1
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Fatima N, Saeed A, Ullah S, Halim SA, Khan A, Yaseen M, Mumtaz A, Hashmi MZ, El-Seedi HR, Uddin J, Al-Harrasi A. Synthesis of novel 1,2,3-triazole-tethered N-acyl hydrazones as a new class of carbonic anhydrase II inhibitors: In vitro and in silico potentials. Bioorg Chem 2024; 153:107822. [PMID: 39305609 DOI: 10.1016/j.bioorg.2024.107822] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2024] [Revised: 08/26/2024] [Accepted: 09/11/2024] [Indexed: 12/14/2024]
Abstract
Carbonic anhydrase II (CA II) is crucial for maintaining homeostasis in several processes, including respiration, lipogenesis, gluconeogenesis, calcification, bone resorption, and electrolyte balance. It is a pivotal druggable target which is implicated in glaucoma, renal, gastric, and pancreatic carcinomas, as well as in malignant brain tumours. Therefore, to identify new CA II (bovine) inhibitors, the current study was designed to synthesize a library of 20 new triazole-linked hydrazones (6a-t). All compounds were characterized by using spectroscopic techniques such as NMR and mass spectrometry. The in-vitro evaluation resulted in impressive inhibitory capability against CA II with IC50 values ranging from 9.10 ± 0.26-48.26 ± 1.30 µM. Among all derivatives, compounds 6a, 6b, 6d, 6k-6m, 6q, 6s and 6t exhibited potent inhibitory potential with 6t deemed as the most active inhibitor. Additionally, kinetic study of the hybrid 6t revealed concentration dependent type of inhibition with Ki value 7.24 ± 0.0086 µM. Furthermore, molecular docking of 6t correlates well with the kinetic analysis. The in-silico ADMET indicated that most of the synthesized compounds have properties conducive to drug development.
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Affiliation(s)
- Noor Fatima
- Department of Chemistry, Quaid-i-Azam University, Islamabad 45320, Pakistan
| | - Aamer Saeed
- Department of Chemistry, Quaid-i-Azam University, Islamabad 45320, Pakistan.
| | - Saeed Ullah
- Natural and Medical Sciences Research Centre, University of Nizwa, P.O. Box 33, PC 616, Birkat Al Mauz, Nizwa, Sultanate of Oman
| | - Sobia Ahsan Halim
- Natural and Medical Sciences Research Centre, University of Nizwa, P.O. Box 33, PC 616, Birkat Al Mauz, Nizwa, Sultanate of Oman
| | - Ajmal Khan
- Natural and Medical Sciences Research Centre, University of Nizwa, P.O. Box 33, PC 616, Birkat Al Mauz, Nizwa, Sultanate of Oman; Department of Chemical and Biological Engineering, College of Engineering, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, Republic of Korea
| | - Muhammad Yaseen
- Institute of Chemical Sciences, University of Swat, Charbagh, Swat 19130, Pakistan
| | - Amara Mumtaz
- Department of Chemistry, COMSATS Institute of Information Technology, Abbottabad 22060, Pakistan
| | - Muhammad Zaffar Hashmi
- Department of Environmental Health and Management, Health Services Academy Islamabad, Pakistan
| | - Hesham R El-Seedi
- Department of Chemistry, Faculty of Science, Islamic University of Madinah, Madinah 42351, Saudi Arabia
| | - Jalal Uddin
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Khalid University, Abha 62529, Saudi Arabia
| | - Ahmed Al-Harrasi
- Natural and Medical Sciences Research Centre, University of Nizwa, P.O. Box 33, PC 616, Birkat Al Mauz, Nizwa, Sultanate of Oman.
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2
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Özil M, Balaydın HT, Dogan B, Şentürk M, Durdagi S. Efficient, rapid, and high-yield synthesis of aryl Schiff base derivatives and their in vitro and in silico inhibition studies of hCA I, hCA II, AChE, and BuChE. Arch Pharm (Weinheim) 2024; 357:e2300266. [PMID: 38593306 DOI: 10.1002/ardp.202300266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2023] [Revised: 03/12/2024] [Accepted: 03/13/2024] [Indexed: 04/11/2024]
Abstract
This study reports a rapid and efficient synthesis of four novel aryl Schiff base derivatives. Biological activity and molecular modeling studies were conducted to evaluate the inhibitory effects of these compounds on human carbonic anhydrases (hCA) and cholinesterases. The results indicate that the triazole-ring-containing compounds have strong inhibitory effects on hCA I, hCA II, acetylcholinesterase (AChE), and butyrylcholinesterase (BuChE) targets. Besides comparing the Schiff bases synthesized in our study to reference molecules, we conducted in silico investigations to examine how these compounds interact with their targets. Our studies revealed that these compounds can occupy binding sites and establish interactions with crucial residues, thus inhibiting the functions of the targets. These findings have significant implications as they can be utilized to develop more potent compounds for treating the diseases that these target proteins play crucial roles in or to obtain drug precursors with enhanced efficacy.
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Affiliation(s)
- Musa Özil
- Department of Chemistry, The Faculty of Arts and Sciences, Recep Tayyip Erdogan University, Rize, Türkiye
| | - Halis T Balaydın
- Education Faculty, Recep Tayyip Erdogan University, Rize, Türkiye
| | - Berna Dogan
- Department of Chemistry, Istanbul Technical University, Istanbul, Türkiye
- Department of Biochemistry, School of Medicine, Bahçeşehir University, Istanbul, Türkiye
| | - Murat Şentürk
- Pharmacy Faculty, Agri Ibrahim Cecen University, Agri, Türkiye
| | - Serdar Durdagi
- Computational Biology and Molecular Simulations Laboratory, Department of Biophysics, School of Medicine, Bahçeşehir University, Istanbul, Türkiye
- Molecular Therapy Lab, Department of Pharmaceutical Chemistry, School of Pharmacy, Bahçeşehir University, Istanbul, Türkiye
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3
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El Ati R, Öztaşkın N, Çağan A, Akıncıoğlu A, Demir Y, Göksu S, Touzani R, Gülçin İ. Novel benzene sulfonamides with acetylcholinesterase and carbonic anhydrase inhibitory actions. Arch Pharm (Weinheim) 2024; 357:e2300545. [PMID: 38423951 DOI: 10.1002/ardp.202300545] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 02/12/2024] [Accepted: 02/13/2024] [Indexed: 03/02/2024]
Abstract
A series of benzene sulfonamides 15-26 were synthesized and determined for their in vitro and in silico inhibitory profiles toward acetylcholinesterase (AChE) and carbonic anhydrases (CAs). Commercially available 3,4-dimethoxytoluene was reacted with chlorosulfonic acid to furnish benzene sulfonyl chloride derivatives. The reaction of substituted benzene sulfonyl chloride with some amines also including (±)-α-amino acid methyl esters afforded a series of novel benzene sulfonamides. In this study, the enzyme inhibition abilities of these compounds were evaluated against AChE and CAs. They exhibited a highly potent inhibition ability on AChE and -CAs (Ki values are in the range of 28.11 ± 4.55 nM and 145.52 ± 28.68 nM for AChE, 39.20 ± 2.10 nM to 131.54 ± 12.82 nM for CA I, and 50.96 ± 9.83 nM and 147.94 ± 18.75 nM for CA II). The present newly synthesized novel benzene sulfonamides displayed efficient inhibitory profiles against AChE and CAs, and it is anticipated that they may emerge as lead molecules for some diseases including glaucoma, epilepsy, and Alzheimer's disease.
