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Synthesis, docking, ADMET prediction, cytotoxicity and antimicrobial activity of oxathiadiazole derivatives. Comput Biol Chem 2018; 77:226-239. [PMID: 30366286 DOI: 10.1016/j.compbiolchem.2018.10.008] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2018] [Revised: 09/29/2018] [Accepted: 10/10/2018] [Indexed: 11/23/2022]
Abstract
A series of molecules bearing oxathiadiazole, a five membered heterocyclic ring has been designed, synthesized and screened for antimicrobial activity. Molecules, 1a, 1b, 1d, 3a-b and 4a-b were found to be highly active (MIC value upto 1.5 μg/mL) against different human pathogens, namely S. aureus, B. cerus, P. aeruginosa and E. coli. Some of the compounds, 1a, 1b and 1d have also shown the antifungal activity (MIC value upto 6.2 μg/mL) against Candida albicans, Candida glubrate and Candida crusei. During in vitro cytotoxicity study, the oxathiadiazole derivatives showed less toxicity than the reference used against PBM, CEM and Vero (African green monkey kidney) cell lines. Docking studies suggested that all designed ligands interacted well within active site of PDF enzyme (PDB ID: 1G2A). Oxathiadiazole ring of all ligands formed H-bond with amino acid Leu91 at a distance ranging between 2.5-2.8 Å and also exhibited π - + and π - π interactions with amino acid residues Arg97 and His132, respectively. In silico ADMET evaluations of compounds showed more than 90% intestinal absorption for all compounds except 4b (87.45%), which too was greater than the reference drugs sulfamethoxazole (76.46%) and chloramphenicol (69.94%). TOPKAT results also supported the lower cytotoxicity of all compounds.
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2
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Ghrab S, Aroua L, Beji M. One-pot Three Component Synthesis of ω-(oxathiolan-2-thion-5-yl)-α-oxazolidin-2-ones. J Heterocycl Chem 2017. [DOI: 10.1002/jhet.2834] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Saad Ghrab
- Laboratory of Structural Organic Chemistry, Department of Chemistry, Faculty of Sciences of Tunis; Tunis El-Manar University; El Manar I 2092 Tunis Tunisia
| | - Lotfi Aroua
- Laboratory of Structural Organic Chemistry, Department of Chemistry, Faculty of Sciences of Tunis; Tunis El-Manar University; El Manar I 2092 Tunis Tunisia
- Department of Chemistry; College of Sciences, Qassim University; Buraida Qassim Saudi Arabia
| | - Mohamed Beji
- Laboratory of Structural Organic Chemistry, Department of Chemistry, Faculty of Sciences of Tunis; Tunis El-Manar University; El Manar I 2092 Tunis Tunisia
- Preparatory Institute for Engineering Studies of Tunis; Tunis University, Montfleury; Tunis Tunisia
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Zhao X, Xie M, Liu X, Zhang Y, Xiao X, Lin L, Feng X. ChiralN,N′-Dioxide-Yttrium Triflate Complexes-Catalyzed Asymmetric Aldol Cyclization of α-Keto Esters with α-Isothiocyanato Imide. Adv Synth Catal 2013. [DOI: 10.1002/adsc.201300593] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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4
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Diastereoselective synthesis of ring-fused thiocarbamates bearing contiguous quaternary carbon centers. Tetrahedron Lett 2013. [DOI: 10.1016/j.tetlet.2013.04.121] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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Chahkandi B, Tayyari SF, Bakhshaei M, Chahkandi M. Investigation of simple and water assisted tautomerism in a derivative of 1,3,4-oxadiazole: a DFT study. J Mol Graph Model 2013; 44:120-8. [PMID: 23792209 DOI: 10.1016/j.jmgm.2013.04.002] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2012] [Revised: 04/05/2013] [Accepted: 04/05/2013] [Indexed: 11/30/2022]
Abstract
Investigation of tautomerism and transition states in a derivative of 1,3,4-oxadiazole (A, B, C and D) in the gas phase and in solution and in a micro hydrated environment with 1-3 water molecules was performed by calculations at the DFT-B3LYP/6-311++G(d,p) level of theory. The solvent effect is taken into account via the self-consistent reaction field (SCRF) method. The geometries of four possible tautomers of 5-amino-1,3,4-oxadiazole-2(3H)-one were optimized in the gas phase and solution with polarized continuum model (PCM). It was found that in the gas phase and different solvents, A and C tautomers are the most stable and unstable forms, respectively. The results show that the tautomeric interconversion C to D has the lowest Gibbs free energy changes and so the highest equilibrium constant in the gas phase and solution. The equilibrium and rate constants of intermolecular tautomerism in the absence and presence of 1-3 molecules of water were also calculated. The calculated results show that the presence of water molecules considerably reduces the barrier energy of the various reactions. Therefore, this water-assisted tautomerism can be performed fast, especially, with the assistance of two molecules of water.
