGs) were retrieved from metagenome datasets of selected SFs involving nitrification, assimilatory nitrogen reduction, denitrification and anaerobic ammonia oxidation (anammox) processes. Read mapping to reference genomes of Nitrospira and the phylogenetic tree of the ammonia monooxygenase subunit A gene, amoA, suggested that Nitrospira is abundantly found in SFs. Furthermore, according to their genetic content, a nitrogen metabolic model in SFs was proposed using representative MAGs and pure culture isolate. Quantitative real-time polymerase chain reaction (qPCR) showed that ammonia-oxidising bacteria (AOB) and archaea (AOA), and complete ammonia oxidisers (comammox) were ubiquitous in the SFs, with the abundance of comammox being higher than that of AOA and AOB. Moreover, we identified a bacterial strain with a high NO3-N removal rate as Pseudomonas sp. DW-5, which could be applied in the bioremediation of micro-polluted drinking water sources. Our study provides insights into functional nitrogen-metabolising microbes in SFs of DWTPs.
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Affiliation(s)
- Qihui Gu
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, People's Republic of China
| | - Jun Ma
- School of Food and Biological Engineering, Shaanxi University of Science and Technology, Xi'an, 710021, People's Republic of China
| | - Jumei Zhang
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, People's Republic of China
| | - Weipeng Guo
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, People's Republic of China
| | - Huiqing Wu
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, People's Republic of China
| | - Ming Sun
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, People's Republic of China
| | - Juan Wang
- College of Food Science, South China Agricultural University, Guangzhou, 510640, People's Republic of China
| | - Xianhu Wei
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, People's Republic of China
| | - Youxiong Zhang
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, People's Republic of China
| | - Montong Chen
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, People's Republic of China
| | - Liang Xue
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, People's Republic of China
| | - Yu Ding
- Department of Food Science & Technology, Institute of Food Safety and Nutrition, Jinan University, Huangpu Ave. 601, Guangzhou, 510632, People's Republic of China
| | - Qingping Wu
- Guangdong Provincial Key Laboratory of Microbial Safety and Health, State Key Laboratory of Applied Microbiology Southern China, Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou, 510070, People's Republic of China.
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Liu Y, Xu F, Ding L, Zhang G, Bai B, Han Y, Xiao L, Song Y, Li Y, Wan S, Li G. Microplastics reduce nitrogen uptake in peanut plants by damaging root cells and impairing soil nitrogen cycling. J Hazard Mater 2023; 443:130384. [PMID: 36444071 DOI: 10.1016/j.jhazmat.2022.130384] [Citation(s) in RCA: 25] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Revised: 10/28/2022] [Accepted: 11/09/2022] [Indexed: 06/16/2023]
Abstract
Microplastic (MP) pollution severely impairs the sustainable development of modern agriculture. However, the mechanisms underlying the effects of MP contaminants on nutrient cycles in agroecosystems are poorly understood. In this study, we examined the impacts of two types of MPs, polypropylene (PP) and rubber crumb (RC), on nitrogen (N) transformation and N cycling in soil-peanut system. High concentrations of PP (1% w/w) and RC (1% w/w) inhibited vegetative growth and N uptake in peanut plants by damaging root cells and disturbing soil N cycling. These MPs damaged the plasma membranes of root cells and caused oxidative stress, as evidenced by the decreased number of xylem vessels, which in turn inhibited N uptake by roots. Integrated metagenomic and metabolomic analyses revealed that the differential soil metabolite levels in response to MP treatment affected the microbial community structure in the rhizosphere and the expression of key N cycling-related genes, resulting in altered N transformation and the decreased availability of N in rhizosphere soil. These findings provide the first evidence of the effects of MPs on N uptake in peanut plants and shed light on the importance of rational management of MPs for crop growth and yield in agroecosystems.
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Affiliation(s)
- Yiyang Liu
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Fangji Xu
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Liping Ding
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Guanchu Zhang
- Shandong Peanut Research Institute, No.126, Wannianquan Road, Licang District, Qingdao 266100, China
| | - Bo Bai
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Yan Han
- Shandong Academy of Grape, Jinan 250199, China
| | - Lina Xiao
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Yan Song
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Ying Li
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China
| | - Shubo Wan
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China.
| | - Guowei Li
- Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Jinan 250100, China.
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35
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Xu J, Bao S, Xiang D, Xue L, Tang W, Fang T. Effects of silver nanoparticles on denitrification and anammox in sediments of hypertrophic and mesotrophic lakes. Sci Total Environ 2023; 858:159933. [PMID: 36343817 DOI: 10.1016/j.scitotenv.2022.159933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2022] [Revised: 10/29/2022] [Accepted: 10/30/2022] [Indexed: 06/16/2023]
Abstract
The abundant production and wide usage of silver nanoparticles (Ag NPs) inevitably lead to their release into aquatic ecosystems. However, it is still unclear about how Ag NPs influence denitrification and anammox (DA) in freshwater sediments. To address this, the sediments of hypertrophic and mesotrophic lakes were exposed to 0.5 and 50 mg/L Ag NPs under anaerobic conditions for 7 days to explore the effects of Ag NPs on environmental variables, including redox potential (Eh), pH, organic matter (OM) and acid volatile sulfide (AVS), and the resulting influence on DA. Experimental results indicated that NO3--N and NH4+-N levels were increased by the low (p > 0.05) and high doses of Ag NPs (p < 0.05) in comparison with the non-Ag control, revealing an inhibitive impact on DA. The level of total nitrogen (TN) was notably increased by the low and high doses of Ag NPs (p < 0.05), perhaps due to inhibited enzyme activity and corresponding encoding gene abundance, which were related to generating gaseous nitrogen such as N2O and N2. In addition, environmental factor Eh was significantly raised by Ag NPs (p < 0.05), further inhibiting DA. Moreover, the quantitative analysis unveiled that denitrifying and anammox bacteria in hypertrophic lakes evinced a stronger resistance to Ag NPs toxicity than those in mesotrophic lakes. Overall, our study revealed that short-term exposure to Ag NPs could inhibit DA in sediments. These findings provide an understanding enabling evaluation and prediction of the environmental risks of Ag NPs in freshwater lakes.
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Affiliation(s)
- Jian Xu
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shaopan Bao
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Dongfang Xiang
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Lu Xue
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Wei Tang
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Tao Fang
- Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; University of Chinese Academy of Sciences, Beijing 100049, China.