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Affiliation(s)
- Rafika El Ati
- Laboratory of Applied Chemistry and Environment (LCAE), Faculty of Sciences, University Mohammed the first, Oujda, Morocco
- Department of Chemistry, Faculty of Science, Atatürk University, Erzurum, Turkiye
| | - Necla Öztaşkın
- Department of Chemistry, Faculty of Science, Atatürk University, Erzurum, Turkiye
| | - Ahmet Çağan
- Central Researching Laboratory, Agri Ibrahim Cecen University, Agri, Turkiye
| | - Akın Akıncıoğlu
- Central Researching Laboratory, Agri Ibrahim Cecen University, Agri, Turkiye
- Vocational School, Ağrı İbrahim Çeçen University, Agri, Turkiye
| | - Yeliz Demir
- Department of Pharmacy Services, Ardahan University, Ardahan, Turkiye
| | - Süleyman Göksu
- Department of Chemistry, Faculty of Science, Atatürk University, Erzurum, Turkiye
| | - Rachid Touzani
- Laboratory of Applied Chemistry and Environment (LCAE), Faculty of Sciences, University Mohammed the first, Oujda, Morocco
| | - İlhami Gülçin
- Department of Chemistry, Faculty of Science, Atatürk University, Erzurum, Turkiye
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4
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Çakmak R, Başaran E, Sahin K, Şentürk M, Durdağı S. Synthesis of Novel Hydrazide-Hydrazone Compounds and In Vitro and In Silico Investigation of Their Biological Activities against AChE, BChE, and hCA I and II. ACS OMEGA 2024; 9:20030-20041. [PMID: 38737075 PMCID: PMC11079868 DOI: 10.1021/acsomega.3c10182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2023] [Revised: 03/31/2024] [Accepted: 04/09/2024] [Indexed: 05/14/2024]
Abstract
The abnormal levels of the human carbonic anhydrase isoenzymes I and II (hCA I and II) and cholinesterase enzymes, namely, acetylcholinesterase (AChE) and butyrylcholinesterase (BChE), are linked with various disorders including Alzheimer's disease. In this study, six new nicotinic hydrazide derivatives (7-12) were designed and synthesized for the first time, and their inhibitory profiles against hCA I, hCA II, AChE, and BChE were investigated by in vitro assays and in silico studies. The structures of novel molecules were elucidated by using spectroscopic techniques and elemental analysis. These molecules showed inhibitory activities against hCA I and II with IC50 values ranging from 7.12 to 45.12 nM. Compared to reference drug acetazolamide (AZA), compound 8 was the most active inhibitor against hCA I and II. On the other hand, it was determined that IC50 values of the tested molecules ranged between 21.45 and 61.37 nM for AChE and between 18.42 and 54.74 nM for BChE. Among them, compound 12 was the most potent inhibitor of AChE and BChE, with IC50 values of 21.45 and 18.42 nM, respectively. In order to better understand the mode of action of these new compounds, state-of-the-art molecular modeling techniques were also conducted.
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Affiliation(s)
- Reşit Çakmak
- Medical
Laboratory Techniques Program, Vocational School of Health Services, Batman University, 72000 Batman, Türkiye
| | - Eyüp Başaran
- Department
of Chemistry and Chemical Processing Technologies, Vocational School
of Technical Sciences, Batman University, 72000 Batman, Türkiye
| | - Kader Sahin
- Department
of Analytical Chemistry, School of Pharmacy, Bahcesehir University, 34353 Istanbul, Türkiye
| | - Murat Şentürk
- Department
of Biochemistry, Pharmacy Faculty, Ağrı
Ibrahim Çecen University, 04100 Ağrı, Türkiye
| | - Serdar Durdağı
- Computational
Biology and Molecular Simulations Laboratory, Department of Biophysics,
School of Medicine, Bahçeşehir
University, 34353 İstanbul, Türkiye
- Lab
for Innovative
Drugs (Lab4IND), Computational Drug Design Center (HITMER), Bahçeşehir University, 34353 İstanbul, Türkiye
- Molecular
Therapy Lab, Department of Pharmaceutical Chemistry, School of Pharmacy, Bahçeşehir University, 34353 Istanbul, Türkiye
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5
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Yakan H, Bilir G, Çakmak Ş, Taş Ö, Türköz Karakullukçu N, Soydan E, Kütük H, Güçlü C, Şentürk M, Arslan T, Öztürk S, Aksakal E, Ekinci D. Inhibitory effects of sulfenimides on human and bovine carbonic anhydrase enzymes. J Enzyme Inhib Med Chem 2023; 38:2194573. [PMID: 36971264 PMCID: PMC10044159 DOI: 10.1080/14756366.2023.2194573] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023] Open
Abstract
A series of sulfenimide derivatives (1a-i) were investigated as inhibitors of human (hCA-I, hCA-II) and bovine (bCA) carbonic anhydrase enzymes. The compounds were synthesised by the reaction of substituted thiophenols with phthalimide by means of an effective, simple and eco-friendly method and the structures were confirmed by IR, 1H NMR, 13C NMR, MS and elemental analysis. All derivatives except for the methyl derivative (1b) exhibited effective inhibitory action at low micromolar concentrations on human isoforms, but only four derivatives (1e, 1f, 1h, 1i) inhibited the bovine enzyme. The bromo derivative (1f) was found to be strongest inhibitor of all three enzymes with KI values of 0.023, 0.044 and 20.57 µM for hCA-I, hCA-II and bCA, respectively. Results of our study will make valuable contributions to carbonic anhydrase inhibition studies for further investigations since inhibitors of this enzyme are important molecules for medicinal chemistry.
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6
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Işık K, Soydan E. Purification and characterisation of glutathione reductase from scorpionfish (scorpaena porcus) and investigation of heavy metal ions inhibition. J Enzyme Inhib Med Chem 2023; 38:2167078. [PMID: 36938699 PMCID: PMC10035961 DOI: 10.1080/14756366.2023.2167078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/21/2023] Open
Abstract
In the current study, glutathione reductase was purified from Scorpion fish (Scorpaena porcus) liver tissue and the effects of heavy metal ions on the enzyme activity were determined. The purification process consisted of three stages; preparation of the homogenate, ammonium sulphate precipitation and affinity chromatography purification. At the end of these steps, the enzyme was purified 25.9-fold with a specific activity of 10.479 EU/mg and a yield of 28.3%. The optimum pH was found to be 6.5, optimum substrate concentration was 2 mM NADPH and optimum buffer was 300 mM KH2PO4. After purification, inhibition effects of Mn+2, Cd+2, Ni+2, and Cr3+, as heavy metal ions were investigated. IC50 values of the heavy metals were calculated as 2.4 µM, 30 µM, 135 µM and 206 µM, respectively.
