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Zhang Y, Escobar A, Guo T, Xu CQ. Label-Free Cyanobacteria Quantification Using a Microflow Cytometry Platform for Early Warning Detection and Characterization of Hazardous Cyanobacteria Blooms. MICROMACHINES 2023; 14:mi14050965. [PMID: 37241590 DOI: 10.3390/mi14050965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2023] [Revised: 04/21/2023] [Accepted: 04/25/2023] [Indexed: 05/28/2023]
Abstract
The eutrophication of aquatic ecosystems caused by rapid human urbanization has led to an increased production of potentially hazardous bacterial populations, known as blooms. One of the most notorious forms of these aquatic blooms are cyanobacteria, which in sufficiently large quantities can pose a hazard to human health through ingestion or prolonged exposure. Currently, one of the greatest difficulties in regulating and monitoring these potential hazards is the early detection of cyanobacterial blooms, in real time. Therefore, this paper presents an integrated microflow cytometry platform for label-free phycocyanin fluorescence detection, which can be used for the rapid quantification of low-level cyanobacteria and provide early warning alerts for potential harmful cyanobacterial blooms. An automated cyanobacterial concentration and recovery system (ACCRS) was developed and optimized to reduce the assay volume, from 1000 mL to 1 mL, to act as a pre-concentrator and subsequently enhance the detection limit. The microflow cytometry platform utilizes an on-chip laser-facilitated detection to measure the in vivo fluorescence emitted from each individual cyanobacterial cell, as opposed to measuring overall fluorescence of the whole sample, potentially decreasing the detection limit. By applying transit time and amplitude thresholds, the proposed cyanobacteria detection method was verified by the traditional cell counting technique using a hemocytometer with an R2 value of 0.993. It was shown that the limit of quantification of this microflow cytometry platform can be as low as 5 cells/mL for Microcystis aeruginosa, 400-fold lower than the Alert Level 1 (2000 cells/mL) set by the World Health Organization (WHO). Furthermore, the decreased detection limit may facilitate the future characterization of cyanobacterial bloom formation to better provide authorities with ample time to take the appropriate actions to mitigate human risk from these potentially hazardous blooms.
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Affiliation(s)
- Yushan Zhang
- Department of Biomedical Engineering, McMaster University, Hamilton, ON L8S 4L8, Canada
| | - Andres Escobar
- Department of Biomedical Engineering, McMaster University, Hamilton, ON L8S 4L8, Canada
| | - Tianyi Guo
- Forsee Instruments Ltd., Hamilton, ON L8P 0A1, Canada
| | - Chang-Qing Xu
- Department of Biomedical Engineering, McMaster University, Hamilton, ON L8S 4L8, Canada
- Department of Engineering Physics, McMaster University, Hamilton, ON L8S 4L8, Canada
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Algorri JF, Roldán-Varona P, Fernández-Manteca MG, López-Higuera JM, Rodriguez-Cobo L, Cobo-García A. Photonic Microfluidic Technologies for Phytoplankton Research. BIOSENSORS 2022; 12:1024. [PMID: 36421145 PMCID: PMC9688872 DOI: 10.3390/bios12111024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 11/10/2022] [Accepted: 11/13/2022] [Indexed: 06/16/2023]
Abstract
Phytoplankton is a crucial component for the correct functioning of different ecosystems, climate regulation and carbon reduction. Being at least a quarter of the biomass of the world's vegetation, they produce approximately 50% of atmospheric O2 and remove nearly a third of the anthropogenic carbon released into the atmosphere through photosynthesis. In addition, they support directly or indirectly all the animals of the ocean and freshwater ecosystems, being the base of the food web. The importance of their measurement and identification has increased in the last years, becoming an essential consideration for marine management. The gold standard process used to identify and quantify phytoplankton is manual sample collection and microscopy-based identification, which is a tedious and time-consuming task and requires highly trained professionals. Microfluidic Lab-on-a-Chip technology represents a potential technical solution for environmental monitoring, for example, in situ quantifying toxic phytoplankton. Its main advantages are miniaturisation, portability, reduced reagent/sample consumption and cost reduction. In particular, photonic microfluidic chips that rely on optical sensing have emerged as powerful tools that can be used to identify and analyse phytoplankton with high specificity, sensitivity and throughput. In this review, we focus on recent advances in photonic microfluidic technologies for phytoplankton research. Different optical properties of phytoplankton, fabrication and sensing technologies will be reviewed. To conclude, current challenges and possible future directions will be discussed.
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Affiliation(s)
- José Francisco Algorri
- Photonics Engineering Group, Universidad de Cantabria, 39005 Santander, Spain
- CIBER de Bioingeniera, Biomateriales y Nanomedicina, Instituto de Salud Carlos III, 28029 Madrid, Spain
- Instituto de Investigación Sanitaria Valdecilla (IDIVAL), 39011 Santander, Spain
| | - Pablo Roldán-Varona
- Photonics Engineering Group, Universidad de Cantabria, 39005 Santander, Spain
- CIBER de Bioingeniera, Biomateriales y Nanomedicina, Instituto de Salud Carlos III, 28029 Madrid, Spain
- Instituto de Investigación Sanitaria Valdecilla (IDIVAL), 39011 Santander, Spain
| | | | - José Miguel López-Higuera
- Photonics Engineering Group, Universidad de Cantabria, 39005 Santander, Spain
- CIBER de Bioingeniera, Biomateriales y Nanomedicina, Instituto de Salud Carlos III, 28029 Madrid, Spain
- Instituto de Investigación Sanitaria Valdecilla (IDIVAL), 39011 Santander, Spain
| | - Luis Rodriguez-Cobo
- Photonics Engineering Group, Universidad de Cantabria, 39005 Santander, Spain
- CIBER de Bioingeniera, Biomateriales y Nanomedicina, Instituto de Salud Carlos III, 28029 Madrid, Spain
- Instituto de Investigación Sanitaria Valdecilla (IDIVAL), 39011 Santander, Spain
| | - Adolfo Cobo-García
- Photonics Engineering Group, Universidad de Cantabria, 39005 Santander, Spain
- CIBER de Bioingeniera, Biomateriales y Nanomedicina, Instituto de Salud Carlos III, 28029 Madrid, Spain
- Instituto de Investigación Sanitaria Valdecilla (IDIVAL), 39011 Santander, Spain
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3
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Minute-sensitive real-time monitoring of neural cells through printed graphene microelectrodes. Biosens Bioelectron 2022; 210:114284. [DOI: 10.1016/j.bios.2022.114284] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Revised: 04/05/2022] [Accepted: 04/10/2022] [Indexed: 12/11/2022]
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Alias AB, Mishra S, Pendharkar G, Chen CS, Liu CH, Liu YJ, Yao DJ. Microfluidic Microalgae System: A Review. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27061910. [PMID: 35335274 PMCID: PMC8954360 DOI: 10.3390/molecules27061910] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Revised: 03/07/2022] [Accepted: 03/09/2022] [Indexed: 01/14/2023]
Abstract
Microalgae that have recently captivated interest worldwide are a great source of renewable, sustainable and economical biofuels. The extensive potential application in the renewable energy, biopharmaceutical and nutraceutical industries have made them necessary resources for green energy. Microalgae can substitute liquid fossil fuels based on cost, renewability and environmental concern. Microfluidic-based systems outperform their competitors by executing many functions, such as sorting and analysing small volumes of samples (nanolitre to picolitre) with better sensitivities. In this review, we consider the developing uses of microfluidic technology on microalgal processes such as cell sorting, cultivation, harvesting and applications in biofuels and biosensing.
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Affiliation(s)
- Anand Baby Alias
- Institute of NanoEngineering and MicroSystems, National Tsing Hua University, Hsinchu 30013, Taiwan; (A.B.A.); (S.M.); (C.-H.L.)
| | - Shubhanvit Mishra
- Institute of NanoEngineering and MicroSystems, National Tsing Hua University, Hsinchu 30013, Taiwan; (A.B.A.); (S.M.); (C.-H.L.)
| | - Gaurav Pendharkar
- Department of Power Mechanical Engineering, National Tsing Hua University, Hsinchu 30013, Taiwan;
| | - Chi-Shuo Chen
- Department of Biomedical Engineering and Environmental Sciences, National Tsing Hua University, Hsinchu 30013, Taiwan;
| | - Cheng-Hsien Liu
- Institute of NanoEngineering and MicroSystems, National Tsing Hua University, Hsinchu 30013, Taiwan; (A.B.A.); (S.M.); (C.-H.L.)
