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Sulthana SF, Iqbal UM, Suseela SB, Anbazhagan R, Chinthaginjala R, Chitathuru D, Ahmad I, Kim TH. Electrochemical Sensors for Heavy Metal Ion Detection in Aqueous Medium: A Systematic Review. ACS OMEGA 2024; 9:25493-25512. [PMID: 38911761 PMCID: PMC11190924 DOI: 10.1021/acsomega.4c00933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Revised: 05/13/2024] [Accepted: 05/24/2024] [Indexed: 06/25/2024]
Abstract
Heavy metal ions (HMIs) are very harmful to the ecosystem when they are present in excess of the recommended limits. They are carcinogenic in nature and can cause serious health issues. So, it is important to detect the metal ions quickly and accurately. The metal ions arsenic (As3+), cadmium (Cd2+), chromium (Cr3+), lead (Pb2+), and mercury (Hg2+) are considered to be very toxic among other metal ions. Standard analytical methods like atomic absorption spectroscopy, atomic fluorescence spectroscopy, and X-ray fluorescence spectroscopy are used to detect HMIs. But these methods necessitate highly technical equipment and lengthy procedures with skilled personnel. So, electrochemical sensing methods are considered to be more advantageous because of their quick analysis with precision and simplicity to operate. They can detect a wide range of heavy metals providing real-time monitoring and are cost-effective and enable multiparametric detection. Various sensing applications necessitate severe regulation regarding the modification of electrode surfaces. Numerous nanomaterials such as graphene, carbon nanotubes, and metal nanoparticles have been extensively explored as interface materials in electrode modifiers. These nanoparticles offer excellent electrical conductivity, distinctive catalytic properties, and high surface area resulting in enhanced electrochemical performance. This review examines different HMI detection methods in an aqueous medium by an electrochemical sensing approach and studies the recent developments in interface materials for altering the electrodes.
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Affiliation(s)
- S. Fouziya Sulthana
- Department
of Mechatronics Engineering, College of Engineering and Technology, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu 603203, India
| | - U. Mohammed Iqbal
- Department
of Mechanical Engineering, College of Engineering and Technology, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu 603203, India
| | - Sreeja Balakrishnapillai Suseela
- Department
of Electronics and Communication Engineering, Centre for Medical Electronics,
College of Engineering, Anna University, Chennai, Tamil Nadu 600025, India
| | - Rajesh Anbazhagan
- School
of Electrical and Electronics Engineering, SASTRA University, Thanjavur 613401, India
| | - Ravikumar Chinthaginjala
- School
of Electronics Engineering, Vellore Institute
of Technology, Vellore 632014, Tamil Nadu, India
| | - Dhanamjayulu Chitathuru
- School of
Electrical Engineering, Vellore Institute
of Technology, Vellore 632014, Tamil Nadu, India
| | - Irfan Ahmad
- Department
of Clinical Laboratory Sciences, College of Applied Medical Science, King Khalid University, Abha 61421, Saudi Arabia
| | - Tai-hoon Kim
- School
of Electrical and Computer Engineering Yeosu Campus, Chonnam National University, 50 Daehak-ro, Yeosu-si, Jeollanam-do 59626, Republic of Korea
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2
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Zhu N, Wang K, Xiong D, Xiao J, Deng Y, Yang Z, Zhang Z. Efficient DNA walker guided by ordered cruciform-shaped DNA track for ultrasensitive and rapid electrochemical detection of lead ion. Anal Chim Acta 2024; 1302:342492. [PMID: 38580406 DOI: 10.1016/j.aca.2024.342492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 03/13/2024] [Accepted: 03/16/2024] [Indexed: 04/07/2024]
Abstract
The rational design of DNA tracks is an effective pathway to guide the autonomous movement and high-efficiency recognition in DNA walkers, showing outstanding advantages for the cascade signal amplification of electrochemical biosensors. However, the uncontrolled distance between two adjacent tracks on the electrode could increase the risk of derailment and interruption of the reaction. Hence, a novel four-way balanced cruciform-shaped DNA track (C-DNT) was designed as a structured pathway to improve the effectiveness and stability of the reaction in DNA walkers. In this work, two kinds of cruciform-shaped DNA were interconnected as a robust structure that could avoid the invalid movement of the designed DNA walker on the electrode. When hairpin H2 was introduced onto the electrode, the strand displacement reaction (SDR) effectively triggered movements of the DNA walker along the cruciform-shaped track while leaving ferrocene (Fc) on the electrode, leading to a significant enhancement of the electrochemical signal. This design enabled the walker to move in an excellent organized and controllable manner, thus enhancing the reaction speed and walking efficiency. Compared to other walkers moving on random tracks, the reaction time of the C-DNT-based DNA walker could be reduced to 20 min. Lead ion (Pb2+) was used as a model target to evaluate the analytical performance of this biosensor, which exhibited a low detection limit of 0.033 pM along with a wide detection ranging from 0.1 pM to 500 nM. This strategy presented a novel concept for designing a high-performance DNA walker-based sensing platform for the detection of contaminants.
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Affiliation(s)
- Nuanfei Zhu
- School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, China
| | - Kaixuan Wang
- School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, China
| | - Dinghui Xiong
- School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, China
| | - Jiaxuan Xiao
- School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, China
| | - Yibin Deng
- Medical Laboratory Science, The Affiliated Hospital of Youjiang Medical University for Nationalities, Baise, 533000, China; Key Laboratory of Clinical Molecular Diagnosis and Research for High Incidence Diseases in Western Guangxi, Guangxi, 533000, China.
| | - Zhugen Yang
- School of Water, Energy, and Environment, Cranfield University, Milton Keynes, MK43 0AL, UK
| | - Zhen Zhang
- School of the Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, China; Medical Laboratory Science, The Affiliated Hospital of Youjiang Medical University for Nationalities, Baise, 533000, China; Key Laboratory of Clinical Molecular Diagnosis and Research for High Incidence Diseases in Western Guangxi, Guangxi, 533000, China.
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3
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Han Y, Li F, Yang L, Guo X, Dong X, Niu M, Jiang Y, Li L, Li H, Sun Y. Imunocapture Magnetic Beads Enhanced and Ultrasensitive CRISPR-Cas13a-Assisted Electrochemical Biosensor for Rapid Detection of SARS-CoV-2. BIOSENSORS 2023; 13:597. [PMID: 37366962 DOI: 10.3390/bios13060597] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 05/22/2023] [Accepted: 05/27/2023] [Indexed: 06/28/2023]
Abstract
The rapid and ongoing spread of the coronavirus disease (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), emphasizes the urgent need for an easy and sensitive virus detection method. Here, we describe an immunocapture magnetic bead-enhanced electrochemical biosensor for ultrasensitive SARS-CoV-2 detection based on clustered regularly interspaced short palindromic repeats (CRISPR) and CRISPR-associated (Cas) proteins, collectively known as CRISPR-Cas13a technology. At the core of the detection process, low-cast and immobilization-free commercial screen-printed carbon electrodes are used to measure the electrochemical signal, while streptavidin-coated immunocapture magnetic beads are used to reduce the background noise signal and enhance detection ability by separating the excessive report RNA, and a combination of isothermal amplification methods in the CRISPR-Cas13a system is used for nucleic acid detection. The results showed that the sensitivity of the biosensor increased by two orders of magnitude when the magnetic beads were used. The proposed biosensor required approximately 1 h of overall processing time and demonstrated an ultrasensitive ability to detect SARS-CoV-2, which could be as low as 1.66 aM. Furthermore, owing to the programmability of the CRISPR-Cas13a system, the biosensor can be flexibly applied to other viruses, providing a new approach for powerful clinical diagnostics.