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Affiliation(s)
- Kübra Işık
- Department of Agricultural Biotechnology, Faculty of Agriculture, Ondokuz Mayıs University, Samsun, Turkey
| | - Ercan Soydan
- Department of Agricultural Biotechnology, Faculty of Agriculture, Ondokuz Mayıs University, Samsun, Turkey
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7
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MM/GBSA prediction of relative binding affinities of carbonic anhydrase inhibitors: effect of atomic charges and comparison with Autodock4 Zn. J Comput Aided Mol Des 2023; 37:167-182. [PMID: 36930332 PMCID: PMC10050039 DOI: 10.1007/s10822-023-00499-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Accepted: 02/16/2023] [Indexed: 03/18/2023]
Abstract
Carbonic anhydrase is an attractive drug target for the treatment of many diseases. This paper examines the ability of end-state MM/GBSA methods to rank inhibitors of carbonic anhydrase in terms of their binding affinities. The MM/GBSA binding energies were evaluated using different atomic charge schemes (Mulliken, ESP and NPA) at different levels of theories, including Hartree-Fock, B3LYP-D3(BJ), and M06-2X with the 6-31G(d,p) basis set. For a large test set of 32 diverse inhibitors, the use of B3LYP-D3(BJ) ESP atomic charges yielded the strongest correlation with experiment (R2 = 0.77). The use of the recently enhanced Autodock Vina and zinc optimised AD4Zn force field also predicted ligand binding affinities with moderately strong correlation (R2 = 0.64) at significantly lower computational cost. However, the docked poses deviate significantly from crystal structures. Overall, this study demonstrates the applicability of docking to estimate ligand binding affinities for a diverse range of CA inhibitors, and indicates that more theoretically robust MM/GBSA simulations show promise for improving the accuracy of predicted binding affinities, as long as a validated set of parameters is used.
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8
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Arslan T, Senturk M, Karagoz L, Karagoz Y, Ekinci D, Efe A, Türkoğlu EA, Uras F. Synthesis
, in vitro
and
in silico
Biological Studies of Sulfonamide Chalcones as Esterase Inhibitors. ChemistrySelect 2022. [DOI: 10.1002/slct.202202993] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Affiliation(s)
- Tayfun Arslan
- Department of Chemistry Faculty of Science and Art Giresun University 28200 Giresun Türkiye
| | - Murat Senturk
- Department of Biochemistry Faculty of Pharmacy Agri Ibrahim Cecen University 04100 Agri Türkiye
| | - Lütfi Karagoz
- Department of Biochemistry Faculty of Pharmacy Marmara University 34668 Istanbul Türkiye
| | - Yalcin Karagoz
- Department of Biochemistry Faculty of Pharmacy Agri Ibrahim Cecen University 04100 Agri Türkiye
| | - Deniz Ekinci
- Department of Agricultural Biotechnology Faculty of Agriculture Ondokuz Mayıs University 55139 Samsun Türkiye
| | - Asiye Efe
- Institute of Graduate Education Agri Ibrahim Cecen University 04100 Agri Türkiye
| | - Emir Alper Türkoğlu
- Department of Pharmaceutical Biotechnology Faculty of Pharmacy University of Health Sciences Turkey 34668 Istanbul Türkiye
| | - Fikriye Uras
- Department of Biochemistry Faculty of Pharmacy Marmara University 34668 Istanbul Türkiye
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9
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Yadav PR, Basha SH, Pindi PK. Role of Thr199 residue in human β-carbonic anhydrase-II pH-dependent activity elucidated by microsecond simulation analysis. J Biomol Struct Dyn 2022; 40:5016-5025. [DOI: 10.1080/07391102.2020.1865203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Pulala Raghuveer Yadav
- Department of Biotechnology, Indian Institute of Technology Hyderabad, Sangareddy, Telangana, India
| | | | - Pavan Kumar Pindi
- Department of Microbiology, Palamuru University, Mahabubnagar, Telangana, India
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10
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Orhan F, Senturk M, Genisel M. A new carbonic anhydrase identified in the Gram-negative bacterium (Chromohalobacter sp.) and the interaction of anions with the enzyme. Comp Biochem Physiol C Toxicol Pharmacol 2022; 254:109290. [PMID: 35114393 DOI: 10.1016/j.cbpc.2022.109290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/16/2021] [Revised: 01/20/2022] [Accepted: 01/26/2022] [Indexed: 11/19/2022]
Abstract
In this study, the characterization and inhibition characteristic of α-class carbonic anhydrase from Chromohalobacter (ChCA) was documented for the first time. The carbonic anhydrase enzyme had 47.77% yield and 54.45-fold purity. The specific activity of the enzyme was determined as 318.52 U/mg proteins. Alternative substrate (4-nitrophenyl trifluoroacetate, 4-nitrophenyl phosphate, 4-nitrophenyl sulphate and 4-nitrophenyl acetate) were tested for the enzyme. KM and Vmax values for 4-nitrophenyl acetate were 4.57 mM and 4.29 EU/mL and for 4-nitrophenyl trifluoroacetate were 2.39 mM and 2.41 EU/mL. The anions, Cl-, NO2-, NO3-, Br-, ClO3-, ClO4-, I-, CO32- and SO42-, inhibited the ChCA hydratase activity. Among nine anions, the strongest inhibitor activities were obtained with micro molar concentrations of NO2-, NO3-, Br-, I-, CO32- (KI values of 160-255 μM). Other four anions tested (Cl-, ClO3-, ClO4- and SO42-) showed moderate inhibitory activities (KI values of 680-813.5 μM). The results obtained demonstrate that the anions we tested inhibit the Chromohalobacter CA (ChCA) enzyme as in other α-CAs in mammals; however, the susceptibility of ChCA resulted from anions differed significantly from that of other organism CAs.
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Affiliation(s)
- Furkan Orhan
- Agri Ibrahim Cecen University, Art and Science Faculty, Molecular Biology Department, 4100 Agri, Turkey; Agri Ibrahim Cecen University, Central Research and Application Laboratory, 4100 Agri, Turkey.
| | - Murat Senturk
- Agri Ibrahim Cecen University, Pharmacy Faculty, Department of Biochemistry, 4100 Agri, Turkey
| | - Mucip Genisel
- Agri Ibrahim Cecen University, Central Research and Application Laboratory, 4100 Agri, Turkey; Agri Ibrahim Cecen University, Pharmacy Faculty, Department of Pharmaceutical Botany, 04100 Agri, Turkey
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11
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Çakmak R, Başaran E, Şentürk M. Synthesis, characterization, and biological evaluation of some novel Schiff bases as potential metabolic enzyme inhibitors. Arch Pharm (Weinheim) 2022; 355:e2100430. [PMID: 34994010 DOI: 10.1002/ardp.202100430] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Revised: 12/09/2021] [Accepted: 12/21/2021] [Indexed: 01/02/2023]
Abstract
In this study, a series of novel Schiff base derivatives containing a pyrazolone ring (2a-e) were designed, successfully synthesized for the first time, and characterized by elemental analysis and some spectroscopic methods. These compounds were tested for their inhibitory activities on acetylcholinesterase (AChE), butyrylcholinesterase (BChE), and the human carbonic anhydrase isoenzymes I and II (hCA I and II). All synthesized molecules indicated significant inhibition effects with IC50 values ranging from 14.15 to 107.62 nM against these enzymes. Compound 2d showed the most potent inhibitory activity among the tested molecules toward AChE and BChE (IC50 = 15.07 and 14.15 nM) compared to the standard drug neostigmine. We determined that the IC50 values of the tested molecules ranged between 16.86 and 57.96 nM for hCA I and 15.24-46.21 nM for hCA II. As a consequence, we may say that some of the Schiff base derivatives may be used as potential drug candidates in later studies.