- Department of Power Mechanical Engineering, National Tsing Hua University, Hsinchu 30013, Taiwan;
| | - Yi-Ju Liu
- Food Industry Research and Development Institute, Hsinchu 300193, Taiwan;
| | - Da-Jeng Yao
- Institute of NanoEngineering and MicroSystems, National Tsing Hua University, Hsinchu 30013, Taiwan; (A.B.A.); (S.M.); (C.-H.L.)
- Department of Power Mechanical Engineering, National Tsing Hua University, Hsinchu 30013, Taiwan;
- Correspondence:
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How does the Internet of Things (IoT) help in microalgae biorefinery? Biotechnol Adv 2021; 54:107819. [PMID: 34454007 DOI: 10.1016/j.biotechadv.2021.107819] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2021] [Revised: 07/27/2021] [Accepted: 08/22/2021] [Indexed: 12/14/2022]
Abstract
Microalgae biorefinery is a platform for the conversion of microalgal biomass into a variety of value-added products, such as biofuels, bio-based chemicals, biomaterials, and bioactive substances. Commercialization and industrialization of microalgae biorefinery heavily rely on the capability and efficiency of large-scale cultivation of microalgae. Thus, there is an urgent need for novel technologies that can be used to monitor, automatically control, and precisely predict microalgae production. In light of this, innovative applications of the Internet of things (IoT) technologies in microalgae biorefinery have attracted tremendous research efforts. IoT has potential applications in a microalgae biorefinery for the automatic control of microalgae cultivation, monitoring and manipulation of microalgal cultivation parameters, optimization of microalgae productivity, identification of toxic algae species, screening of target microalgae species, classification of microalgae species, and viability detection of microalgal cells. In this critical review, cutting-edge IoT technologies that could be adopted to microalgae biorefinery in the upstream and downstream processing are described comprehensively. The current advances of the integration of IoT with microalgae biorefinery are presented. What this review discussed includes automation, sensors, lab-on-chip, and machine learning, which are the main constituent elements and advanced technologies of IoT. Specifically, future research directions are discussed with special emphasis on the development of sensors, the application of microfluidic technology, robotized microalgae, high-throughput platforms, deep learning, and other innovative techniques. This review could contribute greatly to the novelty and relevance in the field of IoT-based microalgae biorefinery to develop smarter, safer, cleaner, greener, and economically efficient techniques for exhaustive energy recovery during the biorefinery process.
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Song Y, Li Z, Feng A, Zhang J, Liu Z, Li D. Electrokinetic detection and separation of living algae in a microfluidic chip: implication for ship's ballast water analysis. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:22853-22863. [PMID: 33428091 DOI: 10.1007/s11356-020-12315-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2020] [Accepted: 12/30/2020] [Indexed: 06/12/2023]
Abstract
Detecting living algae from treated ship's ballast water is an important task for port state control (PSC) under the requirement of the International Ballast Water Convention. In this paper, electrokinetic detection and separation of living algae from NaClO- and UV-treated ship's ballast water in a microfluidic chip are presented. The electrokinetic movement of algae in a straight poly ethylene glycol (PEG)-modified PDMS microchannel filled with 10% PEG solution was measured by using an optical microscope. The experimental results show that the moving velocity of dead algae is lower by more than 80% in comparison with living algae. The decreased velocity is larger for larger dead algae and the velocity is decreased to zero for dead algae larger than 6 μm in diameter. A curve was obtained to evaluate the vitality of algae with similar moving velocity but different sizes. Electrokinetic separation of living algae from a mixture sample in a straight channel was also achieved. The method presented in this paper provides a moving velocity-based approach for quickly evaluating the living status of algae in treated ship's ballast water.
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Affiliation(s)
- Yongxin Song
- Department of Marine Engineering, Dalian Maritime University, Dalian, 116026, China
| | - Zhen Li
- Department of Marine Engineering, Dalian Maritime University, Dalian, 116026, China
| | - Angran Feng
- China Classification Society Guangzhou Branch, Guangzhou, 519000, China
| | - Junyan Zhang
- Department of Marine Engineering, Dalian Maritime University, Dalian, 116026, China
| | - Zhijian Liu
- Department of Marine Engineering, Dalian Maritime University, Dalian, 116026, China
| | - Dongqing Li
- Department of Mechanical and Mechatronics Engineering, University of Waterloo, Waterloo, ON, N2L 3G1, Canada.
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Clarke GA, Hartse BX, Niaraki Asli AE, Taghavimehr M, Hashemi N, Abbasi Shirsavar M, Montazami R, Alimoradi N, Nasirian V, Ouedraogo LJ, Hashemi NN. Advancement of Sensor Integrated Organ-on-Chip Devices. SENSORS (BASEL, SWITZERLAND) 2021; 21:1367. [PMID: 33671996 PMCID: PMC7922590 DOI: 10.3390/s21041367] [Citation(s) in RCA: 40] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/02/2021] [Revised: 02/10/2021] [Accepted: 02/11/2021] [Indexed: 02/06/2023]
Abstract
Organ-on-chip devices have provided the pharmaceutical and tissue engineering worlds much hope since they arrived and began to grow in sophistication. However, limitations for their applicability were soon realized as they lacked real-time monitoring and sensing capabilities. The users of these devices relied solely on endpoint analysis for the results of their tests, which created a chasm in the understanding of life between the lab the natural world. However, this gap is being bridged with sensors that are integrated into organ-on-chip devices. This review goes in-depth on different sensing methods, giving examples for various research on mechanical, electrical resistance, and bead-based sensors, and the prospects of each. Furthermore, the review covers works conducted that use specific sensors for oxygen, and various metabolites to characterize cellular behavior and response in real-time. Together, the outline of these works gives a thorough analysis of the design methodology and sophistication of the current sensor integrated organ-on-chips.
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Affiliation(s)
- Gabriel A. Clarke
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA; (G.A.C.); (B.X.H.); (A.E.N.A.); (M.T.); (M.A.S.); (R.M.); (N.A.); (V.N.); (L.J.O.)
| | - Brenna X. Hartse
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA; (G.A.C.); (B.X.H.); (A.E.N.A.); (M.T.); (M.A.S.); (R.M.); (N.A.); (V.N.); (L.J.O.)
| | - Amir Ehsan Niaraki Asli
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA; (G.A.C.); (B.X.H.); (A.E.N.A.); (M.T.); (M.A.S.); (R.M.); (N.A.); (V.N.); (L.J.O.)
| | - Mehrnoosh Taghavimehr
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA; (G.A.C.); (B.X.H.); (A.E.N.A.); (M.T.); (M.A.S.); (R.M.); (N.A.); (V.N.); (L.J.O.)
| | - Niloofar Hashemi
- Department of Materials Science and Engineering, Sharif University of Technology, Tehran 11365, Iran;
| | - Mehran Abbasi Shirsavar
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA; (G.A.C.); (B.X.H.); (A.E.N.A.); (M.T.); (M.A.S.); (R.M.); (N.A.); (V.N.); (L.J.O.)
| | - Reza Montazami
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA; (G.A.C.); (B.X.H.); (A.E.N.A.); (M.T.); (M.A.S.); (R.M.); (N.A.); (V.N.); (L.J.O.)
| | - Nima Alimoradi
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA; (G.A.C.); (B.X.H.); (A.E.N.A.); (M.T.); (M.A.S.); (R.M.); (N.A.); (V.N.); (L.J.O.)
| | - Vahid Nasirian
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA; (G.A.C.); (B.X.H.); (A.E.N.A.); (M.T.); (M.A.S.); (R.M.); (N.A.); (V.N.); (L.J.O.)
| | - Lionel J. Ouedraogo
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA; (G.A.C.); (B.X.H.); (A.E.N.A.); (M.T.); (M.A.S.); (R.M.); (N.A.); (V.N.); (L.J.O.)
| | - Nicole N. Hashemi
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA; (G.A.C.); (B.X.H.); (A.E.N.A.); (M.T.); (M.A.S.); (R.M.); (N.A.); (V.N.); (L.J.O.)