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Affiliation(s)
- Yao Han
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China
| | - Fan Li
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China
| | - Lan Yang
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China
| | - Xudong Guo
- Chinese PLA Center for Disease Control and Prevention, Beijing 102206, China
| | - Xue Dong
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China
| | - Mengwei Niu
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China
| | - Yaxuan Jiang
- College of Public Health, Zhengzhou University, Zhengzhou City 450001, China
| | - Lin Li
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China
| | - Hao Li
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China
| | - Yansong Sun
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing 100071, China
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4
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Jiang Y, Ding Q, Yuan R, Liu G, Yuan Y. Photoactive conjugated microporous polymer@C 60 with quencher on tailed Y-triangular DNA structure for high-performance signal-off photoelectrochemical biosensing. JOURNAL OF HAZARDOUS MATERIALS 2023; 457:131724. [PMID: 37257386 DOI: 10.1016/j.jhazmat.2023.131724] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Revised: 05/24/2023] [Accepted: 05/26/2023] [Indexed: 06/02/2023]
Abstract
Herein, we synthesized a conjugated microporous polymer (CMP) decorated C60 (CMP@C60) with high photoelectric conversion efficiency, in which continuously repeated donor-acceptor (D-A) π electron unit within one molecule of CMP on C60 could not only effectively increase the mobility of photogenerated carriers with improved electron transmission, but also constitute the cascade energy band matching with reduced electron-hole recombination. Based on the high-performance of CMP@C60 for producing exciting initial photoelectrochemical (PEC) signal, a sensitive signal-off sensing platform was designed for lead ion (Pb2+) assay by coupling with quencher methylene blue (MB) interacting on efficient long tailed Y-triangular DNA structure (LYTD). The proposed LYTD with a tripod structure could generate six long tails in situ on its side at the same time via a simple hybridization chain reaction (HCR), providing notably grooves on electrode to accommodate quencher MB to significantly depress the signal for sensitive detection of Pb2+. As a result, the proposed PEC biosensor revealed excellent analysis capability with a low detection limit of 0.3 fM (S/N = 3). Additionally, it also showed satisfactory stability in the detection of tap water samples, lake water samples and clinical serum samples, manifesting great application prospect in the areas of environmental pollutant detection.
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Affiliation(s)
- Ying Jiang
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, College of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China
| | - Qiao Ding
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, College of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China
| | - Ruo Yuan
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, College of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China
| | - Guangpeng Liu
- Chongqing Key Laboratory of Karst Environment, College of Geographical Sciences, Southwest University, Chongqing 400715, China
| | - Yali Yuan
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, College of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, China.
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5
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Liu D, Sun XM, Zhu L, Li CY. Using time-shared scanning optical tweezers assisted two-photon fluorescence imaging to establish a versatile CRISPR/Cas12a-mediated biosensor. Biosens Bioelectron 2023; 227:115158. [PMID: 36827793 DOI: 10.1016/j.bios.2023.115158] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Revised: 02/05/2023] [Accepted: 02/15/2023] [Indexed: 02/21/2023]
Abstract
Based on the admirable precision to identify target nucleic acids and the particular trans-cleavage feature, CRISPR/Cas12a system is a useful means to further improve the sensing accuracy and the design flexibility of fluorescence biosensors. However, the current construction concepts still suffer from insufficient sensitivity, unsuitable for complicated real samples and limited detection species. In this work, much efforts are achieved to address these obstacles. At first, we adopt a microsphere sustained signal enrichment, under which a home-made time-shared scanning optical tweezers assisted fluorescence imaging is employed to guarantee a stable excitation and also realize multiflux measurement. Furthermore, by taking advantage of the low background merit of the near-infrared light excited two-photon fluorescence, a commendable anti-interference capability is endowed to operate in complex media. After utilizing a functional DNA (e.g. aptamer and DNAzyme) regulated mediation pathway to respond non-nucleic acid analytes (alpha fetal protein and Pb2+), the newly-established CRISPR/Cas12a-mediated fluorescence biosensor is found to display favorable assay performance. More importantly, our analytical methodology can act as a versatile and reliable toolbox in various applications such as disease diagnosis and environmental analysis, propelling the development of CRISPR system in biosensing field.
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Affiliation(s)
- Da Liu
- Hubei Province Key Laboratory of Occupational Hazard Identification and Control, School of Public Health, Medical College, Wuhan University of Science and Technology, Wuhan, 430065, PR China
| | - Xiao-Ming Sun
- School of Basic Medical Sciences, Biomedical Research Institute, Hubei University of Medicine, Shiyan, 442000, PR China
| | - Lian Zhu
- School of Chemistry and Environmental Engineering, Wuhan Polytechnic University, Wuhan, 430023, PR China
| | - Cheng-Yu Li
- Hubei Province Key Laboratory of Occupational Hazard Identification and Control, School of Public Health, Medical College, Wuhan University of Science and Technology, Wuhan, 430065, PR China.
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6
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Recent progress in homogeneous electrochemical sensors and their designs and applications. Trends Analyt Chem 2022. [DOI: 10.1016/j.trac.2022.116712] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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7
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Ultrasenstive SERS biosensor based on Zn 2+ from ZnO nanoparticle assisted DNA enzyme amplification for detection of miRNA. Anal Chim Acta 2022; 1228:340340. [PMID: 36127003 DOI: 10.1016/j.aca.2022.340340] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Revised: 08/13/2022] [Accepted: 08/31/2022] [Indexed: 11/23/2022]
Abstract
In this work, a simple and sensitive SERS biosensor was proposed for ultrasensitive detecting miRNA 122 based on ZnO nanoparticle amplification strategy and the full utilization of DNA chain. Firstly, ZnO@S1/S2 and CoFe2O4@S3 complexes can flock together with the assistance of target miRNA. Accompanied with the incremental amount of miRNA, the quantity of ZnO@S1/S2 would increase. Therefore, a significant amplification capability can be obtained by converting ZnO complexes into Zn2+ with the assistance of HCl. In this case, the DNA chain S2 can be obtained by the ZnO dissolving. In addition, through a clever design, the obtained Zn2+ can be further utilized to induce DNA enzyme cycle amplification to cleave S5 into DNA chain which was similar with DNA S2. This step greatly avoided the waste of DNA chains and improved the utilization efficiency of DNA chains. The S2 and abundant S2 analogues can complement with S4 on the Raman sensing interface to imbed lots of Raman probe DOX for obtaining strong Raman signal. By this way, with the increased number of miRNA, the S2 and abundant S2 analogues would increase, so the amount of DOX would increase to produce strong Raman signal to quantitatively detect target miRNA. As a result, this SERS biosensor based on Zn+ amplification and high utilization efficiency of DNA chain can obtain a low detection limit of 6.82 aM and wide linear range from 10 aM to 10 pM, which shown great potential in the clinical application and medical diagnosis.