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Affiliation(s)
- Reşit Çakmak
- Medical Laboratory Techniques Program, Vocational School of Health Services, Batman University, Batman, Turkey
| | - Eyüp Başaran
- Department of Chemistry and Chemical Processing Technologies, Vocational School of Technical Sciences, Batman University, Batman, Turkey
| | - Murat Şentürk
- Department of Biochemistry, Pharmacy Faculty, Ağrı Ibrahim Çecen University, Ağrı, Turkey
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12
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Çakır V, Arslan T. Synthesis and biological evaluation of new silicon(IV) phthalocyanines as carbonic anhydrase and cholinesterase inhibitors. Inorganica Chim Acta 2022. [DOI: 10.1016/j.ica.2021.120678] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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13
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Petrou A, Fesatidou M, Geronikaki A. Thiazole Ring-A Biologically Active Scaffold. Molecules 2021; 26:3166. [PMID: 34070661 PMCID: PMC8198555 DOI: 10.3390/molecules26113166] [Citation(s) in RCA: 88] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 05/15/2021] [Accepted: 05/20/2021] [Indexed: 11/16/2022] Open
Abstract
BACKGROUND Thiazole is a good pharmacophore nucleus due to its various pharmaceutical applications. Its derivatives have a wide range of biological activities such as antioxidant, analgesic, and antimicrobial including antibacterial, antifungal, antimalarial, anticancer, antiallergic, antihypertensive, anti-inflammatory, and antipsychotic. Indeed, the thiazole scaffold is contained in more than 18 FDA-approved drugs as well as in numerous experimental drugs. OBJECTIVE To summarize recent literature on the biological activities of thiazole ring-containing compounds Methods: A literature survey regarding the topics from the year 2015 up to now was carried out. Older publications were not included, since they were previously analyzed in available peer reviews. RESULTS Nearly 124 research articles were found, critically analyzed, and arranged regarding the synthesis and biological activities of thiazoles derivatives in the last 5 years.
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Affiliation(s)
| | | | - Athina Geronikaki
- School of Pharmacy, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece; (A.P.); (M.F.)
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14
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Yadav PR, Hussain Basha S, Satyanarayana SDV, Pindi PK. Microsecond simulation analysis of carbonic anhydrase - II in complex with (+)-cathechin revealed molecular interactions responsible for its amelioration effect on fluoride toxicity. J Biomol Struct Dyn 2021; 40:7469-7482. [PMID: 33719850 DOI: 10.1080/07391102.2021.1898471] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
Fluorosis is a chronic condition caused by overexposure to fluoride, marked by impaired dental, skeletal, and non-skeletal health. In presence of excess fluoride ions, in severe cases calcification of the ligaments observed. Earlier studies have suggested that the disruption of carbonic anhydrase activity via ionic homeostasis change was associated with F toxicity. In a recent study, it was demonstrated that Tamarind fruit extract was effective in increasing the urinary F excretion in male Wistar rats via studying the mRNA expression of carbonic anhydrase II (CA II) in kidney homogenates using western blotting, immunohistochemistry and quantitative Realtime PCR based studies. We have carried out this study to understand the detailed molecular level interactions responsible for this tamarind extract based (+)-cathechin compound towards lowering the F toxicity via targeting CA-II. From our study, it was revealed that due to the ability of (+)-cathechin compound to bind tightly filling complete available space at the catalytically important site forming metal coordinated ionic bonds with His94, His96 and His119 residues helps in restricting F ions to interact with Zn ion located at the core of catalytic site responsible for its functionality. On the other hand, interaction of (+)-cathechin compound with Gln92 was observed to be critically important towards inducing conformational changes in CA-II, thus allowing (+)-cathechin compound to burry even deeply inside the catalytic site.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Pulala Raghuveer Yadav
- Department of Biotechnology, Indian Institute of Technology Hyderabad, Hyderabad, Telangana, India
| | | | | | - Pavan Kumar Pindi
- Department of Microbiology, Palamuru University, Mahabubnagar, Telangana, India
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15
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Dizdaroglu Y, Albay C, Arslan T, Ece A, Turkoglu EA, Efe A, Senturk M, Supuran CT, Ekinci D. Design, synthesis and molecular modelling studies of some pyrazole derivatives as carbonic anhydrase inhibitors. J Enzyme Inhib Med Chem 2020; 35:289-297. [PMID: 31797703 PMCID: PMC6896446 DOI: 10.1080/14756366.2019.1695791] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Revised: 11/11/2019] [Accepted: 11/13/2019] [Indexed: 11/08/2022] Open
Abstract
In this study, newly synthesised compounds 6, 8, 10 and other compounds (1-5, 7 and 9) and their inhibitory properties against the human isoforms hCA I and hCA II were reported for the first time. Compounds 1-10 showed effective inhibition profiles with KI values in the range of 5.13-16.9 nM for hCA I and of 11.77-67.39 nM against hCA II, respectively. Molecular docking studies were also performed with Glide XP to get insight into the inhibitory activity and to evaluate the binding modes of the synthesised compounds to hCA I and II. More rigorous binding energy calculations using MM-GBSA protocol which agreed well with observed activities were then performed to improve the docking scores. Results of in silico calculations showed that all compounds obey drug likeness properties. The new compounds reported here might be promising lead compounds for the development of new potent inhibitors as alternatives to classical hCA inhibitors.
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Affiliation(s)
- Yazgı Dizdaroglu
- Faculty of Science and Arts, Giresun University, Giresun, Turkey
| | - Canan Albay
- Faculty of Science and Arts, Giresun University, Giresun, Turkey
| | - Tayfun Arslan
- Faculty of Science and Arts, Giresun University, Giresun, Turkey
- Technical Sciences Vocational School, Giresun University, Giresun, Turkey
| | - Abdulilah Ece
- Faculty of Pharmacy, Biruni University, Istanbul, Turkey
| | - Emir A. Turkoglu
- Faculty of Pharmacy, University of Health Sciences, Istanbul, Turkey
| | - Asiye Efe
- Faculty of Pharmacy, Agri Ibrahim Cecen University, Agri, Turkey
| | - Murat Senturk
- Faculty of Pharmacy, Agri Ibrahim Cecen University, Agri, Turkey
| | | | - Deniz Ekinci
- Ondokuz Mayis University, Faculty of Agriculture, Department of Agricultural Biotechnology, Samsun, Turkey
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16
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Nekvinda J, Kugler M, Holub J, El Anwar S, Brynda J, Pospíšilová K, Růžičková Z, Řezáčová P, Grüner B. Direct Introduction of an Alkylsulfonamido Group on C‐sites of Isomeric Dicarba‐
closo
‐dodecaboranes: The Influence of Stereochemistry on Inhibitory Activity against the Cancer‐Associated Carbonic Anhydrase IX Isoenzyme. Chemistry 2020; 26:16541-16553. [DOI: 10.1002/chem.202002809] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Revised: 07/28/2020] [Indexed: 12/30/2022]