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36
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Zhang Y, Wang G, Liu H, Dai X. Application of spray-dried erythromycin fermentation residue as a soil amendment: antibiotic resistance genes, nitrogen cycling, and microbial community structure. Environ Sci Pollut Res Int 2023; 30:20547-20557. [PMID: 36255578 DOI: 10.1007/s11356-022-23361-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Accepted: 09/26/2022] [Indexed: 06/16/2023]
Abstract
Erythromycin fermentation residue (EFR) after spray drying could be reused as a soil amendment. However, the effects of spray-dried EFR on antibiotic resistance genes (ARGs), nitrogen cycling, and microbial community structure in soil are rarely reported. In this study, a pot experiment was conducted by adding spray-dried EFR to soil. For the application of 1.0% spray-dried EFR, the residual erythromycin (ERY) could be rapidly removed with the half-life of 22.2 d; the total relative abundance of ARGs increased at first, but decreased to the initial level of the control group in the end; genes related to ammonium assimilation (glnA, gltB, gltD), ammonification (gdhA, gudB, cynT, cynS, ncd2), denitrification (narI, narG, narH), assimilatory nitrate reduction (nirA, nasA), and dissimilatory nitrate reduction (nirD) were enriched; soil microbial community structure presented temporary variation. Network analysis showed significant negative correlations between ARGs and nitrogen cycling genes. The addition of 6.0% spray-dried EFR resulted in the amplification of ARGs and inhibition of nitrogen cycling. This work provides new insights into the effects of spray-dried EFR on ARGs, nitrogen cycling, and microbial community structure within the fertilized soil.
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Affiliation(s)
- Yanxiang Zhang
- School of Environmental and Material Engineering, Yantai University, Yantai, 264005, Shandong, China
| | - Gang Wang
- School of Environmental and Material Engineering, Yantai University, Yantai, 264005, Shandong, China
| | - Huiling Liu
- School of Environmental Science and Engineering, Tongji University, Shanghai, 200092, China.
| | - Xiaohu Dai
- School of Environmental Science and Engineering, Tongji University, Shanghai, 200092, China
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Marshall AJ, Phillips L, Longmore A, Hayden HL, Heidelberg KB, Tang C, Mele P. Temporal profiling resolves the drivers of microbial nitrogen cycling variability in coastal sediments. Sci Total Environ 2023; 856:159057. [PMID: 36174701 DOI: 10.1016/j.scitotenv.2022.159057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Revised: 09/21/2022] [Accepted: 09/22/2022] [Indexed: 06/16/2023]
Abstract
Here we describe the potential for sediment microbial nitrogen-cycling gene (DNA) and activity (RNA) abundances to spatially resolve coastal areas impacted by seasonal variability in external nutrient inputs. Three sites were chosen within a nitrogen-limited embayment, Port Phillip Bay (PPB), Australia that reflect variability in both proximity to external nutrient inputs and the dominant form of available nitrogen. At three sediment depths (0-1; 1-5; 5-10 cm) across a 2 year study key genes involved in nitrification (archaeal amoA and bacterial β-amoA), nitrite reduction (clade I nirS and cluster I nirK, archaeal nirK-a), anaerobic oxidation of ammonium (anammox 16S rRNA phylogenetic marker) and nitrogen fixation (nifH) were quantified. Sediments impacted by a dominance of organic nitrogen inputs were characterised at all time-points and to sediment depths of 10 cm by the highest transcript abundances of archaeal amoA and archaeal nirk-a. Proximity to a dominance of external nitrate inputs was associated with the highest transcript abundances of nirS which temporally co-varied with seasonal changes in sediment nitrate. Sediments isolated from external inputs displayed the greatest depth-specific decrease in quantifiable transcript abundances. In these isolated sediments bacterial β-amoA transcripts were temporally associated with increased sediment ammonium levels. Across this nitrogen limited system variability in the abundance of bacterial β-amoA, archaeal amoA, archaeal nirk-a or nirS transcripts from the sediment surface (0-1 and 5 cm) demonstrated a capacity to improve our ability to monitor coastal zones impacted by anthropogenic nitrogen inputs. Specifically, the spatial detection sensitivity of bacterial β-amoA transcripts could be developed as a metric to determine spatiotemporal impacts of large external loading events. This temporal study demonstrates a capacity for microbial activity metrics to facilitate coastal management strategies through greater spatial resolution of areas impacted by external nutrient inputs.
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Affiliation(s)
- Alexis J Marshall
- La Trobe University, AgriBio Centre for AgriBiosciences, 5 Ring Road Bundoora, Australia; Department of Jobs, Precincts and Regions, AgriBio, Centre for AgriBiosciences, 5 Ring Road Bundoora, Australia.
| | - Lori Phillips
- Department of Jobs, Precincts and Regions, AgriBio, Centre for AgriBiosciences, 5 Ring Road Bundoora, Australia
| | - Andrew Longmore
- Centre for Aquatic Pollution Identification and Management, Melbourne University, Parkville, Australia
| | - Helen L Hayden
- Department of Jobs, Precincts and Regions, AgriBio, Centre for AgriBiosciences, 5 Ring Road Bundoora, Australia
| | - Karla B Heidelberg
- The University of Southern California, Department of Biology, Los Angeles, CA 90089, United States of America
| | - Caixian Tang
- La Trobe University, AgriBio Centre for AgriBiosciences, 5 Ring Road Bundoora, Australia
| | - Pauline Mele
- La Trobe University, AgriBio Centre for AgriBiosciences, 5 Ring Road Bundoora, Australia; Department of Jobs, Precincts and Regions, AgriBio, Centre for AgriBiosciences, 5 Ring Road Bundoora, Australia
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38
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Moghadam SV, Jafarzadeh A, Matta A, Dessouky S, Hutchinson J, Kapoor V. Evaluation of nitrogen removal, functional gene abundance and microbial community structure in a stormwater detention basin. J Environ Manage 2023; 325:116669. [PMID: 36335700 DOI: 10.1016/j.jenvman.2022.116669] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Revised: 10/24/2022] [Accepted: 10/29/2022] [Indexed: 06/16/2023]
Abstract
Stormwater control measures such as detention basins are used to mitigate the negative effects of urban stormwater resulting from watershed development. In this study, the performance of a detention basin in mitigating nitrogen pollution was examined and the abundance of N-cycling genes (amoA, nirK, nosZ, hzsB and Ntsp-amoA) present in the soil media of the basin was measured using quantitative PCR. Results showed a net export of nitrogen from the basin, however, differences between in- and outflow concentrations were not significant. Furthermore, the quantitative PCR showed that nirK (denitrification gene) was more abundant in the winter season, whereas amoA (nitrification gene) was more abundant in the summer season. The abundance of nirK, Ntsp-amoA and hzsB genes also varied with the sampling depth of soil and based on 16S rRNA gene sequencing of soil samples, Actinobacteria and Proteobacteria were the most dominant phyla. Species diversity appeared higher in summer, while the top and bottom layer of soil clustered separately based on the bacterial community structure. These results underline the importance of understanding nitrogen dynamics and microbial processes within stormwater control measures to enhance their design and performance.