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Affiliation(s)
- Behzad Chahkandi
- Department of Chemistry, Shahrood Branch, Islamic Azad University, Shahrood, Iran.
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Pandit N, Singla RK, Shrivastava B. Current updates on oxazolidinone and its significance. INTERNATIONAL JOURNAL OF MEDICINAL CHEMISTRY 2012; 2012:159285. [PMID: 25954524 PMCID: PMC4412212 DOI: 10.1155/2012/159285] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/22/2011] [Revised: 10/16/2011] [Accepted: 10/20/2011] [Indexed: 11/17/2022]
Abstract
Oxazolidinone is a five-member heterocyclic ring exhibiting potential medicinal properties with preferential antibacterial activity. Scientists reported various synthetic procedures for this heterocyclic structure. Current review articles tried to cover each and every potential aspect of oxazolidinone like synthetic routes, pharmacological mechanism of action, medicinal properties, and current research activities.
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Affiliation(s)
- Neha Pandit
- Department of Pharmaceutical Chemistry, School of Pharmaceutical Sciences, Jaipur National University, Jagatpura-Jaipur, Rajasthan 302025, India
| | - Rajeev K. Singla
- Sadbhavna College of Management & Technology, Jalaldiwal, Ludhiana-Barnala State Highway-13, Raikot (Ludhiana), Punjab, India
| | - Birendra Shrivastava
- Department of Pharmaceutical Chemistry, School of Pharmaceutical Sciences, Jaipur National University, Jagatpura-Jaipur, Rajasthan 302025, India
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7
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Jiang X, Zhang G, Fu D, Cao Y, Shen F, Wang R. Direct Organocatalytic Asymmetric Aldol Reaction of α-Isothiocyanato Imides to α-Ketoesters under Low Ligand Loading: A Doubly Stereocontrolled Approach to Cyclic Thiocarbamates Bearing Chiral Quaternary Stereocenters. Org Lett 2010; 12:1544-7. [DOI: 10.1021/ol1002829] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Xianxing Jiang
- State Key Laboratory of Applied Organic Chemistry, Institute of Biochemistry and Molecular Biology, Key Laboratory of Preclinical Study for New Drugs of Gansu Province, Lanzhou University, Lanzhou, 730000, China, and Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Kowloon, Hong Kong
| | - Gen Zhang
- State Key Laboratory of Applied Organic Chemistry, Institute of Biochemistry and Molecular Biology, Key Laboratory of Preclinical Study for New Drugs of Gansu Province, Lanzhou University, Lanzhou, 730000, China, and Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Kowloon, Hong Kong
| | - Dan Fu
- State Key Laboratory of Applied Organic Chemistry, Institute of Biochemistry and Molecular Biology, Key Laboratory of Preclinical Study for New Drugs of Gansu Province, Lanzhou University, Lanzhou, 730000, China, and Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Kowloon, Hong Kong
| | - Yiming Cao
- State Key Laboratory of Applied Organic Chemistry, Institute of Biochemistry and Molecular Biology, Key Laboratory of Preclinical Study for New Drugs of Gansu Province, Lanzhou University, Lanzhou, 730000, China, and Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Kowloon, Hong Kong
| | - Fangfang Shen
- State Key Laboratory of Applied Organic Chemistry, Institute of Biochemistry and Molecular Biology, Key Laboratory of Preclinical Study for New Drugs of Gansu Province, Lanzhou University, Lanzhou, 730000, China, and Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Kowloon, Hong Kong
| | - Rui Wang
- State Key Laboratory of Applied Organic Chemistry, Institute of Biochemistry and Molecular Biology, Key Laboratory of Preclinical Study for New Drugs of Gansu Province, Lanzhou University, Lanzhou, 730000, China, and Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Kowloon, Hong Kong
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Castilla J, Marín I, Matheu MI, Díaz Y, Castillón S. Short and General Procedure for Synthesizing Cis-1,2-Fused 1,3-Oxathiolan-, 1,3-Oxaselenolan-, and 1,3-Oxazolidin-2-imine Carbohydrate Derivatives. J Org Chem 2009; 75:514-7. [DOI: 10.1021/jo9023649] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Javier Castilla
- Departament de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, C/ Marcel•lí Domingo s/n, 43007 Tarragona, Spain
| | - Irene Marín
- Departament de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, C/ Marcel•lí Domingo s/n, 43007 Tarragona, Spain
| | - M. Isabel Matheu