Affiliation(s)
- Jan Nekvinda
- Department of Synthesis Institute of Inorganic Chemistry of, the Czech Academy of Sciences 25068 Řež Czech Republic
| | - Michael Kugler
- Institute of Molecular Genetics Czech Academy of Sciences Vídeňská 1083 14220 Prague 4 Czech Republic
- Institute of Organic Chemistry and Biochemistry Czech Academy of, Sciences Flemingovo nám. 2 16610 Prague Czech Republic
| | - Josef Holub
- Department of Synthesis Institute of Inorganic Chemistry of, the Czech Academy of Sciences 25068 Řež Czech Republic
| | - Suzan El Anwar
- Department of Synthesis Institute of Inorganic Chemistry of, the Czech Academy of Sciences 25068 Řež Czech Republic
| | - Jiří Brynda
- Institute of Molecular Genetics Czech Academy of Sciences Vídeňská 1083 14220 Prague 4 Czech Republic
- Institute of Organic Chemistry and Biochemistry Czech Academy of, Sciences Flemingovo nám. 2 16610 Prague Czech Republic
| | - Klára Pospíšilová
- Institute of Organic Chemistry and Biochemistry Czech Academy of, Sciences Flemingovo nám. 2 16610 Prague Czech Republic
| | - Zdeňka Růžičková
- Department of General and Inorganic Chemistry Faculty of Chemical Technology University of Pardubice Studentská 573 53210 Pardubice Czech Republic
| | - Pavlína Řezáčová
- Institute of Molecular Genetics Czech Academy of Sciences Vídeňská 1083 14220 Prague 4 Czech Republic
- Institute of Organic Chemistry and Biochemistry Czech Academy of, Sciences Flemingovo nám. 2 16610 Prague Czech Republic
| | - Bohumír Grüner
- Department of Synthesis Institute of Inorganic Chemistry of, the Czech Academy of Sciences 25068 Řež Czech Republic
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17
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Geng S, Jiang Z, Ma H, Pu P, Liu B, Liang G. Fabrication and characterization of novel edible Pickering emulsion gels stabilized by dihydromyricetin. Food Chem 2020; 343:128486. [PMID: 33160778 DOI: 10.1016/j.foodchem.2020.128486] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2020] [Revised: 10/20/2020] [Accepted: 10/23/2020] [Indexed: 12/17/2022]
Abstract
The edible Pickering emulsion gels stabilized by dihydromyricetin were fabricated for the first time. To clarify the formation mechanism, dihydromyricetin particles were first characterized. Then, the factors influencingthe gel formation, microstructure and mechanical properties were investigated. Finally, the molecular dynamics simulation was performed to clarify the microscopic behavior of dihydromyricetin in an oil-water system. The results indicated that dihydromyricetin particles occurred as regular rod-shaped crystals with amphiphilicity. They formed a 3D steric network by overlapping with each other, separating oil droplets and stabilizing O/W emulsion gels. The dihydromyricetin concentration and oil-phase weight fraction had a significant influence on the formation and mechanical properties of gels. The alkali and low ionic strength conditions benefited the gel stability. The molecular dynamics showed that dihydromyricetin could spontaneously and quickly transfer to the oil-water interface, reduce the interfacialtension and enhance the interface thickness, which agreed with the experimental results.
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Affiliation(s)
- Sheng Geng
- School of Food Science, Henan Institute of Science and Technology, Xinxiang 453003, China; Key Laboratory of Biorheological Science and Technology, Ministry of Education, Bioengineering College, Chongqing University, Chongqing 400044, China
| | - Zhaojing Jiang
- School of Food Science, Henan Institute of Science and Technology, Xinxiang 453003, China
| | - Hanjun Ma
- School of Food Science, Henan Institute of Science and Technology, Xinxiang 453003, China
| | - Pei Pu
- Key Laboratory of Biorheological Science and Technology, Ministry of Education, Bioengineering College, Chongqing University, Chongqing 400044, China
| | - Benguo Liu
- School of Food Science, Henan Institute of Science and Technology, Xinxiang 453003, China.
| | - Guizhao Liang
- Key Laboratory of Biorheological Science and Technology, Ministry of Education, Bioengineering College, Chongqing University, Chongqing 400044, China.
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18
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Akin Kazancioglu E, Senturk M. Synthesis of N-phenylsulfonamide derivatives and investigation of some esterase enzymes inhibiting properties. Bioorg Chem 2020; 104:104279. [PMID: 32980674 DOI: 10.1016/j.bioorg.2020.104279] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2020] [Revised: 08/11/2020] [Accepted: 09/11/2020] [Indexed: 11/30/2022]
Abstract
In this study, synthesis of nine N-phenylsulfonamide derivatives was designed by starting from aniline, which is the simplest aromatic amine. These compounds were obtained in yields between 69 and 95%. Inhibitory properties of synthesized compounds on carbonic anhydrase I (CA I), CA II isoenzymes, acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) enzymes were investigated. Inhibitors of CA isoenzymes are important therapeutic targets, particularly due to their preventive/activation potential in the treatment of diseases such as edema, glaucoma, cancer and osteoporosis. Cholinesterase inhibitors are valuable compounds that can be used in many different therapeutic applications, including Alzheimer's disease. The compound 8 for CA I, AChE and BChE, 2 for CA II showed a very active inhibition profile (KI 45.7 ± 0.46 for CA I, 33.5 ± 0.38 nM for CA II, 31.5 ± 0.33 nM for AChE and 24.4 ± 0.29 nM for BChE). The results indicate that these N-phenyl-sulfonamide derivatives are potent CA and cholinesterases and new potential drugs.
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Affiliation(s)
- Elif Akin Kazancioglu
- Vocational High School of Health Services, Kilis 7 Aralik University, 79000 Kilis, Turkey; Advanced Technology Application and Research Center, Kilis 7 Aralik University, 79000 Kilis, Turkey.
| | - Murat Senturk
- Pharmacy Faculty, Agri Ibrahim Cecen University, 04100 Agri, Turkey
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19
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Cavdar H, Senturk M, Guney M, Durdagi S, Kayik G, Supuran CT, Ekinci D. Inhibition of acetylcholinesterase and butyrylcholinesterase with uracil derivatives: kinetic and computational studies. J Enzyme Inhib Med Chem 2019; 34:429-437. [PMID: 30734597 PMCID: PMC6327988 DOI: 10.1080/14756366.2018.1543288] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Revised: 10/26/2018] [Accepted: 10/30/2018] [Indexed: 11/18/2022] Open
Abstract
Acetylcholinesterase (AChE) and Butyrylcholinesterase (BuChE) inhibitors are interesting compounds for different therapeutic applications, among which Alzheimer's disease. Here, we investigated the inhibition of these cholinesterases with uracil derivatives. The mechanism of inhibition of these enzymes was observed to be due to obstruction of the active site entrance by the inhibitors scaffold. Molecular docking and molecular dynamics (MD) simulations demonstrated the possible key interactions between the studied ligands and amino acid residues at different regions of the active sites of AChE and BuChE. Being diverse of the classical AChE and BuChE inhibitors, the investigated uracil derivatives may be used as lead molecules for designing new therapeutically effective enzyme inhibitors.