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Affiliation(s)
- Sina V Moghadam
- School of Civil & Environmental Engineering, And Construction Management, University of Texas at San Antonio, San Antonio, TX, 78249, USA
| | - Arash Jafarzadeh
- School of Civil & Environmental Engineering, And Construction Management, University of Texas at San Antonio, San Antonio, TX, 78249, USA
| | - Akanksha Matta
- School of Civil & Environmental Engineering, And Construction Management, University of Texas at San Antonio, San Antonio, TX, 78249, USA; Department of Chemistry, University of Texas at San Antonio, San Antonio, TX, 78249, USA
| | - Samer Dessouky
- School of Civil & Environmental Engineering, And Construction Management, University of Texas at San Antonio, San Antonio, TX, 78249, USA
| | - Jeffrey Hutchinson
- Department of Integrative Biology, University of Texas at San Antonio, San Antonio, TX, 78249, USA
| | - Vikram Kapoor
- School of Civil & Environmental Engineering, And Construction Management, University of Texas at San Antonio, San Antonio, TX, 78249, USA.
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Li C, Wei Z, Yang P, Shan J, Yan X. Conversion from rice fields to vegetable fields alters product stoichiometry of denitrification and increases N 2O emission. Environ Res 2022; 215:114279. [PMID: 36126691 DOI: 10.1016/j.envres.2022.114279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 08/30/2022] [Accepted: 09/02/2022] [Indexed: 06/15/2023]
Abstract
Information about effects of conversion from rice fields to vegetable fields on denitrification process is still limited. In this study, denitrification rate and product ratio (i.e., N2O/(N2O + N2) ratio) were investigated by soil-core incubation based N2/Ar technique in one rice paddy field (RP) and two vegetable fields (VF4 and VF7, 4 and 7 years vegetable cultivating after conversion from rice fields, respectively). Genes related to denitrification and bacterial community composition were quantified to investigate the microbial mechanisms behind the effects of land-use conversion. The results showed that conversion of rice fields to vegetable fields did not significantly change denitrification rate although the abundance of denitrification related genes was significantly reduced by 79.22%-99.84% in the vegetable soils. Whereas, compared with the RP soil, N2O emission rate was significantly (P < 0.05) increased by 53.5 and 1.6 times in the VF4 and VF7 soils, respectively. Correspondingly, the N2O/(N2O + N2) ratio increased from 0.18% (RP soil) to 5.65% and 0.65% in the VF4 and VF7 soils, respectively. These changes were mainly attributed to the lower pH, higher nitrate content, and the altered bacterial community composition in the vegetable soils. Overall, our results showed that conversion of rice fields to vegetable fields increased the N2O emission rate and altered the product ratio of denitrification. This may increase the contribution of land-use conversion to global warming and stratospheric ozone depletion.
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Affiliation(s)
- Chenglin Li
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China; Changshu National Agro-Ecosystem Observation and Research Station, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Zhijun Wei
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; University of Chinese Academy of Sciences, Beijing, 100049, China; Changshu National Agro-Ecosystem Observation and Research Station, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Pinpin Yang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Jun Shan
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; Changshu National Agro-Ecosystem Observation and Research Station, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China.
| | - Xiaoyuan Yan
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China; Changshu National Agro-Ecosystem Observation and Research Station, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, 210008, China
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40
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Liu M, He Y, Cao L, Zhi Y, He X, Li T, Wei Y, Yuan X, Liu B, He Q, Li H, Miao X. Fate of dissolved inorganic nitrogen in turbulent rivers: The critical role of dissolved oxygen levels. Environ Pollut 2022; 312:120074. [PMID: 36058314 DOI: 10.1016/j.envpol.2022.120074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2022] [Revised: 08/16/2022] [Accepted: 08/27/2022] [Indexed: 06/15/2023]
Abstract
Dissolved inorganic nitrogen (DIN) is considered the main factor that induces eutrophication in water, and is readily influenced by hydrodynamic activities. In this study, a 4-year field investigation of nitrogen dynamics in a turbulent river was conducted, and a laboratory study was performed in the approximately homogeneous turbulence simulation system to investigate potential mechanisms involved in DIN transformation under turbulence. The field investigation revealed that, contrary to NO-3 dynamics, the NH+4 concentrations in water were lower in flood seasons than in drought seasons. Further laboratory results demonstrated that limitation of dissolved oxygen (DO) caused inactive nitrification and active denitrification in static river sediment. In contrast, the increased DO levels in turbulent river intensified the mineralization of organic nitrogen in sediment; moreover, ammonification and nitrification were activated, while denitrification was first activated and then depressed. Turbulence therefore decreased NH+4 and NO-2 concentrations, but increased NO-3 and total DIN concentrations in the overlying water, causing the total DIN to increase from 0.4 mg/L to maximum of 1.0 and 1.7 mg/L at low and high turbulence, respectively. The DIN was maintained at 0.7 and 1.0 mg/L after the 30-day incubation under low and high turbulence intensities (ε) of 3.4 × 10-4 and 7.4 × 10-2 m2/s3, respectively. These results highlight the critical role of DO in DIN budgets under hydrodynamic turbulence, and provide new insights into the DIN transport and transformation mechanisms in turbulent rivers.