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8
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Catalytic hairpin assembly assisted target-dependent DNAzyme nanosystem coupled with AgPt@Thi for the detection of lead ion. Anal Chim Acta 2022; 1205:339735. [DOI: 10.1016/j.aca.2022.339735] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2022] [Revised: 03/14/2022] [Accepted: 03/15/2022] [Indexed: 11/19/2022]
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9
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Recent advances in the construction of functional nucleic acids with isothermal amplification for heavy metal ions sensor. Microchem J 2022. [DOI: 10.1016/j.microc.2021.107077] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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10
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Wang Y, Sun W, Wang J, Wang X, Xu Y, Guo Y, Wang Y, Zhang M, Jiang L, Liu S, Huang J. Ultrasensitive Uracil-DNA Glycosylase Activity Assay and Its Inhibitor Screening Based on Primer Remodeling Jointly via Repair Enzyme and Polymerase. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:3868-3875. [PMID: 35298179 DOI: 10.1021/acs.langmuir.2c00115] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The development of isothermal nucleic acid amplification techniques has great significance for highly sensitive biosensing in modern biology and biomedicine. A facile and robust exponential rolling circle amplification (RCA) strategy is proposed based on primer-remodeling amplification jointly via a repair enzyme and polymerase, and uracil-DNA glycosylase (UDG) is selected as a model analyte. Two kinds of complexes, complex I and complex II, are preprepared by hybridizing a circular template (CT) with a uracil-containing hairpin probe and tetrahydrofuran abasic site mimic (AP site)-embedded fluorescence-quenched probe (AFP), respectively. The target UDG specifically binds to complex I, resulting in the generation of an AP site, followed by cleavage via endonuclease IV (Endo IV) and the successive trimming of unmatched 3' terminus via phi29 DNA polymerase, thus producing a useable primer-CT complex that actuates the primary RCA. Then, numerous complex II anneal with the first-generation RCA product (RP), generating a complex II-RP assembly containing AP sites within the DNA duplex. With the aid of Endo IV and phi29, AFP, as a pre-primer in complex II, is converted into a mature primer to initiate additional rounds of RCA. So, countless AFPs are cleaved, releasing remarkably strong fluorescent signals. The biosensor is demonstrated to enable rapid and accurate detection of the UDG activity with an improved detection limit as low as 4.7 × 10-5 U·mL-1. Moreover, this biosensor is successfully applied for UDG inhibitor screening and complicated biological samples analysis. Compared to the previous exponential RCA methods, our proposed strategy offers additional advantages, including excellent stability, optional design of CT, and simplified operating steps. Therefore, this proposed strategy may create a useful and practical platform for ultrasensitive detection of low levels of analytes in clinical diagnosis and fundamental biomedicine research.
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Affiliation(s)
- Yu Wang
- School of Biological Sciences and Technology, University of Jinan, Jinan 250022, P. R. China
| | - Wenyu Sun
- School of Biological Sciences and Technology, University of Jinan, Jinan 250022, P. R. China
| | - Jingfeng Wang
- College of Chemistry and Molecular Sciences, Wuhan University, Wuhan 430072, P. R. China
| | - Xu Wang
- Shandong Institute of Metrology and Science, Jinan 250014, P. R. China
| | - Yicheng Xu
- School of Biological Sciences and Technology, University of Jinan, Jinan 250022, P. R. China
| | - Yuanzhen Guo
- School of Biological Sciences and Technology, University of Jinan, Jinan 250022, P. R. China
| | - Yeru Wang
- School of Biological Sciences and Technology, University of Jinan, Jinan 250022, P. R. China
| | - Manru Zhang
- School of Water Conservancy and Environment, University of Jinan, Jinan 250022, P. R. China
| | - Long Jiang
- School of Water Conservancy and Environment, University of Jinan, Jinan 250022, P. R. China
| | - Su Liu
- School of Water Conservancy and Environment, University of Jinan, Jinan 250022, P. R. China
| | - Jiadong Huang
- School of Biological Sciences and Technology, University of Jinan, Jinan 250022, P. R. China
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Ma J, Bai W, Zheng J. A novel self-cleaning electrochemical biosensor integrating copper porphyrin-derived metal-organic framework nanofilms, G-quadruplex, and DNA nanomotors for achieving cyclic detection of lead ions. Biosens Bioelectron 2022; 197:113801. [PMID: 34814032 DOI: 10.1016/j.bios.2021.113801] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Revised: 06/24/2021] [Accepted: 11/13/2021] [Indexed: 02/08/2023]
Abstract
A self-cleaning electrochemical biosensor based on two-dimensional Cu-porphyrin (Cu-TCPP) metal-organic framework nanofilms, novel super G-quadruplex (G4), and DNA nanomotors was developed for the cyclic detection of Pb2+ ions. The Cu-TCPP framework with inherent peroxidase activity can create an ultra-thin nanofilm that functioned as a carrier to support the metastable G4 comprising four individual DNA strands. The introduction of Pb2+ and the intercalation of hemin can help it to form stable G4-hemin DNAzymes, which exhibits strong catalytic H2O2 reduction activity, and its number will be directly related to the amount of the introduced Pb2+. Moreover, a DNA nanomotor system is introduced to achieve cyclic detection, and the addition of the fuel DNA strands enables G4 to perform a "complete-dissociation-complete" process for achieving self-cleaning of the electrode interface and the cycle detection of Pb2+. The synergistic effects of Cu-TCPP and G4-hemin DNAzymes, which exhibits efficient and catalytic H2O2 reduction, enhance the performance of the electrochemical sensing system. The linear range of this sensor to Pb2+ is 5 nM-5 μM, and the detection limit is 1.7 nM. Compared with the best system in reported studies, its linear range is five times wider and its detection limit is lower than the previously lowest one. Taking advantage of the Pb2+ stabilized G4, the proposed sensor can selectively detect Pb2+ in the presence of other metal ions. The results presented herein comprise a valuable reference for constructing DNA nanoelectronic devices and establish sensitive and cyclic detection of the target and preparing of self-cleaning electrode interfaces.
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Affiliation(s)
- Junping Ma
- College of Chemistry & Materials Science, Shaanxi Provincial Key Laboratory of Electroanalytical Chemistry, Northwest University, Xi'an, Shaanxi, 710127, China
| | - Wushuang Bai
- College of Food Science and Engineering, Shaanxi Provincial Key Laboratory of Electroanalytical Chemistry, Northwest University, Xi'an, Shaanxi, 710127, China.
| | - Jianbin Zheng
- College of Chemistry & Materials Science, Shaanxi Provincial Key Laboratory of Electroanalytical Chemistry, Northwest University, Xi'an, Shaanxi, 710127, China.