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Affiliation(s)
- Huseyin Cavdar
- Department of Mathematics and Science Education, Education Faculty, Dumlupınar University, Kutahya, Turkey
| | - Murat Senturk
- Department of Basic Sciences of Pharmacy, Pharmacy Faculty, Agri Ibrahim Cecen University, Agri, Turkey
| | - Murat Guney
- Department of Chemistry, Science and Art Faculty, Agri Ibrahim Cecen University, Agri, Turkey
| | - Serdar Durdagi
- Department of Biophysics, Computational Biology and Molecular Simulations Laboratory, Bahcesehir University, School of Medicine, Istanbul, Turkey
| | - Gulru Kayik
- Department of Biophysics, Computational Biology and Molecular Simulations Laboratory, Bahcesehir University, School of Medicine, Istanbul, Turkey
| | - Claudiu T. Supuran
- Department of Neurofarba, University of Florence, Sesto Fiorentino (Firenze), Italy
| | - Deniz Ekinci
- Department of Agricultural Biotechnology, Agriculture Faculty, Ondokuz Mayis University, Samsun, Turkey
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20
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Synthesis of 1,2,4-triazole-5-on derivatives and determination of carbonic anhydrase II isoenzyme inhibition effects. Bioorg Chem 2019; 83:170-179. [DOI: 10.1016/j.bioorg.2018.10.042] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Revised: 10/19/2018] [Accepted: 10/22/2018] [Indexed: 01/04/2023]
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21
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A Facile and Eco-Friendly Method for the Synthesis of Sulfonamide and Sulfonate Carboxylic Acid Derivatives—X-ray Structure, Hirshfeld Analysis and Spectroscopic Characterizations. CRYSTALS 2019. [DOI: 10.3390/cryst9010035] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
The search for a simple and efficient method for the synthesis of sulfonamide and sulfonate derivatives under mild and eco-friendly conditions is of continuing interest. Sulfonyl chlorides are still the best choice as starting materials for the preparation of target products. Here, we report a simple, efficient and eco-friendly method for the synthesis of sulfonamide and sulfonate carboxylic acid derivatives under green conditions using water and sodium carbonate as HCl scavengers to produce the products with high yields and purities. Two derivatives, 4-(tosyloxy)benzoic acid (5a) and 4-((4-methylphenyl)sulfonamido)benzoic acid (5b), were reacted with 2-morpholinoethan-1-amine under green conditions, where OxymaPure/diisopropylcarbodiimide (DIC) was used as a coupling reagent and 2-MeTHF as a solvent to give the target product with high yield and purity. nuclear magnetic resonance (NMR) and elemental analysis confirmed the structures of all obtained products. X-ray crystallography confirmed the structures of products 4b, 4c and 7a. The molecular packing of the three compounds (4b, 4c and 7a) was analyzed using Hirshfeld topology analysis. Mainly, H…O hydrogen bonding interactions dominated the packing. These methods of preparation and coupling merit further attention for the development of new derivatives that might have significant biological applications.
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22
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Nazarshodeh E, Sheikhpour R, Gharaghani S, Sarram MA. A novel proteochemometrics model for predicting the inhibition of nine carbonic anhydrase isoforms based on supervised Laplacian score and k-nearest neighbour regression. SAR AND QSAR IN ENVIRONMENTAL RESEARCH 2018; 29:419-437. [PMID: 29882433 DOI: 10.1080/1062936x.2018.1447995] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2017] [Accepted: 02/28/2018] [Indexed: 06/08/2023]
Abstract
Carbonic anhydrases (CAs) are essential enzymes in biological processes. Prediction of the activity of compounds towards CA isoforms could be evaluated by computational techniques to discover a novel therapeutic inhibitor. Studies such as quantitative structure-activity relationships (QSARs), molecular docking and pharmacophore modelling have been carried out to design potent inhibitors. Unfortunately, QSAR does not consider the information of target space in the model. We successfully developed an in silico proteochemometrics model that simultaneously uses target and ligand descriptors to predict the activities of CA inhibitors. Herein, a strong predictive model was built for the prediction of protein-ligand binding affinity between nine human CA isoforms and 549 ligands. We applied descriptors obtained from the PROFEAT webserver for the proteins. Ligands were encoded by descriptors from PaDEL-Descriptor software. Supervised Laplacian score (SLS) and particle swarm optimization were used for feature selection. Models were derived using k-nearest neighbour (KNN) regression and a kernel smoother model. The predictive ability of the models was evaluated by an external validation test. Statistical results (Q2ext = 0.7806, r2test = 0.7811 and RMSEtest = 0.5549) showed that the model generated using SLS and KNN regression outperformed the other models. Consequently, the selectivity of compounds towards these enzymes will be predicted prior to synthesis.
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Affiliation(s)
- E Nazarshodeh
- a Laboratory of Bioinformatics and Drug Design (LBD), Institute of Biochemistry and Biophysics , University of Tehran , Tehran , Iran
| | - R Sheikhpour
- b Department of Computer Engineering , Yazd University , Yazd , Iran
| | - S Gharaghani
- a Laboratory of Bioinformatics and Drug Design (LBD), Institute of Biochemistry and Biophysics , University of Tehran , Tehran , Iran
| | - M A Sarram
- b Department of Computer Engineering , Yazd University , Yazd , Iran
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23
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Chiaramonte N, Romanelli MN, Teodori E, Supuran CT. Amino Acids as Building Blocks for Carbonic Anhydrase Inhibitors. Metabolites 2018; 8:E36. [PMID: 29795039 PMCID: PMC6027070 DOI: 10.3390/metabo8020036] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2018] [Revised: 05/23/2018] [Accepted: 05/23/2018] [Indexed: 02/06/2023] Open
Abstract
Carbonic anhydrases (CAs) are a superfamily of metalloenzymes widespread in all life, classified into seven genetically different families (α⁻θ). These enzymes catalyse the reversible hydration of carbonic anhydride (CO₂), generating bicarbonate (HCO₃-) and protons (H⁺). Fifteen isoforms of human CA (hCA I⁻XV) have been isolated, their presence being fundamental for the regulation of many physiological processes. In addition, overexpression of some isoforms has been associated with the outbreak or progression of several diseases. For this reason, for a long time CA inhibitors (CAIs) have been used in the control of glaucoma and as diuretics. Furthermore, the search for new potential CAIs for other pharmacological applications is a very active field. Amino acids constitute the smallest fundamental monomers of protein and, due to their useful bivalent chemical properties, are widely used in organic chemistry. Both proteinogenic and non-proteinogenic amino acids have been extensively used to synthesize CAIs. This article provides an overview of the different strategies that have been used to design new CAIs containing amino acids, and how these bivalent molecules influence the properties of the inhibitors.
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Affiliation(s)
- Niccolò Chiaramonte
- Department of Neuroscience, Psychology, Drug Research and Child's Health, Section of Pharmaceutical and Nutraceutical Sciences, University of Florence, Via Ugo Schiff 6, 50019 Sesto Fiorentino, Italy.
| | - Maria Novella Romanelli
- Department of Neuroscience, Psychology, Drug Research and Child's Health, Section of Pharmaceutical and Nutraceutical Sciences, University of Florence, Via Ugo Schiff 6, 50019 Sesto Fiorentino, Italy.
| | - Elisabetta Teodori
- Department of Neuroscience, Psychology, Drug Research and Child's Health, Section of Pharmaceutical and Nutraceutical Sciences, University of Florence, Via Ugo Schiff 6, 50019 Sesto Fiorentino, Italy.
| | - Claudiu T Supuran
- Department of Neuroscience, Psychology, Drug Research and Child's Health, Section of Pharmaceutical and Nutraceutical Sciences, University of Florence, Via Ugo Schiff 6, 50019 Sesto Fiorentino, Italy.