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Affiliation(s)
- Ming Liu
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing, 400044, China
| | - Yixin He
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing, 400044, China
| | - Li Cao
- Laboratory of Evolutionary Physiology and Behavior, Chongqing Key Laboratory of Animal Biology, Chongqing Normal University, Chongqing, 401331, China
| | - Yue Zhi
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing, 400044, China
| | - Xianjin He
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing, 400044, China
| | - Tao Li
- Changjiang Chongqing Waterway Engineering Bureau, Chongqing, 400011, China
| | - Yanyan Wei
- Cultivation Base of Guangxi Key Laboratory for Agro-Environment and Agro-Products Safety, College of Agriculture, Guangxi University, Nanning, 530004, China
| | - Xiaobing Yuan
- The Second Construction Engineering Co., Ltd. of the Third Bureau of China Construction Co., Ltd., Wuhan, 430064, China; China Construction Third Bureau Green Industry Investment Co. Ltd., Wuhan, 430074, China
| | - Bingsheng Liu
- The Second Construction Engineering Co., Ltd. of the Third Bureau of China Construction Co., Ltd., Wuhan, 430064, China; China Construction Third Bureau Green Industry Investment Co. Ltd., Wuhan, 430074, China
| | - Qiang He
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing, 400044, China
| | - Hong Li
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing, 400044, China
| | - Xiaojun Miao
- Key Laboratory of Eco-Environment of Three Gorges Region, Ministry of Education, Chongqing University, Chongqing, 400044, China.
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Pensky J, Fisher AT, Gorski G, Schrad N, Dailey H, Beganskas S, Saltikov C. Enhanced cycling of nitrogen and metals during rapid infiltration: Implications for managed recharge. Sci Total Environ 2022; 838:156439. [PMID: 35660593 DOI: 10.1016/j.scitotenv.2022.156439] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Revised: 05/12/2022] [Accepted: 05/30/2022] [Indexed: 06/15/2023]
Abstract
We present results from a series of plot-scale field experiments to quantify physical infiltration dynamics and the influence of adding a carbon-rich, permeable reactive barrier (PRB) for the cycling of nitrogen and associated trace metals during rapid infiltration for managed aquifer recharge (MAR). Recent studies suggest that adding a bio-available carbon source to soils can enhance denitrification rates and associated N load reduction during moderate-to-rapid infiltration (≤1 m/day). We examined the potential for N removal during faster infiltration (>1 m/day), through coarse and carbon-poor soils, and how adding a carbon-rich PRB (wood chips) affects subsurface redox conditions and trace metal mobilization. During rapid infiltration, plots amended with a carbon-rich PRB generally demonstrated modest increases in subsurface loads of dissolved organic carbon, nitrite, manganese and iron, decreases in loads of nitrate and ammonium, and variable changes in arsenic. These trends differed considerably from those seen during infiltration through native soil without a carbon-rich PRB. Use of a carbon-rich soil amendment increased the fraction of dissolved N species that was removed at equivalent inflowing N loads. There is evidence that N removal took place primarily via denitrification. Shifts in microbial ecology following infiltration in all of the plots included increases in the relative abundances of microbes in the families Comamonadaceae, Pseudomonadaceae, Methylophilaceae, Rhodocyclaceae and Sphingomonadaceae, all of which contain genera capable of carrying out denitrification. These results, in combination with studies that have tested other soil types, flow rates, and system scales, show how water quality can be improved during infiltration for managed recharge, even during rapid infiltration, with a carbon-rich soil amendment.
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Affiliation(s)
- Jennifer Pensky
- Department of Earth and Planetary Sciences, University of California Santa Cruz, Santa Cruz, CA 95064, United States.
| | - Andrew T Fisher
- Department of Earth and Planetary Sciences, University of California Santa Cruz, Santa Cruz, CA 95064, United States
| | - Galen Gorski
- Department of Earth and Planetary Sciences, University of California Santa Cruz, Santa Cruz, CA 95064, United States
| | - Nicole Schrad
- Department of Microbiology and Environmental Toxicology, University of California, Santa Cruz, CA 95064, United States
| | - Hannah Dailey
- Department of Earth and Planetary Sciences, University of California Santa Cruz, Santa Cruz, CA 95064, United States
| | - Sarah Beganskas
- Water Resource Management, Delaware River Basin Commission, West Trenton, NJ 08628, United States
| | - Chad Saltikov
- Department of Microbiology and Environmental Toxicology, University of California, Santa Cruz, CA 95064, United States
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42
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Zheng X, Oba BT, Wang H, Shen C, Zhao R, Zhao D, Ding H. Organo-mineral complexes alter bacterial composition and induce carbon and nitrogen cycling in the rhizosphere. Sci Total Environ 2022; 836:155671. [PMID: 35525342 DOI: 10.1016/j.scitotenv.2022.155671] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Revised: 03/19/2022] [Accepted: 04/29/2022] [Indexed: 06/14/2023]
Abstract
It is widely thought that organo-mineral complexes (OMCs) stabilize organic matter via mineral adsorption. Recent studies have demonstrated that root exudates can activate OMCs, but the influence of OMCs on plant rhizosphere, which is among the most active areas for microbes, has not been thoroughly researched. In this study, a pot experiment using Brassica napus was conducted to investigate the effects of OMCs on plant rhizosphere. The result showed that OMC addition significantly promoted the growth of B. napus compared to the prevalent fertilization (PF, chemical fertilizer + chicken compost) treatment. Specifically, OMC addition increased the relative abundance (RA) of nitrogen-fixing bacteria and the bacterial α-diversity, and the operational taxonomic unit (OTU) group with RA > 0.5% in the OMC-treated rhizosphere was the result of a deterministic assembly process with homogeneous selection. Gene abundance related to nitrogen cycling and the soil chemical analysis demonstrated that the OMC-altered bacterial community induced nitrogen fixation and converted nitrate to ammonium. The upregulated carbon sequestration pathway genes and the increased soil microbial biomass carbon (23.68%) demonstrated that the bacterial-induced carbon storage in the rhizosphere was activated. This study shows that the addition of OMCs can influence the biogeochemical carbon and nitrogen cycling via regulating microorganisms in the rhizosphere. The findings provide fresh insights into the effects of OMCs on the biogeochemical cycling of important elements and suggest a promising strategy for improving soil productivity.