- Department of Biomedical Sciences, Iowa State University, Ames, IA 50011, USA
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Fukuba T, Fujii T. Lab-on-a-chip technology for in situ combined observations in oceanography. LAB ON A CHIP 2021; 21:55-74. [PMID: 33300537 DOI: 10.1039/d0lc00871k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The oceans sustain the global environment and diverse ecosystems through a variety of biogeochemical processes and their complex interactions. In order to understand the dynamism of the local or global marine environments, multimodal combined observations must be carried out in situ. On the other hand, instrumentation of in situ measurement techniques enabling biological and/or biochemical combined observations is challenging in aquatic environments, including the ocean, because biochemical flow analyses require a more complex configuration than physicochemical electrode sensors. Despite this technical hurdle, in situ analyzers have been developed to measure the concentrations of seawater contents such as nutrients, trace metals, and biological components. These technologies have been used for cutting-edge ocean observations to elucidate the biogeochemical properties of water mass with a high spatiotemporal resolution. In this context, the contribution of lab-on-a-chip (LoC) technology toward the miniaturization and functional integration of in situ analyzers has been gaining momentum. Due to their mountability, in situ LoC technologies provide ideal instrumentation for underwater analyzers, especially for miniaturized underwater observation platforms. Consequently, the appropriate combination of reliable LoC and underwater technologies is essential to realize practical in situ LoC analyzers suitable for underwater environments, including the deep sea. Moreover, the development of fundamental LoC technologies for underwater analyzers, which operate stably in extreme environments, should also contribute to in situ measurements for public or industrial purposes in harsh environments as well as the exploration of the extraterrestrial frontier.
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Affiliation(s)
- Tatsuhiro Fukuba
- Institute for Marine-Earth Exploration and Engineering, Japan Agency for Marine-Earth Science and Technology, Natsushima-cho 2-15, Yokosuka, Kanagawa 237-0061, Japan.
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de Bruijn DS, Ter Braak PM, Van de Waal DB, Olthuis W, van den Berg A. Coccolithophore calcification studied by single-cell impedance cytometry: Towards single-cell PIC:POC measurements. Biosens Bioelectron 2020; 173:112808. [PMID: 33221507 DOI: 10.1016/j.bios.2020.112808] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2020] [Accepted: 11/06/2020] [Indexed: 12/29/2022]
Abstract
Since the industrial revolution 30% of the anthropogenic CO2 is absorbed by oceans, resulting in ocean acidification, which is a threat to calcifying algae. As a result, there has been profound interest in the study of calcifying algae, because of their important role in the global carbon cycle. The coccolithophore Emiliania huxleyi is considered to be globally the most dominant calcifying algal species, which creates a unique exoskeleton from inorganic calcium carbonate platelets. The PIC (particulate inorganic carbon): POC (particulate organic carbon) ratio describes the relative amount of inorganic carbon in the algae and is a critical parameter in the ocean carbon cycle. In this research we explore the use of microfluidic single-cell impedance spectroscopy in the field of calcifying algae. Microfluidic impedance spectroscopy enables us to characterize single-cell electrical properties in a non-invasive and label-free way. We use the ratio of the impedance at high frequency vs. low frequency, known as opacity, to discriminate between calcified coccolithophores and coccolithophores with a calcite exoskeleton dissolved by acidification (decalcified). We have demonstrated that using opacity we can discriminate between calcified and decalcified coccolithophores with an accuracy of 94.1%. We have observed a correlation between the measured opacity and the cell height in the channel, which is supported by FEM simulations. The difference in cell density between calcified and decalcified cells can explain the difference in cell height and therefore the measured opacity.
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Affiliation(s)
- Douwe S de Bruijn
- BIOS Lab-on-a-Chip Group, MESA+ Institute, Max Planck Center for Complex Fluid Dynamics, University of Twente, P.O. Box 217, AE Enschede, 7500, the Netherlands.
| | - Paul M Ter Braak
- BIOS Lab-on-a-Chip Group, MESA+ Institute, Max Planck Center for Complex Fluid Dynamics, University of Twente, P.O. Box 217, AE Enschede, 7500, the Netherlands
| | - Dedmer B Van de Waal
- Department of Aquatic Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, PB Wageningen, 6708, the Netherlands
| | - Wouter Olthuis
- BIOS Lab-on-a-Chip Group, MESA+ Institute, Max Planck Center for Complex Fluid Dynamics, University of Twente, P.O. Box 217, AE Enschede, 7500, the Netherlands
| | - Albert van den Berg
- BIOS Lab-on-a-Chip Group, MESA+ Institute, Max Planck Center for Complex Fluid Dynamics, University of Twente, P.O. Box 217, AE Enschede, 7500, the Netherlands
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Yao J, Kim HS, Kim JY, Choi YE, Park J. Mechanical stress induced astaxanthin accumulation of H. pluvialis on a chip. LAB ON A CHIP 2020; 20:647-654. [PMID: 31930234 DOI: 10.1039/c9lc01030k] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Microalgae have been envisioned as a source of food, feed, health nutraceuticals, and cosmetics. Among various microalgae, Haematococcus pluvialis (H. pluvialis) is known to be the richest feedstock of natural astaxanthin. Astaxanthin is a highly effective antioxidation material and is being widely used in aquaculture, nutraceuticals, pharmacology, and feed industries. Here, we present a microfluidic chip consisting of a micropillar array and six sets of culture chambers, which enables sorting of motile flagellated vegetative stage H. pluvialis (15-20 μm) from cyst stage H. pluvialis as well as culture of the selected cells under a mechanically stressed microenvironment. The micropillar array successfully sorted only the motile early vegetative stage cells (avg. size = 19.8 ± 1.6 μm), where these sorted cells were uniformly loaded inside each culture chamber (229 ± 39 cells per chamber). The mechanical stress level applied to the cells was controlled by designing the culture chambers with different heights (5-70 μm). Raman analysis results revealed that the mechanical stress indeed induced the accumulation of astaxanthin in H. pluvialis. Also, the most effective chamber height enhancing the astaxanthin accumulation (i.e., 15 μm) was successfully screened using the developed chip. Approximately 9 times more astaxanthin accumulation was detected after 7 days of culture compared to the no mechanical stress condition. The results clearly demonstrate the capability of the developed chip to investigate bioactive metabolite accumulation of microalgae induced by mechanical stress, where the amount was quantitatively analyzed in a label-free manner. We believe that the developed chip has great potential for studying the effects of mechanical stress on not only H. pluvialis but also various microalgal species in general.
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Affiliation(s)
- Junyi Yao
- Department of Electrical and Electronic Engineering, Southern University of Science and Technology, Shenzhen 518055, China.
| | - Hyun Soo Kim
- Korea Institute of Machinery and Materials, Daegu Research Center for Medical Devices and Rehabilitation, Daegu 42994, South Korea
| | - Jee Young Kim
- Division of Environmental Science & Ecological Engineering, Korea University, Seoul, 02841, Korea.
| | - Yoon-E Choi
- Division of Environmental Science & Ecological Engineering, Korea University, Seoul, 02841, Korea.
| | - Jaewon Park
- Department of Electrical and Electronic Engineering, Southern University of Science and Technology, Shenzhen 518055, China.
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Stavrakis S, Holzner G, Choo J, deMello A. High-throughput microfluidic imaging flow cytometry. Curr Opin Biotechnol 2019; 55:36-43. [DOI: 10.1016/j.copbio.2018.08.002] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2018] [Revised: 07/05/2018] [Accepted: 08/02/2018] [Indexed: 10/28/2022]
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12
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Zieger SE, Seoane S, Laza-Martínez A, Knaus A, Mistlberger G, Klimant I. Spectral Characterization of Eight Marine Phytoplankton Phyla and Assessing a Pigment-Based Taxonomic Discriminant Analysis for the in Situ Classification of Phytoplankton Blooms. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2018; 52:14266-14274. [PMID: 30451494 DOI: 10.1021/acs.est.8b04528] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Early stage identification of harmful algal blooms (HABs) has gained significance for marine monitoring systems over the years. Various approaches for in situ classification have been developed. Among them, pigment-based taxonomic classification is one promising technique for in situ characterization of bloom compositions, although it is yet underutilized in marine monitoring programs. To demonstrate the applicability and importance of this powerful approach for monitoring programs, we combined an ultra low-cost and miniaturized multichannel fluorometer with Fisher's linear discriminant analysis (LDA). This enables the real-time characterization of algal blooms at order level based on their spectral properties. The classification capability of the algorithm was examined with a leave-one-out cross validation of 53 different unialgal cultures conducted in terms of standard statistical measures and independent figures of merit. The separation capability of the linear discriminant analysis was further successfully examined in mixed algal suspensions. Besides this, the impact of the growing status on the classification capability was assessed. Further, we provide a comprehensive study of spectral features of eight different phytoplankton phyla including an extensive study of fluorescence excitation spectra and marker pigments analyzed via HPLC. The analyzed phytoplankton species belong to the phyla of Cyanobacteria, Dinophyta (Dinoflagellates), Bacillariophyta (Diatoms), Haptophyta, Chlorophyta, Ochrophyta, Cryptophyta, and Euglenophyta.