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24
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Banuppriya G, Sribalan R, Padmini V. Synthesis and characterization of curcumin-sulfonamide hybrids: Biological evaluation and molecular docking studies. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2017.10.097] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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25
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Arslan T, Biyiklioglu Z, Şentürk M. The synthesis of axially disubstituted silicon phthalocyanines, their quaternized derivatives and first inhibitory effect on human cytosolic carbonic anhydrase isozymes hCA I and II. RSC Adv 2018; 8:10172-10178. [PMID: 35540484 PMCID: PMC9078821 DOI: 10.1039/c7ra13674a] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2017] [Accepted: 03/04/2018] [Indexed: 11/23/2022] Open
Abstract
In this study a novel silicon(iv) phthalocyanine bearing [(2E)-3-[4-(dimethylamino)phenyl]-1-(4-phenoxy)prop-2-en-1-one] group and its quaternized derivative at their axial positions were synthesized for the first time. Axially disubstituted silicon(iv) phthalocyanines were also characterized by various spectroscopic techniques. The inhibition of two human cytosolic carbonic anhydrase (hCA, EC 4.2.1.1) isozymes I and II, with axially disubstituted silicon phthalocyanines and their quaternized derivatives were investigated by using the esterase assay, with 4-nitrophenyl acetate as substrate. Silicon phthalocyanines ZM-1-Si, ZM-5-Si, ZT-Si and their quaternized derivatives ZM-1-SiQ, ZM-5-SiQ, ZT-SiQ showed IC50 values in the range of 0.0178–0.1653 μM for hCA I and of 0.0172–0.1212 μM against hCA II, respectively. This study is the first example of carbonic anhydrase enzyme inhibition of phthalocyanines. In this study a novel silicon(iv) phthalocyanine bearing [(2E)-3-[4-(dimethylamino)phenyl]-1-(4-phenoxy)prop-2-en-1-one] group and its quaternized derivative at their axial positions were synthesized for the first time.![]()
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Affiliation(s)
- Tayfun Arslan
- Department of Chemistry
- Faculty of Sciences
- Giresun
- Turkey
- Department of Textile
| | - Zekeriya Biyiklioglu
- Department of Chemistry
- Faculty of Science
- Karadeniz Technical University
- 61080 Trabzon
- Turkey
| | - Murat Şentürk
- Department of Basic Sciences of Pharmacy
- Faculty of Pharmacy
- Agri Ibrahim Cecen University
- 04100 Agri
- Turkey
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26
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Kong W, Romo D. Diastereo- and Enantioselective Synthesis of Bi- and Tricyclic N-Heterocycle-Fused β-Lactones. J Org Chem 2017; 82:13161-13170. [DOI: 10.1021/acs.joc.7b02235] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Weixu Kong
- Department of Chemistry & Biochemistry, Baylor University, Waco, Texas 76710, United States
| | - Daniel Romo
- Department of Chemistry & Biochemistry, Baylor University, Waco, Texas 76710, United States
- Department of Chemistry, Texas A&M University, College Station, Texas 77840, United States
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27
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Zengin Kurt B, Sonmez F, Durdagi S, Aksoydan B, Ekhteiari Salmas R, Angeli A, Kucukislamoglu M, Supuran CT. Synthesis, biological activity and multiscale molecular modeling studies for coumaryl-carboxamide derivatives as selective carbonic anhydrase IX inhibitors. J Enzyme Inhib Med Chem 2017; 32:1042-1052. [PMID: 28776440 PMCID: PMC6009903 DOI: 10.1080/14756366.2017.1354857] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
Abstract
New coumaryl-carboxamide derivatives with the thiourea moiety as a linker between the alkyl chains and/or the heterocycle nucleus were synthesized and their inhibitory activity against the human carbonic anhydrase (hCA) isoforms hCA I, II, VII and IX were evaluated. While the hCA I, II and VII isoforms were not inhibited by the investigated compounds, the tumour-associated isoform hCA IX was inhibited in the high nanomolar range. 2-Oxo-N-((2-(pyrrolidin-1-yl)ethyl)carbamothioyl)-2H-chromene-3-carboxamide (e11) exhibited a selective inhibitory action against hCA IX with the Ki of 107.9 nM. In order to better understand the inhibitory profiles of studied molecules, multiscale molecular modeling approaches were used. Different molecular docking algorithms were used to investigate binding poses and predicted binding energies of studied compounds at the active sites of the CA I, II, VII and IX isoforms.
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Affiliation(s)
- Belma Zengin Kurt
- a Faculty of Pharmacy, Department of Pharmaceutical Chemistry , Bezmialem Vakıf University , Istanbul , Turkey
| | - Fatih Sonmez
- b Faculty of Arts and Science, Department of Chemistry , Sakarya University , Sakarya , Turkey
| | - Serdar Durdagi
- c Computational Biology and Molecular Simulations Laboratory, Department of Biophysics , School of Medicine, Bahcesehir University , Istanbul , Turkey
| | - Busecan Aksoydan
- c Computational Biology and Molecular Simulations Laboratory, Department of Biophysics , School of Medicine, Bahcesehir University , Istanbul , Turkey
| | - Ramin Ekhteiari Salmas
- c Computational Biology and Molecular Simulations Laboratory, Department of Biophysics , School of Medicine, Bahcesehir University , Istanbul , Turkey
| | - Andrea Angeli
- d Dipartimento Neurofarba, Sezione di ScienzeFarmaceutiche e Nutraceutiche , Università degli Studi di Firenze , Florence , Italy
| | - Mustafa Kucukislamoglu
- b Faculty of Arts and Science, Department of Chemistry , Sakarya University , Sakarya , Turkey
| | - Claudiu T Supuran
- d Dipartimento Neurofarba, Sezione di ScienzeFarmaceutiche e Nutraceutiche , Università degli Studi di Firenze , Florence , Italy
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28
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Arslan T, Türkoğlu EA, Şentürk M, Supuran CT. Synthesis and carbonic anhydrase inhibitory properties of novel chalcone substituted benzenesulfonamides. Bioorg Med Chem Lett 2016; 26:5867-5870. [PMID: 27884694 DOI: 10.1016/j.bmcl.2016.11.017] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2016] [Revised: 11/04/2016] [Accepted: 11/07/2016] [Indexed: 11/18/2022]
Abstract
Carbonic anhydrases (CAs, EC 4.2.1.1) are crucial metalloenzymes involved in many bioprocesses, through catalysis of the reversible hydration/dehydration process of CO2/HCO3-. The inhibition of human CA isoforms I and II with a new series of sulfonamide derivatives incorporating substituted chalcone moieties were studied in this study. All these newly synthesized sulfonamides demonstrated important inhibitory profiles to these CA isoforms with KIs in the range of 9.88 to 55.43nM, making these compounds interesting leads, with potential applications in medicinal chemistry.
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Affiliation(s)
- Tayfun Arslan
- Technical Sciences Vocational School, Giresun University, 28049 Giresun, Turkey.
| | - Emir Alper Türkoğlu
- Ağrı İbrahim Çeçen University, Department of Pharmaceutical Technology, 04100 Ağrı, Turkey
| | - Murat Şentürk
- Ağrı İbrahim Çeçen University, Science and Art Faculty, Chemistry Department, 04100 Ağrı, Turkey.
| | - Claudiu T Supuran
- Universitá degli Studi di Firenze, Dipartimento Neurofarba, Sezione di Scienze, Polo Scientifico, Via Ugo Schiff 6, 50019 Sesto Fiorentino, Florence, Italy.