- Departament de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, C/ Marcel•lí Domingo s/n, 43007 Tarragona, Spain
| | - Yolanda Díaz
- Departament de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, C/ Marcel•lí Domingo s/n, 43007 Tarragona, Spain
| | - Sergio Castillón
- Departament de Química Analítica i Química Orgànica, Universitat Rovira i Virgili, C/ Marcel•lí Domingo s/n, 43007 Tarragona, Spain
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9
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Varshney V, Mishra NN, Shukla PK, Sahu DP. Novel 4-N-substituted aryl but-3-ene-1,2-dione derivatives of piperazinyloxazolidinones as antibacterial agents. Bioorg Med Chem Lett 2009; 19:6810-2. [DOI: 10.1016/j.bmcl.2009.07.106] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2009] [Revised: 07/18/2009] [Accepted: 07/23/2009] [Indexed: 10/20/2022]
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10
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Wang XJ, Du GJ, Zhao SQ, Yan M, Gu LQ. Synthesis and Antibacterial Activity of a Series of α-Substituted Acetylpiperazinyl Oxazolidinones. Chem Biol Drug Des 2009; 74:276-81. [DOI: 10.1111/j.1747-0285.2009.00859.x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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11
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Synthesis and antibacterial evaluation of isoxazolinyl oxazolidinones: Search for potent antibacterial. Bioorg Med Chem Lett 2009; 19:3573-6. [DOI: 10.1016/j.bmcl.2009.04.133] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2009] [Revised: 04/16/2009] [Accepted: 04/29/2009] [Indexed: 10/20/2022]
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12
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López Ó, Zafra E, Maya I, Fuentes J, Diánez MJ, Estrada MD, Pérez-Garrido S, Fernández-Bolaños JG. cis-Fused bicyclic sugar thiocarbamates. Reactivity towards amines. Tetrahedron 2008. [DOI: 10.1016/j.tet.2008.09.093] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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13
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Srivastava BK, Soni R, Patel JZ, Solanki M, Valani D, Gupta S, Mishra B, Takale V, Pandya P, Jain MR, Patel PR. Synthesis and in vitro antibacterial activity of novel methylamino piperidinyl oxazolidinones. Bioorg Med Chem Lett 2007; 17:5227-32. [PMID: 17624776 DOI: 10.1016/j.bmcl.2007.06.075] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2007] [Revised: 06/22/2007] [Accepted: 06/27/2007] [Indexed: 11/20/2022]
Abstract
Design and synthesis of a few novel methylamino piperidinyl substituted oxazolidinones are reported. Their antibacterial activities have been evaluated in a MIC assay against broader panel of both susceptible and resistant Gram-positive strains. (S)-N-{3-[3-Fluoro-4-(methyl-{1-[3-(5-nitrofuran-2-yl)-acryloyl]-piperidin-4-yl}-amino)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}-acetamide 4i has shown comparable antibacterial activity to linezolid and eperezolid in the MIC assay, additionally compound 4i showed good antibacterial activity with an in vitro MIC value of 2-4 microg/mL against linezolid resistant Staphylococcus aureus (linezolid 16 microg/mL).
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14
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Zou C, Zhou L. QSAR study of oxazolidinone antibacterial agents using artificial neural networks. MOLECULAR SIMULATION 2007. [DOI: 10.1080/08927020601188528] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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15
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Lohray BB, Gandhi N, Srivastava BK, Lohray VB. 3D QSAR studies of N-4-arylacryloylpiperazin-1-yl-phenyl-oxazolidinones: A novel class of antibacterial agents. Bioorg Med Chem Lett 2006; 16:3817-23. [PMID: 16650983 DOI: 10.1016/j.bmcl.2006.04.023] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2006] [Revised: 04/07/2006] [Accepted: 04/11/2006] [Indexed: 10/24/2022]
Abstract
Three-dimensional QSAR studies for N-4-arylacryloylpiperazin-1-yl-phenyl-oxazolidinones were conducted using TSAR 3.3. The in vitro activities (MICs) of the compounds against Staphylococcus aureus ATCC 25923 exhibited a strong correlation with the prediction made by the model developed in the present study.
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Affiliation(s)
- B B Lohray
- Zydus Research Centre, Cadila Healthcare Ltd, Sarkhej-Bavla N.H. No. 8A, Moraiya, Ahmedabad, Gujarat 382210, India.