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Affiliation(s)
- Silvia E Zieger
- Optical Sensors Group, Institute of Analytical Chemistry and Food Chemistry , Graz University of Technology , Graz , Austria
| | - Sergio Seoane
- Plant biology and Ecology Department, Faculty of Science and Technology , University of the Basque Country (UPV/EHU) , Leioa 48940 , Spain
| | - Aitor Laza-Martínez
- Plant biology and Ecology Department, Faculty of Science and Technology , University of the Basque Country (UPV/EHU) , Leioa 48940 , Spain
| | - Anna Knaus
- Optical Sensors Group, Institute of Analytical Chemistry and Food Chemistry , Graz University of Technology , Graz , Austria
| | - Günter Mistlberger
- Optical Sensors Group, Institute of Analytical Chemistry and Food Chemistry , Graz University of Technology , Graz , Austria
| | - Ingo Klimant
- Optical Sensors Group, Institute of Analytical Chemistry and Food Chemistry , Graz University of Technology , Graz , Austria
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Bertone E, Burford MA, Hamilton DP. Fluorescence probes for real-time remote cyanobacteria monitoring: A review of challenges and opportunities. WATER RESEARCH 2018; 141:152-162. [PMID: 29783168 DOI: 10.1016/j.watres.2018.05.001] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2017] [Revised: 05/02/2018] [Accepted: 05/02/2018] [Indexed: 06/08/2023]
Abstract
In recent years, there has been a widespread deployment of submersible fluorescence sensors by water utilities. They are used to measure diagnostic pigments and estimate algae and cyanobacteria abundance in near real-time. Despite being useful and promising tools, operators and decision-makers often rely on the data provided by these probes without a full understanding of their limitations. As a result, this may lead to wrong and misleading estimations which, in turn, means that researchers and technicians distrust these sensors. In this review paper, we list and discuss the main limitations of such probes, as well as identifying the effect of environmental factors on pigment production, and in turn, the conversion to cyanobacteria abundance estimation. We argue that a comprehensive calibration approach to obtain reliable readings goes well beyond manufacturers' recommendations, and should involve several context-specific experiments. We also believe that if such a comprehensive set of experiments is conducted, the data collected from fluorescence sensors could be used in artificial intelligence modelling approaches to reliably predict, in near real-time, the presence and abundance of different cyanobacteria species. This would have significant benefits for both drinking and recreational water management, given that cyanobacterial toxicity, and taste and odour compounds production, are species-dependent.
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Affiliation(s)
- Edoardo Bertone
- Griffith School of Engineering and Built Environment, Griffith University, Parklands Drive, Southport, Queensland 4222, Australia; Cities Research Institute, Griffith University, Parklands Drive, Southport, Queensland 4222, Australia.
| | - Michele A Burford
- Australian Rivers Institute, Griffith University, Kessels Road, Nathan, Queensland 4111, Australia
| | - David P Hamilton
- Australian Rivers Institute, Griffith University, Kessels Road, Nathan, Queensland 4111, Australia
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14
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Syed MS, Rafeie M, Vandamme D, Asadnia M, Henderson R, Taylor RA, Warkiani ME. Selective separation of microalgae cells using inertial microfluidics. BIORESOURCE TECHNOLOGY 2018; 252:91-99. [PMID: 29306136 DOI: 10.1016/j.biortech.2017.12.065] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2017] [Revised: 12/19/2017] [Accepted: 12/20/2017] [Indexed: 05/08/2023]
Abstract
Microalgae represent the most promising new source of biomass for the world's growing demands. However, the biomass productivity and quality is significantly decreased by the presence of bacteria or other invading microalgae species in the cultures. We therefore report a low-cost spiral-microchannel that can effectively separate and purify Tetraselmis suecica (lipid-rich microalgae) cultures from Phaeodactylum tricornutum (invasive diatom). Fluorescent polystyrene-microbeads of 6 μm and 10 μm diameters were first used as surrogate particles to optimize the microchannel design by mimicking the microalgae cell behaviour. Using the optimum flowrate, up to 95% of the P. tricornutum cells were separated from the culture without affecting the cell viability. This study shows, for the first time, the potential of inertial microfluidics to sort microalgae species with minimal size difference. Additionally, this approach can also be applied as a pre-sorting technique for water quality analysis.
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Affiliation(s)
- Maira S Syed
- School of Mechanical and Manufacturing Engineering, University of New South Wales, Australia; Biomass Lab, School of Chemical Engineering, University of New South Wales, Australia.
| | - Mehdi Rafeie
- School of Mechanical and Manufacturing Engineering, University of New South Wales, Australia
| | - Dries Vandamme
- Biomass Lab, School of Chemical Engineering, University of New South Wales, Australia; Laboratory for Aquatic Biology, KU Leuven, Campus Kulak, Belgium
| | - Mohsen Asadnia
- Department of Engineering, Macquarie University, Sydney, New South Wales, Australia
| | - Rita Henderson
- Biomass Lab, School of Chemical Engineering, University of New South Wales, Australia
| | - Robert A Taylor
- School of Mechanical and Manufacturing Engineering, University of New South Wales, Australia; School of Photovoltaic and Renewable Energy Engineering, University of New South Wales, Australia
| | - Majid E Warkiani
- School of Biomedical Engineering, University of Technology Sydney, Australia; Center for Health Technologies, University of Technology Sydney, Australia.
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15
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16
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Valkonen S, van der Pol E, Böing A, Yuana Y, Yliperttula M, Nieuwland R, Laitinen S, Siljander P. Biological reference materials for extracellular vesicle studies. Eur J Pharm Sci 2017; 98:4-16. [DOI: 10.1016/j.ejps.2016.09.008] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2016] [Revised: 09/06/2016] [Accepted: 09/06/2016] [Indexed: 01/05/2023]
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17
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Vander Wiel JB, Mikulicz JD, Boysen MR, Hashemi N, Kalgren P, Nauman L, Baetzold SJ, Powell GG, He Q, Hashemi NN. Characterization of Chlorella vulgaris and Chlorella protothecoides using multi-pixel photon counters in a 3D focusing optofluidic system. RSC Adv 2017. [DOI: 10.1039/c6ra25837a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Abstract
A new type of multi-pixel photon counter was employed to miniaturize the device, lower its power consumption, and make it insensitive to magnetic fields.
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Affiliation(s)
| | | | | | - Niloofar Hashemi
- Department of Materials Science and Engineering
- Sharif University of Technology
- Tehran
- Iran
| | - Patrick Kalgren
- Department of Mechanical Engineering
- Iowa State University
- Ames
- USA
| | - Levi M. Nauman
- Department of Mechanical Engineering
- Iowa State University
- Ames
- USA
| | - Seth J. Baetzold
- Department of Mechanical Engineering
- Iowa State University
- Ames
- USA
| | | | - Qing He
- Department of Mechanical Engineering
- Iowa State University
- Ames
- USA
| | - Nicole Nastaran Hashemi
- Department of Mechanical Engineering
- Iowa State University
- Ames
- USA
- Center for Advanced Host Defense Immunobiotics and Translational Comparative Medicine
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18
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Sharifi F, Patel BB, Dzuilko AK, Montazami R, Sakaguchi DS, Hashemi N. Polycaprolactone Microfibrous Scaffolds to Navigate Neural Stem Cells. Biomacromolecules 2016; 17:3287-3297. [PMID: 27598294 DOI: 10.1021/acs.biomac.6b01028] [Citation(s) in RCA: 52] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Fibrous scaffolds have shown promise in tissue engineering due to their ability to improve cell alignment and migration. In this paper, poly(ε-caprolactone) (PCL) fibers are fabricated in different sizes using a microfluidic platform. By using this approach, we demonstrated considerable flexibility in ability to control the size of the fibers. It was shown that the average diameter of the fibers was obtained in the range of 2.6-36.5 μm by selecting the PCL solution flow rate from 1 to 5 μL min-1 and the sheath flow rate from 20 to 400 μL min-1 in the microfluidic channel. The microfibers were used to create 3D microenvironments in order to investigate growth and differentiation of adult hippocampal stem/progenitor cells (AHPCs) in vitro. The results indicated that the 3D topography of the PCL substrates, along with chemical (extracellular matrix) guidance cues supported the adhesion, survival, and differentiation of the AHPCs. Additionally, it was found that the cell deviation angle for 44-66% of cells on different types of fibers was less than 10°. This reveals the functionality of PCL fibrous scaffolds for cell alignment important in applications such as reconnecting serious nerve injuries and guiding the direction of axon growth as well as regenerating blood vessels, tendons, and muscle tissue.