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Affiliation(s)
- Xuehao Zheng
- School of Environmental Science and Engineering, Tianjin University, Weijin Road, Tianjin 300072, China
| | - Belay Tafa Oba
- School of Environmental Science and Engineering, Tianjin University, Weijin Road, Tianjin 300072, China; College of Natural Science, Arba Minch University, Arba Minch 21, Ethiopia
| | - Han Wang
- School of Environmental Science and Engineering, Tianjin University, Weijin Road, Tianjin 300072, China
| | - Chenbo Shen
- School of Environmental Science and Engineering, Tianjin University, Weijin Road, Tianjin 300072, China
| | - Rui Zhao
- School of Environmental Science and Engineering, Tianjin University, Weijin Road, Tianjin 300072, China
| | - Dan Zhao
- School of Environmental Science and Engineering, Tianjin University, Weijin Road, Tianjin 300072, China
| | - Hui Ding
- School of Environmental Science and Engineering, Tianjin University, Weijin Road, Tianjin 300072, China.
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Xuan Y, Mai Y, Xu Y, Zheng J, He Z, Shu L, Cao Y. Enhanced microbial nitrification-denitrification processes in a subtropical metropolitan river network. Water Res 2022; 222:118857. [PMID: 35868099 DOI: 10.1016/j.watres.2022.118857] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 07/09/2022] [Accepted: 07/11/2022] [Indexed: 06/15/2023]
Abstract
Urban rivers are hotspots of regional nitrogen (N) pollution and N transformations. Previous studies have reported that the microbial community of urban rivers was different from that of natural rivers. However, how microbial community affects N transformations in the urban rivers is still unclear. In this study, we employed N nutrients-related isotope technology (includes natural-abundance isotopes survey and isotope-labeling method) and bioinformatics methods (includes 16S rRNA high-throughput sequencing and quantitative PCR analysis) to investigate the major N transformations, microbial communities as well as functional gene abundances in a metropolitan river network. Our results suggested that the bacterial community structure in the highly urbanized rivers was characterized by higher richness, less complexity and increased abundances of nitrification and denitrifying bacterium compared to those in the suburban rivers. These differences were mainly caused by high sewage discharge and N loadings. In addition, the abundances of nitrifier gene (amoA) and denitrifier genes (nirK and nirS) were significantly higher in the highly urbanized rivers (2.36 × 103, 7.43 × 107 and 2.28 × 107 copies·mL-1) than that in the suburban rivers (0.43 × 103, 2.18 × 107 and 0.99 × 107 copies·mL-1). These changes in microbes have accelerated nitrification-denitrification processes in the highly urbanized rivers as compared to those in the suburban rivers, which was evidenced by environmental isotopes and the rates of nitrification (10.52 vs. 0.03 nmol·L-1·h-1) and denitrification (83.31 vs. 22.49 nmol·g-1·h-1). Overall, this study concluded that the excess exogenous N has significantly shaped the specific aquatic bacterial communities, which had a potential for enhancing nitrification-denitrification processes in the highly urbanized river network. This study provides a further understanding of microbial N cycling in urban river ecosystems and expands the combined application of isotopic technology and bioinformatics methods in studying biogeochemical cycling.
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Affiliation(s)
- Yingxue Xuan
- School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510006, China
| | - Yingwen Mai
- School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou 510006, China
| | - Yunqiu Xu
- School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou 510006, China
| | - Jianyi Zheng
- School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou 510006, China
| | - Zhili He
- School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510006, China
| | - Longfei Shu
- School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510006, China.
| | - Yingjie Cao
- School of Environmental Science and Engineering, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-sen University, Guangzhou 510006, China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510006, China.
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44
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Barneze AS, Whitaker J, McNamara NP, Ostle NJ. Interactions between climate warming and land management regulate greenhouse gas fluxes in a temperate grassland ecosystem. Sci Total Environ 2022; 833:155212. [PMID: 35421502 DOI: 10.1016/j.scitotenv.2022.155212] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 04/01/2022] [Accepted: 04/08/2022] [Indexed: 05/29/2023]
Abstract
Greenhouse gas (GHG) fluxes from grasslands are affected by climate warming and agricultural management practices including nitrogen (N) fertiliser application and grazing. However, the interactive effects of these factors are poorly resolved in field studies. We used a factorial in situ experiment - combining warming, N-fertiliser and above-ground cutting treatments - to explore their individual and interactive effects on plant-soil properties and GHG fluxes in a temperate UK grassland over two years. Our results showed no interactive treatment effects on plant productivity despite individual effects of N-fertiliser and warming on above- and below-ground biomass. There were, however, interactive treatment effects on GHG fluxes that varied across the two years. In year 1, warming and N-fertiliser increased CO2 and reduced N2O fluxes. N-fertilised also interacted with above-ground biomass (AGB) removal increasing N2O fluxes in year one and reducing CO2 fluxes in year two. The grassland was consistently a sink of CH4; N-fertilised increased the sink by 45% (year 1), AGB removal and warming reduced CH4 consumption by 44% and 43%, respectively (year 2). The majority of the variance in CO2 fluxes was explained by above-ground metrics (grassland productivity and leaf dry matter content), with microclimate (air and soil temperature and soil moisture) and below-ground (root N content) metrics also significant. Soil chemistry (soil mineral N and net mineralisation rate), below-ground (specific root length) and microclimate (soil moisture) metrics explained 49% and 24% of the variance in N2O and CH4 fluxes, respectively. Overall, our work demonstrates the importance of interactions between climate and management as determinants of short-term grassland GHG fluxes. These results show that reduced cutting combined with lower inorganic N-fertilisers would constrain grassland C and N cycling and GHG fluxes in warmer climatic conditions. This has implications for strategic grassland management decisions to mitigate GHG fluxes in a warming world.