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12
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Bialy RM, Mainguy A, Li Y, Brennan JD. Functional nucleic acid biosensors utilizing rolling circle amplification. Chem Soc Rev 2022; 51:9009-9067. [DOI: 10.1039/d2cs00613h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Functional nucleic acids regulate rolling circle amplification to produce multiple detection outputs suitable for the development of point-of-care diagnostic devices.
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Affiliation(s)
- Roger M. Bialy
- Biointerfaces Institute, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4O3, Canada
| | - Alexa Mainguy
- Biointerfaces Institute, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4O3, Canada
| | - Yingfu Li
- Biointerfaces Institute, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4O3, Canada
- Department of Biochemistry and Biomedical Sciences, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4K1, Canada
| | - John D. Brennan
- Biointerfaces Institute, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4O3, Canada
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13
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A novel miniaturized electroanalytical device integrated with gas extraction for the voltammetric determination of sulfite in beverages. Anal Chim Acta 2021; 1185:339067. [PMID: 34711313 DOI: 10.1016/j.aca.2021.339067] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 08/29/2021] [Accepted: 09/14/2021] [Indexed: 11/20/2022]
Abstract
Voltammetry and amperometry are inexpensive and high-performance analytical techniques. However, their lack of selectivity limits their use in complex matrices such as biological, environmental, and food samples. Therefore, voltammetric and amperometric analyses of these samples usually require time-consuming and laborious sample pretreatments. In this study, we present a simple and cost-effective approach to fabricate a miniaturized electrochemical cell that can be easily coupled to a head space-like gas extraction procedure in such a way the sample pretreatment and voltammetric detection are performed in a single step. As a proof of concept, we have used the proposed system to quantify sulfite in beverage samples after its conversion to SO2(g). Despite the simplicity and low cost of the proposed system, it provided good analytical performance and a limit of detection of 4.0 μmol L-1 was achieved after only 10 min of extraction. The proposed system is quite versatile since it can be applied to quantify any volatile electroactive species. Also, the proposed system provides a unique way to assess real-time extraction curves, which are essential to study and optimize new gas extraction procedures. Therefore, the approach described in this study could contribute to both applied and fundamental Analytical Chemistry.
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14
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Rolling Circle Amplification as an Efficient Analytical Tool for Rapid Detection of Contaminants in Aqueous Environments. BIOSENSORS-BASEL 2021; 11:bios11100352. [PMID: 34677308 PMCID: PMC8533700 DOI: 10.3390/bios11100352] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Revised: 09/16/2021] [Accepted: 09/21/2021] [Indexed: 12/16/2022]
Abstract
Environmental contaminants are a global concern, and an effective strategy for remediation is to develop a rapid, on-site, and affordable monitoring method. However, this remains challenging, especially with regard to the detection of various contaminants in complex water environments. The application of molecular methods has recently attracted increasing attention; for example, rolling circle amplification (RCA) is an isothermal enzymatic process in which a short nucleic acid primer is amplified to form a long single-stranded nucleic acid using a circular template and special nucleic acid polymerases. Furthermore, this approach can be further engineered into a device for point-of-need monitoring of environmental pollutants. In this paper, we describe the fundamental principles of RCA and the advantages and disadvantages of RCA assays. Then, we discuss the recently developed RCA-based tools for environmental analysis to determine various targets, including heavy metals, organic small molecules, nucleic acids, peptides, proteins, and even microorganisms in aqueous environments. Finally, we summarize the challenges and outline strategies for the advancement of this technique for application in contaminant monitoring.
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15
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Abstract
This article provides a comprehensive review of biosensing with DNAzymes, providing an overview of different sensing applications while highlighting major progress and seminal contributions to the field of portable biosensor devices and point-of-care diagnostics. Specifically, the field of functional nucleic acids is introduced, with a specific focus on DNAzymes. The incorporation of DNAzymes into bioassays is then described, followed by a detailed overview of recent advances in the development of in vivo sensing platforms and portable sensors incorporating DNAzymes for molecular recognition. Finally, a critical perspective on the field, and a summary of where DNAzyme-based devices may make the biggest impact are provided.
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Affiliation(s)
- Erin M McConnell
- Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario L8S 4K1, Canada.
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16
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Zhang BY, Shi L, Ma XY, Liu L, Fu Y, Zhang XF. Advances in the Functional Nucleic Acid Biosensors for Detection of Lead Ions. Crit Rev Anal Chem 2021; 53:309-325. [PMID: 34304647 DOI: 10.1080/10408347.2021.1951648] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Lead ions (Pb2+) are destructive to the natural environment and public health, so the efficient detection of Pb2+ is particularly important. Although the instrumental analysis methods have high accuracy, they require high cost and precise operation, which limits their wide application. Therefore, many strategies have been extensively studied for detecting Pb2+ by biosensors. Functional nucleic acids have become an efficient tool in this field. This review focuses on the recent biosensors of detecting Pb2+ based on functional nucleic acids from 2010 to 2020, in which DNAzyme, DNA G-quadruplex and aptamer will be introduced. The biosensors are divided into three categories that colorimetric, fluorometric and electrochemical biosensors according to the different reported signals. The action mechanism and detection effect of each biosensor are explained. Finally, the present situation of nucleic acid biosensor for the detection of Pb2+ is summarized and the future research direction is prospected.
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Affiliation(s)
- Bu-Yue Zhang
- College of Chemical Engineering, North China University of Science and Technology, Tangshan, China
| | - Lei Shi
- College of Chemical Engineering, North China University of Science and Technology, Tangshan, China
| | - Xiao-Ying Ma
- College of Chemical Engineering, North China University of Science and Technology, Tangshan, China
| | - Lu Liu
- College of Chemical Engineering, North China University of Science and Technology, Tangshan, China
| | - Yao Fu
- College of Chemical Engineering, North China University of Science and Technology, Tangshan, China
| | - Xiu-Feng Zhang
- College of Chemical Engineering, North China University of Science and Technology, Tangshan, China
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Ding Q, Li C, Wang H, Xu C, Kuang H. Electrochemical detection of heavy metal ions in water. Chem Commun (Camb) 2021; 57:7215-7231. [PMID: 34223844 DOI: 10.1039/d1cc00983d] [Citation(s) in RCA: 103] [Impact Index Per Article: 34.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Heavy metal ions are one of the main sources of water pollution. Most heavy metal ions are carcinogens that pose a threat to both ecological balance and human health. With the increasing demand for heavy metal detection, electrochemical detection is favorable due to its high sensitivity and efficiency. Here, after discussing the pollution sources and toxicities of Hg(ii), Cd(ii), As(iii), Pb(ii), UO2(ii), Tl(i), Cr(vi), Ag(i), and Cu(ii), we review a variety of recent electrochemical methods for detecting heavy metal ions. Compared with traditional methods, electrochemical methods are portable, fast, and cost-effective, and they can be adapted to various on-site inspection sites. Our review shows that the electrochemical detection of heavy metal ions is a very promising strategy that has attracted widespread attention and can be applied in agriculture, life science, clinical diagnosis, and analysis.