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Arslan T, Çelik G, Çelik H, Şentürk M, Yaylı N, Ekinci D. Synthesis and Biological Evaluation of Novel Bischalcone Derivatives as Carbonic Anhydrase Inhibitors. Arch Pharm (Weinheim) 2016; 349:741-8. [DOI: 10.1002/ardp.201600122] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2016] [Revised: 06/10/2016] [Accepted: 06/22/2016] [Indexed: 01/30/2023]
Affiliation(s)
- Tayfun Arslan
- Technical Sciences Vocational School; Giresun University; Giresun Turkey
| | - Gonca Çelik
- Department of Chemistry; Karadeniz Technical University; Trabzon Turkey
| | - Habip Çelik
- Department of Chemistry; Agri Ibrahim Cecen University; Agri Turkey
| | - Murat Şentürk
- Department of Chemistry; Agri Ibrahim Cecen University; Agri Turkey
| | - Nurettin Yaylı
- Department of Pharmacy; Karadeniz Technical University; Trabzon Turkey
| | - Deniz Ekinci
- Department of Agricultural Biotechnology; Ondokuz Mayis University; Samsun Turkey
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30
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Şahin A, Şentürk M, Salmas RE, Durdagi S, Ayan A, Karagölge A, Mestanoğlu M. Investigation of inhibition of human glucose 6-phosphate dehydrogenase by some 99mTc chelators by in silico and in vitro methods. J Enzyme Inhib Med Chem 2016; 31:141-147. [PMID: 27143114 DOI: 10.1080/14756366.2016.1178735] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022] Open
Abstract
The inhibitory effects of methoxyisobutylisonitrile (MIBI), diethylene triamine pentaacetic acid (DTPA), dimercaptosuccinic acid (DMSA) and metilendifosfonat (MDP) on human erythrocyte glucose 6-phosphate dehydrogenase (hG6PD) activity were investigated. For this purpose, hG6PD was initially purified 557-fold at a yield of 51.43% using 2',5'-adenosine diphosphate (ADP) sepharose 4B affinity gel chromatography. The in vitro effects of these chelators on hG6PD enzyme were studied. IC50 values of MIBI, DTPA, DMSA and MDP were 0.056, 0.172, 0.274 and 0.175 mM, of hG6PD, respectively. It was detected in in vitro studies that the hG6PD enzyme is inhibited due to these radiopharmaceutical chelators. In addition to in vitro studies, in order to better understand the molecular mechanism of studied compounds, combined in silico approaches, including molecular docking and molecular dynamics (MD), simulations were successfully performed. MD simulations shed light on inhibition mechanisms of the individual inhibitors into the ligand-binding pocket of hG6PD. Essential amino acids for binding are also investigated using per-residue interaction analysis studies.
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Affiliation(s)
- Ali Şahin
- a Faculty of Medicine , Department of Nuclear Medicine, Ataturk University , Erzurum , Turkey
| | - Murat Şentürk
- b Science and Arts Faculty, Department of Chemistry, Agri Ibrahim Cecen University , Agri , Turkey
| | - Ramin E Salmas
- c School of Medicine, Department of Biophysics, Bahcesehir University , Istanbul , Turkey , and
| | - Serdar Durdagi
- c School of Medicine, Department of Biophysics, Bahcesehir University , Istanbul , Turkey , and
| | - Arif Ayan
- a Faculty of Medicine , Department of Nuclear Medicine, Ataturk University , Erzurum , Turkey
| | - Ali Karagölge
- a Faculty of Medicine , Department of Nuclear Medicine, Ataturk University , Erzurum , Turkey
| | - Mert Mestanoğlu
- d School of Medicine, Bahcesehir University , Istanbul , Turkey
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Yaseen R, Ekinci D, Senturk M, Hameed AD, Ovais S, Rathore P, Samim M, Javed K, Supuran CT. Pyridazinone substituted benzenesulfonamides as potent carbonic anhydrase inhibitors. Bioorg Med Chem Lett 2016; 26:1337-41. [PMID: 26804228 DOI: 10.1016/j.bmcl.2015.12.016] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2015] [Revised: 12/03/2015] [Accepted: 12/07/2015] [Indexed: 12/31/2022]
Abstract
A series of sulfonamide derivatives (2a-l) incorporating substituted pyridazinone moieties were investigated for the inhibition of two human cytosolic carbonic anhydrase isoforms, hCA I and hCA II. All these compounds, together with the clinically used sulfonamide acetazolamide were investigated as inhibitors of the physiologically relevant isozymes I and II. These sulfonamides showed very strong inhibition against all these isoforms with K(I)'s in the range of 0.98-8.5 nM which makes such molecules possible to be used as leads for discovery of novel effective CA inhibitors targeting other isoforms with medicinal chemistry applications.
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Affiliation(s)
- Raed Yaseen
- Department of Chemistry, Faculty of Science, Jamia Hamdard (Hamdard University), New Delhi 110 062, India
| | - Deniz Ekinci
- Ondokuz Mayıs University, Faculty of Agriculture, Department of Agricultural Biotechnology, 55139 Samsun, Turkey
| | - Murat Senturk
- Agri Ibrahim Cecen University, Science and Art Faculty, Chemistry Department, 04100 Agri, Turkey
| | - Alhamzah Dh Hameed
- Department of Chemistry, Faculty of Science, Jamia Hamdard (Hamdard University), New Delhi 110 062, India
| | - Syed Ovais
- Department of Chemistry, Faculty of Science, Jamia Hamdard (Hamdard University), New Delhi 110 062, India
| | - Pooja Rathore
- Department of Chemistry, Faculty of Science, Jamia Hamdard (Hamdard University), New Delhi 110 062, India
| | - Mohammed Samim
- Department of Chemistry, Faculty of Science, Jamia Hamdard (Hamdard University), New Delhi 110 062, India
| | - Kalim Javed
- Department of Chemistry, Faculty of Science, Jamia Hamdard (Hamdard University), New Delhi 110 062, India
| | - Claudiu T Supuran
- Università degli Studi di Firenze, Polo Scientifico, Laboratorio di Chimica Bioinorganica, Rm. 188, Via della Lastruccia 3, 50019 Sesto Fiorentino (Florence), Italy
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32
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Durdagi S, Korkmaz N, Işık S, Vullo D, Astley D, Ekinci D, Salmas RE, Senturk M, Supuran CT. Kinetic and docking studies of cytosolic/tumor-associated carbonic anhydrase isozymes I, II and IX with some hydroxylic compounds. J Enzyme Inhib Med Chem 2015; 31:1214-20. [DOI: 10.3109/14756366.2015.1114930] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- Serdar Durdagi
- Department of Biophysics, School of Medicine, Bahçeşehir University, Istanbul, Turkey,
| | - Neslihan Korkmaz
- Department of Chemistry, Science Faculty, Ege University, Izmir, Turkey,
| | - Semra Işık
- Department of Chemistry, Science & Art Faculty, Balikesir University, Balikesir, Turkey,
| | - Daniela Vullo
- Polo Scientifico, Laboratorio Di Chimica Bioinorganica, Università Degli Studi Di Firenze, Florence, Italy,
| | - Demet Astley
- Department of Chemistry, Science Faculty, Ege University, Izmir, Turkey,
| | - Deniz Ekinci
- Department of Agricultural Biotechnology, Faculty of Agriculture, Ondokuz Mayıs University, Samsun, Turkey, and
| | - Ramin E. Salmas
- Department of Biophysics, School of Medicine, Bahçeşehir University, Istanbul, Turkey,
| | - Murat Senturk
- Department of Chemistry, Art and Science Faculty, Ağrı Ibrahim Cecen University, Agri, Turkey
| | - Claudiu T. Supuran
- Polo Scientifico, Laboratorio Di Chimica Bioinorganica, Università Degli Studi Di Firenze, Florence, Italy,
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