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Affiliation(s)
- Farrokh Sharifi
- Department of Mechanical Engineering, ‡Department of Genetics, Development and Cell Biology and Neuroscience, and §Center of Advanced Host Defense Immunobiotics and Translational Medicine, Iowa State University , Ames, Iowa 50011, United States
| | - Bhavika B Patel
- Department of Mechanical Engineering, ‡Department of Genetics, Development and Cell Biology and Neuroscience, and §Center of Advanced Host Defense Immunobiotics and Translational Medicine, Iowa State University , Ames, Iowa 50011, United States
| | - Adam K Dzuilko
- Department of Mechanical Engineering, ‡Department of Genetics, Development and Cell Biology and Neuroscience, and §Center of Advanced Host Defense Immunobiotics and Translational Medicine, Iowa State University , Ames, Iowa 50011, United States
| | - Reza Montazami
- Department of Mechanical Engineering, ‡Department of Genetics, Development and Cell Biology and Neuroscience, and §Center of Advanced Host Defense Immunobiotics and Translational Medicine, Iowa State University , Ames, Iowa 50011, United States
| | - Donald S Sakaguchi
- Department of Mechanical Engineering, ‡Department of Genetics, Development and Cell Biology and Neuroscience, and §Center of Advanced Host Defense Immunobiotics and Translational Medicine, Iowa State University , Ames, Iowa 50011, United States
| | - Nastaran Hashemi
- Department of Mechanical Engineering, ‡Department of Genetics, Development and Cell Biology and Neuroscience, and §Center of Advanced Host Defense Immunobiotics and Translational Medicine, Iowa State University , Ames, Iowa 50011, United States
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19
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He PJW, Katis IN, Eason RW, Sones CL. Laser direct-write for fabrication of three-dimensional paper-based devices. LAB ON A CHIP 2016; 16:3296-303. [PMID: 27436100 DOI: 10.1039/c6lc00789a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
We report the use of a laser-based direct-write (LDW) technique that allows the design and fabrication of three-dimensional (3D) structures within a paper substrate that enables implementation of multi-step analytical assays via a 3D protocol. The technique is based on laser-induced photo-polymerisation, and through adjustment of the laser writing parameters such as the laser power and scan speed we can control the depths of hydrophobic barriers that are formed within a substrate which, when carefully designed and integrated, produce 3D flow paths. So far, we have successfully used this depth-variable patterning protocol for stacking and sealing of multi-layer substrates, for assembly of backing layers for two-dimensional (2D) lateral flow devices and finally for fabrication of 3D devices. Since the 3D flow paths can also be formed via a single laser-writing process by controlling the patterning parameters, this is a distinct improvement over other methods that require multiple complicated and repetitive assembly procedures. This technique is therefore suitable for cheap, rapid and large-scale fabrication of 3D paper-based microfluidic devices.
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Affiliation(s)
- P J W He
- Optoelectronics Research Centre, University of Southampton, Highfield, Southampton, SO17 1BJ UK.
| | - I N Katis
- Optoelectronics Research Centre, University of Southampton, Highfield, Southampton, SO17 1BJ UK.
| | - R W Eason
- Optoelectronics Research Centre, University of Southampton, Highfield, Southampton, SO17 1BJ UK.
| | - C L Sones
- Optoelectronics Research Centre, University of Southampton, Highfield, Southampton, SO17 1BJ UK.
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20
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Sharifi F, Kurteshi D, Hashemi N. Designing highly structured polycaprolactone fibers using microfluidics. J Mech Behav Biomed Mater 2016; 61:530-540. [PMID: 27136089 DOI: 10.1016/j.jmbbm.2016.04.005] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2015] [Revised: 04/02/2016] [Accepted: 04/05/2016] [Indexed: 11/17/2022]
Abstract
Microfibers are becoming increasingly important for biomedical applications such as regenerative medicine and tissue engineering. We have used a microfluidic approach to create polycaprolactone (PCL) microfibers in a controlled manner. Through the variations of the sheath fluid flow rate and PCL concentration in the core solution, the morphology of the microfibers and their cross-sections can be tuned. The microfibers were made using PCL concentrations of 2%, 5%, and 8% in the core fluid with a wide range of sheath-to-core flow rate ratios from 120:5µL/min to 10:5µL/min, respectively. The results revealed that the mechanical properties of the PCL microfibers made using microfluidic approach were significantly improved compared to the PCL microfibers made by other fiber fabrication methods. Additionally, it was demonstrated that by decreasing the flow rate ratio and increasing the PCL concentration, the size of the microfiber could be increased. Varying the sheath-to-core flow rate ratios from 40:5 to 10:5, the tensile stress at break, the tensile strain at break, and the Young׳s modulus were enhanced from 24.51MPa to 77.07MPa, 567% to 1420%, and 247.25MPa to 539.70MPa, respectively. The porosity and roughness of microfiber decreased when the PCL concentration increased from 2% to 8%, whereas changing the flow rate ratio did not have considerable impact on the microfiber roughness.
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Affiliation(s)
- Farrokh Sharifi
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA
| | - Diamant Kurteshi
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA
| | - Nastaran Hashemi
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA; Center for Advanced Host Defense Immunobiotics and Translational Comparative Medicine, Iowa State University, Ames, IA 50011, USA.
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21
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Zhang Y, Watts BR, Guo T, Zhang Z, Xu C, Fang Q. Optofluidic Device Based Microflow Cytometers for Particle/Cell Detection: A Review. MICROMACHINES 2016; 7:mi7040070. [PMID: 30407441 PMCID: PMC6189758 DOI: 10.3390/mi7040070] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/01/2016] [Revised: 04/04/2016] [Accepted: 04/12/2016] [Indexed: 11/28/2022]
Abstract
Optofluidic devices combining micro-optical and microfluidic components bring a host of new advantages to conventional microfluidic devices. Aspects, such as optical beam shaping, can be integrated on-chip and provide high-sensitivity and built-in optical alignment. Optofluidic microflow cytometers have been demonstrated in applications, such as point-of-care diagnostics, cellular immunophenotyping, rare cell analysis, genomics and analytical chemistry. Flow control, light guiding and collecting, data collection and data analysis are the four main techniques attributed to the performance of the optofluidic microflow cytometer. Each of the four areas is discussed in detail to show the basic principles and recent developments. 3D microfabrication techniques are discussed in their use to make these novel microfluidic devices, and the integration of the whole system takes advantage of the miniaturization of each sub-system. The combination of these different techniques is a spur to the development of microflow cytometers, and results show the performance of many types of microflow cytometers developed recently.
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Affiliation(s)
- Yushan Zhang
- School of Biomedical Engineering, McMaster University, 1280 Main Street West, Hamilton, ON L8S 4L8, Canada.
| | - Benjamin R Watts
- ArtIC Photonics, 260 Terence Matthews Cres, Ottawa, ON K2M 2C7, Canada.
| | - Tianyi Guo
- School of Biomedical Engineering, McMaster University, 1280 Main Street West, Hamilton, ON L8S 4L8, Canada.
| | - Zhiyi Zhang
- Information and Communication Technologies, National Research Council of Canada, 1200 Montreal Road, Ottawa, ON K1A 0R6, Canada.
| | - Changqing Xu
- Department of Engineering Physics, McMaster University, 1280 Main Street West, Hamilton, ON L8S 4L8, Canada.
| | - Qiyin Fang
- Department of Engineering Physics, McMaster University, 1280 Main Street West, Hamilton, ON L8S 4L8, Canada.