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Affiliation(s)
- Qi Ding
- The Key Laboratory of Food Colloids and Biotechnology, Ministry of Education, School of Chemical and Material Engineering, Jiangnan University, Wuxi 214122, China.
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18
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Chu J, Chen C, Li X, Yu L, Li W, Cheng M, Tang W, Xiong Z. A responsive pure DNA hydrogel for label-free detection of lead ion. Anal Chim Acta 2021; 1157:338400. [PMID: 33832594 DOI: 10.1016/j.aca.2021.338400] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 02/05/2021] [Accepted: 03/08/2021] [Indexed: 11/19/2022]
Abstract
It is of great significance to develop facile and economical strategies for on-site detection and treatment of toxic metal ions. Stimulus-responsive DNA hydrogel materials have been increasingly used for convenient detection of metal ions due to their advantages such as simplicity, portability, and ease of storage. However, these methods still require encapsulation of signal tags by labeling or embedding. In this paper, a one-step preparation of Pb2+-responsive pure DNA hydrogel material was designed to realize a new label-free strategy for Pb2+ biosensing. The Pb2+-dependent DNAzyme strand and substrate strand were introduced to fabricate the DNA hydrogel. The presence of Pb2+ in the sample activates the enzyme strand in the hydrogel skeleton and triggers the cleavage of the substrate, thereby destroy the hydrogel structure. DNA fragments released by the collapsed hydrogel were readily measured as signal output for quantifying Pb2+ concentrations with a minimum detection limit of 7.7 nM. We successfully eliminated the need for embedding or labeling of signal molecules by using the DNA molecules that construct hydrogels as the signal output. And the newly developed method for label-free detection of Pb2+ based on pure DNA hydrogel is simple, easy readout, and cost-effective. By adjusting the DNAzyme and substrate sequences, label-free analysis of other metal ions can also be achieved. We expect that our strategy can be applied to the field detection of toxic metal ions.
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Affiliation(s)
- Jian Chu
- Institute of Materials, China Academy of Engineering Physics, Mianyang, 621907, China
| | - Chun Chen
- Institute of Materials, China Academy of Engineering Physics, Mianyang, 621907, China
| | - Xijian Li
- Institute of Materials, China Academy of Engineering Physics, Mianyang, 621907, China
| | - Libing Yu
- Institute of Materials, China Academy of Engineering Physics, Mianyang, 621907, China
| | - Wenjing Li
- Institute of Materials, China Academy of Engineering Physics, Mianyang, 621907, China
| | - Mengxi Cheng
- Institute of Materials, China Academy of Engineering Physics, Mianyang, 621907, China
| | - Wei Tang
- Institute of Materials, China Academy of Engineering Physics, Mianyang, 621907, China.
| | - Zhonghua Xiong
- Institute of Materials, China Academy of Engineering Physics, Mianyang, 621907, China
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Xu L, Duan J, Chen J, Ding S, Cheng W. Recent advances in rolling circle amplification-based biosensing strategies-A review. Anal Chim Acta 2020; 1148:238187. [PMID: 33516384 DOI: 10.1016/j.aca.2020.12.062] [Citation(s) in RCA: 85] [Impact Index Per Article: 21.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Revised: 12/09/2020] [Accepted: 12/28/2020] [Indexed: 01/12/2023]
Abstract
Rolling circle amplification (RCA) is an efficient enzymatic isothermal reaction that using circular probe as a template to generate long tandem single-stranded DNA or RNA products under the initiation of short DNA or RNA primers. As a simplified derivative of natural rolling circle replication which synthesizes copies of circular nucleic acids molecules such as plasmids, RCA amplifies the circular template rapidly without thermal cycling and finds various applications in molecular biology. Compared with other amplification strategies, RCA has many obvious advantages. Firstly, because of the strict complementarity required in ligation of a padlock probe, it endows the RCA reaction with high specificity and can even be utilized to distinguish single base mismatches. Secondly, through the introduction of multiple primers, exponential amplification can be achieved easily and leads to a good sensitivity. Thirdly, RCA products can be customized by manipulating circular templates to generate functional nucleic acids such as aptamer, DNAzymes and restriction enzyme sites. Moreover, the RCA has good biocompatibility and is especially suitable for in situ detection. Therefore, RCA has attracted considerable attention as an efficient and potential tool for highly sensitive detection of biomarkers. Herein, we comprehensively introduce the fundamental principles of RCA technology, summarize it from three aspects including initiation mode, amplification mode and signal output mode, and discuss the recent application of RCA-based biosensor in this review.
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Affiliation(s)
- Lulu Xu
- The Center for Clinical Molecular Medical Detection, The First Affiliated Hospital of Chongqing Medical University, Chongqing, 400016, PR China
| | - Jiaxin Duan
- The Center for Clinical Molecular Medical Detection, The First Affiliated Hospital of Chongqing Medical University, Chongqing, 400016, PR China
| | - Junman Chen
- Key Laboratory of Clinical Laboratory Diagnostics (Ministry of Education), College of Laboratory Medicine, Chongqing Medical University, Chongqing, 400016, PR China
| | - Shijia Ding
- Key Laboratory of Clinical Laboratory Diagnostics (Ministry of Education), College of Laboratory Medicine, Chongqing Medical University, Chongqing, 400016, PR China.
| | - Wei Cheng
- The Center for Clinical Molecular Medical Detection, The First Affiliated Hospital of Chongqing Medical University, Chongqing, 400016, PR China.
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Yang Y, Li W, Liu J. Review of recent progress on DNA-based biosensors for Pb 2+ detection. Anal Chim Acta 2020; 1147:124-143. [PMID: 33485571 DOI: 10.1016/j.aca.2020.12.056] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2020] [Revised: 12/12/2020] [Accepted: 12/25/2020] [Indexed: 02/08/2023]
Abstract
Lead (Pb) is a highly toxic heavy metal of great environmental and health concerns, and interestingly Pb2+ has played important roles in nucleic acids chemistry. Since 2000, using DNA for selective detection of Pb2+ has become a rapidly growing topic in the analytical community. Pb2+ can serve as the most active cofactor for RNA-cleaving DNAzymes including the GR5, 17E and 8-17 DNAzymes. Recently, Pb2+ was found to promote a porphyrin metalation DNAzyme named T30695. In addition, Pb2+ can tightly bind to various G-quadruplex sequences inducing their unique folding and binding to other molecules such as dyes and hemin. The peroxidase-like activity of G-quadruplex/hemin complexes was also used for Pb2+ sensing. In this article, these Pb2+ recognition mechanisms are reviewed from fundamental chemistry to the design of fluorescent, colorimetric, and electrochemical biosensors. In addition, various signal amplification mechanisms such as rolling circle amplification, hairpin hybridization chain reaction and nuclease-assisted methods are coupled to these sensing methods to drive up sensitivity. We mainly cover recent examples published since 2015. In the end, some practical aspects of these sensors and future research opportunities are discussed.