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Affiliation(s)
- Arlete S Barneze
- Centre for Ecology & Hydrology, Lancaster Environment Centre, Library Avenue, Lancaster LA1 4AP, UK; Lancaster University, Lancaster Environment Centre, Library Avenue, Lancaster LA1 4YQ, UK; Wageningen University & Research, Soil Biology Group, PO Box 47, 6700 AA Wageningen, The Netherlands.
| | - Jeanette Whitaker
- Centre for Ecology & Hydrology, Lancaster Environment Centre, Library Avenue, Lancaster LA1 4AP, UK
| | - Niall P McNamara
- Centre for Ecology & Hydrology, Lancaster Environment Centre, Library Avenue, Lancaster LA1 4AP, UK
| | - Nicholas J Ostle
- Lancaster University, Lancaster Environment Centre, Library Avenue, Lancaster LA1 4YQ, UK
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Zhou Q, Feng F, Li FL, Liu J, Wang M, Huang S, Sun Y. Acylated homoserine lactones regulate the response of methane metabolism and nitrogen metabolism to florfenicol in anaerobic fermentation. Sci Total Environ 2022; 832:155035. [PMID: 35395307 DOI: 10.1016/j.scitotenv.2022.155035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 03/30/2022] [Accepted: 03/31/2022] [Indexed: 06/14/2023]
Abstract
Antimicrobial agents enter the ecological environment through animal excreta and disrupt metabolism in environmental microorganisms. Quorum sensing (QS) can help bacteria adapt to their surroundings. To explore how acyl-homoserine lactone (AHL) can adjust the influence of florfenicol on nitrogen cycling and methane metabolism in anaerobic fermentation, a small indoor thermostatic anaerobic fermentation model was established by adding exogenous acylated homoserine lactone (AHL) signal molecules with florfenicol as the stress factor. Through bacterial function prediction by PICRUST, we found that the addition of AHL further increased the promotion of methanogenesis_by_CO2_reduction_with_H2 and hydrogenotrophic methanogenesis by florfenicol. Before the third sampling, florfenicol significantly inhibited the enrichment of the denitrification pathway microbiota, whereas the addition of AHL significantly promoted the enrichment of the denitrification pathway microbiota. Functional annotation showed that florfenicol exposure stress significantly affected nitrogen and methane metabolism, and the addition of AHLs reduced the response of functional genes to florfenicol. All nitrogen cycling enzymes with significantly different abundances in treatment groups were substantially associated with methane-metabolizing enzymes. Glutamate metabolism is significant in the process of anaerobic fermentation, and is a correlation point between nitrogen and methane metabolism. In our experiment, AHL was the influencing factor at the highest latitude that directly regulates the metabolism of NO3--N and the degradation process of florfenicol. The addition of AHL curbed the inhibitory effect of florfenicol on some functional microbiota, improved the stability of fermentation microbiota, and weakened the impact of antibiotic residues by improving its degradation efficiency.
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Affiliation(s)
- Qin Zhou
- National Laboratory of Safety Evaluation (Environmental Assessment) of Veterinary Drugs, National Risk Assessment Laboratory for Antimicrobial Resistance of Animal Original Bacteria, College of Veterinary Medicine, South China Agricultural University, 483 Wushan Road, Guangzhou 510642, China; College of Life Sciences and Engineering, Foshan University, 18 Jiangwan Road, Foshan 528011, Guangdong Province, China
| | - Fengling Feng
- National Laboratory of Safety Evaluation (Environmental Assessment) of Veterinary Drugs, National Risk Assessment Laboratory for Antimicrobial Resistance of Animal Original Bacteria, College of Veterinary Medicine, South China Agricultural University, 483 Wushan Road, Guangzhou 510642, China
| | - Fu Lin Li
- National Laboratory of Safety Evaluation (Environmental Assessment) of Veterinary Drugs, National Risk Assessment Laboratory for Antimicrobial Resistance of Animal Original Bacteria, College of Veterinary Medicine, South China Agricultural University, 483 Wushan Road, Guangzhou 510642, China
| | - Junlin Liu
- National Laboratory of Safety Evaluation (Environmental Assessment) of Veterinary Drugs, National Risk Assessment Laboratory for Antimicrobial Resistance of Animal Original Bacteria, College of Veterinary Medicine, South China Agricultural University, 483 Wushan Road, Guangzhou 510642, China
| | - Mianzhi Wang
- Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, College of Veterinary Medicine, Yangzhou University, Yangzhou 225009, Jiangsu, China
| | - Shujian Huang
- College of Life Sciences and Engineering, Foshan University, 18 Jiangwan Road, Foshan 528011, Guangdong Province, China
| | - Yongxue Sun
- National Laboratory of Safety Evaluation (Environmental Assessment) of Veterinary Drugs, National Risk Assessment Laboratory for Antimicrobial Resistance of Animal Original Bacteria, College of Veterinary Medicine, South China Agricultural University, 483 Wushan Road, Guangzhou 510642, China.
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Lu L, Chen C, Ke T, Wang M, Sima M, Huang S. Long-term metal pollution shifts microbial functional profiles of nitrification and denitrification in agricultural soils. Sci Total Environ 2022; 830:154732. [PMID: 35346706 DOI: 10.1016/j.scitotenv.2022.154732] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2021] [Revised: 03/06/2022] [Accepted: 03/17/2022] [Indexed: 06/14/2023]
Abstract
The increasing contamination of heavy metals in agricultural soils and its impact on the nitrogen (N) cycle and N use efficiency have attracted considerable attention in recent years. In this study, agricultural soils neighboring the Dabaoshan copper mining area (DBS) and Qingyuan electronic-waste recycling area (QY), in Guangdong, China, were sampled to study the interaction between heavy metals and nitrification/denitrification processes, especially the related microbial functional profiles. Results showed that the contamination of heavy metals affected nitrifiers and denitrifiers differently. The potential nitrification activity was about four times lower in metal-polluted soils compared with the unpolluted ones, with a significant decrease in the abundance of amoA and nxrB (p < 0.05) in the polluted samples. On the other hand, the potential denitrification activity was more metal-resistant, which attributed to its complex species composition as shown by a slightly higher α-diversity index, and was slightly higher (p > 0.05) in the polluted samples. Among the five denitrifying genes tested, nosZ gene had the highest increase and the nirK gene the most decrease in numbers and in the polluted soils. The metal-polluted soils had fewer correlations among N functional genes based on the co-occurrence network analysis. In addition, the core taxa of the whole bacterial community changed from copiotrophic to oligotrophic bacteria in the presence of heavy metals. Mantel test indicated that heavy metals were the dominant factors determining N-related genes while the bacterial community composition was due to a combination of heavy metal presence and soil properties such as TOC, NO2-, and pH. It is concluded that long-term heavy metals pollution potentially affected nitrifiers and denitrifiers differently as indicated by the shift in N functional genes and the change in nitrification/denitrification processes.