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22
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Ehgartner D, Herwig C, Neutsch L. At-line determination of spore inoculum quality in Penicillium chrysogenum bioprocesses. Appl Microbiol Biotechnol 2016; 100:5363-73. [DOI: 10.1007/s00253-016-7319-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2015] [Revised: 01/11/2016] [Accepted: 01/13/2016] [Indexed: 11/30/2022]
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23
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Caplin JD, Granados NG, James MR, Montazami R, Hashemi N. Microfluidic Organ-on-a-Chip Technology for Advancement of Drug Development and Toxicology. Adv Healthc Mater 2015; 4:1426-50. [PMID: 25820344 DOI: 10.1002/adhm.201500040] [Citation(s) in RCA: 125] [Impact Index Per Article: 13.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2015] [Revised: 02/18/2015] [Indexed: 01/09/2023]
Abstract
In recent years, the exploitation of phenomena surrounding microfluidics has seen an increase in popularity, as researchers have found a way to use their unique properties to create superior design alternatives. One such application is representing the properties and functions of different organs on a microscale chip for the purpose of drug testing or tissue engineering. With the introduction of "organ-on-a-chip" systems, researchers have proposed various methods on various organ-on-a-chip systems to mimic their in vivo counterparts. In this article, a systematic approach is taken to review current technologies pertaining to organ-on-a-chip systems. Design processes with attention to the particular instruments, cells, and materials used are presented.
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Affiliation(s)
- Jeremy D. Caplin
- Department of Mechanical Engineering; Iowa State University; Ames IA 50011 USA
| | - Norma G. Granados
- Department of Mechanical Engineering; Iowa State University; Ames IA 50011 USA
| | - Myra R. James
- Department of Mechanical Engineering; Iowa State University; Ames IA 50011 USA
| | - Reza Montazami
- Department of Mechanical Engineering; Iowa State University; Ames IA 50011 USA
- Center for Advanced Host Defense Immunobiotics and Translational Comparative Medicine; Iowa State University; Ames IA 50011 USA
| | - Nastaran Hashemi
- Department of Mechanical Engineering; Iowa State University; Ames IA 50011 USA
- Center for Advanced Host Defense Immunobiotics and Translational Comparative Medicine; Iowa State University; Ames IA 50011 USA
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24
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Asrar P, Sucur M, Hashemi N. Multi-Pixel Photon Counters for Optofluidic Characterization of Particles and Microalgae. BIOSENSORS-BASEL 2015; 5:308-18. [PMID: 26075506 PMCID: PMC4493551 DOI: 10.3390/bios5020308] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/30/2015] [Accepted: 06/09/2015] [Indexed: 11/16/2022]
Abstract
We have developed an optofluidic biosensor to study microscale particles and different species of microalgae. The system is comprised of a microchannel with a set of chevron-shaped grooves. The chevrons allows for hydrodynamic focusing of the core stream in the center using a sheath fluid. The device is equipped with a new generation of highly sensitive photodetectors, multi-pixel photon counter (MPPC), with high gain values and an extremely small footprint. Two different sizes of high intensity fluorescent microspheres and three different species of algae (Chlamydomonas reinhardtii strain 21 gr, Chlamydomonas suppressor, and Chlorella sorokiniana) were studied. The forward scattering emissions generated by samples passing through the interrogation region were carried through a multimode fiber, located in 135 degree with respect to the excitation fiber, and detected by a MPPC. The signal outputs obtained from each sample were collected using a data acquisition system and utilized for further statistical analysis. Larger particles or cells demonstrated larger peak height and width, and consequently larger peak area. The average signal output (integral of the peak) for Chlamydomonas reinhardtii strain 21 gr, Chlamydomonas suppressor, and Chlorella sorokiniana falls between the values found for the 3.2 and 10.2 μm beads. Different types of algae were also successfully characterized.
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Affiliation(s)
- Pouya Asrar
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA.
| | - Marta Sucur
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA.
| | - Nastaran Hashemi
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA.
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25
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Hu Z, Glidle A, Ironside C, Cooper JM, Yin H. An integrated microspectrometer for localised multiplexing measurements. LAB ON A CHIP 2015; 15:283-289. [PMID: 25367674 DOI: 10.1039/c4lc00952e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
We describe the development of an integrated lensed Arrayed Waveguide Grating (AWG) microspectrometer for localized multiplexing fluorescence measurements. The device, which has a footprint that is only 1 mm wide and 1 cm long, is capable of spectroscopic measurements on chip. Multiple fluorescence signals were measured simultaneously based upon simple intensity readouts from a CCD camera. We also demonstrate the integration of the AWG spectrometer with a microfluidic platform using a lensing function to confine the beam shape for focused illumination. This capability enhances signal collection, gives better spatial resolution, and provides a route for the analysis of small volume samples (e.g. cells) in flow. To show these capabilities we developed a novel "bead-AWG" platform with which we demonstrate localized multiplexed fluorescence detection either simultaneously or successively. Such an integrated system provides the basis for a portable system capable of optical detection of multi-wavelength fluorescence from a single defined location.
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Affiliation(s)
- Zhixiong Hu
- Division of Biomedical Engineering, School of Engineering, University of Glasgow, Glasgow, UK.
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26
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Evaluation of an easy and affordable flow cytometer for volumetric haematopoietic stem cell counting. BLOOD TRANSFUSION = TRASFUSIONE DEL SANGUE 2014; 12:416-20. [PMID: 24887218 DOI: 10.2450/2014.0198-13] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Received: 07/17/2013] [Accepted: 11/19/2013] [Indexed: 11/21/2022]
Abstract
BACKGROUND Accurate estimation of haematopoietic stem cell (HSC) counts by flow cytometry may be difficult in laboratories in which sophisticated equipment and staff with specific expertise are not available. Affordable flow cytometers that can perform basic functions may help to overcome these difficulties. In this study we compared HSC and leucocyte counts determined by volumetric and bead-based protocols performed with the small, low-cost Accuri(®) C6, with those obtained with two gold-standard instruments, the four-colour FACSCalibur(®) and the eight-colour FACSCantoII(®), our reference flow cytometers. MATERIALS AND METHODS With the three cytometers we tested, in parallel, 111 consecutive samples from cord blood, peripheral blood from patients with myelofibrosis and myeloproliferative syndromes, fresh and thawed HSC collected by apheresis and bone marrow products. The findings were compared with one-way ANOVA, Bland-Altman analysis and linear regression. RESULTS The results of HSC and leucocyte enumeration by the three devices were strongly correlated (r(2)>0.99; p<0.0001). ANOVA performed on different subgroups of samples did not reveal significant differences between HSC count determined by the C6 bead-based and reference flow cytometers in any of the subgroups. Regarding the C6 volumetric protocol, a statistically significant difference was observed only in the cord blood subgroup. Time for instrument set-up, calibration and analysis was slightly longer with Accuri(®) C6 (40 min) than with FACSCantoII(®) (30 min). DISCUSSION Accuri(®) C6 is a reliable instrument for HSC enumeration in fresh samples, using both volumetric and bead-based approaches, although the volumetric protocol on cord blood samples needs to be improved. The Accuri(®) C6 is easy to use, does not require profound knowledge of flow cytometry and could be employed in an urgent setting. Its performance may be improved by more efficient calibration and shorter analysis time.
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27
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Sechi D, Greer B, Johnson J, Hashemi N. Three-Dimensional Paper-Based Microfluidic Device for Assays of Protein and Glucose in Urine. Anal Chem 2013; 85:10733-7. [DOI: 10.1021/ac4014868] [Citation(s) in RCA: 135] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Deidre Sechi
- Department of Mechanical
Engineering, Iowa State University, Ames, Iowa, United States
| | - Brady Greer
- Department of Mechanical
Engineering, Iowa State University, Ames, Iowa, United States
| | - Jesse Johnson
- Department of Mechanical
Engineering, Iowa State University, Ames, Iowa, United States
| | - Nastaran Hashemi
- Department of Mechanical
Engineering, Iowa State University, Ames, Iowa, United States
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28
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Watts BR, Zhang Z, Xu CQ, Cao X, Lin M. A method for detecting forward scattering signals on-chip with a photonic-microfluidic integrated device. BIOMEDICAL OPTICS EXPRESS 2013; 4:1051-60. [PMID: 23847731 PMCID: PMC3704087 DOI: 10.1364/boe.4.001051] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2013] [Revised: 03/19/2013] [Accepted: 04/16/2013] [Indexed: 05/04/2023]
Abstract
A photonic integrated microfluidic device is demonstrated to perform optical excitation and forward scatter collection all on-chip in a planar format. Integrated on-chip optics formed a tailored beam geometry for optimal excitation of particles while a special design modification allowed for on-chip forward collection with the beam shaping capabilities. A notch was placed in the lens system that caused a dark spot on the facet of a collection waveguide while not affecting the beam geometry at the point of interrogation. The modified device with the ability to form a 10 μm beam geometry was demonstrated to detect the forward scatter from blank 5 μm diameter polystyrene beads. Free-space collection of side scatter signals was performed simultaneously with the on-chip collection and the designs demonstrated and enhanced SNR while the reliability of detection was determined to be appropriate for many applications. Excellent performance was confirmed via a false positive rate of 0.4%, a missed events rate of 6.8%, and a coincident rate of 96.3% as determined between simultaneously performed free-space and on-chip detection schemes.