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Affiliation(s)
- Yongjie Yang
- Department of Food and Biological Sciences, College of Agriculture, Yanbian University, Yanji, 133002, China; Department of Chemistry, Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada
| | - Weixuan Li
- Department of Chemistry, Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada
| | - Juewen Liu
- Department of Chemistry, Waterloo Institute for Nanotechnology, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada; Water Institute, University of Waterloo, Waterloo, Ontario, N2L 3G1, Canada.
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21
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Zhang X, Huang X, Xu Y, Wang X, Guo Z, Huang X, Li Z, Shi J, Zou X. Single-step electrochemical sensing of ppt-level lead in leaf vegetables based on peroxidase-mimicking metal-organic framework. Biosens Bioelectron 2020; 168:112544. [DOI: 10.1016/j.bios.2020.112544] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2020] [Revised: 08/17/2020] [Accepted: 08/22/2020] [Indexed: 12/19/2022]
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22
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Li J, Mohammed-Elsabagh M, Paczkowski F, Li Y. Circular Nucleic Acids: Discovery, Functions and Applications. Chembiochem 2020; 21:1547-1566. [PMID: 32176816 DOI: 10.1002/cbic.202000003] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Revised: 02/13/2020] [Indexed: 12/14/2022]
Abstract
Circular nucleic acids (CNAs) are nucleic acid molecules with a closed-loop structure. This feature comes with a number of advantages including complete resistance to exonuclease degradation, much better thermodynamic stability, and the capability of being replicated by a DNA polymerase in a rolling circle manner. Circular functional nucleic acids, CNAs containing at least a ribozyme/DNAzyme or a DNA/RNA aptamer, not only inherit the advantages of CNAs but also offer some unique application opportunities, such as the design of topology-controlled or enabled molecular devices. This article will begin by summarizing the discovery, biogenesis, and applications of naturally occurring CNAs, followed by discussing the methods for constructing artificial CNAs. The exploitation of circular functional nucleic acids for applications in nanodevice engineering, biosensing, and drug delivery will be reviewed next. Finally, the efforts to couple functional nucleic acids with rolling circle amplification for ultra-sensitive biosensing and for synthesizing multivalent molecular scaffolds for unique applications in biosensing and drug delivery will be recapitulated.
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Affiliation(s)
- Jiuxing Li
- M.G. DeGroote Institute for Infectious Disease Research Department of Biochemistry and Biomedical Sciences, McMaster University, 1280 Main Street West, Hamilton, L8S 4K1, Canada
| | - Mostafa Mohammed-Elsabagh
- M.G. DeGroote Institute for Infectious Disease Research Department of Biochemistry and Biomedical Sciences, McMaster University, 1280 Main Street West, Hamilton, L8S 4K1, Canada
| | - Freeman Paczkowski
- M.G. DeGroote Institute for Infectious Disease Research Department of Biochemistry and Biomedical Sciences, McMaster University, 1280 Main Street West, Hamilton, L8S 4K1, Canada
| | - Yingfu Li
- M.G. DeGroote Institute for Infectious Disease Research Department of Biochemistry and Biomedical Sciences, McMaster University, 1280 Main Street West, Hamilton, L8S 4K1, Canada
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23
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Xu L, Suo XY, Zhang Q, Li XP, Chen C, Zhang XY. ELISA and Chemiluminescent Enzyme Immunoassay for Sensitive and Specific Determination of Lead (II) in Water, Food and Feed Samples. Foods 2020; 9:foods9030305. [PMID: 32182696 PMCID: PMC7143091 DOI: 10.3390/foods9030305] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2020] [Revised: 03/05/2020] [Accepted: 03/05/2020] [Indexed: 11/21/2022] Open
Abstract
Lead is a heavy metal with increasing public health concerns on its accumulation in the food chain and environment. Immunoassays for the quantitative measurement of environmental heavy metals offer numerous advantages over other traditional methods. ELISA and chemiluminescent enzyme immunoassay (CLEIA), based on the mAb we generated, were developed for the detection of lead (II). In total, 50% inhibitory concentrations (IC50) of lead (II) were 9.4 ng/mL (ELISA) and 1.4 ng/mL (CLEIA); the limits of detection (LOD) were 0.7 ng/mL (ic-ELISA) and 0.1 ng/mL (ic-CLEIA), respectively. Cross-reactivities of the mAb toward other metal ions were less than 0.943%, indicating that the obtained mAb has high sensitivity and specificity. The recovery rates were 82.1%–108.3% (ic-ELISA) and 80.1%–98.8% (ic-CLEIA), respectively. The developed methods are feasible for the determination of trace lead (II) in various samples with high sensitivity, specificity, fastness, simplicity and accuracy.
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Affiliation(s)
- Long Xu
- College of Biological Science and Engineering, Shaanxi University of Technology, Hanzhong 723000, China; (L.X.); (Q.Z.); (C.C.)
- Centre of Molecular and Environmental Biology, University of Minho, Department of Biology, Campus de Gualtar, 4710-057 Braga, Portugal
| | - Xiao-yi Suo
- College of Veterinary Medicine, Northwest A&F University, Yangling 712100, China; (X.-y.S.); (X.-p.L.)
| | - Qi Zhang
- College of Biological Science and Engineering, Shaanxi University of Technology, Hanzhong 723000, China; (L.X.); (Q.Z.); (C.C.)
- College of Veterinary Medicine, Northwest A&F University, Yangling 712100, China; (X.-y.S.); (X.-p.L.)
| | - Xin-ping Li
- College of Veterinary Medicine, Northwest A&F University, Yangling 712100, China; (X.-y.S.); (X.-p.L.)
| | - Chen Chen
- College of Biological Science and Engineering, Shaanxi University of Technology, Hanzhong 723000, China; (L.X.); (Q.Z.); (C.C.)
| | - Xiao-ying Zhang
- College of Biological Science and Engineering, Shaanxi University of Technology, Hanzhong 723000, China; (L.X.); (Q.Z.); (C.C.)
- Centre of Molecular and Environmental Biology, University of Minho, Department of Biology, Campus de Gualtar, 4710-057 Braga, Portugal
- College of Veterinary Medicine, Northwest A&F University, Yangling 712100, China; (X.-y.S.); (X.-p.L.)