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Renslo AR, Luehr GW, Gordeev MF. Recent developments in the identification of novel oxazolidinone antibacterial agents. Bioorg Med Chem 2006; 14:4227-40. [PMID: 16527486 DOI: 10.1016/j.bmc.2006.01.068] [Citation(s) in RCA: 104] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2005] [Revised: 01/25/2006] [Accepted: 01/26/2006] [Indexed: 10/24/2022]
Abstract
The oxazolidinones are a promising new class of synthetic antibacterial agents. Here, we review recent efforts directed at the discovery of new antibacterial compounds of this class. New structures and structure-activity relationships (SAR) are discussed in the context of earlier work in the field. Key issues of potency, spectrum, selectivity, in vivo efficacy, and pharmacokinetic profile of the new analogs are addressed.
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Affiliation(s)
- Adam R Renslo
- Vicuron Pharmaceuticals, 34790 Ardentech Ct., Fremont, CA 94555, USA.
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Lohray BB, Lohray VB, Srivastava BK, Gupta S, Solanki M, Pandya P, Kapadnis P. Novel 4-N-substituted aryl pent-2-ene-1,4-dione derivatives of piperazinyloxazolidinones as antibacterials. Bioorg Med Chem Lett 2006; 16:1557-61. [PMID: 16386420 DOI: 10.1016/j.bmcl.2005.12.025] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2005] [Revised: 11/25/2005] [Accepted: 12/09/2005] [Indexed: 11/20/2022]
Abstract
A few substituted piperazinylphenyloxazolidinone compounds 6-13 having substitution on the distant nitrogen atom of piperazine ring scaffold have been synthesized and evaluated for their antibacterial activity in Gram-positive bacteria. A few compounds showed superior in vitro antibacterial activity against Staphylococcus aureus, Staphylococcus epidermidis, Enterococcus faecalis, and Streptococcus pyogenes than linezolid and eperezolid.
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Affiliation(s)
- Braj Bhushan Lohray
- Zydus Research Centre, Sarkhej-Bavla N.H 8A Moraiya, Ahmedabad-382210, India.
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Cui Y, Dang Y, Yang Y, Zhang S, Ji R. Syntheses and antibacterial activity of a series of 3-(pyridine-3-yl)-2-oxazolidinone. Eur J Med Chem 2005; 40:209-14. [PMID: 15694656 DOI: 10.1016/j.ejmech.2004.10.012] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2004] [Revised: 10/17/2004] [Accepted: 10/26/2004] [Indexed: 10/25/2022]
Abstract
The syntheses of substituted piperazinyl pyridyl oxazolidinones 8-16 are described. Their in vitro activities against Gram-positive organisms such as Staphylococcus aureus, Staphylococcus epidermidis, Streptococcus and enterococcus were evaluated by minimum inhibitory concentration (MIC) determination. Compound 8 and 10 were found to be superior to linezolid.
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Affiliation(s)
- Yingjie Cui
- Laboratoire de Pharmacochimie Moléculaire et Systèmes Membranaires, Université Paris 7-Denis Diderot, 75251 Paris cedex 05, France.
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Srivastava BK, Kapadnis PB, Pandya P, Lohray VB. Novel Mannich ketones of oxazolidinones as antibacterial agents. Eur J Med Chem 2005; 39:989-92. [PMID: 15501548 DOI: 10.1016/j.ejmech.2004.07.007] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2004] [Revised: 07/29/2004] [Accepted: 07/30/2004] [Indexed: 10/26/2022]
Abstract
A few Mannich ketones of piperazinyl oxazolidinone derivatives have been synthesized and their antibacterial activity in various Gram-positive organisms such as Bacillus subtilis, Staphylococcus aureus, Staphylococcus epidermidis and Enterococcus faecalis were evaluated by MIC determination. Compound 12 showed comparable activity (MIC) to linezolid and superior to eperezolid.
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Lohray BB, Lohray VB, Srivastava BK, Kapadnis PB, Pandya P. Novel tetrahydro-thieno pyridyl oxazolidinone: an antibacterial agent. Bioorg Med Chem 2004; 12:4557-64. [PMID: 15358283 DOI: 10.1016/j.bmc.2004.07.019] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2004] [Revised: 07/06/2004] [Accepted: 07/07/2004] [Indexed: 11/16/2022]
Abstract
Synthesis of a number of 4,5,6,7-tetrahydro-thieno[3,2-c]pyridine substituted oxazolidinones have been reported. They have been screened against a panel of Gram-positive pathogens including methicillin-resistant Staphylococcus aureus and vancomycin-resistant Enterococcus faecalis. A SAR has been developed. Compound 15 showed comparable activity (MIC) to linezolid and superior to eperezolid.
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Affiliation(s)
- Braj Bhushan Lohray
- Zydus Research Centre, Cadila Healthcare Ltd, Sarkhej-Bavla N. H.8 A, Moraiya, Ahmedabad 382210, India.
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