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Affiliation(s)
- Benjamin R. Watts
- Department of Engineering Physics, McMaster University, Hamilton, Ontario L8S 4L7, Canada
| | - Zhiyi Zhang
- Institute of Microstructural Science, National Research Council of Canada, Ottawa, Ontario K1A 0R6, Canada
| | - Chang-Qing Xu
- Department of Engineering Physics, McMaster University, Hamilton, Ontario L8S 4L7, Canada
| | - Xudong Cao
- Department of Chemical and Biological Engineering, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada
| | - Min Lin
- Ottawa Laboratory Fallowfield, Canadian Food Inspection Agency, Ottawa, Ontario, K2H 8P9, Canada
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29
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Pearl MR, Swanstrom JA, Bruckman LS, Richardson TL, Shaw TJ, Sosik HM, Myrick ML. Taxonomic classification of phytoplankton with multivariate optical computing, part III: demonstration. APPLIED SPECTROSCOPY 2013; 67:640-647. [PMID: 23735249 DOI: 10.1366/12-06785] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
We describe the automatic analysis of fluorescence tracks of phytoplankton recorded with a fluorescence imaging photometer. The optical components and construction of the photometer were described in Part I and Part II of this series in this issue. An algorithm first isolates tracks corresponding to a single phytoplankter transit in the nominal focal plane of a flow cell. Then, the fluorescence streaks in the track that correspond to individual optical elements on the filter wheel are identified. The fluorescence intensity of each streak is integrated and used to calculate ratios. This approach was tested using 853 fluorescence measurements of the coccolithophore Emiliania huxleyi and the diatom Thalassiosira pseudonana. Average intensity ratios for the two classes closely follow those predicted in Part I of this series, with a distribution of ratios in each class that is consistent with the signal-to-noise ratio calculations in Part II for single cells. No overlap of the two class ratios was observed, yielding perfect classification.
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Affiliation(s)
- Megan R Pearl
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC 29208, USA
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30
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Swanstrom JA, Bruckman LS, Pearl MR, Abernathy E, Richardson TL, Shaw TJ, Myrick ML. Taxonomic classification of phytoplankton with multivariate optical computing, part II: design and experimental protocol of a shipboard fluorescence imaging photometer. APPLIED SPECTROSCOPY 2013; 67:630-639. [PMID: 23735248 DOI: 10.1366/12-06784] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Differential pigmentation between phytoplankton allows use of fluorescence excitation spectroscopy for the discrimination and classification of different taxa. Here, we describe the design and performance of a fluorescence imaging photometer that exploits taxonomic differences for discrimination and classification. The fluorescence imaging photometer works by illuminating individual phytoplankton cells through an asynchronous spinning filter wheel, which produces bar code-like streaks in a fluorescence image. A filter position is covered with an opaque filter to create a reference dark position in the filter wheel rotation that is used to match each fluorescence streak with the corresponding filter. Fluorescence intensities of the imaged streaks are then analyzed for the purpose of spectral analysis, which allows taxonomic classification of the organism that produced the streaks. The theoretical performance and signal-to-noise ratio (SNR) specifications of these MOEs are described in Part I of this series. This report describes optical layout, flow cell design, magnification, depth of field, constraints on filter wheel and flow velocities, procedures for blank subtraction and flat-field correction, the measurement scheme of the instrument, and measurement of SNR as a measurement of filter wheel frequency. This is followed by an analysis of the sources of variance in measurements made by the photometer on the coccolithophore Emiliania huxleyi. We conclude that the SNR of E. huxleyi measurements is not limited by the sensitivity or noise attributes of the measurement system, but by dynamics in the fluorescence efficiency of the E. huxleyi cells. Even so, the minimum SNR requirements given in Part I for the instrument are met.
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Affiliation(s)
- Joseph A Swanstrom
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, USA
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31
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Yang J, Ghobadian S, Goodrich PJ, Montazami R, Hashemi N. Miniaturized biological and electrochemical fuel cells: challenges and applications. Phys Chem Chem Phys 2013; 15:14147-61. [DOI: 10.1039/c3cp50804h] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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32
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Fan YJ, Wu YC, Chen Y, Kung YC, Wu TH, Huang KW, Sheen HJ, Chiou PY. Three dimensional microfluidics with embedded microball lenses for parallel and high throughput multicolor fluorescence detection. BIOMICROFLUIDICS 2013; 7:44121. [PMID: 24404054 PMCID: PMC3765297 DOI: 10.1063/1.4818944] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2013] [Accepted: 08/07/2013] [Indexed: 05/11/2023]
Abstract
We report a 3D microfluidic device with 32 detection channels and 64 sheath flow channels and embedded microball lens array for high throughput multicolor fluorescence detection. A throughput of 358 400 cells/s has been accomplished. This device is realized by utilizing solid immersion micro ball lens arrays for high sensitivity and parallel fluorescence detection. High refractive index micro ball lenses (n = 2.1) are embedded underneath PDMS channels close to cell detection zones in channels. This design permits patterning high N.A. micro ball lenses in a compact fashion for parallel fluorescence detection on a small footprint device. This device also utilizes 3D microfluidic fabrication to address fluid routing issues in two-dimensional parallel sheath focusing and allows simultaneous pumping of 32 sample channels and 64 sheath flow channels with only two inlets.
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Affiliation(s)
- Y J Fan
- Mechanical and Aerospace Engineering Department, University of California Los Angeles, Los Angeles, California 90095, USA ; Institute of Applied Mechanics, National Taiwan University, Taipei 10617, Taiwan
| | - Y C Wu
- Mechanical and Aerospace Engineering Department, University of California Los Angeles, Los Angeles, California 90095, USA
| | - Y Chen
- Mechanical and Aerospace Engineering Department, University of California Los Angeles, Los Angeles, California 90095, USA
| | - Y C Kung
- Mechanical and Aerospace Engineering Department, University of California Los Angeles, Los Angeles, California 90095, USA
| | - T H Wu
- Mechanical and Aerospace Engineering Department, University of California Los Angeles, Los Angeles, California 90095, USA ; Department of Pathology and Laboratory Medicine, University of California Los Angeles, Los Angeles, California 90095, USA
| | - K W Huang
- Mechanical and Aerospace Engineering Department, University of California Los Angeles, Los Angeles, California 90095, USA
| | - H J Sheen
- Institute of Applied Mechanics, National Taiwan University, Taipei 10617, Taiwan
| | - P Y Chiou
- Mechanical and Aerospace Engineering Department, University of California Los Angeles, Los Angeles, California 90095, USA ; Department of Bioengineering, University of California Los Angeles, Los Angeles, California 90095, USA
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Martini J, Recht MI, Huck M, Bern MW, Johnson NM, Kiesel P. Time encoded multicolor fluorescence detection in a microfluidic flow cytometer. LAB ON A CHIP 2012; 12:5057-62. [PMID: 23044636 PMCID: PMC3485422 DOI: 10.1039/c2lc40515f] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
We describe an optical detection technique that delivers high signal-to-noise discrimination to enable a multi-parameter flow cytometer that combines high performance, robustness, compactness and low cost. The enabling technique is termed "spatially modulated detection" and generates a time-dependent signal as a continuously fluorescing (bio-) particle traverses an optical transmission pattern along the fluidic channel. Correlating the detected signal with the expected transmission pattern achieves high discrimination of the particle signal from background noise. Additionally, the particle speed and its fluorescence emission characteristics are deduced from the correlation analysis. Our method uses a large excitation/emission volume along the fluidic channel in order to increase the total flux of fluorescence light that originates from a particle while requiring minimal optical alignment. Despite the large excitation/detection volume, the mask pattern enables a high spatial resolution in the micron range. This allows for detection and characterization of particles with a separation (in flow direction) comparable to the dimension of individual particles. In addition, the concept is intrinsically tolerant of non-encoded background fluorescence originating from fluorescent components in solution, fluorescing components of the chamber and contaminants on its surface. The optical detection technique is illustrated with experimental results of multicolor detection with a single large area detector by filtering fluorescence emission of different particles through a patterned color mask. Thereby the particles' fluorescence emission spectrum is encoded in a time dependent intensity signal and color information can be extracted from the correlation analysis. The multicolor detection technique is demonstrated by differentiation of micro-beads loaded with PE (Phycoerythrin) and PE-Cy5 that are excited at 532 nm.