- Correspondence:
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24
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Khattab TA, Fouda MM, Rehan M, Okla MK, Alamri SA, Alaraidh IA, AL-ghamdi AA, Soufan WH, Abdelsalam EM, Allam AA. Novel halochromic cellulose nanowhiskers from rice straw: Visual detection of urea. Carbohydr Polym 2020; 231:115740. [DOI: 10.1016/j.carbpol.2019.115740] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Revised: 12/11/2019] [Accepted: 12/12/2019] [Indexed: 12/26/2022]
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25
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Xiang H, Cai Q, Li Y, Zhang Z, Cao L, Li K, Yang H. Sensors Applied for the Detection of Pesticides and Heavy Metals in Freshwaters. JOURNAL OF SENSORS 2020; 2020:1-22. [DOI: 10.1155/2020/8503491] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Water is essential for every life living on the planet. However, we are facing a more serious situation such as water pollution since the industrial revolution. Fortunately, many efforts have been done to alleviate/restore water quality in freshwaters. Numerous sensors have been developed to monitor the dynamic change of water quality for ecological, early warning, and protection reasons. In the present review, we briefly introduced the pollution status of two major pollutants, i.e., pesticides and heavy metals, in freshwaters worldwide. Then, we collected data on the sensors applied to detect the two categories of pollutants in freshwaters. Special focuses were given on the sensitivity of sensors indicated by the limit of detection (LOD), sensor types, and applied waterbodies. Our results showed that most of the sensors can be applied for stream and river water. The average LOD was72.53±12.69 ng/ml (n=180) for all pesticides, which is significantly higher than that for heavy metals (65.36±47.51 ng/ml,n=117). However, the LODs of a considerable part of pesticides and heavy metal sensors were higher than the criterion maximum concentration for aquatic life or the maximum contaminant limit concentration for drinking water. For pesticide sensors, the average LODs did not differ among insecticides (63.83±17.42 ng/ml,n=87), herbicides (98.06±23.39 ng/ml,n=71), and fungicides (24.60±14.41 ng/ml,n=22). The LODs that differed among sensor types with biosensors had the highest sensitivity, while electrochemical optical and biooptical sensors showed the lowest sensitivity. The sensitivity of heavy metal sensors varied among heavy metals and sensor types. Most of the sensors were targeted on lead, cadmium, mercury, and copper using electrochemical methods. These results imply that future development of pesticides and heavy metal sensors should (1) enhance the sensitivity to meet the requirements for the protection of aquatic ecosystems and human health and (2) cover more diverse pesticides and heavy metals especially those toxic pollutants that are widely used and frequently been detected in freshwaters (e.g., glyphosate, fungicides, zinc, chromium, and arsenic).
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Affiliation(s)
- Hongyong Xiang
- Key Laboratory of Vegetation Ecology, Ministry of Education, Institute of Grassland Science, Northeast Normal University, Changchun, Jilin 130024, China
- Institute for Ecological Research and Pollution Control of Plateau Lakes, School of Ecology and Environmental Science, Yunnan University, Kunming, Yunnan 650500, China
| | - Qinghua Cai
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Yuan Li
- Northwest Land and Resources Research Center, Shaanxi Normal Northwest University, China
| | - Zhenxing Zhang
- Key Laboratory of Vegetation Ecology, Ministry of Education, Institute of Grassland Science, Northeast Normal University, Changchun, Jilin 130024, China
- State Environmental Protection Key Laboratory of Wetland Ecology and Vegetation Restoration, Northeast Normal University, Changchun, Jilin 130024, China
| | - Lina Cao
- Ecology and Environment Department of Jilin Province, Changchun, Jilin 130024, China
| | - Kun Li
- Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region, Heilongjiang University, Harbin 150080, China
| | - Haijun Yang
- Key Laboratory of Vegetation Ecology, Ministry of Education, Institute of Grassland Science, Northeast Normal University, Changchun, Jilin 130024, China
- Institute for Ecological Research and Pollution Control of Plateau Lakes, School of Ecology and Environmental Science, Yunnan University, Kunming, Yunnan 650500, China
- School of Life Science and Geology, Yili Normal University, Yili, Xinjiang 835000, China
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Yan Y, Ma C, Tang Z, Chen M, Zhao H. A novel fluorescent assay based on DNAzyme-assisted detection of prostate specific antigen for signal amplification. Anal Chim Acta 2020; 1104:172-179. [PMID: 32106949 DOI: 10.1016/j.aca.2020.01.014] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2019] [Revised: 11/23/2019] [Accepted: 01/07/2020] [Indexed: 12/13/2022]
Abstract
Prostate specific antigen (PSA) is one of the most common biomarkers for the management of prostate cancer. However, it still remains urgent to develop highly sensitive, cost-effective and selective strategies for PSA assay. In this paper, we developed a low-cost, highly sensitive and specific analytical strategy for the detection of PSA by using a fluorescence sensor based on Pb2+-dependent DNAzyme. We designed a DNA sequence called cmMB with a hairpin structure, containing PSA-specific aptamers and Pb2+-dependent DNAzyme chains. Also, a fluorophore-labelled DNA sequence called Sub-FAM, which contains a cleavage site of Pb2+-dependent DNAzyme and serves as substrate, is also designed for the signal generation. In the presence of PSA, interaction between aptamer and PSA blocks the hairpin structure of cmMB, resulting in the formation of Pb2+-dependent DNAzyme with Pb2+. Then, Pb2+-dependent DNAzyme can cleavage Sub-FAM and produce a high fluorescence. In the absence of PSA, since Sub-FAM remains to be ssDNA and can be absorbed by GO, only low fluorescence can be detected. Under optimal experimental conditions, a good linear relationship in the range of 1-100 pg mL-1 was exhibited, with a limit of detection (LOD) of 0.76 pg mL-1. In addition, the proposed method has potential value in the diagnosis and monitoring of prostate cancer because of its good selectivity and practical application in biological samples.
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Affiliation(s)
- Ying Yan
- School of Life Sciences, Central South University, Changsha, 410013, China
| | - Changbei Ma
- School of Life Sciences, Central South University, Changsha, 410013, China.
| | - Zhenwei Tang
- School of Life Sciences, Central South University, Changsha, 410013, China
| | - Mingjian Chen
- School of Life Sciences, Central South University, Changsha, 410013, China
| | - Han Zhao
- School of Life Sciences, Central South University, Changsha, 410013, China
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27
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Electrochemical biosensor for amplified detection of Pb2+ based on perfect match of reduced graphene oxide–gold nanoparticles and single-stranded DNAzyme. Anal Bioanal Chem 2019; 411:7499-7509. [DOI: 10.1007/s00216-019-02146-w] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Revised: 08/08/2019] [Accepted: 09/09/2019] [Indexed: 12/21/2022]
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28
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Zheng J, Peng X, Wang Y, Bao T, Wen W, Zhang X, Wang S. An exonuclease-assisted triple-amplified electrochemical aptasensor for mucin 1 detection based on strand displacement reaction and enzyme catalytic strategy. Anal Chim Acta 2019; 1086:75-81. [PMID: 31561796 DOI: 10.1016/j.aca.2019.08.019] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2019] [Revised: 08/07/2019] [Accepted: 08/12/2019] [Indexed: 12/12/2022]
Abstract
The development of some sensitive methods for MUC1 is critical for preclinical diagnosis of tumors. In this experiment, we built a triple-amplified electrochemical aptasensor to achieve sensitive detection of MUC1, which was based on exonuclease III (Exo III)-assisted with strand displacement reaction and enzyme catalytic strategy. Firstly, with the help of Exo III, MUC1 and aptamer could be recycled during the cycle I, the single stranded DNA-1 (S-1) was produced during the process and was introduced to the hybride reaction on the electrode. Secondly, during the cycle II, strand displacement reaction was triggered on the electrode with the adding of hairpin DNA-2 (H-2). Thirdly, after the gold nanoparticles (AuNPs)-DNA-enzyme conjugates hybrided with the H-2 on the electrode, the AuNPs-DNA-enzyme conjugates could act as signal probe to produce electrochemical catalytic signal. We used the fabricated triple-amplified electrochemical aptasensor that could detect MUC1 from 0.1 pg mL-1 to 10 ng mL-1 with the detection limit of 0.04 pg mL-1 under the optimized experimental conditions. The constructed triple-amplified electrochemical aptasensor could be applied in real samples determination. Besides, the strategy can be applied to detect other proteins for health monitoring.