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Affiliation(s)
- Lu Lu
- State Key Laboratory of Urban Water Resource and Environment, School of Civil and Environmental Engineering, Harbin Institute of Technology, Shenzhen 518055, China.
| | - Chen Chen
- State Environmental Protection Key Laboratory of Urban Ecological Environment Simulation and Protection, South China Institute of Environmental Sciences, Ministry of Ecology and Environment of China, Guangzhou 510535, China
| | - Tan Ke
- State Key Laboratory of Urban Water Resource and Environment, School of Civil and Environmental Engineering, Harbin Institute of Technology, Shenzhen 518055, China
| | - Min Wang
- State Environmental Protection Key Laboratory of Urban Ecological Environment Simulation and Protection, South China Institute of Environmental Sciences, Ministry of Ecology and Environment of China, Guangzhou 510535, China
| | - Matthew Sima
- Department of Civil and Environmental Engineering, Princeton University, Princeton, NJ 08544, USA
| | - Shan Huang
- Department of Civil and Environmental Engineering, Princeton University, Princeton, NJ 08544, USA.
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Andresen LC, Bodé S, Björk RG, Michelsen A, Aerts R, Boeckx P, Cornelissen JHC, Klanderud K, van Logtestijn RSP, Rütting T. Patterns of free amino acids in tundra soils reflect mycorrhizal type, shrubification, and warming. Mycorrhiza 2022; 32:305-313. [PMID: 35307782 PMCID: PMC9184409 DOI: 10.1007/s00572-022-01075-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Accepted: 03/07/2022] [Indexed: 06/14/2023]
Abstract
The soil nitrogen (N) cycle in cold terrestrial ecosystems is slow and organically bound N is an important source of N for plants in these ecosystems. Many plant species can take up free amino acids from these infertile soils, either directly or indirectly via their mycorrhizal fungi. We hypothesized that plant community changes and local plant community differences will alter the soil free amino acid pool and composition; and that long-term warming could enhance this effect. To test this, we studied the composition of extractable free amino acids at five separate heath, meadow, and bog locations in subarctic and alpine Scandinavia, with long-term (13 to 24 years) warming manipulations. The plant communities all included a mixture of ecto-, ericoid-, and arbuscular mycorrhizal plant species. Vegetation dominated by grasses and forbs with arbuscular and non-mycorrhizal associations showed highest soil free amino acid content, distinguishing them from the sites dominated by shrubs with ecto- and ericoid-mycorrhizal associations. Warming increased shrub and decreased moss cover at two sites, and by using redundancy analysis, we found that altered soil free amino acid composition was related to this plant cover change. From this, we conclude that the mycorrhizal type is important in controlling soil N cycling and that expansion of shrubs with ectomycorrhiza (and to some extent ericoid mycorrhiza) can help retain N within the ecosystems by tightening the N cycle.
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Affiliation(s)
- Louise C Andresen
- Department of Earth Science, University of Gothenburg, Gothenburg, Sweden.
| | - Samuel Bodé
- Isotope Bioscience Laboratory (ISOFYS), Department of Green Chemistry and Technology, Ghent University, Ghent, Belgium
| | - Robert G Björk
- Department of Earth Science, University of Gothenburg, Gothenburg, Sweden
- Gothenburg Global Biodiversity Centre, Gothenburg, Sweden
| | | | - Rien Aerts
- Department of Ecological Science, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
| | - Pascal Boeckx
- Isotope Bioscience Laboratory (ISOFYS), Department of Green Chemistry and Technology, Ghent University, Ghent, Belgium
| | - J Hans C Cornelissen
- Department of Ecological Science, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
| | - Kari Klanderud
- Faculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences, Aas, Norway
| | | | - Tobias Rütting
- Department of Earth Science, University of Gothenburg, Gothenburg, Sweden
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48
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Fang W, Wang Q, Li Y, Hua J, Jin X, Yan D, Cao A. Microbial regulation of nitrous oxide emissions from chloropicrin-fumigated soil amended with biochar. J Hazard Mater 2022; 429:128060. [PMID: 35236032 DOI: 10.1016/j.jhazmat.2021.128060] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Revised: 12/06/2021] [Accepted: 12/07/2021] [Indexed: 06/14/2023]
Abstract
The microbial mechanism underpinning biochar's ability to reduce emissions of the potent greenhouse gas nitrous oxide (N2O) is little understood. We combined high-throughput gene sequencing with a dual-label 15N-18O isotope to examine microbial mechanisms operative in biochar made from Crofton Weed (BC1) or pine wood pellets (BC2) and the N2O emissions from those biochar materials when present in chloropicrin (CP)-fumigated soil. Both BC1 and BC2 reduced N2O total emissions by 62.9-71.9% and 48.8-52.0% in CP-fumigated soil, respectively. During the 7-day fumigation phase, however, both BC1 and BC2 increased N2O production by significantly promoting nirKS and norBC gene abundance, which indicated that the N2O emission pathway had switched from heterotrophic denitrification to nitrifier denitrification. During the post-fumigation phase, BC1 and BC2 significantly decreased N2O production as insufficient nitrogen was available to support rapid population increases of nitrifying or denitrifying bacteria. BC1 and BC2 significantly reduced CP's inhibition of nitrifying archaeal bacteria (AOA, AOB) and the denitrifying bacterial genes (nirS, nirK, nosZ), which promoted those bacterial populations in fumigated soil to similar levels observed in unfumigated soil. Our study provided insight on the impact of biochar and microbes on N2O emissions.
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Affiliation(s)
- Wensheng Fang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Qiuxia Wang
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Yuan Li
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China
| | - Juling Hua
- Institute of Plant Protection, Jiangxi Academy of Agricultural Sciences, Nanchang, Jiangxi 330200, China
| | - Xi Jin
- Hebei Technology Innovation Center for Green Management of Soil-borne Diseases, Baoding University, Baoding, Hebei 071000, China
| | - Dongdong Yan
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
| | - Aocheng Cao
- Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China.