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Affiliation(s)
- Joerg Martini
- Palo Alto Research Center, 3333 Coyote Hill Rd., Palo Alto, CA 94304, USA.
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34
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Schaap A, Rohrlack T, Bellouard Y. Lab on a chip technologies for algae detection: a review. JOURNAL OF BIOPHOTONICS 2012; 5:661-672. [PMID: 22693123 DOI: 10.1002/jbio.201200051] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2012] [Revised: 04/19/2012] [Accepted: 04/25/2012] [Indexed: 06/01/2023]
Abstract
Over the last few decades, lab on a chip technologies have emerged as powerful tools for high-accuracy diagnosis with minute quantities of liquid and as tools for exploring cell properties in general. In this paper, we present a review of the current status of this technology in the context of algae detection and monitoring. We start with an overview of the detection methods currently used for algae monitoring, followed by a review of lab on a chip devices for algae detection and classification, and then discuss a case study based on our own research activities. We conclude with a discussion on future challenges and motivations for algae-oriented lab on a chip technologies.
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Affiliation(s)
- Allison Schaap
- Mechanical Engineering Department, Eindhoven University of Technology, The Netherlands
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35
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Revzin A, Maverakis E, Chang HC. Biosensors for immune cell analysis-A perspective. BIOMICROFLUIDICS 2012; 6:21301-2130113. [PMID: 22655003 PMCID: PMC3360707 DOI: 10.1063/1.4706845] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2012] [Accepted: 04/10/2012] [Indexed: 05/14/2023]
Abstract
Massively parallel analysis of single immune cells or small immune cell colonies for disease detection, drug screening, and antibody production represents a "killer app" for the rapidly maturing microfabrication and microfluidic technologies. In our view, microfabricated solid-phase and flow cytometry platforms of the future will be complete with biosensors and electrical/mechanical/optical actuators and will enable multi-parametric analysis of cell function, real-time detection of secreted signals, and facile retrieval of cells deemed interesting.
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36
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Schaap A, Rohrlack T, Bellouard Y. Optical classification of algae species with a glass lab-on-a-chip. LAB ON A CHIP 2012; 12:1527-1532. [PMID: 22395427 DOI: 10.1039/c2lc21091f] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
The identification of submillimetre phytoplankton is important for monitoring environmental and climate changes, as well as evaluating water for health reasons. Current standard methods for phytoplankton species identification require sample collection and ex situ analysis, an expensive procedure which prevents the rapid identification of phytoplankton outbreaks. To address this, we use a glass-based microchip with a microchannel and waveguide included on a monolithic substrate, and demonstrate its use for identifying phytoplankton species. The microchannel and the specimens inside it are illuminated by laser light from the curved waveguide as algae-laden water is passed through the channel. The intensity distribution of the light collected from the biochip is monitored with an external photodetector. Here, we demonstrate that the characteristics of the photodiode signal from this simple and robust system can provide significant and useful information as to the contents of the channel. Specifically, we show first that the signals are correlated to the size of algae cells. Using a pattern-matching neural network, we demonstrate the successful classification of five algae species with an average 78% positive identification rate. Furthermore, as a proof-of-concept for field-operation, we show that the chip can be used to distinguish between detritus in field-collected water and the toxin-producing cyanobacterium Cyanothece.
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Affiliation(s)
- Allison Schaap
- Department of Mechanical Engineering, Eindhoven University of Technology, Postbus 513, 5600MB Eindhoven, The Netherlands
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37
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Wagner LT, Yang J, Ghobadian S, Montazami R, Hashemi N. A Microfluidic Reactor for Energy Applications. ACTA ACUST UNITED AC 2012. [DOI: 10.4236/ojab.2012.13003] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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38
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Golden JP, Justin GA, Nasir M, Ligler FS. Hydrodynamic focusing--a versatile tool. Anal Bioanal Chem 2011; 402:325-35. [PMID: 21952728 DOI: 10.1007/s00216-011-5415-3] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2011] [Revised: 09/09/2011] [Accepted: 09/11/2011] [Indexed: 11/29/2022]
Abstract
The control of hydrodynamic focusing in a microchannel has inspired new approaches for microfluidic mixing, separations, sensors, cell analysis, and microfabrication. Achieving a flat interface between the focusing and focused fluids is dependent on Reynolds number and device geometry, and many hydrodynamic focusing systems can benefit from this understanding. For applications where a specific cross-sectional shape is desired for the focused flow, advection generated by grooved structures in the channel walls can be used to define the shape of the focused flow. Relative flow rates of the focused flow and focusing streams can be manipulated to control the cross-sectional area of the focused flows. This paper discusses the principles for defining the shape of the interface between the focused and focusing fluids and provides examples from our lab that use hydrodynamic focusing for impedance-based sensors, flow cytometry, and microfabrication to illustrate the breadth of opportunities for introducing new capabilities into microfluidic systems. We evaluate each example for the advantages and limitations integral to utilization of hydrodynamic focusing for that particular application.
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Affiliation(s)
- Joel P Golden
- Naval Research Laboratory, Center for Bio/Molecular Science and Engineering, Washington, DC 20375, USA
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Erickson JS, Hashemi N, Sullivan JM, Weidemann AD, Ligler FS. In Situ Phytoplankton Analysis: There’s Plenty of Room at the Bottom. Anal Chem 2011; 84:839-50. [DOI: 10.1021/ac201623k] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jeffrey S. Erickson
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Code 6900, Washington, D.C. 20375-5438, United States
| | - Nastaran Hashemi
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Code 6900, Washington, D.C. 20375-5438, United States
| | - James M. Sullivan
- WET Laboratories, Inc., Department of Research, 70 Dean Knauss Drive, Narragansett, Rhode Island 02882, United States
| | - Alan D. Weidemann
- Hydro-Optics, Sensors, and Systems Section, Naval Research Laboratory, Code 7333, Stennis Space Center, Mississippi 39529-5004, United States
| | - Frances S. Ligler
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Code 6900, Washington, D.C. 20375-5438, United States
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40
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Hashemi N, Erickson JS, Golden JP, Ligler FS. Optofluidic characterization of marine algae using a microflow cytometer. BIOMICROFLUIDICS 2011; 5:32009-320099. [PMID: 22662031 PMCID: PMC3364819 DOI: 10.1063/1.3608136] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2011] [Accepted: 05/03/2011] [Indexed: 05/05/2023]
Abstract
The effects of global warming, pollution in river effluents, and changing ocean currents can be studied by characterizing variations in phytoplankton populations. We demonstrate the design and fabrication of a Microflow Cytometer for characterization of phytoplankton. Guided by chevron-shaped grooves on the top and bottom of a microfluidic channel, two symmetric sheath streams wrap around a central sample stream and hydrodynamically focus it in the center of the channel. The lasers are carefully chosen to provide excitation light close to the maximum absorbance wavelengths for the intrinsic fluorophores chlorophyll and phycoerythrin, and the excitation light is coupled to the flow cytometer through the use of an optical fiber. Fluorescence and light scatter are collected using two multimode optical fibers placed at 90-degree angles with respect to the excitation fiber. Light emerging from these collection fibers is directed through optical bandpass filters into photomultiplier tubes. The cytometer measured the optical and side scatter properties of Karenia b., Synechococcus sp., Pseudo-Nitzchia, and Alexandrium. The effect of the sheath-to-sample flow-rate ratio on the light scatter and fluorescence of these marine microorganisms was investigated. Reducing the sample flow rate from 200 μL/min to 10 μL/min produced a more tightly focused sample stream and less heterogeneous signals.
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Affiliation(s)
- Nastaran Hashemi
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA
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