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Affiliation(s)
- Jiaxin Zheng
- Hubei Collaborative Innovation Center for Advanced Organic Chemical Materials, Ministry of Education Key Laboratory for the Synthesis and Application of Organic Functional Molecules & College of Chemistry and Chemical Engineering, Hubei University, Wuhan, 430062, PR China
| | - Xiaolun Peng
- Hubei Collaborative Innovation Center for Advanced Organic Chemical Materials, Ministry of Education Key Laboratory for the Synthesis and Application of Organic Functional Molecules & College of Chemistry and Chemical Engineering, Hubei University, Wuhan, 430062, PR China
| | - Yijia Wang
- Hubei Collaborative Innovation Center for Advanced Organic Chemical Materials, Ministry of Education Key Laboratory for the Synthesis and Application of Organic Functional Molecules & College of Chemistry and Chemical Engineering, Hubei University, Wuhan, 430062, PR China
| | - Ting Bao
- Hubei Collaborative Innovation Center for Advanced Organic Chemical Materials, Ministry of Education Key Laboratory for the Synthesis and Application of Organic Functional Molecules & College of Chemistry and Chemical Engineering, Hubei University, Wuhan, 430062, PR China
| | - Wei Wen
- Hubei Collaborative Innovation Center for Advanced Organic Chemical Materials, Ministry of Education Key Laboratory for the Synthesis and Application of Organic Functional Molecules & College of Chemistry and Chemical Engineering, Hubei University, Wuhan, 430062, PR China
| | - Xiuhua Zhang
- Hubei Collaborative Innovation Center for Advanced Organic Chemical Materials, Ministry of Education Key Laboratory for the Synthesis and Application of Organic Functional Molecules & College of Chemistry and Chemical Engineering, Hubei University, Wuhan, 430062, PR China
| | - Shengfu Wang
- Hubei Collaborative Innovation Center for Advanced Organic Chemical Materials, Ministry of Education Key Laboratory for the Synthesis and Application of Organic Functional Molecules & College of Chemistry and Chemical Engineering, Hubei University, Wuhan, 430062, PR China.
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A fluorometric lead(II) assay by using a DNA dendrimer as a carrier for the immobilization of the signal probe. Mikrochim Acta 2019; 186:582. [DOI: 10.1007/s00604-019-3666-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2019] [Accepted: 07/06/2019] [Indexed: 10/26/2022]
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30
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A triply amplified electrochemical lead(II) sensor by using a DNAzyme and via formation of a DNA-gold nanoparticle network induced by a catalytic hairpin assembly. Mikrochim Acta 2019; 186:559. [DOI: 10.1007/s00604-019-3612-5] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Accepted: 06/14/2019] [Indexed: 10/26/2022]
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31
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Xu W, Zhao A, Zuo F, Jafar Hussain HM, Khan R. A "turn-off" SERS aptasensor based DNAzyme-gold nanorod for ultrasensitive lead ion detection. Anal Chim Acta X 2019; 2:100020. [PMID: 33117981 PMCID: PMC7587025 DOI: 10.1016/j.acax.2019.100020] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2019] [Revised: 06/06/2019] [Accepted: 06/07/2019] [Indexed: 02/06/2023] Open
Abstract
It is great significance to precisely monitor lead (II) ions (Pb2+) for environment protection and human health monitoring. We designed a sensitive detection strategy for sensitive and selective determination of Pb2+, based on a Pb2+-specific DNAzyme as the catalytic unit, Cy3-labeled DNA modified gold nanorods (AuNRs) as SERS reporter. Firstly, AuNRs surface were employed as a platform for the immobilization of thiolated probe DNA, and then hybridized with DNAzyme catalytic beacons. By taking advantage of DNAzyme digest, a molecular beacon, causes a "turn-off" SERS signal by disrupting the labeled probes. Under the optical conditions, the DNAzyme-AuNRs sensor system exhibited high sensitivity, acceptable stability and reproducibility with a wide linear range from 0.5 to 100 nM (R2 = 0.9973), and an ultra-low detection limit of 0.01 nM. The proposed strategy has additional advantages of being less time-consuming, low-cost and remote query, and avoids the interference of some metals such as Fe3+, Cd2+, Ba2+, Cu2+, Zn2+. The SERS biosensor system has been successfully applied for detecting Pb2+ in real samples with a satisfactory result. The result indicated that the proposed sensing strategy not only enriches SERS platform of monitoring Pb2+ but also exhibits potential for the point-of-care diagnostic application of the clinical screening in complicated biological samples.
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Affiliation(s)
- Wei Xu
- Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, 230031, People's Republic of China.,Department of Chemistry, University of Science and Technology of China, Hefei, Anhui, 230026, People's Republic of China.,State Key Laboratory of Transducer Technology, Chinese Academy of Sciences, Hefei, 230031, People's Republic of China
| | - Aiwu Zhao
- Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, 230031, People's Republic of China.,Department of Chemistry, University of Science and Technology of China, Hefei, Anhui, 230026, People's Republic of China.,State Key Laboratory of Transducer Technology, Chinese Academy of Sciences, Hefei, 230031, People's Republic of China
| | - Fangtao Zuo
- Institute of Intelligent Machines, Chinese Academy of Sciences, Hefei, 230031, People's Republic of China.,Department of Chemistry, University of Science and Technology of China, Hefei, Anhui, 230026, People's Republic of China.,State Key Laboratory of Transducer Technology, Chinese Academy of Sciences, Hefei, 230031, People's Republic of China
| | - Hafiz Muhammad Jafar Hussain
- School of Life Sciences, University of Science and Technology of China, Hefei, 230027, People's Republic of China
| | - Ranjha Khan
- School of Life Sciences, University of Science and Technology of China, Hefei, 230027, People's Republic of China
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Lu W, Lin C, Yang J, Wang X, Yao B, Wang M. A DNAzyme assay coupled with effective magnetic separation and rolling circle amplification for detection of lead cations with a smartphone camera. Anal Bioanal Chem 2019; 411:5383-5391. [DOI: 10.1007/s00216-019-01879-y] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2019] [Revised: 04/21/2019] [Accepted: 04/26/2019] [Indexed: 12/18/2022]
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Pang LY, Wang P, Gao JJ, Wen Y, Liu H. An active metal-organic anion framework with highly exposed SO42− on {001} facets for the enhanced electrochemical detection of trace Fe3+. J Electroanal Chem (Lausanne) 2019. [DOI: 10.1016/j.jelechem.2019.01.067] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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