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49
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Deng C, Zhao R, Qiu Z, Li B, Zhang T, Guo F, Mu R, Wu Y, Qiao X, Zhang L, Cheng JJ, Ni J, Yu K. Genome-centric metagenomics provides new insights into the microbial community and metabolic potential of landfill leachate microbiota. Sci Total Environ 2022; 816:151635. [PMID: 34774959 DOI: 10.1016/j.scitotenv.2021.151635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Revised: 11/08/2021] [Accepted: 11/08/2021] [Indexed: 06/13/2023]
Abstract
Landfills are important sources of microorganisms associated with anaerobic digestion. However, the knowledge on microbiota along with their functional potential in this special habitat are still lacking. In this study, we recovered 1168 non-redundant metagenome-assembled genomes (MAGs) from nine landfill leachate samples collected from eight cities across China, spanning 42 phyla, 73 classes, 114 orders, 189 families, and 267 genera. Totally, 74.1% of 1168 MAGs could not be classified to any known species and 5.9% of these MAGs belonged to microbial dark matter phyla. Two putative novel classes were discovered from landfill leachate samples. The identification of thousands of novel carbohydrate-active enzymes showed similar richness level compared to the cow rumen microbiota. The methylotrophic methanogenic pathway was speculated to contribute significantly to methane production in the landfill leachate because of its co-occurrence with the acetoclastic and hydrogenotrophic methanogenic pathways. The genetic potential of dissimilatory nitrate reduction to ammonium (DNRA) was observed, implying DNRA may play a role in ammonium generation in landfill leachate. These findings implied that landfill leachate might be a valuable microbial resource repository and filled the previous understanding gaps for both methanogenesis and nitrogen cycling in landfill leachate microbiota. Our study provides a comprehensive genomic catalog and substantially provides unprecedented taxonomic and functional profiles of the landfill leachate microbiota.
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Affiliation(s)
- Chunfang Deng
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen 518055, China; College of Environmental Sciences and Engineering, Key Laboratory of Water and Sediment Sciences, Ministry of Education, Peking University, Beijing 100871, China
| | - Renxin Zhao
- Guangdong Provincial Engineering Research Center for Urban Water Recycling and Environmental Safety, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China; Shenzhen Engineering Research Laboratory for Sludge and Food Waste Treatment and Resource Recovery, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China
| | - Zhiguang Qiu
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen 518055, China
| | - Bing Li
- Guangdong Provincial Engineering Research Center for Urban Water Recycling and Environmental Safety, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China; Shenzhen Engineering Research Laboratory for Sludge and Food Waste Treatment and Resource Recovery, Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China.
| | - Tong Zhang
- Environmental Biotechnology Laboratory, Department of Civil Engineering, The University of Hong Kong, Pokfulam Road, Hong Kong 999077, China
| | - Feng Guo
- School of Life Sciences, Xiamen University, Xiamen 361005, China
| | - Rong Mu
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen 518055, China
| | - Yang Wu
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen 518055, China
| | - Xuejiao Qiao
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen 518055, China
| | - Liyu Zhang
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen 518055, China
| | - Jay J Cheng
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen 518055, China; Biological & Agricultural Engineering Department, North Carolina State University, Raleigh, NC 27695, USA
| | - Jinren Ni
- College of Environmental Sciences and Engineering, Key Laboratory of Water and Sediment Sciences, Ministry of Education, Peking University, Beijing 100871, China
| | - Ke Yu
- School of Environment and Energy, Peking University Shenzhen Graduate School, Shenzhen 518055, China.
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50
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Nyer SC, Volkenborn N, Aller RC, Graffam M, Zhu Q, Price RE. Nitrogen transformations in constructed wetlands: A closer look at plant-soil interactions using chemical imaging. Sci Total Environ 2022; 816:151560. [PMID: 34785218 DOI: 10.1016/j.scitotenv.2021.151560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 10/24/2021] [Accepted: 11/05/2021] [Indexed: 06/13/2023]
Abstract
Constructed wetlands have long been used for domestic wastewater treatment. Despite the widespread application of constructed wetlands for wastewater remediation, they are still regarded as a black box in terms of the complex biogeochemical processes occurring internally, particularly with respect to plant-soil (and nitrogen) interactions. Additionally, many critical processes pertaining to nitrogen transformations in constructed wetlands are thought to occur in microzones within the rhizosphere, highlighting the need for studies with sub-cm spatial resolution. In this study we coupled nitrogen porewater measurements with chemical imaging to determine spatio-temporal patterns in porewater O2 and pH to assess the extent of plant-induced changes in soil redox dynamics that influence nitrogen biogeochemical cycling during dosed application of nitrogen-rich artificial wastewater. Planar optode imaging revealed extensive O2 fluxes to otherwise anoxic sediment via radial oxygen loss (ROL) from Typha latifolia roots. The contribution of photosynthetic O2 from this plant species was minimal as a strong oxic signal persisted in darkness (diel cycles). NH4+ and NOx- removal were strongly correlated with the extent of oxic and anoxic areas, a function largely attributed to the presence of plants and the associated enhanced microbial communities supported. The distribution of nitrogen species within the Typha rhizosphere exhibited reproducible trends as a function of distance from roots, with concentrations highest close to roots (1-5 mm from root surface) and subsequently decreasing at greater distances. Microscale spatio-temporal redox heterogeneity within the rhizosphere due to ROL imposed by plants promoted nitrogen removal likely by stimulating the coupling between nitrification and denitrification in these systems. Collectively, this study highlights the profound importance of plants in exerting controls on soil conditions and nitrogen cycling in constructed wetland systems. With careful considerations, constructed wetlands designed to promote wetland plants' functions may enhance nitrogen removal and mitigate nitrogen pollution.
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Affiliation(s)
- Samantha C Nyer
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY 11794, USA; The New York State Center for Clean Water Technology, Stony Brook University, Stony Brook, NY 11794, USA.
| | - Nils Volkenborn
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY 11794, USA; The New York State Center for Clean Water Technology, Stony Brook University, Stony Brook, NY 11794, USA
| | - Robert C Aller
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY 11794, USA
| | - Molly Graffam
- Cornell Cooperative Extension of Suffolk County, Riverhead, NY 11901, USA
| | - Qingzhi Zhu
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY 11794, USA; The New York State Center for Clean Water Technology, Stony Brook University, Stony Brook, NY 11794, USA
| | - Roy E Price
- School of Marine and Atmospheric Sciences, Stony Brook University, Stony Brook, NY 11794, USA; The New York State Center for Clean Water Technology, Stony Brook University, Stony Brook, NY 11794, USA
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